2025-09-08T07:02:11,737 Created temporary directory: /tmp/pip-build-tracker-5_cl_yta 2025-09-08T07:02:11,738 Initialized build tracking at /tmp/pip-build-tracker-5_cl_yta 2025-09-08T07:02:11,738 Created build tracker: /tmp/pip-build-tracker-5_cl_yta 2025-09-08T07:02:11,738 Entered build tracker: /tmp/pip-build-tracker-5_cl_yta 2025-09-08T07:02:11,738 Created temporary directory: /tmp/pip-wheel-vfe0nfc1 2025-09-08T07:02:11,741 Created temporary directory: /tmp/pip-ephem-wheel-cache-uyzvswln 2025-09-08T07:02:11,798 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T07:02:11,800 2 location(s) to search for versions of mikado: 2025-09-08T07:02:11,800 * https://pypi.org/simple/mikado/ 2025-09-08T07:02:11,800 * https://www.piwheels.org/simple/mikado/ 2025-09-08T07:02:11,800 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2025-09-08T07:02:11,801 Getting page https://pypi.org/simple/mikado/ 2025-09-08T07:02:11,802 Found index url https://pypi.org/simple/ 2025-09-08T07:02:11,872 Fetched page https://pypi.org/simple/mikado/ as application/vnd.pypi.simple.v1+json 2025-09-08T07:02:11,875 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2025-09-08T07:02:11,876 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2025-09-08T07:02:11,876 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2025-09-08T07:02:11,876 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0 2025-09-08T07:02:11,877 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.1 2025-09-08T07:02:11,877 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2 2025-09-08T07:02:11,877 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.1 2025-09-08T07:02:11,877 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.2 2025-09-08T07:02:11,877 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/mikado/) 2025-09-08T07:02:11,878 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.4 2025-09-08T07:02:11,878 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc1 2025-09-08T07:02:11,878 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc2 2025-09-08T07:02:11,879 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2025-09-08T07:02:11,879 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2025-09-08T07:02:11,879 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2025-09-08T07:02:11,879 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2025-09-08T07:02:11,880 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2025-09-08T07:02:11,880 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2025-09-08T07:02:11,880 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2025-09-08T07:02:11,880 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2025-09-08T07:02:11,880 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2025-09-08T07:02:11,881 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2025-09-08T07:02:11,881 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2025-09-08T07:02:11,881 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2025-09-08T07:02:11,882 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2025-09-08T07:02:11,882 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2025-09-08T07:02:11,882 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2025-09-08T07:02:11,882 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2025-09-08T07:02:11,883 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2025-09-08T07:02:11,883 Getting page https://www.piwheels.org/simple/mikado/ 2025-09-08T07:02:11,884 Found index url https://www.piwheels.org/simple/ 2025-09-08T07:02:11,989 Fetched page https://www.piwheels.org/simple/mikado/ as text/html 2025-09-08T07:02:12,020 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,020 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,021 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,021 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,021 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,021 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,021 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,021 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,021 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,022 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,022 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,022 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,022 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,022 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,022 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,022 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,023 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,023 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,023 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,023 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,023 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,023 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,023 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,024 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,024 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv6l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,024 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv7l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,024 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv6l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,024 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv7l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:02:12,024 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.3-cp37-cp37m-linux_armv6l.whl#sha256=0ca20e373c9e6bb78e52fcc63bd76ce297019dc0398a342552de37e05393ec0d (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T07:02:12,024 Skipping link: No binaries permitted for mikado: 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https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp37-cp37m-linux_armv7l.whl#sha256=2f415150126f13a761de3741431aeeeedc7de2714bf481b1082993ad77d07529 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T07:02:12,028 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=d470f2f06b5088be5229fff70d2f2453c550acccfed8693854613b383c3c2ceb (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T07:02:12,028 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=d470f2f06b5088be5229fff70d2f2453c550acccfed8693854613b383c3c2ceb (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T07:02:12,028 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,030 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc2-cp39-cp39-linux_armv7l.whl#sha256=27d920e52482eb28c4c4915cd13022c57b6a2e9b24ab9cbb9c6fb84a57c86006 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,030 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp35-cp35m-linux_armv6l.whl#sha256=f0c146400dbcde6c6b2b4691d3519ee99863e2f9a5a53473bb658567431c4e58 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,030 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp35-cp35m-linux_armv7l.whl#sha256=f0c146400dbcde6c6b2b4691d3519ee99863e2f9a5a53473bb658567431c4e58 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,030 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv7l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv7l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv6l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp311-cp311-linux_armv6l.whl#sha256=f046bdaea4a2cf6889ea15964c360551b58427311379d68e8d438b673e4f4d97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp311-cp311-linux_armv7l.whl#sha256=f046bdaea4a2cf6889ea15964c360551b58427311379d68e8d438b673e4f4d97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv7l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,033 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp311-cp311-linux_armv6l.whl#sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,033 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp311-cp311-linux_armv7l.whl#sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,033 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,033 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,033 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,033 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,033 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv6l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv7l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv7l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv6l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv7l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv7l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv6l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv7l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp39-cp39-linux_armv6l.whl#sha256=dfcb87da8afbf3806c9ba6ac00eb3fcc32717eecd66839e3981624e0c83102b9 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp39-cp39-linux_armv7l.whl#sha256=dfcb87da8afbf3806c9ba6ac00eb3fcc32717eecd66839e3981624e0c83102b9 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv6l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv7l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,036 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv6l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,036 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv7l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,036 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv6l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,036 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv7l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,036 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv7l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,036 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv6l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,036 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv6l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv7l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv6l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv6l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv7l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv6l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv7l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,039 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b5.post1-cp313-cp313-linux_armv6l.whl#sha256=a484381081c56e7106e45ed0d641845f6c7386588a9564360e66d4259c2a30c2 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,039 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b5.post1-cp313-cp313-linux_armv7l.whl#sha256=a484381081c56e7106e45ed0d641845f6c7386588a9564360e66d4259c2a30c2 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:02:12,039 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2025-09-08T07:02:12,039 Skipping link: not a file: https://pypi.org/simple/mikado/ 2025-09-08T07:02:12,063 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2025-09-08T07:02:12,064 Collecting mikado==1.0.0b9 2025-09-08T07:02:12,066 Created temporary directory: /tmp/pip-unpack-kinjqczp 2025-09-08T07:02:12,700 Downloading Mikado-1.0.0b9.tar.gz (16.8 MB) 2025-09-08T07:02:15,742 Added mikado==1.0.0b9 from https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz to build tracker '/tmp/pip-build-tracker-5_cl_yta' 2025-09-08T07:02:15,743 Running setup.py (path:/tmp/pip-wheel-vfe0nfc1/mikado_2cf3f1d3ae2b48778b2a190d92dadcd9/setup.py) egg_info for package mikado 2025-09-08T07:02:15,744 Created temporary directory: /tmp/pip-pip-egg-info-nge6bxrz 2025-09-08T07:02:15,744 Preparing metadata (setup.py): started 2025-09-08T07:02:15,745 Running command python setup.py egg_info 2025-09-08T07:02:18,892 Compiling Mikado/utilities/overlap.pyx because it changed. 2025-09-08T07:02:18,893 Compiling Mikado/scales/f1.pyx because it changed. 2025-09-08T07:02:18,893 Compiling Mikado/scales/contrast.pyx because it changed. 2025-09-08T07:02:18,893 Compiling Mikado/utilities/intervaltree.pyx because it changed. 2025-09-08T07:02:18,893 [1/4] Cythonizing Mikado/scales/contrast.pyx 2025-09-08T07:02:18,893 [2/4] Cythonizing Mikado/scales/f1.pyx 2025-09-08T07:02:18,893 [3/4] Cythonizing Mikado/utilities/intervaltree.pyx 2025-09-08T07:02:18,893 [4/4] Cythonizing Mikado/utilities/overlap.pyx 2025-09-08T07:02:19,066 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T07:02:19,066 warnings.warn(msg) 2025-09-08T07:02:19,290 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T07:02:19,290 !! 2025-09-08T07:02:19,290 ******************************************************************************** 2025-09-08T07:02:19,290 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T07:02:19,290 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-09-08T07:02:19,291 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T07:02:19,291 ******************************************************************************** 2025-09-08T07:02:19,291 !! 2025-09-08T07:02:19,291 self._finalize_license_expression() 2025-09-08T07:02:19,363 running egg_info 2025-09-08T07:02:19,436 creating /tmp/pip-pip-egg-info-nge6bxrz/Mikado.egg-info 2025-09-08T07:02:19,437 writing /tmp/pip-pip-egg-info-nge6bxrz/Mikado.egg-info/PKG-INFO 2025-09-08T07:02:19,440 writing dependency_links to /tmp/pip-pip-egg-info-nge6bxrz/Mikado.egg-info/dependency_links.txt 2025-09-08T07:02:19,441 writing entry points to /tmp/pip-pip-egg-info-nge6bxrz/Mikado.egg-info/entry_points.txt 2025-09-08T07:02:19,442 writing requirements to /tmp/pip-pip-egg-info-nge6bxrz/Mikado.egg-info/requires.txt 2025-09-08T07:02:19,443 writing top-level names to /tmp/pip-pip-egg-info-nge6bxrz/Mikado.egg-info/top_level.txt 2025-09-08T07:02:19,443 writing manifest file '/tmp/pip-pip-egg-info-nge6bxrz/Mikado.egg-info/SOURCES.txt' 2025-09-08T07:02:19,820 reading manifest file '/tmp/pip-pip-egg-info-nge6bxrz/Mikado.egg-info/SOURCES.txt' 2025-09-08T07:02:19,821 reading manifest template 'MANIFEST.in' 2025-09-08T07:02:19,866 warning: no files found matching '*py' under directory 'bin' 2025-09-08T07:02:19,900 adding license file 'AUTHORS' 2025-09-08T07:02:19,915 writing manifest file '/tmp/pip-pip-egg-info-nge6bxrz/Mikado.egg-info/SOURCES.txt' 2025-09-08T07:02:20,224 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T07:02:20,229 Source in /tmp/pip-wheel-vfe0nfc1/mikado_2cf3f1d3ae2b48778b2a190d92dadcd9 has version 1.0.0b9, which satisfies requirement mikado==1.0.0b9 from https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz 2025-09-08T07:02:20,229 Removed mikado==1.0.0b9 from https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz from build tracker '/tmp/pip-build-tracker-5_cl_yta' 2025-09-08T07:02:20,238 Created temporary directory: /tmp/pip-unpack-vgiyvh7h 2025-09-08T07:02:20,238 Created temporary directory: /tmp/pip-unpack-l7m8vew9 2025-09-08T07:02:20,238 Building wheels for collected packages: mikado 2025-09-08T07:02:20,240 Created temporary directory: /tmp/pip-wheel-dkukt8wk 2025-09-08T07:02:20,240 DEPRECATION: Building 'mikado' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'mikado'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T07:02:20,241 Building wheel for mikado (setup.py): started 2025-09-08T07:02:20,242 Destination directory: /tmp/pip-wheel-dkukt8wk 2025-09-08T07:02:20,242 Running command python setup.py bdist_wheel 2025-09-08T07:02:21,433 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T07:02:21,433 warnings.warn(msg) 2025-09-08T07:02:21,649 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T07:02:21,649 !! 2025-09-08T07:02:21,649 ******************************************************************************** 2025-09-08T07:02:21,649 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T07:02:21,649 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-09-08T07:02:21,650 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T07:02:21,650 ******************************************************************************** 2025-09-08T07:02:21,650 !! 2025-09-08T07:02:21,650 self._finalize_license_expression() 2025-09-08T07:02:21,651 running bdist_wheel 2025-09-08T07:02:22,006 running build 2025-09-08T07:02:22,007 running build_py 2025-09-08T07:02:22,082 creating build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T07:02:22,082 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T07:02:22,083 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T07:02:22,083 creating build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:02:22,084 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:02:22,084 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:02:22,085 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:02:22,086 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:02:22,086 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:02:22,087 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:02:22,087 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:02:22,088 creating build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:02:22,088 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:02:22,089 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:02:22,089 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:02:22,090 creating build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:02:22,090 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:02:22,091 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:02:22,091 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:02:22,093 creating build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,093 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,093 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,094 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,095 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,095 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,096 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,096 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,097 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,097 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,098 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,098 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,099 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,099 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,100 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,101 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,101 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,102 copying Mikado/tests/test_excluded.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,102 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,103 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,103 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,104 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,105 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,105 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,106 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,106 copying Mikado/tests/test_abstractlocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,107 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,107 creating build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:02:22,108 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:02:22,109 creating build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,109 copying Mikado/loci/transcript.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,110 copying Mikado/loci/transcriptchecker.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,110 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,111 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,112 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,112 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,113 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,113 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,114 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,115 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,115 copying Mikado/loci/clique_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,116 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:02:22,116 creating build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T07:02:22,117 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T07:02:22,117 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T07:02:22,118 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T07:02:22,119 creating build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T07:02:22,119 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T07:02:22,120 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T07:02:22,120 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T07:02:22,121 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T07:02:22,122 creating build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:02:22,122 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:02:22,123 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:02:22,123 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:02:22,124 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:02:22,124 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:02:22,125 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:02:22,125 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:02:22,126 creating build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,126 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,127 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,127 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,128 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,129 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,129 creating build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T07:02:22,130 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T07:02:22,130 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T07:02:22,131 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T07:02:22,131 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T07:02:22,132 creating build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods 2025-09-08T07:02:22,132 copying Mikado/loci/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods 2025-09-08T07:02:22,133 copying Mikado/loci/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods 2025-09-08T07:02:22,133 copying Mikado/loci/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods 2025-09-08T07:02:22,134 copying Mikado/loci/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods 2025-09-08T07:02:22,135 copying Mikado/loci/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods 2025-09-08T07:02:22,136 creating build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:02:22,136 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:02:22,136 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:02:22,137 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:02:22,137 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:02:22,138 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:02:22,138 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:02:22,139 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:02:22,139 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:02:22,140 creating build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:02:22,141 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:02:22,141 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:02:22,142 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:02:22,142 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:02:22,143 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:02:22,143 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:02:22,144 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:02:22,144 running egg_info 2025-09-08T07:02:22,216 writing Mikado.egg-info/PKG-INFO 2025-09-08T07:02:22,219 writing dependency_links to Mikado.egg-info/dependency_links.txt 2025-09-08T07:02:22,220 writing entry points to Mikado.egg-info/entry_points.txt 2025-09-08T07:02:22,222 writing requirements to Mikado.egg-info/requires.txt 2025-09-08T07:02:22,222 writing top-level names to Mikado.egg-info/top_level.txt 2025-09-08T07:02:22,306 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2025-09-08T07:02:22,334 reading manifest template 'MANIFEST.in' 2025-09-08T07:02:22,388 warning: no files found matching '*py' under directory 'bin' 2025-09-08T07:02:22,423 adding license file 'AUTHORS' 2025-09-08T07:02:22,447 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2025-09-08T07:02:22,458 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.configuration.scoring_files' is absent from the `packages` configuration. 2025-09-08T07:02:22,458 !! 2025-09-08T07:02:22,458 ******************************************************************************** 2025-09-08T07:02:22,458 ############################ 2025-09-08T07:02:22,458 # Package would be ignored # 2025-09-08T07:02:22,458 ############################ 2025-09-08T07:02:22,458 Python recognizes 'Mikado.configuration.scoring_files' as an importable package[^1], 2025-09-08T07:02:22,458 but it is absent from setuptools' `packages` configuration. 2025-09-08T07:02:22,459 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T07:02:22,459 package, please make sure that 'Mikado.configuration.scoring_files' is explicitly added 2025-09-08T07:02:22,459 to the `packages` configuration field. 2025-09-08T07:02:22,459 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T07:02:22,459 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T07:02:22,459 instead of `find_packages(...)`/`find:`). 2025-09-08T07:02:22,459 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T07:02:22,459 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T07:02:22,460 If you don't want 'Mikado.configuration.scoring_files' to be distributed and are 2025-09-08T07:02:22,460 already explicitly excluding 'Mikado.configuration.scoring_files' via 2025-09-08T07:02:22,460 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T07:02:22,460 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T07:02:22,460 combination with a more fine grained `package-data` configuration. 2025-09-08T07:02:22,460 You can read more about "package data files" on setuptools documentation page: 2025-09-08T07:02:22,460 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T07:02:22,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T07:02:22,461 even if it does not contain any `.py` files. 2025-09-08T07:02:22,461 On the other hand, currently there is no concept of package data 2025-09-08T07:02:22,461 directory, all directories are treated like packages. 2025-09-08T07:02:22,461 ******************************************************************************** 2025-09-08T07:02:22,461 !! 2025-09-08T07:02:22,461 check.warn(importable) 2025-09-08T07:02:22,461 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.tests.__pycache__' is absent from the `packages` configuration. 2025-09-08T07:02:22,461 !! 2025-09-08T07:02:22,462 ******************************************************************************** 2025-09-08T07:02:22,462 ############################ 2025-09-08T07:02:22,462 # Package would be ignored # 2025-09-08T07:02:22,462 ############################ 2025-09-08T07:02:22,462 Python recognizes 'Mikado.tests.__pycache__' as an importable package[^1], 2025-09-08T07:02:22,462 but it is absent from setuptools' `packages` configuration. 2025-09-08T07:02:22,462 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T07:02:22,462 package, please make sure that 'Mikado.tests.__pycache__' is explicitly added 2025-09-08T07:02:22,462 to the `packages` configuration field. 2025-09-08T07:02:22,463 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T07:02:22,463 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T07:02:22,463 instead of `find_packages(...)`/`find:`). 2025-09-08T07:02:22,463 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T07:02:22,463 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T07:02:22,463 If you don't want 'Mikado.tests.__pycache__' to be distributed and are 2025-09-08T07:02:22,463 already explicitly excluding 'Mikado.tests.__pycache__' via 2025-09-08T07:02:22,463 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T07:02:22,463 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T07:02:22,464 combination with a more fine grained `package-data` configuration. 2025-09-08T07:02:22,464 You can read more about "package data files" on setuptools documentation page: 2025-09-08T07:02:22,464 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T07:02:22,464 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T07:02:22,464 even if it does not contain any `.py` files. 2025-09-08T07:02:22,464 On the other hand, currently there is no concept of package data 2025-09-08T07:02:22,464 directory, all directories are treated like packages. 2025-09-08T07:02:22,464 ******************************************************************************** 2025-09-08T07:02:22,465 !! 2025-09-08T07:02:22,465 check.warn(importable) 2025-09-08T07:02:22,465 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.tests.fusion_test' is absent from the `packages` configuration. 2025-09-08T07:02:22,465 !! 2025-09-08T07:02:22,465 ******************************************************************************** 2025-09-08T07:02:22,465 ############################ 2025-09-08T07:02:22,465 # Package would be ignored # 2025-09-08T07:02:22,465 ############################ 2025-09-08T07:02:22,466 Python recognizes 'Mikado.tests.fusion_test' as an importable package[^1], 2025-09-08T07:02:22,466 but it is absent from setuptools' `packages` configuration. 2025-09-08T07:02:22,466 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T07:02:22,466 package, please make sure that 'Mikado.tests.fusion_test' is explicitly added 2025-09-08T07:02:22,466 to the `packages` configuration field. 2025-09-08T07:02:22,466 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T07:02:22,466 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T07:02:22,466 instead of `find_packages(...)`/`find:`). 2025-09-08T07:02:22,466 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T07:02:22,467 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T07:02:22,467 If you don't want 'Mikado.tests.fusion_test' to be distributed and are 2025-09-08T07:02:22,467 already explicitly excluding 'Mikado.tests.fusion_test' via 2025-09-08T07:02:22,467 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T07:02:22,467 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T07:02:22,467 combination with a more fine grained `package-data` configuration. 2025-09-08T07:02:22,467 You can read more about "package data files" on setuptools documentation page: 2025-09-08T07:02:22,467 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T07:02:22,468 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T07:02:22,468 even if it does not contain any `.py` files. 2025-09-08T07:02:22,468 On the other hand, currently there is no concept of package data 2025-09-08T07:02:22,468 directory, all directories are treated like packages. 2025-09-08T07:02:22,468 ******************************************************************************** 2025-09-08T07:02:22,468 !! 2025-09-08T07:02:22,468 check.warn(importable) 2025-09-08T07:02:22,473 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:02:22,473 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:02:22,474 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:02:22,474 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:02:22,475 creating build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:02:22,475 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:02:22,476 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:02:22,476 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:02:22,477 copying Mikado/configuration/scoring_files/spombe.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:02:22,477 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:02:22,478 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:02:22,482 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:02:22,482 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:02:22,484 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:02:22,485 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:02:22,485 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,514 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,515 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,515 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,516 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,516 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,518 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,523 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,529 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,530 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,531 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,531 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,532 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,532 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,533 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,534 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,534 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:02:22,558 creating build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,558 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,559 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,559 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,560 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,561 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,561 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,562 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,562 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,563 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,564 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,564 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,565 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,565 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,566 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,566 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,567 copying Mikado/tests/__pycache__/test_abstractlocus.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,568 copying Mikado/tests/__pycache__/test_abstractlocus.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,568 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,569 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,569 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,570 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,570 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,571 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,571 copying Mikado/tests/__pycache__/test_excluded.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,572 copying Mikado/tests/__pycache__/test_excluded.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,572 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,573 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,573 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,574 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,574 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,575 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,575 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,576 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,576 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,577 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,577 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,578 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,579 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,579 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,580 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,580 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,581 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,581 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,582 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,582 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,583 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,584 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,584 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,585 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,586 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,586 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,587 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:02:22,587 creating build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T07:02:22,588 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T07:02:22,588 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T07:02:22,589 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T07:02:22,589 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:02:22,590 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:02:22,590 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:02:22,591 copying Mikado/daijin/local.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:02:22,591 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:02:22,592 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:02:22,593 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,595 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,596 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,596 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,598 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,599 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:22,603 running build_ext 2025-09-08T07:02:22,610 building 'Mikado.utilities.overlap' extension 2025-09-08T07:02:22,611 creating build/temp.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:02:22,611 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-cpython-313/Mikado/utilities/overlap.o 2025-09-08T07:02:26,442 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/utilities/overlap.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so 2025-09-08T07:02:26,559 building 'Mikado.scales.f1' extension 2025-09-08T07:02:26,560 creating build/temp.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:02:26,560 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-cpython-313/Mikado/scales/f1.o 2025-09-08T07:02:29,912 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/scales/f1.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so 2025-09-08T07:02:30,075 building 'Mikado.scales.contrast' extension 2025-09-08T07:02:30,075 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-cpython-313/Mikado/scales/contrast.o 2025-09-08T07:02:42,581 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/scales/contrast.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so 2025-09-08T07:02:42,706 building 'Mikado.utilities.intervaltree' extension 2025-09-08T07:02:42,707 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.o 2025-09-08T07:03:00,096 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so 2025-09-08T07:03:00,233 running build_scripts 2025-09-08T07:03:00,234 creating build/scripts-3.13 2025-09-08T07:03:00,234 copying and adjusting util/trim_long_introns.py -> build/scripts-3.13 2025-09-08T07:03:00,235 copying and adjusting util/asm_collect.py -> build/scripts-3.13 2025-09-08T07:03:00,235 copying and adjusting util/bam2gtf.py -> build/scripts-3.13 2025-09-08T07:03:00,236 copying and adjusting util/self_training.py -> build/scripts-3.13 2025-09-08T07:03:00,236 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.13 2025-09-08T07:03:00,237 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.13 2025-09-08T07:03:00,237 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.13 2025-09-08T07:03:00,238 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.13 2025-09-08T07:03:00,238 copying and adjusting util/align_collect.py -> build/scripts-3.13 2025-09-08T07:03:00,239 copying and adjusting util/grep.py -> build/scripts-3.13 2025-09-08T07:03:00,239 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.13 2025-09-08T07:03:00,240 copying and adjusting util/class_run.py -> build/scripts-3.13 2025-09-08T07:03:00,240 copying and adjusting util/split_fasta.py -> build/scripts-3.13 2025-09-08T07:03:00,241 copying and adjusting util/remove_from_embl.py -> build/scripts-3.13 2025-09-08T07:03:00,241 copying and adjusting util/analyse_metrics.py -> build/scripts-3.13 2025-09-08T07:03:00,242 copying and adjusting util/create_model.py -> build/scripts-3.13 2025-09-08T07:03:00,242 changing mode of build/scripts-3.13/trim_long_introns.py from 644 to 755 2025-09-08T07:03:00,242 changing mode of build/scripts-3.13/asm_collect.py from 644 to 755 2025-09-08T07:03:00,243 changing mode of build/scripts-3.13/bam2gtf.py from 644 to 755 2025-09-08T07:03:00,243 changing mode of build/scripts-3.13/self_training.py from 644 to 755 2025-09-08T07:03:00,243 changing mode of build/scripts-3.13/merge_junction_bed12.py from 644 to 755 2025-09-08T07:03:00,243 changing mode of build/scripts-3.13/getFastaFromIds.py from 644 to 755 2025-09-08T07:03:00,243 changing mode of build/scripts-3.13/gffjunc_to_bed12.py from 644 to 755 2025-09-08T07:03:00,243 changing mode of build/scripts-3.13/sanitize_blast_db.py from 644 to 755 2025-09-08T07:03:00,243 changing mode of build/scripts-3.13/align_collect.py from 644 to 755 2025-09-08T07:03:00,244 changing mode of build/scripts-3.13/grep.py from 644 to 755 2025-09-08T07:03:00,244 changing mode of build/scripts-3.13/add_transcript_feature_to_gtf.py from 644 to 755 2025-09-08T07:03:00,244 changing mode of build/scripts-3.13/class_run.py from 644 to 755 2025-09-08T07:03:00,244 changing mode of build/scripts-3.13/split_fasta.py from 644 to 755 2025-09-08T07:03:00,244 changing mode of build/scripts-3.13/remove_from_embl.py from 644 to 755 2025-09-08T07:03:00,244 changing mode of build/scripts-3.13/analyse_metrics.py from 644 to 755 2025-09-08T07:03:00,244 changing mode of build/scripts-3.13/create_model.py from 644 to 755 2025-09-08T07:03:00,381 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-08T07:03:00,381 !! 2025-09-08T07:03:00,381 ******************************************************************************** 2025-09-08T07:03:00,381 Please avoid running ``setup.py`` directly. 2025-09-08T07:03:00,381 Instead, use pypa/build, pypa/installer or other 2025-09-08T07:03:00,381 standards-based tools. 2025-09-08T07:03:00,382 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T07:03:00,382 or your builds will no longer be supported. 2025-09-08T07:03:00,382 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-08T07:03:00,382 ******************************************************************************** 2025-09-08T07:03:00,382 !! 2025-09-08T07:03:00,382 self.initialize_options() 2025-09-08T07:03:00,454 installing to build/bdist.linux-armv7l/wheel 2025-09-08T07:03:00,454 running install 2025-09-08T07:03:00,476 running install_lib 2025-09-08T07:03:00,548 creating build/bdist.linux-armv7l/wheel 2025-09-08T07:03:00,548 creating build/bdist.linux-armv7l/wheel/Mikado 2025-09-08T07:03:00,549 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2025-09-08T07:03:00,549 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2025-09-08T07:03:00,550 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:03:00,550 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:03:00,550 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:03:00,551 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:03:00,551 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:03:00,552 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:03:00,552 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:03:00,552 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T07:03:00,553 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T07:03:00,553 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T07:03:00,554 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T07:03:00,554 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2025-09-08T07:03:00,554 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,557 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,558 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,559 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,559 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.c -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,561 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,561 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,561 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.c -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,564 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,564 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,565 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/assigner.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,565 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,566 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:03:00,566 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2025-09-08T07:03:00,567 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2025-09-08T07:03:00,567 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:03:00,567 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/merge_blast.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:03:00,568 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:03:00,568 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:03:00,569 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:03:00,569 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:03:00,569 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:03:00,570 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:03:00,570 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:03:00,571 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:03:00,571 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:03:00,571 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:03:00,572 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:03:00,572 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:03:00,572 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:03:00,573 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2025-09-08T07:03:00,573 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T07:03:00,574 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T07:03:00,574 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T07:03:00,574 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T07:03:00,575 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2025-09-08T07:03:00,575 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T07:03:00,576 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T07:03:00,576 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T07:03:00,577 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2025-09-08T07:03:00,577 creating build/bdist.linux-armv7l/wheel/Mikado/loci/transcript_methods 2025-09-08T07:03:00,578 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci/transcript_methods 2025-09-08T07:03:00,578 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci/transcript_methods 2025-09-08T07:03:00,579 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci/transcript_methods 2025-09-08T07:03:00,579 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci/transcript_methods 2025-09-08T07:03:00,579 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci/transcript_methods 2025-09-08T07:03:00,580 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,580 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/clique_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,581 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/reference_gene.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,581 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,582 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,582 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,583 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,583 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,583 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,584 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,584 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,585 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/transcript.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:03:00,586 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2025-09-08T07:03:00,586 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/tr.snakefile -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:03:00,586 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/mikado.snakefile -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:03:00,587 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/local.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:03:00,587 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:03:00,588 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/hpc.json -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:03:00,588 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/example_config.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:03:00,588 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:03:00,589 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2025-09-08T07:03:00,589 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2025-09-08T07:03:00,590 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T07:03:00,590 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T07:03:00,590 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test.log -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T07:03:00,591 creating build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2025-09-08T07:03:00,591 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,592 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,592 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,593 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,593 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,594 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,594 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,595 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,595 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,596 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,596 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,596 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,597 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,597 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,598 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,598 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,598 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,599 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,599 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,599 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,600 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,600 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,600 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,601 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,601 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,601 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,602 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,602 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_excluded.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,603 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_excluded.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,603 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,603 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,604 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,604 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,604 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,605 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,605 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_abstractlocus.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,605 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_abstractlocus.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,606 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,606 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,606 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,607 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,607 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,607 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,608 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,608 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,609 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,609 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,610 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,610 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,611 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,611 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,612 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:03:00,612 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,636 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,636 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,636 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,637 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,637 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,638 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/plants.yaml~ -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,638 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,638 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,639 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,645 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,650 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,651 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,651 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,652 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,652 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,653 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,682 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/utilities_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,682 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_abstractlocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,682 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,683 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,683 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,684 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,684 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_single.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,684 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_positive.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,685 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/assigner_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,686 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_excluded.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,686 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_negative.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,686 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_json.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,687 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/intervaltree_tests.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,687 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,687 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,688 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,688 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,688 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,689 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,689 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,690 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,690 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_serialisation.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,691 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/locus_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,692 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/orf_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,692 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/parser_testing.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,692 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:03:00,693 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2025-09-08T07:03:00,693 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:03:00,697 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:03:00,699 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:03:00,699 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:03:00,699 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:03:00,701 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:03:00,701 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.c -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:03:00,705 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:03:00,705 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:03:00,706 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:03:00,706 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2025-09-08T07:03:00,707 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2025-09-08T07:03:00,707 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/worm.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T07:03:00,707 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/spombe.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T07:03:00,708 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/plants.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T07:03:00,708 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/insects.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T07:03:00,709 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/human.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T07:03:00,709 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:03:00,709 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/requirements_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:03:00,710 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/daijin_schema.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:03:00,710 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/configuration_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:03:00,711 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:03:00,711 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:03:00,711 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:03:00,712 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2025-09-08T07:03:00,712 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:03:00,713 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:03:00,713 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:03:00,714 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:03:00,714 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/blast_xml.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:03:00,715 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:03:00,715 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:03:00,715 copying build/lib.linux-armv7l-cpython-313/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/./Mikado 2025-09-08T07:03:00,716 copying build/lib.linux-armv7l-cpython-313/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado 2025-09-08T07:03:00,716 running install_egg_info 2025-09-08T07:03:00,795 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/./Mikado-1.0.0b9-py3.13.egg-info 2025-09-08T07:03:00,797 running install_scripts 2025-09-08T07:03:00,798 creating build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,798 copying build/scripts-3.13/create_model.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,799 copying build/scripts-3.13/analyse_metrics.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,799 copying build/scripts-3.13/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,799 copying build/scripts-3.13/split_fasta.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,800 copying build/scripts-3.13/class_run.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,800 copying build/scripts-3.13/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,801 copying build/scripts-3.13/grep.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,801 copying build/scripts-3.13/align_collect.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,801 copying build/scripts-3.13/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,802 copying build/scripts-3.13/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,802 copying build/scripts-3.13/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,802 copying build/scripts-3.13/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,803 copying build/scripts-3.13/self_training.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,803 copying build/scripts-3.13/bam2gtf.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,804 copying build/scripts-3.13/asm_collect.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,804 copying build/scripts-3.13/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts 2025-09-08T07:03:00,805 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/create_model.py to 755 2025-09-08T07:03:00,805 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/analyse_metrics.py to 755 2025-09-08T07:03:00,805 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/remove_from_embl.py to 755 2025-09-08T07:03:00,805 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/split_fasta.py to 755 2025-09-08T07:03:00,805 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/class_run.py to 755 2025-09-08T07:03:00,805 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/add_transcript_feature_to_gtf.py to 755 2025-09-08T07:03:00,805 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/grep.py to 755 2025-09-08T07:03:00,806 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/align_collect.py to 755 2025-09-08T07:03:00,806 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/sanitize_blast_db.py to 755 2025-09-08T07:03:00,806 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/gffjunc_to_bed12.py to 755 2025-09-08T07:03:00,806 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/getFastaFromIds.py to 755 2025-09-08T07:03:00,806 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/merge_junction_bed12.py to 755 2025-09-08T07:03:00,806 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/self_training.py to 755 2025-09-08T07:03:00,806 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/bam2gtf.py to 755 2025-09-08T07:03:00,806 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/asm_collect.py to 755 2025-09-08T07:03:00,806 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.data/scripts/trim_long_introns.py to 755 2025-09-08T07:03:00,857 creating build/bdist.linux-armv7l/wheel/mikado-1.0.0b9.dist-info/WHEEL 2025-09-08T07:03:00,858 creating '/tmp/pip-wheel-dkukt8wk/mikado-1.0.0b9-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-08T07:03:00,860 adding 'Mikado/__init__.py' 2025-09-08T07:03:00,861 adding 'Mikado/exceptions.py' 2025-09-08T07:03:00,861 adding 'Mikado/configuration/__init__.py' 2025-09-08T07:03:00,864 adding 'Mikado/configuration/configuration_blueprint.json' 2025-09-08T07:03:00,867 adding 'Mikado/configuration/configurator.py' 2025-09-08T07:03:00,868 adding 'Mikado/configuration/daijin_configurator.py' 2025-09-08T07:03:00,869 adding 'Mikado/configuration/daijin_schema.json' 2025-09-08T07:03:00,870 adding 'Mikado/configuration/requirements_blueprint.json' 2025-09-08T07:03:00,870 adding 'Mikado/configuration/scoring_blueprint.json' 2025-09-08T07:03:00,871 adding 'Mikado/configuration/scoring_files/human.yaml' 2025-09-08T07:03:00,872 adding 'Mikado/configuration/scoring_files/insects.yaml' 2025-09-08T07:03:00,872 adding 'Mikado/configuration/scoring_files/plants.yaml' 2025-09-08T07:03:00,873 adding 'Mikado/configuration/scoring_files/spombe.yaml' 2025-09-08T07:03:00,874 adding 'Mikado/configuration/scoring_files/worm.yaml' 2025-09-08T07:03:00,876 adding 'Mikado/daijin/__init__.py' 2025-09-08T07:03:00,877 adding 'Mikado/daijin/example_config.yaml' 2025-09-08T07:03:00,877 adding 'Mikado/daijin/hpc.json' 2025-09-08T07:03:00,878 adding 'Mikado/daijin/hpc.yaml' 2025-09-08T07:03:00,879 adding 'Mikado/daijin/local.yaml' 2025-09-08T07:03:00,880 adding 'Mikado/daijin/mikado.snakefile' 2025-09-08T07:03:00,883 adding 'Mikado/daijin/tr.snakefile' 2025-09-08T07:03:00,884 adding 'Mikado/loci/__init__.py' 2025-09-08T07:03:00,888 adding 'Mikado/loci/abstractlocus.py' 2025-09-08T07:03:00,889 adding 'Mikado/loci/clique_methods.py' 2025-09-08T07:03:00,890 adding 'Mikado/loci/excluded.py' 2025-09-08T07:03:00,894 adding 'Mikado/loci/locus.py' 2025-09-08T07:03:00,895 adding 'Mikado/loci/monosublocus.py' 2025-09-08T07:03:00,896 adding 'Mikado/loci/monosublocusholder.py' 2025-09-08T07:03:00,898 adding 'Mikado/loci/reference_gene.py' 2025-09-08T07:03:00,900 adding 'Mikado/loci/sublocus.py' 2025-09-08T07:03:00,905 adding 'Mikado/loci/superlocus.py' 2025-09-08T07:03:00,916 adding 'Mikado/loci/transcript.py' 2025-09-08T07:03:00,918 adding 'Mikado/loci/transcriptchecker.py' 2025-09-08T07:03:00,919 adding 'Mikado/loci/transcript_methods/__init__.py' 2025-09-08T07:03:00,921 adding 'Mikado/loci/transcript_methods/finalizing.py' 2025-09-08T07:03:00,923 adding 'Mikado/loci/transcript_methods/printing.py' 2025-09-08T07:03:00,926 adding 'Mikado/loci/transcript_methods/retrieval.py' 2025-09-08T07:03:00,929 adding 'Mikado/loci/transcript_methods/splitting.py' 2025-09-08T07:03:00,931 adding 'Mikado/parsers/GFF.py' 2025-09-08T07:03:00,932 adding 'Mikado/parsers/GTF.py' 2025-09-08T07:03:00,933 adding 'Mikado/parsers/__init__.py' 2025-09-08T07:03:00,935 adding 'Mikado/parsers/bed12.py' 2025-09-08T07:03:00,937 adding 'Mikado/parsers/blast_utils.py' 2025-09-08T07:03:00,941 adding 'Mikado/parsers/blast_xml.py' 2025-09-08T07:03:00,943 adding 'Mikado/parsers/gfannotation.py' 2025-09-08T07:03:00,943 adding 'Mikado/picking/__init__.py' 2025-09-08T07:03:00,946 adding 'Mikado/picking/loci_processer.py' 2025-09-08T07:03:00,951 adding 'Mikado/picking/picker.py' 2025-09-08T07:03:00,952 adding 'Mikado/preparation/__init__.py' 2025-09-08T07:03:00,954 adding 'Mikado/preparation/annotation_parser.py' 2025-09-08T07:03:00,955 adding 'Mikado/preparation/checking.py' 2025-09-08T07:03:00,956 adding 'Mikado/preparation/prepare.py' 2025-09-08T07:03:00,957 adding 'Mikado/scales/__init__.py' 2025-09-08T07:03:00,961 adding 'Mikado/scales/accountant.py' 2025-09-08T07:03:00,965 adding 'Mikado/scales/assigner.py' 2025-09-08T07:03:00,967 adding 'Mikado/scales/compare.py' 2025-09-08T07:03:01,015 adding 'Mikado/scales/contrast.c' 2025-09-08T07:03:01,130 adding 'Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T07:03:01,135 adding 'Mikado/scales/contrast.pxd' 2025-09-08T07:03:01,137 adding 'Mikado/scales/contrast.pyx' 2025-09-08T07:03:01,168 adding 'Mikado/scales/f1.c' 2025-09-08T07:03:01,208 adding 'Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T07:03:01,210 adding 'Mikado/scales/f1.pxd' 2025-09-08T07:03:01,211 adding 'Mikado/scales/f1.pyx' 2025-09-08T07:03:01,211 adding 'Mikado/scales/resultstorer.py' 2025-09-08T07:03:01,212 adding 'Mikado/serializers/__init__.py' 2025-09-08T07:03:01,213 adding 'Mikado/serializers/external.py' 2025-09-08T07:03:01,214 adding 'Mikado/serializers/junction.py' 2025-09-08T07:03:01,216 adding 'Mikado/serializers/orf.py' 2025-09-08T07:03:01,216 adding 'Mikado/serializers/blast_serializer/__init__.py' 2025-09-08T07:03:01,218 adding 'Mikado/serializers/blast_serializer/hit.py' 2025-09-08T07:03:01,219 adding 'Mikado/serializers/blast_serializer/hsp.py' 2025-09-08T07:03:01,219 adding 'Mikado/serializers/blast_serializer/query.py' 2025-09-08T07:03:01,220 adding 'Mikado/serializers/blast_serializer/target.py' 2025-09-08T07:03:01,221 adding 'Mikado/serializers/blast_serializer/utils.py' 2025-09-08T07:03:01,225 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2025-09-08T07:03:01,226 adding 'Mikado/subprograms/__init__.py' 2025-09-08T07:03:01,226 adding 'Mikado/subprograms/__main__.py' 2025-09-08T07:03:01,227 adding 'Mikado/subprograms/compare.py' 2025-09-08T07:03:01,229 adding 'Mikado/subprograms/configure.py' 2025-09-08T07:03:01,230 adding 'Mikado/subprograms/pick.py' 2025-09-08T07:03:01,232 adding 'Mikado/subprograms/prepare.py' 2025-09-08T07:03:01,234 adding 'Mikado/subprograms/serialise.py' 2025-09-08T07:03:01,234 adding 'Mikado/subprograms/util/__init__.py' 2025-09-08T07:03:01,235 adding 'Mikado/subprograms/util/awk_gtf.py' 2025-09-08T07:03:01,236 adding 'Mikado/subprograms/util/convert.py' 2025-09-08T07:03:01,237 adding 'Mikado/subprograms/util/grep.py' 2025-09-08T07:03:01,238 adding 'Mikado/subprograms/util/merge_blast.py' 2025-09-08T07:03:01,238 adding 'Mikado/subprograms/util/metrics.py' 2025-09-08T07:03:01,241 adding 'Mikado/subprograms/util/stats.py' 2025-09-08T07:03:01,243 adding 'Mikado/subprograms/util/trim.py' 2025-09-08T07:03:01,243 adding 'Mikado/tests/__init__.py' 2025-09-08T07:03:01,246 adding 'Mikado/tests/assigner_tester.py' 2025-09-08T07:03:02,111 adding 'Mikado/tests/chr5.fas.gz' 2025-09-08T07:03:02,162 adding 'Mikado/tests/configuration.yaml' 2025-09-08T07:03:02,164 adding 'Mikado/tests/cufflinks.gtf' 2025-09-08T07:03:02,164 adding 'Mikado/tests/genome.fai' 2025-09-08T07:03:02,165 adding 'Mikado/tests/intervaltree_tests.py' 2025-09-08T07:03:02,170 adding 'Mikado/tests/junctions.bed' 2025-09-08T07:03:02,173 adding 'Mikado/tests/locus_tester.py' 2025-09-08T07:03:02,197 adding 'Mikado/tests/mikado.blast.asn.gz' 2025-09-08T07:03:02,250 adding 'Mikado/tests/mikado.blast.xml' 2025-09-08T07:03:02,535 adding 'Mikado/tests/mikado.db' 2025-09-08T07:03:02,549 adding 'Mikado/tests/mikado_prepared.gtf' 2025-09-08T07:03:02,554 adding 'Mikado/tests/orf_tester.py' 2025-09-08T07:03:02,555 adding 'Mikado/tests/parser_testing.py' 2025-09-08T07:03:02,556 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2025-09-08T07:03:02,557 adding 'Mikado/tests/plants.yaml~' 2025-09-08T07:03:02,557 adding 'Mikado/tests/test_abstractlocus.py' 2025-09-08T07:03:02,558 adding 'Mikado/tests/test_blast_related.py' 2025-09-08T07:03:02,558 adding 'Mikado/tests/test_clique_methods.py' 2025-09-08T07:03:02,559 adding 'Mikado/tests/test_db_utils.py' 2025-09-08T07:03:02,560 adding 'Mikado/tests/test_excluded.py' 2025-09-08T07:03:02,561 adding 'Mikado/tests/test_external_scores.py' 2025-09-08T07:03:02,561 adding 'Mikado/tests/test_gene.py' 2025-09-08T07:03:02,562 adding 'Mikado/tests/test_invalid_orfs.py' 2025-09-08T07:03:02,563 adding 'Mikado/tests/test_json.py' 2025-09-08T07:03:02,564 adding 'Mikado/tests/test_metrics.py' 2025-09-08T07:03:02,564 adding 'Mikado/tests/test_modifications.py' 2025-09-08T07:03:02,565 adding 'Mikado/tests/test_serialisation.py' 2025-09-08T07:03:02,566 adding 'Mikado/tests/test_splitting.py' 2025-09-08T07:03:02,569 adding 'Mikado/tests/test_system_calls.py' 2025-09-08T07:03:02,570 adding 'Mikado/tests/test_transcript_checker.py' 2025-09-08T07:03:02,571 adding 'Mikado/tests/test_transcript_methods.py' 2025-09-08T07:03:02,573 adding 'Mikado/tests/transcript_tester_negative.py' 2025-09-08T07:03:02,577 adding 'Mikado/tests/transcript_tester_positive.py' 2025-09-08T07:03:02,579 adding 'Mikado/tests/transcript_tester_single.py' 2025-09-08T07:03:02,581 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2025-09-08T07:03:02,582 adding 'Mikado/tests/trinity.gff3' 2025-09-08T07:03:02,584 adding 'Mikado/tests/trinity.gtf' 2025-09-08T07:03:02,586 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2025-09-08T07:03:02,586 adding 'Mikado/tests/trinity_stats.txt' 2025-09-08T07:03:03,297 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2025-09-08T07:03:03,339 adding 'Mikado/tests/utilities_tester.py' 2025-09-08T07:03:03,340 adding 'Mikado/tests/__pycache__/__init__.cpython-34.pyc' 2025-09-08T07:03:03,340 adding 'Mikado/tests/__pycache__/__init__.cpython-35.pyc' 2025-09-08T07:03:03,344 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc' 2025-09-08T07:03:03,348 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc' 2025-09-08T07:03:03,349 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc' 2025-09-08T07:03:03,351 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc' 2025-09-08T07:03:03,355 adding 'Mikado/tests/__pycache__/locus_tester.cpython-34.pyc' 2025-09-08T07:03:03,360 adding 'Mikado/tests/__pycache__/locus_tester.cpython-35.pyc' 2025-09-08T07:03:03,366 adding 'Mikado/tests/__pycache__/orf_tester.cpython-34.pyc' 2025-09-08T07:03:03,371 adding 'Mikado/tests/__pycache__/orf_tester.cpython-35.pyc' 2025-09-08T07:03:03,372 adding 'Mikado/tests/__pycache__/parser_testing.cpython-34.pyc' 2025-09-08T07:03:03,373 adding 'Mikado/tests/__pycache__/parser_testing.cpython-35.pyc' 2025-09-08T07:03:03,374 adding 'Mikado/tests/__pycache__/phases_checker.cpython-34.pyc' 2025-09-08T07:03:03,375 adding 'Mikado/tests/__pycache__/phases_checker.cpython-35.pyc' 2025-09-08T07:03:03,377 adding 'Mikado/tests/__pycache__/system_checks.cpython-35.pyc' 2025-09-08T07:03:03,378 adding 'Mikado/tests/__pycache__/test_abstractlocus.cpython-34.pyc' 2025-09-08T07:03:03,378 adding 'Mikado/tests/__pycache__/test_abstractlocus.cpython-35.pyc' 2025-09-08T07:03:03,379 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc' 2025-09-08T07:03:03,380 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc' 2025-09-08T07:03:03,381 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc' 2025-09-08T07:03:03,382 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc' 2025-09-08T07:03:03,383 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc' 2025-09-08T07:03:03,384 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc' 2025-09-08T07:03:03,385 adding 'Mikado/tests/__pycache__/test_excluded.cpython-34.pyc' 2025-09-08T07:03:03,385 adding 'Mikado/tests/__pycache__/test_excluded.cpython-35.pyc' 2025-09-08T07:03:03,386 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc' 2025-09-08T07:03:03,387 adding 'Mikado/tests/__pycache__/test_gene.cpython-34.pyc' 2025-09-08T07:03:03,387 adding 'Mikado/tests/__pycache__/test_gene.cpython-35.pyc' 2025-09-08T07:03:03,388 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc' 2025-09-08T07:03:03,389 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc' 2025-09-08T07:03:03,390 adding 'Mikado/tests/__pycache__/test_json.cpython-35.pyc' 2025-09-08T07:03:03,391 adding 'Mikado/tests/__pycache__/test_metrics.cpython-34.pyc' 2025-09-08T07:03:03,393 adding 'Mikado/tests/__pycache__/test_metrics.cpython-35.pyc' 2025-09-08T07:03:03,393 adding 'Mikado/tests/__pycache__/test_modifications.cpython-34.pyc' 2025-09-08T07:03:03,394 adding 'Mikado/tests/__pycache__/test_modifications.cpython-35.pyc' 2025-09-08T07:03:03,396 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc' 2025-09-08T07:03:03,397 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc' 2025-09-08T07:03:03,398 adding 'Mikado/tests/__pycache__/test_splitting.cpython-34.pyc' 2025-09-08T07:03:03,400 adding 'Mikado/tests/__pycache__/test_splitting.cpython-35.pyc' 2025-09-08T07:03:03,403 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc' 2025-09-08T07:03:03,404 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc' 2025-09-08T07:03:03,406 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc' 2025-09-08T07:03:03,407 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc' 2025-09-08T07:03:03,409 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc' 2025-09-08T07:03:03,412 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc' 2025-09-08T07:03:03,415 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc' 2025-09-08T07:03:03,419 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc' 2025-09-08T07:03:03,424 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc' 2025-09-08T07:03:03,428 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc' 2025-09-08T07:03:03,431 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc' 2025-09-08T07:03:03,432 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc' 2025-09-08T07:03:03,434 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc' 2025-09-08T07:03:03,434 adding 'Mikado/tests/fusion_test/fusion_test.log' 2025-09-08T07:03:03,435 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2025-09-08T07:03:03,436 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2025-09-08T07:03:03,437 adding 'Mikado/utilities/__init__.py' 2025-09-08T07:03:03,438 adding 'Mikado/utilities/dbutils.py' 2025-09-08T07:03:03,503 adding 'Mikado/utilities/intervaltree.c' 2025-09-08T07:03:03,696 adding 'Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T07:03:03,704 adding 'Mikado/utilities/intervaltree.pyx' 2025-09-08T07:03:03,705 adding 'Mikado/utilities/log_utils.py' 2025-09-08T07:03:03,737 adding 'Mikado/utilities/overlap.c' 2025-09-08T07:03:03,785 adding 'Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T07:03:03,787 adding 'Mikado/utilities/overlap.pxd' 2025-09-08T07:03:03,788 adding 'Mikado/utilities/overlap.pyx' 2025-09-08T07:03:03,789 adding 'mikado-1.0.0b9.data/scripts/add_transcript_feature_to_gtf.py' 2025-09-08T07:03:03,789 adding 'mikado-1.0.0b9.data/scripts/align_collect.py' 2025-09-08T07:03:03,790 adding 'mikado-1.0.0b9.data/scripts/analyse_metrics.py' 2025-09-08T07:03:03,791 adding 'mikado-1.0.0b9.data/scripts/asm_collect.py' 2025-09-08T07:03:03,792 adding 'mikado-1.0.0b9.data/scripts/bam2gtf.py' 2025-09-08T07:03:03,793 adding 'mikado-1.0.0b9.data/scripts/class_run.py' 2025-09-08T07:03:03,794 adding 'mikado-1.0.0b9.data/scripts/create_model.py' 2025-09-08T07:03:03,794 adding 'mikado-1.0.0b9.data/scripts/getFastaFromIds.py' 2025-09-08T07:03:03,795 adding 'mikado-1.0.0b9.data/scripts/gffjunc_to_bed12.py' 2025-09-08T07:03:03,796 adding 'mikado-1.0.0b9.data/scripts/grep.py' 2025-09-08T07:03:03,797 adding 'mikado-1.0.0b9.data/scripts/merge_junction_bed12.py' 2025-09-08T07:03:03,797 adding 'mikado-1.0.0b9.data/scripts/remove_from_embl.py' 2025-09-08T07:03:03,798 adding 'mikado-1.0.0b9.data/scripts/sanitize_blast_db.py' 2025-09-08T07:03:03,799 adding 'mikado-1.0.0b9.data/scripts/self_training.py' 2025-09-08T07:03:03,800 adding 'mikado-1.0.0b9.data/scripts/split_fasta.py' 2025-09-08T07:03:03,801 adding 'mikado-1.0.0b9.data/scripts/trim_long_introns.py' 2025-09-08T07:03:03,802 adding 'mikado-1.0.0b9.dist-info/licenses/AUTHORS' 2025-09-08T07:03:03,803 adding 'mikado-1.0.0b9.dist-info/METADATA' 2025-09-08T07:03:03,803 adding 'mikado-1.0.0b9.dist-info/WHEEL' 2025-09-08T07:03:03,804 adding 'mikado-1.0.0b9.dist-info/entry_points.txt' 2025-09-08T07:03:03,804 adding 'mikado-1.0.0b9.dist-info/top_level.txt' 2025-09-08T07:03:03,808 adding 'mikado-1.0.0b9.dist-info/RECORD' 2025-09-08T07:03:03,810 removing build/bdist.linux-armv7l/wheel 2025-09-08T07:03:03,971 Building wheel for mikado (setup.py): finished with status 'done' 2025-09-08T07:03:04,147 Created wheel for mikado: filename=mikado-1.0.0b9-cp313-cp313-linux_armv7l.whl size=17499512 sha256=feed0441e01e5ed6abdde5aa63f32d8938e0f4396312cde18b80a225e942fe6a 2025-09-08T07:03:04,148 Stored in directory: /tmp/pip-ephem-wheel-cache-uyzvswln/wheels/83/20/53/fb38aec81413da3c4539fad01b14cef418b91d8a54a79f27b5 2025-09-08T07:03:04,161 Successfully built mikado 2025-09-08T07:03:04,197 Removed build tracker: '/tmp/pip-build-tracker-5_cl_yta'