2025-09-08T06:49:08,982 Created temporary directory: /tmp/pip-build-tracker-seafh0et 2025-09-08T06:49:08,983 Initialized build tracking at /tmp/pip-build-tracker-seafh0et 2025-09-08T06:49:08,983 Created build tracker: /tmp/pip-build-tracker-seafh0et 2025-09-08T06:49:08,983 Entered build tracker: /tmp/pip-build-tracker-seafh0et 2025-09-08T06:49:08,984 Created temporary directory: /tmp/pip-wheel-jao2hskr 2025-09-08T06:49:08,987 Created temporary directory: /tmp/pip-ephem-wheel-cache-smjr__u6 2025-09-08T06:49:09,050 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T06:49:09,052 2 location(s) to search for versions of limix-inference: 2025-09-08T06:49:09,052 * https://pypi.org/simple/limix-inference/ 2025-09-08T06:49:09,052 * https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:49:09,053 Fetching project page and analyzing links: https://pypi.org/simple/limix-inference/ 2025-09-08T06:49:09,053 Getting page https://pypi.org/simple/limix-inference/ 2025-09-08T06:49:09,054 Found index url https://pypi.org/simple/ 2025-09-08T06:49:09,125 Fetched page https://pypi.org/simple/limix-inference/ as application/vnd.pypi.simple.v1+json 2025-09-08T06:49:09,130 Found link https://files.pythonhosted.org/packages/2f/8b/58de27bc3ca08177dc6dd881665924c7a84460676a3c51cb8babe7c566e9/limix-inference-1.0.2.dev1.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2.dev1 2025-09-08T06:49:09,131 Found link https://files.pythonhosted.org/packages/26/fb/ef0d4f233d2924bcd50c0130cbde768c92f9ff985b19fa7b5a9b60f79404/limix-inference-1.0.2.dev2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2.dev2 2025-09-08T06:49:09,131 Found link https://files.pythonhosted.org/packages/53/e7/bbd64f5d5a69d001309eab399227436898368064bf4414f38f44d9a35d38/limix-inference-1.0.2.dev3.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2.dev3 2025-09-08T06:49:09,131 Found link https://files.pythonhosted.org/packages/24/86/6d5b17f7d90242e26a1b17e2b5b79ce801567feda2ca45757578ebdc48d1/limix-inference-1.0.2.dev4.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2.dev4 2025-09-08T06:49:09,131 Found link https://files.pythonhosted.org/packages/c2/e1/b042df0253b31583b3a6658c89050e66c7e7b6f1fb038fd6f9d52f51285b/limix-inference-1.0.2.dev5.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2.dev5 2025-09-08T06:49:09,132 Found link https://files.pythonhosted.org/packages/73/24/13172b0c6b09c5eaa607e8157d48b24fa4c6635d3c39e6eccf574a596077/limix-inference-1.0.2rc0.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2rc0 2025-09-08T06:49:09,132 Found link https://files.pythonhosted.org/packages/cf/b5/4e4decf10b7eb305450ceb4cc9b9be40a4783e2abbaeee0e49a216542db6/limix-inference-1.0.2rc1.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2rc1 2025-09-08T06:49:09,132 Found link https://files.pythonhosted.org/packages/05/36/dc8947547cb84436e86e1c7845eb0c232e3da227055f2d6d614b8d8a6f28/limix-inference-1.0.2rc2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2rc2 2025-09-08T06:49:09,132 Found link https://files.pythonhosted.org/packages/1f/a9/6401795d463c6cc4ae061fa7dfcf9656cf58e42e3b8f90917498406439f0/limix-inference-1.0.2rc3.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2rc3 2025-09-08T06:49:09,133 Found link https://files.pythonhosted.org/packages/0b/8a/750cfdae71af53c974ae61078f584520fb3d2a042ed57017278480cdd787/limix-inference-1.0.2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2 2025-09-08T06:49:09,133 Found link https://files.pythonhosted.org/packages/74/39/b0f4e1d92fa676c3f8c517e0e660ecd3f37f71d0d6afb90341d70221ab4a/limix-inference-1.0.3.dev0.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.3.dev0 2025-09-08T06:49:09,133 Found link 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https://files.pythonhosted.org/packages/15/13/4d41ac421df2679bce96b28e1d82ee70c3cebed001364a876aa866dbc02e/limix-inference-1.0.5.dev0.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.5.dev0 2025-09-08T06:49:09,134 Found link https://files.pythonhosted.org/packages/e7/93/319869046632d2f7281357239b0d2a552f15b963b532a20827b2f516bcc7/limix-inference-1.0.5rc2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.5rc2 2025-09-08T06:49:09,135 Found link https://files.pythonhosted.org/packages/ef/22/931c0b5f96e5bf76fd1c18f8409f3bba62aa26192a18d110085f883e8941/limix-inference-1.0.5.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.5 2025-09-08T06:49:09,135 Found link https://files.pythonhosted.org/packages/da/2e/229c9e464e22ba501eb487bc87306499717cb04150209d8f2db3711c124c/limix-inference-1.0.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.6 2025-09-08T06:49:09,135 Found link 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https://files.pythonhosted.org/packages/98/39/971375136c6018d27ced04b9e344cf85f4e3c1a669e33b3356e80dc45989/limix-inference-1.0.13.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.13 2025-09-08T06:49:09,137 Found link https://files.pythonhosted.org/packages/cc/56/9f10fa9e2965fda10b78df287a5576ed6efe8b8d8c375165bfaf56e5213d/limix-inference-1.0.14.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.14 2025-09-08T06:49:09,137 Found link https://files.pythonhosted.org/packages/84/89/05477413b3509de33ce70839d07f640c8b6e2284a8949dc4940ebee4bd95/limix-inference-1.0.15.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.15 2025-09-08T06:49:09,138 Found link https://files.pythonhosted.org/packages/12/83/9edd063f755274ac4523205409a457c8686d1aea35924dee9d88b14938bb/limix-inference-1.0.16.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.16 2025-09-08T06:49:09,138 Found link 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https://files.pythonhosted.org/packages/b8/e8/c54d52bdcd945b9a4c71fbbcf03797d190000ce37126c9f9ae3d46619dcf/limix-inference-1.1.2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.2 2025-09-08T06:49:09,139 Found link https://files.pythonhosted.org/packages/7e/09/2c88d1b16d0cde089f51eb54790c7ce0cdf5afc57592b7b55e8222203ce0/limix-inference-1.1.3.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.3 2025-09-08T06:49:09,139 Found link https://files.pythonhosted.org/packages/cf/21/4f4f8caaf4ebef6d5948528c8a0dcf5863ab819faf97123797c57fe2c675/limix-inference-1.1.4.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.4 2025-09-08T06:49:09,139 Found link https://files.pythonhosted.org/packages/e8/cd/0dddf22fb999f514e9d2f6a4a95a5ebe4fbf677fae4c3136d14d258ce1c8/limix-inference-1.1.5.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.5 2025-09-08T06:49:09,140 Found link https://files.pythonhosted.org/packages/37/90/968ce27b1e6d3350b72dbebe7cec3652856460991565a814850b63c91bc9/limix-inference-1.1.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.6 2025-09-08T06:49:09,140 Fetching project page and analyzing links: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:49:09,140 Getting page https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:49:09,141 Found index url https://www.piwheels.org/simple/ 2025-09-08T06:49:09,226 Fetched page https://www.piwheels.org/simple/limix-inference/ as text/html 2025-09-08T06:49:09,229 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.6-py3-none-any.whl#sha256=651f7582bd2a442b4225a69469bcda5fbf76a162526fbc7a729f3c500e3a1213 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:49:09,229 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.5-py3-none-any.whl#sha256=5bda56053fd5f49df45a3fa0355aa2e8eb7188b2034a5f8f3ef53a34d59f3c4c (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:49:09,229 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.4-py3-none-any.whl#sha256=8ac3fc4a2bb47fe430b536bd2ab999c9f1adf98649c81b84e3c3375bae68a7f5 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:49:09,230 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.3-py3-none-any.whl#sha256=ea94a7bf8b3e34500a9a155260fba2b2080259767f9520885d86caa0db8f82be (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:49:09,230 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.2-py3-none-any.whl#sha256=dd03018c1fab1132bb8de87bb4acad84ea64bc1ef102b6468e39cc3402fb53ff (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:49:09,230 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.1-py3-none-any.whl#sha256=e2cf1f0dceb70a5e3e8c599f7b837ff2e5f720a0b8eeadc3a753f67d5ced9884 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:49:09,230 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.0-py3-none-any.whl#sha256=91b43e3e511c0d914e6a452b861a3ac5f01283a03917ed6fe513e7e1d56a9f60 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:49:09,230 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev2-py3-none-any.whl#sha256=bef50a5f6deb5259a976b1356a18e19f2d77ab81d9e24ea0289eff832e394a68 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:49:09,230 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev1-py3-none-any.whl#sha256=94b2feb2718da440d09feb6bb06ec54ff2d5b2dec96f825271b8c3834da7e1cd (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:49:09,231 Skipping link: not a file: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:49:09,231 Skipping link: not a file: https://pypi.org/simple/limix-inference/ 2025-09-08T06:49:09,260 Given no hashes to check 1 links for project 'limix-inference': discarding no candidates 2025-09-08T06:49:09,262 Collecting limix-inference==1.0.6 2025-09-08T06:49:09,263 Created temporary directory: /tmp/pip-unpack-r5ft06h0 2025-09-08T06:49:09,563 Downloading limix-inference-1.0.6.tar.gz (25 kB) 2025-09-08T06:49:09,620 Added limix-inference==1.0.6 from https://files.pythonhosted.org/packages/da/2e/229c9e464e22ba501eb487bc87306499717cb04150209d8f2db3711c124c/limix-inference-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-seafh0et' 2025-09-08T06:49:09,621 Running setup.py (path:/tmp/pip-wheel-jao2hskr/limix-inference_b8c9e2dd15494e47b570c39b5f53591f/setup.py) egg_info for package limix-inference 2025-09-08T06:49:09,621 Created temporary directory: /tmp/pip-pip-egg-info-rs3xvwwn 2025-09-08T06:49:09,621 Preparing metadata (setup.py): started 2025-09-08T06:49:09,622 Running command python setup.py egg_info 2025-09-08T06:49:10,629 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:49:10,629 !! 2025-09-08T06:49:10,629 ******************************************************************************** 2025-09-08T06:49:10,630 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:49:10,630 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:49:10,630 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:49:10,630 or your builds will no longer be supported. 2025-09-08T06:49:10,630 ******************************************************************************** 2025-09-08T06:49:10,630 !! 2025-09-08T06:49:10,630 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:49:17,197 DEPRECATION: Building 'ncephes' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'ncephes'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T06:49:20,266 error: subprocess-exited-with-error 2025-09-08T06:49:20,266 × python setup.py bdist_wheel did not run successfully. 2025-09-08T06:49:20,266 │ exit code: 1 2025-09-08T06:49:20,266 ╰─> [60 lines of output] 2025-09-08T06:49:20,266 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:49:20,266 !! 2025-09-08T06:49:20,267 ******************************************************************************** 2025-09-08T06:49:20,267 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:49:20,267 License :: OSI Approved :: MIT License 2025-09-08T06:49:20,267 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:49:20,267 ******************************************************************************** 2025-09-08T06:49:20,267 !! 2025-09-08T06:49:20,268 self._finalize_license_expression() 2025-09-08T06:49:20,268 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:49:20,268 !! 2025-09-08T06:49:20,268 ******************************************************************************** 2025-09-08T06:49:20,268 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:49:20,268 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:49:20,268 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:49:20,268 or your builds will no longer be supported. 2025-09-08T06:49:20,268 ******************************************************************************** 2025-09-08T06:49:20,269 !! 2025-09-08T06:49:20,269 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:49:20,269 running bdist_wheel 2025-09-08T06:49:20,269 running build 2025-09-08T06:49:20,269 running build_py 2025-09-08T06:49:20,269 creating build/lib.linux-armv7l-cpython-313/ncephes 2025-09-08T06:49:20,269 copying ncephes/__init__.py -> build/lib.linux-armv7l-cpython-313/ncephes 2025-09-08T06:49:20,269 copying ncephes/_testit.py -> build/lib.linux-armv7l-cpython-313/ncephes 2025-09-08T06:49:20,269 creating build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T06:49:20,269 copying ncephes/test/test_bessel.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T06:49:20,269 copying ncephes/test/test_misc.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T06:49:20,270 copying ncephes/test/test_cprob.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T06:49:20,270 copying ncephes/test/test_numba.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T06:49:20,270 copying ncephes/test/__init__.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T06:49:20,270 copying ncephes/test/test_ellf.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T06:49:20,270 running egg_info 2025-09-08T06:49:20,270 writing ncephes.egg-info/PKG-INFO 2025-09-08T06:49:20,270 writing dependency_links to ncephes.egg-info/dependency_links.txt 2025-09-08T06:49:20,270 writing requirements to ncephes.egg-info/requires.txt 2025-09-08T06:49:20,270 writing top-level names to ncephes.egg-info/top_level.txt 2025-09-08T06:49:20,270 reading manifest file 'ncephes.egg-info/SOURCES.txt' 2025-09-08T06:49:20,270 reading manifest template 'MANIFEST.in' 2025-09-08T06:49:20,270 adding license file 'LICENSE' 2025-09-08T06:49:20,271 writing manifest file 'ncephes.egg-info/SOURCES.txt' 2025-09-08T06:49:20,271 copying ncephes/interface.h -> build/lib.linux-armv7l-cpython-313/ncephes 2025-09-08T06:49:20,271 running build_ext 2025-09-08T06:49:20,271 generating cffi module 'build/temp.linux-armv7l-cpython-313/ncephes._ffi.c' 2025-09-08T06:49:20,271 creating build/temp.linux-armv7l-cpython-313 2025-09-08T06:49:20,271 building 'ncephes._ffi' extension 2025-09-08T06:49:20,271 creating build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313 2025-09-08T06:49:20,271 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/python3.13 -c build/temp.linux-armv7l-cpython-313/ncephes._ffi.c -o build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313/ncephes._ffi.o 2025-09-08T06:49:20,271 build/temp.linux-armv7l-cpython-313/ncephes._ffi.c:573:10: fatal error: hcephes.h: No such file or directory 2025-09-08T06:49:20,271 573 | #include "hcephes.h" 2025-09-08T06:49:20,271 | ^~~~~~~~~~~ 2025-09-08T06:49:20,271 compilation terminated. 2025-09-08T06:49:20,272 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T06:49:20,272 [end of output] 2025-09-08T06:49:20,272 note: This error originates from a subprocess, and is likely not a problem with pip. 2025-09-08T06:49:20,272 ERROR: Failed building wheel for ncephes 2025-09-08T06:49:22,331 ERROR: Failed to build one or more wheels 2025-09-08T06:49:22,524 Traceback (most recent call last): 2025-09-08T06:49:22,525 File "/usr/local/lib/python3.13/dist-packages/setuptools/installer.py", line 121, in _fetch_build_egg_no_warn 2025-09-08T06:49:22,525 subprocess.check_call(cmd) 2025-09-08T06:49:22,525 ~~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T06:49:22,525 File "/usr/lib/python3.13/subprocess.py", line 419, in check_call 2025-09-08T06:49:22,525 raise CalledProcessError(retcode, cmd) 2025-09-08T06:49:22,525 subprocess.CalledProcessError: Command '['/usr/bin/python3', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmpgf7hn7if', '--quiet', 'ncephes']' returned non-zero exit status 1. 2025-09-08T06:49:22,526 The above exception was the direct cause of the following exception: 2025-09-08T06:49:22,526 Traceback (most recent call last): 2025-09-08T06:49:22,528 File "", line 2, in 2025-09-08T06:49:22,528 exec(compile(''' 2025-09-08T06:49:22,528 ~~~~^^^^^^^^^^^^ 2025-09-08T06:49:22,528 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:49:22,528 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,529 ...<32 lines>... 2025-09-08T06:49:22,529 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:49:22,529 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,529 ''' % ('/tmp/pip-wheel-jao2hskr/limix-inference_b8c9e2dd15494e47b570c39b5f53591f/setup.py',), "", "exec")) 2025-09-08T06:49:22,529 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,529 File "", line 35, in 2025-09-08T06:49:22,529 File "/tmp/pip-wheel-jao2hskr/limix-inference_b8c9e2dd15494e47b570c39b5f53591f/setup.py", line 69, in 2025-09-08T06:49:22,529 setup_package() 2025-09-08T06:49:22,530 ~~~~~~~~~~~~~^^ 2025-09-08T06:49:22,530 File "/tmp/pip-wheel-jao2hskr/limix-inference_b8c9e2dd15494e47b570c39b5f53591f/setup.py", line 62, in setup_package 2025-09-08T06:49:22,530 setup(**metadata) 2025-09-08T06:49:22,530 ~~~~~^^^^^^^^^^^^ 2025-09-08T06:49:22,530 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 114, in setup 2025-09-08T06:49:22,530 _install_setup_requires(attrs) 2025-09-08T06:49:22,530 ~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^ 2025-09-08T06:49:22,530 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 87, in _install_setup_requires 2025-09-08T06:49:22,531 _fetch_build_eggs(dist) 2025-09-08T06:49:22,531 ~~~~~~~~~~~~~~~~~^^^^^^ 2025-09-08T06:49:22,531 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 92, in _fetch_build_eggs 2025-09-08T06:49:22,531 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:49:22,531 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,531 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 766, in fetch_build_eggs 2025-09-08T06:49:22,531 return _fetch_build_eggs(self, requires) 2025-09-08T06:49:22,531 File "/usr/local/lib/python3.13/dist-packages/setuptools/installer.py", line 54, in _fetch_build_eggs 2025-09-08T06:49:22,532 resolved_dists = [_fetch_build_egg_no_warn(dist, req) for req in needed_reqs] 2025-09-08T06:49:22,532 ~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2025-09-08T06:49:22,532 File "/usr/local/lib/python3.13/dist-packages/setuptools/installer.py", line 123, in _fetch_build_egg_no_warn 2025-09-08T06:49:22,532 raise DistutilsError(str(e)) from e 2025-09-08T06:49:22,532 distutils.errors.DistutilsError: Command '['/usr/bin/python3', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmpgf7hn7if', '--quiet', 'ncephes']' returned non-zero exit status 1. 2025-09-08T06:49:22,623 ERROR: python setup.py egg_info exited with 1 2025-09-08T06:49:22,635 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T06:49:22,635 exec(compile('"'"''"'"''"'"' 2025-09-08T06:49:22,635 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:49:22,635 # 2025-09-08T06:49:22,635 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T06:49:22,635 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T06:49:22,635 # - It provides a clear error message when setuptools is not installed. 2025-09-08T06:49:22,635 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T06:49:22,635 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T06:49:22,635 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T06:49:22,635 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T06:49:22,635 import os, sys, tokenize, traceback 2025-09-08T06:49:22,635 2025-09-08T06:49:22,635 try: 2025-09-08T06:49:22,635 import setuptools 2025-09-08T06:49:22,635 except ImportError: 2025-09-08T06:49:22,635 print( 2025-09-08T06:49:22,635 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T06:49:22,635 "the build environment with exception:", 2025-09-08T06:49:22,635 file=sys.stderr, 2025-09-08T06:49:22,635 ) 2025-09-08T06:49:22,635 traceback.print_exc() 2025-09-08T06:49:22,635 sys.exit(1) 2025-09-08T06:49:22,635 2025-09-08T06:49:22,635 __file__ = %r 2025-09-08T06:49:22,635 sys.argv[0] = __file__ 2025-09-08T06:49:22,635 2025-09-08T06:49:22,635 if os.path.exists(__file__): 2025-09-08T06:49:22,635 filename = __file__ 2025-09-08T06:49:22,635 with tokenize.open(__file__) as f: 2025-09-08T06:49:22,635 setup_py_code = f.read() 2025-09-08T06:49:22,635 else: 2025-09-08T06:49:22,635 filename = "" 2025-09-08T06:49:22,635 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T06:49:22,635 2025-09-08T06:49:22,635 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:49:22,635 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-jao2hskr/limix-inference_b8c9e2dd15494e47b570c39b5f53591f/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-rs3xvwwn[/] 2025-09-08T06:49:22,635 [bold magenta]cwd[/]: /tmp/pip-wheel-jao2hskr/limix-inference_b8c9e2dd15494e47b570c39b5f53591f/ 2025-09-08T06:49:22,635 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T06:49:22,636 ERROR: metadata generation failed 2025-09-08T06:49:22,641 Exception information: 2025-09-08T06:49:22,641 Traceback (most recent call last): 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T06:49:22,641 call_subprocess( 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~~~^ 2025-09-08T06:49:22,641 args, 2025-09-08T06:49:22,641 ^^^^^ 2025-09-08T06:49:22,641 ...<2 lines>... 2025-09-08T06:49:22,641 spinner=spinner, 2025-09-08T06:49:22,641 ^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 ) 2025-09-08T06:49:22,641 ^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T06:49:22,641 raise error 2025-09-08T06:49:22,641 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T06:49:22,641 2025-09-08T06:49:22,641 The above exception was the direct cause of the following exception: 2025-09-08T06:49:22,641 2025-09-08T06:49:22,641 Traceback (most recent call last): 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T06:49:22,641 status = _inner_run() 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T06:49:22,641 return self.run(options, args) 2025-09-08T06:49:22,641 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T06:49:22,641 return func(self, options, args) 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T06:49:22,641 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T06:49:22,641 result = self._result = resolver.resolve( 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~~~~^ 2025-09-08T06:49:22,641 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T06:49:22,641 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 ) 2025-09-08T06:49:22,641 ^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T06:49:22,641 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T06:49:22,641 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T06:49:22,641 if not criterion.candidates: 2025-09-08T06:49:22,641 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T06:49:22,641 return bool(self._sequence) 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T06:49:22,641 self._bool = any(self) 2025-09-08T06:49:22,641 ~~~^^^^^^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T06:49:22,641 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T06:49:22,641 ^^^^^^^^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T06:49:22,641 candidate = func() 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T06:49:22,641 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T06:49:22,641 link, template, name, version 2025-09-08T06:49:22,641 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 ) 2025-09-08T06:49:22,641 ^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T06:49:22,641 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~^ 2025-09-08T06:49:22,641 link, 2025-09-08T06:49:22,641 ^^^^^ 2025-09-08T06:49:22,641 ...<3 lines>... 2025-09-08T06:49:22,641 version=version, 2025-09-08T06:49:22,641 ^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 ) 2025-09-08T06:49:22,641 ^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T06:49:22,641 super().__init__( 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~~~~^ 2025-09-08T06:49:22,641 link=link, 2025-09-08T06:49:22,641 ^^^^^^^^^^ 2025-09-08T06:49:22,641 ...<4 lines>... 2025-09-08T06:49:22,641 version=version, 2025-09-08T06:49:22,641 ^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 ) 2025-09-08T06:49:22,641 ^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T06:49:22,641 self.dist = self._prepare() 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~^^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T06:49:22,641 dist = self._prepare_distribution() 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T06:49:22,641 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T06:49:22,641 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T06:49:22,641 dist = _get_prepared_distribution( 2025-09-08T06:49:22,641 req, 2025-09-08T06:49:22,641 ...<3 lines>... 2025-09-08T06:49:22,641 self.check_build_deps, 2025-09-08T06:49:22,641 ) 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T06:49:22,641 abstract_dist.prepare_distribution_metadata( 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T06:49:22,641 finder, build_isolation, check_build_deps 2025-09-08T06:49:22,641 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 ) 2025-09-08T06:49:22,641 ^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T06:49:22,641 self.req.prepare_metadata() 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T06:49:22,641 self.metadata_directory = generate_metadata_legacy( 2025-09-08T06:49:22,641 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T06:49:22,641 build_env=self.build_env, 2025-09-08T06:49:22,641 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 ...<3 lines>... 2025-09-08T06:49:22,641 details=details, 2025-09-08T06:49:22,641 ^^^^^^^^^^^^^^^^ 2025-09-08T06:49:22,641 ) 2025-09-08T06:49:22,641 ^ 2025-09-08T06:49:22,641 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T06:49:22,641 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T06:49:22,641 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T06:49:22,665 Removed limix-inference==1.0.6 from https://files.pythonhosted.org/packages/da/2e/229c9e464e22ba501eb487bc87306499717cb04150209d8f2db3711c124c/limix-inference-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-seafh0et' 2025-09-08T06:49:22,665 Removed build tracker: '/tmp/pip-build-tracker-seafh0et'