2025-09-08T06:47:15,885 Created temporary directory: /tmp/pip-build-tracker-j6qjbybp 2025-09-08T06:47:15,886 Initialized build tracking at /tmp/pip-build-tracker-j6qjbybp 2025-09-08T06:47:15,886 Created build tracker: /tmp/pip-build-tracker-j6qjbybp 2025-09-08T06:47:15,886 Entered build tracker: /tmp/pip-build-tracker-j6qjbybp 2025-09-08T06:47:15,886 Created temporary directory: /tmp/pip-wheel-w6fo8vn1 2025-09-08T06:47:15,889 Created temporary directory: /tmp/pip-ephem-wheel-cache-u5s21ehm 2025-09-08T06:47:15,945 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T06:47:15,947 2 location(s) to search for versions of limix-inference: 2025-09-08T06:47:15,947 * https://pypi.org/simple/limix-inference/ 2025-09-08T06:47:15,947 * https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:47:15,948 Fetching project page and analyzing links: https://pypi.org/simple/limix-inference/ 2025-09-08T06:47:15,948 Getting page 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https://files.pythonhosted.org/packages/37/90/968ce27b1e6d3350b72dbebe7cec3652856460991565a814850b63c91bc9/limix-inference-1.1.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.6 2025-09-08T06:47:16,034 Fetching project page and analyzing links: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:47:16,034 Getting page https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:47:16,035 Found index url https://www.piwheels.org/simple/ 2025-09-08T06:47:16,131 Fetched page https://www.piwheels.org/simple/limix-inference/ as text/html 2025-09-08T06:47:16,133 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.6-py3-none-any.whl#sha256=651f7582bd2a442b4225a69469bcda5fbf76a162526fbc7a729f3c500e3a1213 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:47:16,133 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.5-py3-none-any.whl#sha256=5bda56053fd5f49df45a3fa0355aa2e8eb7188b2034a5f8f3ef53a34d59f3c4c (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:47:16,133 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.4-py3-none-any.whl#sha256=8ac3fc4a2bb47fe430b536bd2ab999c9f1adf98649c81b84e3c3375bae68a7f5 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:47:16,133 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.3-py3-none-any.whl#sha256=ea94a7bf8b3e34500a9a155260fba2b2080259767f9520885d86caa0db8f82be (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:47:16,134 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.2-py3-none-any.whl#sha256=dd03018c1fab1132bb8de87bb4acad84ea64bc1ef102b6468e39cc3402fb53ff (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:47:16,134 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.1-py3-none-any.whl#sha256=e2cf1f0dceb70a5e3e8c599f7b837ff2e5f720a0b8eeadc3a753f67d5ced9884 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:47:16,134 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.0-py3-none-any.whl#sha256=91b43e3e511c0d914e6a452b861a3ac5f01283a03917ed6fe513e7e1d56a9f60 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:47:16,134 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev2-py3-none-any.whl#sha256=bef50a5f6deb5259a976b1356a18e19f2d77ab81d9e24ea0289eff832e394a68 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:47:16,134 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev1-py3-none-any.whl#sha256=94b2feb2718da440d09feb6bb06ec54ff2d5b2dec96f825271b8c3834da7e1cd (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:47:16,134 Skipping link: not a file: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:47:16,134 Skipping link: not a file: https://pypi.org/simple/limix-inference/ 2025-09-08T06:47:16,162 Given no hashes to check 1 links for project 'limix-inference': discarding no candidates 2025-09-08T06:47:16,163 Collecting limix-inference==1.0.5.dev0 2025-09-08T06:47:16,164 Created temporary directory: /tmp/pip-unpack-efrkyf77 2025-09-08T06:47:16,302 Downloading limix-inference-1.0.5.dev0.tar.gz (25 kB) 2025-09-08T06:47:16,360 Added limix-inference==1.0.5.dev0 from https://files.pythonhosted.org/packages/15/13/4d41ac421df2679bce96b28e1d82ee70c3cebed001364a876aa866dbc02e/limix-inference-1.0.5.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-j6qjbybp' 2025-09-08T06:47:16,361 Running setup.py (path:/tmp/pip-wheel-w6fo8vn1/limix-inference_90f7b03f5e0747d4869a24d985671d8f/setup.py) egg_info for package limix-inference 2025-09-08T06:47:16,361 Created temporary directory: /tmp/pip-pip-egg-info-8jqbqown 2025-09-08T06:47:16,361 Preparing metadata (setup.py): started 2025-09-08T06:47:16,362 Running command python setup.py egg_info 2025-09-08T06:47:17,369 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:47:17,369 !! 2025-09-08T06:47:17,369 ******************************************************************************** 2025-09-08T06:47:17,370 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:47:17,370 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:47:17,370 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:47:17,370 or your builds will no longer be supported. 2025-09-08T06:47:17,370 ******************************************************************************** 2025-09-08T06:47:17,370 !! 2025-09-08T06:47:17,370 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:47:17,456 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:47:17,456 warnings.warn(msg) 2025-09-08T06:47:17,944 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:47:17,944 !! 2025-09-08T06:47:17,944 ******************************************************************************** 2025-09-08T06:47:17,944 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:47:17,944 License :: OSI Approved :: MIT License 2025-09-08T06:47:17,944 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:47:17,945 ******************************************************************************** 2025-09-08T06:47:17,945 !! 2025-09-08T06:47:17,945 self._finalize_license_expression() 2025-09-08T06:47:18,018 running egg_info 2025-09-08T06:47:18,093 creating /tmp/pip-pip-egg-info-8jqbqown/limix_inference.egg-info 2025-09-08T06:47:18,094 writing /tmp/pip-pip-egg-info-8jqbqown/limix_inference.egg-info/PKG-INFO 2025-09-08T06:47:18,095 writing dependency_links to /tmp/pip-pip-egg-info-8jqbqown/limix_inference.egg-info/dependency_links.txt 2025-09-08T06:47:18,096 writing requirements to /tmp/pip-pip-egg-info-8jqbqown/limix_inference.egg-info/requires.txt 2025-09-08T06:47:18,096 writing top-level names to /tmp/pip-pip-egg-info-8jqbqown/limix_inference.egg-info/top_level.txt 2025-09-08T06:47:18,097 writing manifest file '/tmp/pip-pip-egg-info-8jqbqown/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:47:18,330 reading manifest file '/tmp/pip-pip-egg-info-8jqbqown/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:47:18,331 reading manifest template 'MANIFEST.in' 2025-09-08T06:47:18,336 adding license file 'LICENSE' 2025-09-08T06:47:18,340 writing manifest file '/tmp/pip-pip-egg-info-8jqbqown/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:47:18,465 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T06:47:18,470 Source in /tmp/pip-wheel-w6fo8vn1/limix-inference_90f7b03f5e0747d4869a24d985671d8f has version 1.0.5.dev0, which satisfies requirement limix-inference==1.0.5.dev0 from https://files.pythonhosted.org/packages/15/13/4d41ac421df2679bce96b28e1d82ee70c3cebed001364a876aa866dbc02e/limix-inference-1.0.5.dev0.tar.gz 2025-09-08T06:47:18,470 Removed limix-inference==1.0.5.dev0 from https://files.pythonhosted.org/packages/15/13/4d41ac421df2679bce96b28e1d82ee70c3cebed001364a876aa866dbc02e/limix-inference-1.0.5.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-j6qjbybp' 2025-09-08T06:47:18,475 Created temporary directory: /tmp/pip-unpack-4x2w797t 2025-09-08T06:47:18,475 Created temporary directory: /tmp/pip-unpack-pgbb8r6i 2025-09-08T06:47:18,476 Building wheels for collected packages: limix-inference 2025-09-08T06:47:18,477 Created temporary directory: /tmp/pip-wheel-whs0wruy 2025-09-08T06:47:18,477 DEPRECATION: Building 'limix-inference' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'limix-inference'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T06:47:18,478 Building wheel for limix-inference (setup.py): started 2025-09-08T06:47:18,479 Destination directory: /tmp/pip-wheel-whs0wruy 2025-09-08T06:47:18,479 Running command python setup.py bdist_wheel 2025-09-08T06:47:19,497 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:47:19,497 !! 2025-09-08T06:47:19,498 ******************************************************************************** 2025-09-08T06:47:19,498 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:47:19,498 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:47:19,498 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:47:19,498 or your builds will no longer be supported. 2025-09-08T06:47:19,498 ******************************************************************************** 2025-09-08T06:47:19,498 !! 2025-09-08T06:47:19,499 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:47:19,584 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:47:19,584 warnings.warn(msg) 2025-09-08T06:47:20,055 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:47:20,056 !! 2025-09-08T06:47:20,056 ******************************************************************************** 2025-09-08T06:47:20,056 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:47:20,056 License :: OSI Approved :: MIT License 2025-09-08T06:47:20,056 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:47:20,056 ******************************************************************************** 2025-09-08T06:47:20,057 !! 2025-09-08T06:47:20,057 self._finalize_license_expression() 2025-09-08T06:47:20,057 running bdist_wheel 2025-09-08T06:47:20,348 running build 2025-09-08T06:47:20,348 running build_py 2025-09-08T06:47:20,425 creating build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:47:20,425 copying limix_inference/fruits.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:47:20,426 copying limix_inference/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:47:20,427 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:47:20,427 copying limix_inference/mean/_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:47:20,428 copying limix_inference/mean/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:47:20,428 copying limix_inference/mean/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:47:20,429 copying limix_inference/mean/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:47:20,429 creating build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:47:20,430 copying limix_inference/lik/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:47:20,430 copying limix_inference/lik/_prod.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:47:20,431 copying limix_inference/lik/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:47:20,431 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:47:20,432 copying limix_inference/lmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:47:20,432 creating build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:47:20,433 copying limix_inference/liknorm/_machine.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:47:20,433 copying limix_inference/liknorm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:47:20,434 copying limix_inference/liknorm/_build.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:47:20,434 creating build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:47:20,435 copying limix_inference/random/_glmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:47:20,435 copying limix_inference/random/_canonical.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:47:20,436 copying limix_inference/random/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:47:20,436 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:47:20,437 copying limix_inference/glmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:47:20,437 creating build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:47:20,437 copying limix_inference/link/_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:47:20,438 copying limix_inference/link/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:47:20,439 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:47:20,439 copying limix_inference/cov/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:47:20,440 copying limix_inference/cov/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:47:20,440 copying limix_inference/cov/_eye.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:47:20,440 copying limix_inference/cov/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:47:20,441 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:47:20,441 copying limix_inference/lmm/_fastlmm/_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:47:20,442 copying limix_inference/lmm/_fastlmm/_core.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:47:20,443 copying limix_inference/lmm/_fastlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:47:20,443 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:47:20,443 copying limix_inference/lmm/_slowlmm/_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:47:20,444 copying limix_inference/lmm/_slowlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:47:20,445 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:47:20,445 copying limix_inference/glmm/_ep/_fixed.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:47:20,446 copying limix_inference/glmm/_ep/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:47:20,446 copying limix_inference/glmm/_ep/_ep.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:47:20,447 copying limix_inference/glmm/_ep/_conditioning.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:47:20,447 copying limix_inference/glmm/_ep/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:47:20,448 running egg_info 2025-09-08T06:47:20,529 writing limix_inference.egg-info/PKG-INFO 2025-09-08T06:47:20,531 writing dependency_links to limix_inference.egg-info/dependency_links.txt 2025-09-08T06:47:20,531 writing requirements to limix_inference.egg-info/requires.txt 2025-09-08T06:47:20,532 writing top-level names to limix_inference.egg-info/top_level.txt 2025-09-08T06:47:20,627 reading manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:47:20,630 reading manifest template 'MANIFEST.in' 2025-09-08T06:47:20,635 adding license file 'LICENSE' 2025-09-08T06:47:20,640 writing manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:47:20,641 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.cov.test' is absent from the `packages` configuration. 2025-09-08T06:47:20,641 !! 2025-09-08T06:47:20,642 ******************************************************************************** 2025-09-08T06:47:20,642 ############################ 2025-09-08T06:47:20,642 # Package would be ignored # 2025-09-08T06:47:20,642 ############################ 2025-09-08T06:47:20,642 Python recognizes 'limix_inference.cov.test' as an importable package[^1], 2025-09-08T06:47:20,642 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:47:20,642 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:47:20,642 package, please make sure that 'limix_inference.cov.test' is explicitly added 2025-09-08T06:47:20,642 to the `packages` configuration field. 2025-09-08T06:47:20,643 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:47:20,643 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:47:20,643 instead of `find_packages(...)`/`find:`). 2025-09-08T06:47:20,643 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:47:20,643 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:47:20,643 If you don't want 'limix_inference.cov.test' to be distributed and are 2025-09-08T06:47:20,643 already explicitly excluding 'limix_inference.cov.test' via 2025-09-08T06:47:20,643 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:47:20,644 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:47:20,644 combination with a more fine grained `package-data` configuration. 2025-09-08T06:47:20,644 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:47:20,644 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:47:20,644 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:47:20,644 even if it does not contain any `.py` files. 2025-09-08T06:47:20,644 On the other hand, currently there is no concept of package data 2025-09-08T06:47:20,645 directory, all directories are treated like packages. 2025-09-08T06:47:20,645 ******************************************************************************** 2025-09-08T06:47:20,645 !! 2025-09-08T06:47:20,645 check.warn(importable) 2025-09-08T06:47:20,645 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.glmm._ep.test' is absent from the `packages` configuration. 2025-09-08T06:47:20,645 !! 2025-09-08T06:47:20,645 ******************************************************************************** 2025-09-08T06:47:20,645 ############################ 2025-09-08T06:47:20,645 # Package would be ignored # 2025-09-08T06:47:20,646 ############################ 2025-09-08T06:47:20,646 Python recognizes 'limix_inference.glmm._ep.test' as an importable package[^1], 2025-09-08T06:47:20,646 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:47:20,646 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:47:20,646 package, please make sure that 'limix_inference.glmm._ep.test' is explicitly added 2025-09-08T06:47:20,646 to the `packages` configuration field. 2025-09-08T06:47:20,646 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:47:20,646 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:47:20,646 instead of `find_packages(...)`/`find:`). 2025-09-08T06:47:20,647 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:47:20,647 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:47:20,647 If you don't want 'limix_inference.glmm._ep.test' to be distributed and are 2025-09-08T06:47:20,647 already explicitly excluding 'limix_inference.glmm._ep.test' via 2025-09-08T06:47:20,647 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:47:20,647 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:47:20,647 combination with a more fine grained `package-data` configuration. 2025-09-08T06:47:20,648 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:47:20,648 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:47:20,648 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:47:20,648 even if it does not contain any `.py` files. 2025-09-08T06:47:20,648 On the other hand, currently there is no concept of package data 2025-09-08T06:47:20,648 directory, all directories are treated like packages. 2025-09-08T06:47:20,648 ******************************************************************************** 2025-09-08T06:47:20,648 !! 2025-09-08T06:47:20,649 check.warn(importable) 2025-09-08T06:47:20,649 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.link.test' is absent from the `packages` configuration. 2025-09-08T06:47:20,649 !! 2025-09-08T06:47:20,649 ******************************************************************************** 2025-09-08T06:47:20,649 ############################ 2025-09-08T06:47:20,649 # Package would be ignored # 2025-09-08T06:47:20,649 ############################ 2025-09-08T06:47:20,649 Python recognizes 'limix_inference.link.test' as an importable package[^1], 2025-09-08T06:47:20,649 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:47:20,650 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:47:20,650 package, please make sure that 'limix_inference.link.test' is explicitly added 2025-09-08T06:47:20,650 to the `packages` configuration field. 2025-09-08T06:47:20,650 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:47:20,650 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:47:20,650 instead of `find_packages(...)`/`find:`). 2025-09-08T06:47:20,650 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:47:20,650 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:47:20,651 If you don't want 'limix_inference.link.test' to be distributed and are 2025-09-08T06:47:20,651 already explicitly excluding 'limix_inference.link.test' via 2025-09-08T06:47:20,651 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:47:20,651 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:47:20,651 combination with a more fine grained `package-data` configuration. 2025-09-08T06:47:20,651 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:47:20,651 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:47:20,652 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:47:20,652 even if it does not contain any `.py` files. 2025-09-08T06:47:20,652 On the other hand, currently there is no concept of package data 2025-09-08T06:47:20,652 directory, all directories are treated like packages. 2025-09-08T06:47:20,652 ******************************************************************************** 2025-09-08T06:47:20,652 !! 2025-09-08T06:47:20,652 check.warn(importable) 2025-09-08T06:47:20,652 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._fastlmm.test' is absent from the `packages` configuration. 2025-09-08T06:47:20,652 !! 2025-09-08T06:47:20,653 ******************************************************************************** 2025-09-08T06:47:20,653 ############################ 2025-09-08T06:47:20,653 # Package would be ignored # 2025-09-08T06:47:20,653 ############################ 2025-09-08T06:47:20,653 Python recognizes 'limix_inference.lmm._fastlmm.test' as an importable package[^1], 2025-09-08T06:47:20,653 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:47:20,653 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:47:20,653 package, please make sure that 'limix_inference.lmm._fastlmm.test' is explicitly added 2025-09-08T06:47:20,653 to the `packages` configuration field. 2025-09-08T06:47:20,654 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:47:20,654 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:47:20,654 instead of `find_packages(...)`/`find:`). 2025-09-08T06:47:20,654 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:47:20,654 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:47:20,654 If you don't want 'limix_inference.lmm._fastlmm.test' to be distributed and are 2025-09-08T06:47:20,654 already explicitly excluding 'limix_inference.lmm._fastlmm.test' via 2025-09-08T06:47:20,654 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:47:20,655 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:47:20,655 combination with a more fine grained `package-data` configuration. 2025-09-08T06:47:20,655 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:47:20,655 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:47:20,655 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:47:20,655 even if it does not contain any `.py` files. 2025-09-08T06:47:20,655 On the other hand, currently there is no concept of package data 2025-09-08T06:47:20,655 directory, all directories are treated like packages. 2025-09-08T06:47:20,656 ******************************************************************************** 2025-09-08T06:47:20,656 !! 2025-09-08T06:47:20,656 check.warn(importable) 2025-09-08T06:47:20,656 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._slowlmm.test' is absent from the `packages` configuration. 2025-09-08T06:47:20,656 !! 2025-09-08T06:47:20,656 ******************************************************************************** 2025-09-08T06:47:20,656 ############################ 2025-09-08T06:47:20,656 # Package would be ignored # 2025-09-08T06:47:20,656 ############################ 2025-09-08T06:47:20,657 Python recognizes 'limix_inference.lmm._slowlmm.test' as an importable package[^1], 2025-09-08T06:47:20,657 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:47:20,657 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:47:20,657 package, please make sure that 'limix_inference.lmm._slowlmm.test' is explicitly added 2025-09-08T06:47:20,657 to the `packages` configuration field. 2025-09-08T06:47:20,657 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:47:20,657 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:47:20,657 instead of `find_packages(...)`/`find:`). 2025-09-08T06:47:20,657 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:47:20,658 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:47:20,658 If you don't want 'limix_inference.lmm._slowlmm.test' to be distributed and are 2025-09-08T06:47:20,658 already explicitly excluding 'limix_inference.lmm._slowlmm.test' via 2025-09-08T06:47:20,658 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:47:20,658 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:47:20,658 combination with a more fine grained `package-data` configuration. 2025-09-08T06:47:20,658 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:47:20,658 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:47:20,659 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:47:20,659 even if it does not contain any `.py` files. 2025-09-08T06:47:20,659 On the other hand, currently there is no concept of package data 2025-09-08T06:47:20,659 directory, all directories are treated like packages. 2025-09-08T06:47:20,659 ******************************************************************************** 2025-09-08T06:47:20,659 !! 2025-09-08T06:47:20,659 check.warn(importable) 2025-09-08T06:47:20,660 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.mean.test' is absent from the `packages` configuration. 2025-09-08T06:47:20,660 !! 2025-09-08T06:47:20,660 ******************************************************************************** 2025-09-08T06:47:20,660 ############################ 2025-09-08T06:47:20,660 # Package would be ignored # 2025-09-08T06:47:20,660 ############################ 2025-09-08T06:47:20,660 Python recognizes 'limix_inference.mean.test' as an importable package[^1], 2025-09-08T06:47:20,660 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:47:20,660 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:47:20,660 package, please make sure that 'limix_inference.mean.test' is explicitly added 2025-09-08T06:47:20,661 to the `packages` configuration field. 2025-09-08T06:47:20,661 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:47:20,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:47:20,661 instead of `find_packages(...)`/`find:`). 2025-09-08T06:47:20,661 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:47:20,661 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:47:20,661 If you don't want 'limix_inference.mean.test' to be distributed and are 2025-09-08T06:47:20,662 already explicitly excluding 'limix_inference.mean.test' via 2025-09-08T06:47:20,662 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:47:20,662 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:47:20,662 combination with a more fine grained `package-data` configuration. 2025-09-08T06:47:20,662 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:47:20,662 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:47:20,663 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:47:20,663 even if it does not contain any `.py` files. 2025-09-08T06:47:20,663 On the other hand, currently there is no concept of package data 2025-09-08T06:47:20,663 directory, all directories are treated like packages. 2025-09-08T06:47:20,663 ******************************************************************************** 2025-09-08T06:47:20,663 !! 2025-09-08T06:47:20,663 check.warn(importable) 2025-09-08T06:47:20,663 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.random.test' is absent from the `packages` configuration. 2025-09-08T06:47:20,663 !! 2025-09-08T06:47:20,663 ******************************************************************************** 2025-09-08T06:47:20,664 ############################ 2025-09-08T06:47:20,664 # Package would be ignored # 2025-09-08T06:47:20,664 ############################ 2025-09-08T06:47:20,664 Python recognizes 'limix_inference.random.test' as an importable package[^1], 2025-09-08T06:47:20,664 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:47:20,664 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:47:20,664 package, please make sure that 'limix_inference.random.test' is explicitly added 2025-09-08T06:47:20,664 to the `packages` configuration field. 2025-09-08T06:47:20,664 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:47:20,664 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:47:20,665 instead of `find_packages(...)`/`find:`). 2025-09-08T06:47:20,665 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:47:20,665 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:47:20,665 If you don't want 'limix_inference.random.test' to be distributed and are 2025-09-08T06:47:20,665 already explicitly excluding 'limix_inference.random.test' via 2025-09-08T06:47:20,665 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:47:20,665 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:47:20,665 combination with a more fine grained `package-data` configuration. 2025-09-08T06:47:20,666 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:47:20,666 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:47:20,666 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:47:20,666 even if it does not contain any `.py` files. 2025-09-08T06:47:20,666 On the other hand, currently there is no concept of package data 2025-09-08T06:47:20,666 directory, all directories are treated like packages. 2025-09-08T06:47:20,667 ******************************************************************************** 2025-09-08T06:47:20,667 !! 2025-09-08T06:47:20,667 check.warn(importable) 2025-09-08T06:47:20,667 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.test' is absent from the `packages` configuration. 2025-09-08T06:47:20,667 !! 2025-09-08T06:47:20,667 ******************************************************************************** 2025-09-08T06:47:20,667 ############################ 2025-09-08T06:47:20,667 # Package would be ignored # 2025-09-08T06:47:20,667 ############################ 2025-09-08T06:47:20,668 Python recognizes 'limix_inference.test' as an importable package[^1], 2025-09-08T06:47:20,668 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:47:20,668 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:47:20,668 package, please make sure that 'limix_inference.test' is explicitly added 2025-09-08T06:47:20,668 to the `packages` configuration field. 2025-09-08T06:47:20,668 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:47:20,668 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:47:20,668 instead of `find_packages(...)`/`find:`). 2025-09-08T06:47:20,669 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:47:20,669 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:47:20,669 If you don't want 'limix_inference.test' to be distributed and are 2025-09-08T06:47:20,669 already explicitly excluding 'limix_inference.test' via 2025-09-08T06:47:20,669 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:47:20,669 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:47:20,669 combination with a more fine grained `package-data` configuration. 2025-09-08T06:47:20,670 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:47:20,670 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:47:20,670 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:47:20,670 even if it does not contain any `.py` files. 2025-09-08T06:47:20,670 On the other hand, currently there is no concept of package data 2025-09-08T06:47:20,670 directory, all directories are treated like packages. 2025-09-08T06:47:20,670 ******************************************************************************** 2025-09-08T06:47:20,671 !! 2025-09-08T06:47:20,671 check.warn(importable) 2025-09-08T06:47:20,671 creating build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:47:20,671 copying limix_inference/test/test_liknorm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:47:20,671 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:47:20,671 copying limix_inference/mean/test/test_linear_mean.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:47:20,671 copying limix_inference/mean/test/test_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:47:20,671 creating build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:47:20,671 copying limix_inference/random/test/test_sampling.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:47:20,671 creating build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:47:20,672 copying limix_inference/link/test/test_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:47:20,672 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:47:20,672 copying limix_inference/cov/test/test_eye_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:47:20,672 copying limix_inference/cov/test/test_linear_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:47:20,672 copying limix_inference/cov/test/test_sum_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:47:20,672 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:47:20,672 copying limix_inference/lmm/_fastlmm/test/test_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:47:20,672 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:47:20,672 copying limix_inference/lmm/_slowlmm/test/test_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:47:20,673 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:47:20,673 copying limix_inference/glmm/_ep/test/test_bernoulli.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:47:20,673 copying limix_inference/glmm/_ep/test/test_binomial.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:47:20,673 copying limix_inference/glmm/_ep/test/test_poisson.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:47:20,673 running build_ext 2025-09-08T06:47:20,673 generating cffi module 'build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c' 2025-09-08T06:47:20,673 creating build/temp.linux-armv7l-cpython-313 2025-09-08T06:47:20,992 building 'limix_inference.liknorm._ffi' extension 2025-09-08T06:47:20,993 creating build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313 2025-09-08T06:47:20,993 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include -I/usr/include/python3.13 -c build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c -o build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.o 2025-09-08T06:47:21,262 build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c:574:14: fatal error: liknorm/liknorm.h: No such file or directory 2025-09-08T06:47:21,263 574 | #include "liknorm/liknorm.h" 2025-09-08T06:47:21,263 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T06:47:21,263 compilation terminated. 2025-09-08T06:47:21,266 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T06:47:21,429 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T06:47:21,441 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T06:47:21,441 exec(compile('"'"''"'"''"'"' 2025-09-08T06:47:21,441 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:47:21,441 # 2025-09-08T06:47:21,441 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T06:47:21,441 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T06:47:21,441 # - It provides a clear error message when setuptools is not installed. 2025-09-08T06:47:21,441 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T06:47:21,441 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T06:47:21,441 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T06:47:21,441 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T06:47:21,441 import os, sys, tokenize, traceback 2025-09-08T06:47:21,441 2025-09-08T06:47:21,441 try: 2025-09-08T06:47:21,441 import setuptools 2025-09-08T06:47:21,441 except ImportError: 2025-09-08T06:47:21,441 print( 2025-09-08T06:47:21,441 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T06:47:21,441 "the build environment with exception:", 2025-09-08T06:47:21,441 file=sys.stderr, 2025-09-08T06:47:21,441 ) 2025-09-08T06:47:21,441 traceback.print_exc() 2025-09-08T06:47:21,441 sys.exit(1) 2025-09-08T06:47:21,441 2025-09-08T06:47:21,441 __file__ = %r 2025-09-08T06:47:21,441 sys.argv[0] = __file__ 2025-09-08T06:47:21,441 2025-09-08T06:47:21,441 if os.path.exists(__file__): 2025-09-08T06:47:21,441 filename = __file__ 2025-09-08T06:47:21,441 with tokenize.open(__file__) as f: 2025-09-08T06:47:21,441 setup_py_code = f.read() 2025-09-08T06:47:21,441 else: 2025-09-08T06:47:21,441 filename = "" 2025-09-08T06:47:21,441 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T06:47:21,441 2025-09-08T06:47:21,441 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:47:21,441 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-w6fo8vn1/limix-inference_90f7b03f5e0747d4869a24d985671d8f/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-whs0wruy[/] 2025-09-08T06:47:21,441 [bold magenta]cwd[/]: /tmp/pip-wheel-w6fo8vn1/limix-inference_90f7b03f5e0747d4869a24d985671d8f/ 2025-09-08T06:47:21,442 Building wheel for limix-inference (setup.py): finished with status 'error' 2025-09-08T06:47:21,442 ERROR: Failed building wheel for limix-inference 2025-09-08T06:47:21,443 Running setup.py clean for limix-inference 2025-09-08T06:47:21,444 Running command python setup.py clean 2025-09-08T06:47:22,425 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:47:22,425 !! 2025-09-08T06:47:22,425 ******************************************************************************** 2025-09-08T06:47:22,425 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:47:22,426 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:47:22,426 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:47:22,426 or your builds will no longer be supported. 2025-09-08T06:47:22,426 ******************************************************************************** 2025-09-08T06:47:22,426 !! 2025-09-08T06:47:22,426 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:47:22,510 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:47:22,510 warnings.warn(msg) 2025-09-08T06:47:23,035 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:47:23,035 !! 2025-09-08T06:47:23,036 ******************************************************************************** 2025-09-08T06:47:23,036 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:47:23,036 License :: OSI Approved :: MIT License 2025-09-08T06:47:23,036 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:47:23,036 ******************************************************************************** 2025-09-08T06:47:23,036 !! 2025-09-08T06:47:23,036 self._finalize_license_expression() 2025-09-08T06:47:23,108 running clean 2025-09-08T06:47:23,249 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:47:23,250 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:47:23,252 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T06:47:23,252 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T06:47:23,252 removing 'build' 2025-09-08T06:47:23,378 Failed to build limix-inference 2025-09-08T06:47:23,378 ERROR: Failed to build one or more wheels 2025-09-08T06:47:23,379 Exception information: 2025-09-08T06:47:23,379 Traceback (most recent call last): 2025-09-08T06:47:23,379 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T06:47:23,379 status = _inner_run() 2025-09-08T06:47:23,379 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T06:47:23,379 return self.run(options, args) 2025-09-08T06:47:23,379 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T06:47:23,379 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T06:47:23,379 return func(self, options, args) 2025-09-08T06:47:23,379 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T06:47:23,379 raise CommandError("Failed to build one or more wheels") 2025-09-08T06:47:23,379 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T06:47:23,383 Removed build tracker: '/tmp/pip-build-tracker-j6qjbybp'