2025-09-08T07:17:25,630 Created temporary directory: /tmp/pip-build-tracker-ovim4th9 2025-09-08T07:17:25,631 Initialized build tracking at /tmp/pip-build-tracker-ovim4th9 2025-09-08T07:17:25,631 Created build tracker: /tmp/pip-build-tracker-ovim4th9 2025-09-08T07:17:25,631 Entered build tracker: /tmp/pip-build-tracker-ovim4th9 2025-09-08T07:17:25,631 Created temporary directory: /tmp/pip-wheel-j4p2hw3i 2025-09-08T07:17:25,634 Created temporary directory: /tmp/pip-ephem-wheel-cache-shrrovi1 2025-09-08T07:17:25,690 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T07:17:25,692 2 location(s) to search for versions of mikado: 2025-09-08T07:17:25,692 * https://pypi.org/simple/mikado/ 2025-09-08T07:17:25,692 * https://www.piwheels.org/simple/mikado/ 2025-09-08T07:17:25,693 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2025-09-08T07:17:25,693 Getting page https://pypi.org/simple/mikado/ 2025-09-08T07:17:25,694 Found index url https://pypi.org/simple/ 2025-09-08T07:17:25,764 Fetched page https://pypi.org/simple/mikado/ as application/vnd.pypi.simple.v1+json 2025-09-08T07:17:25,768 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2025-09-08T07:17:25,768 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2025-09-08T07:17:25,769 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2025-09-08T07:17:25,769 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0 2025-09-08T07:17:25,769 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.1 2025-09-08T07:17:25,769 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2 2025-09-08T07:17:25,770 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.1 2025-09-08T07:17:25,770 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.2 2025-09-08T07:17:25,770 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/mikado/) 2025-09-08T07:17:25,770 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.4 2025-09-08T07:17:25,770 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc1 2025-09-08T07:17:25,770 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc2 2025-09-08T07:17:25,771 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2025-09-08T07:17:25,771 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2025-09-08T07:17:25,772 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2025-09-08T07:17:25,772 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2025-09-08T07:17:25,772 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2025-09-08T07:17:25,772 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2025-09-08T07:17:25,772 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2025-09-08T07:17:25,773 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2025-09-08T07:17:25,773 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2025-09-08T07:17:25,773 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2025-09-08T07:17:25,774 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2025-09-08T07:17:25,774 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2025-09-08T07:17:25,774 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2025-09-08T07:17:25,774 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2025-09-08T07:17:25,775 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2025-09-08T07:17:25,775 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2025-09-08T07:17:25,775 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2025-09-08T07:17:25,776 Getting page https://www.piwheels.org/simple/mikado/ 2025-09-08T07:17:25,777 Found index url https://www.piwheels.org/simple/ 2025-09-08T07:17:25,871 Fetched page https://www.piwheels.org/simple/mikado/ as text/html 2025-09-08T07:17:25,897 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,897 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,897 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,898 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,898 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,898 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,898 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,898 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,898 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,899 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,899 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,899 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,899 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,899 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,899 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,899 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,900 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,900 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,900 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,900 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,900 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,900 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,901 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,901 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,901 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv6l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,901 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv7l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,901 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv6l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,901 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv7l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T07:17:25,901 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.3-cp37-cp37m-linux_armv6l.whl#sha256=0ca20e373c9e6bb78e52fcc63bd76ce297019dc0398a342552de37e05393ec0d (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T07:17:25,902 Skipping link: No binaries permitted for mikado: 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https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp37-cp37m-linux_armv7l.whl#sha256=b280f5816066e0f347dc78973f3dba49da227f44894dd596e0d1d8b968232fe7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T07:17:25,904 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp39-cp39-linux_armv6l.whl#sha256=a037ee8af5e543296153555c58e9d0ccd04adf06ebcd075b18ce38e5d6b8d676 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T07:17:25,904 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp39-cp39-linux_armv7l.whl#sha256=a037ee8af5e543296153555c58e9d0ccd04adf06ebcd075b18ce38e5d6b8d676 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T07:17:25,904 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,908 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc2-cp39-cp39-linux_armv7l.whl#sha256=27d920e52482eb28c4c4915cd13022c57b6a2e9b24ab9cbb9c6fb84a57c86006 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,908 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp35-cp35m-linux_armv6l.whl#sha256=f0c146400dbcde6c6b2b4691d3519ee99863e2f9a5a53473bb658567431c4e58 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,908 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp35-cp35m-linux_armv7l.whl#sha256=f0c146400dbcde6c6b2b4691d3519ee99863e2f9a5a53473bb658567431c4e58 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,908 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,909 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,909 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,909 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv7l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,909 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,909 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv7l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,910 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv6l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,910 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp311-cp311-linux_armv6l.whl#sha256=f046bdaea4a2cf6889ea15964c360551b58427311379d68e8d438b673e4f4d97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,910 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp311-cp311-linux_armv7l.whl#sha256=f046bdaea4a2cf6889ea15964c360551b58427311379d68e8d438b673e4f4d97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,910 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,910 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv7l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,910 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,910 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,911 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp311-cp311-linux_armv6l.whl#sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,911 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp311-cp311-linux_armv7l.whl#sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,911 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,911 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,911 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,911 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,911 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,912 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,912 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv6l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,912 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv7l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,912 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv7l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,912 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,912 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv6l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,912 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv7l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,913 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,913 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv7l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,913 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv6l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,913 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv7l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,913 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp39-cp39-linux_armv6l.whl#sha256=dfcb87da8afbf3806c9ba6ac00eb3fcc32717eecd66839e3981624e0c83102b9 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,913 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp39-cp39-linux_armv7l.whl#sha256=dfcb87da8afbf3806c9ba6ac00eb3fcc32717eecd66839e3981624e0c83102b9 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,914 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv6l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,914 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv7l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,914 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv6l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,914 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv7l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,914 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv6l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,914 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv7l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,914 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv7l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,915 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv6l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,915 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv6l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,915 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv7l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,915 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,915 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,915 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv6l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,916 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,916 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,916 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,916 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv6l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,916 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv7l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,916 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b9-cp313-cp313-linux_armv6l.whl#sha256=feed0441e01e5ed6abdde5aa63f32d8938e0f4396312cde18b80a225e942fe6a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,916 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b9-cp313-cp313-linux_armv7l.whl#sha256=feed0441e01e5ed6abdde5aa63f32d8938e0f4396312cde18b80a225e942fe6a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,917 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,917 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,917 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,917 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,917 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv6l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,917 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv7l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,918 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b5.post1-cp313-cp313-linux_armv6l.whl#sha256=a484381081c56e7106e45ed0d641845f6c7386588a9564360e66d4259c2a30c2 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,918 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b5.post1-cp313-cp313-linux_armv7l.whl#sha256=a484381081c56e7106e45ed0d641845f6c7386588a9564360e66d4259c2a30c2 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T07:17:25,918 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2025-09-08T07:17:25,918 Skipping link: not a file: https://pypi.org/simple/mikado/ 2025-09-08T07:17:25,943 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2025-09-08T07:17:25,944 Collecting mikado==1.0.0b10 2025-09-08T07:17:25,945 Created temporary directory: /tmp/pip-unpack-6xanxo08 2025-09-08T07:17:26,084 Downloading Mikado-1.0.0b10.tar.gz (17.2 MB) 2025-09-08T07:17:30,223 Added mikado==1.0.0b10 from https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz to build tracker '/tmp/pip-build-tracker-ovim4th9' 2025-09-08T07:17:30,224 Running setup.py (path:/tmp/pip-wheel-j4p2hw3i/mikado_24417814196846f0b887b8eafdfb7f78/setup.py) egg_info for package mikado 2025-09-08T07:17:30,225 Created temporary directory: /tmp/pip-pip-egg-info-apfd350h 2025-09-08T07:17:30,225 Preparing metadata (setup.py): started 2025-09-08T07:17:30,226 Running command python setup.py egg_info 2025-09-08T07:17:33,445 Compiling Mikado/utilities/overlap.pyx because it changed. 2025-09-08T07:17:33,445 Compiling Mikado/scales/f1.pyx because it changed. 2025-09-08T07:17:33,445 Compiling Mikado/scales/contrast.pyx because it changed. 2025-09-08T07:17:33,445 Compiling Mikado/utilities/intervaltree.pyx because it changed. 2025-09-08T07:17:33,445 [1/4] Cythonizing Mikado/scales/contrast.pyx 2025-09-08T07:17:33,445 [2/4] Cythonizing Mikado/scales/f1.pyx 2025-09-08T07:17:33,445 [3/4] Cythonizing Mikado/utilities/intervaltree.pyx 2025-09-08T07:17:33,446 [4/4] Cythonizing Mikado/utilities/overlap.pyx 2025-09-08T07:17:33,617 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T07:17:33,617 warnings.warn(msg) 2025-09-08T07:17:33,842 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T07:17:33,843 !! 2025-09-08T07:17:33,843 ******************************************************************************** 2025-09-08T07:17:33,843 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T07:17:33,843 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-09-08T07:17:33,843 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T07:17:33,843 ******************************************************************************** 2025-09-08T07:17:33,843 !! 2025-09-08T07:17:33,844 self._finalize_license_expression() 2025-09-08T07:17:33,915 running egg_info 2025-09-08T07:17:33,990 creating /tmp/pip-pip-egg-info-apfd350h/Mikado.egg-info 2025-09-08T07:17:33,990 writing /tmp/pip-pip-egg-info-apfd350h/Mikado.egg-info/PKG-INFO 2025-09-08T07:17:33,993 writing dependency_links to /tmp/pip-pip-egg-info-apfd350h/Mikado.egg-info/dependency_links.txt 2025-09-08T07:17:33,994 writing entry points to /tmp/pip-pip-egg-info-apfd350h/Mikado.egg-info/entry_points.txt 2025-09-08T07:17:33,996 writing requirements to /tmp/pip-pip-egg-info-apfd350h/Mikado.egg-info/requires.txt 2025-09-08T07:17:33,996 writing top-level names to /tmp/pip-pip-egg-info-apfd350h/Mikado.egg-info/top_level.txt 2025-09-08T07:17:33,997 writing manifest file '/tmp/pip-pip-egg-info-apfd350h/Mikado.egg-info/SOURCES.txt' 2025-09-08T07:17:34,380 reading manifest file '/tmp/pip-pip-egg-info-apfd350h/Mikado.egg-info/SOURCES.txt' 2025-09-08T07:17:34,381 reading manifest template 'MANIFEST.in' 2025-09-08T07:17:34,479 warning: no previously-included files matching '*' found under directory 'docs' 2025-09-08T07:17:34,479 adding license file 'AUTHORS' 2025-09-08T07:17:34,498 writing manifest file '/tmp/pip-pip-egg-info-apfd350h/Mikado.egg-info/SOURCES.txt' 2025-09-08T07:17:34,814 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T07:17:34,819 Source in /tmp/pip-wheel-j4p2hw3i/mikado_24417814196846f0b887b8eafdfb7f78 has version 1.0.0b10, which satisfies requirement mikado==1.0.0b10 from https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz 2025-09-08T07:17:34,819 Removed mikado==1.0.0b10 from https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz from build tracker '/tmp/pip-build-tracker-ovim4th9' 2025-09-08T07:17:34,828 Created temporary directory: /tmp/pip-unpack-pynyovct 2025-09-08T07:17:34,828 Created temporary directory: /tmp/pip-unpack-z7uv_zsl 2025-09-08T07:17:34,828 Building wheels for collected packages: mikado 2025-09-08T07:17:34,829 Created temporary directory: /tmp/pip-wheel-17fjez6d 2025-09-08T07:17:34,830 DEPRECATION: Building 'mikado' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'mikado'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T07:17:34,831 Building wheel for mikado (setup.py): started 2025-09-08T07:17:34,832 Destination directory: /tmp/pip-wheel-17fjez6d 2025-09-08T07:17:34,832 Running command python setup.py bdist_wheel 2025-09-08T07:17:36,035 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T07:17:36,036 warnings.warn(msg) 2025-09-08T07:17:36,256 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T07:17:36,256 !! 2025-09-08T07:17:36,257 ******************************************************************************** 2025-09-08T07:17:36,257 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T07:17:36,257 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-09-08T07:17:36,257 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T07:17:36,257 ******************************************************************************** 2025-09-08T07:17:36,257 !! 2025-09-08T07:17:36,257 self._finalize_license_expression() 2025-09-08T07:17:36,258 running bdist_wheel 2025-09-08T07:17:36,630 running build 2025-09-08T07:17:36,630 running build_py 2025-09-08T07:17:36,706 creating build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T07:17:36,707 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T07:17:36,707 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T07:17:36,708 creating build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T07:17:36,708 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T07:17:36,709 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T07:17:36,710 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T07:17:36,710 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T07:17:36,711 creating build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:17:36,711 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:17:36,712 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:17:36,712 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:17:36,713 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:17:36,714 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:17:36,714 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:17:36,715 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T07:17:36,716 creating build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:17:36,716 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:17:36,717 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:17:36,717 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:17:36,718 creating build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:17:36,718 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:17:36,719 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:17:36,719 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:17:36,720 creating build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,721 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,721 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,722 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,722 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,723 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,723 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,724 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,725 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,725 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,726 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,726 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,727 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,727 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,728 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,728 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,729 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,729 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,730 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,731 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,731 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,732 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,732 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,733 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,734 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:36,734 creating build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:17:36,735 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:17:36,736 creating build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:17:36,736 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:17:36,736 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:17:36,737 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:17:36,738 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:17:36,738 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:17:36,739 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:17:36,739 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:17:36,740 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:17:36,741 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T07:17:36,741 creating build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T07:17:36,742 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T07:17:36,742 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T07:17:36,743 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T07:17:36,744 creating build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T07:17:36,744 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T07:17:36,745 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T07:17:36,745 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T07:17:36,746 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T07:17:36,747 creating build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:17:36,747 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:17:36,747 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:17:36,748 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:17:36,748 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:17:36,749 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:17:36,749 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:17:36,750 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T07:17:36,751 creating build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:36,751 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:36,752 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:36,752 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:36,753 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:36,754 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:36,754 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:36,755 creating build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T07:17:36,755 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T07:17:36,756 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T07:17:36,756 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T07:17:36,757 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T07:17:36,758 creating build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T07:17:36,758 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T07:17:36,758 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T07:17:36,759 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T07:17:36,760 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T07:17:36,760 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T07:17:36,761 creating build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:17:36,761 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:17:36,762 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:17:36,762 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:17:36,763 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:17:36,764 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:17:36,764 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:17:36,765 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:17:36,765 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:17:36,766 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T07:17:36,766 creating build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:17:36,767 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:17:36,767 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:17:36,768 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:17:36,768 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:17:36,769 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:17:36,769 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:17:36,770 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T07:17:36,770 running egg_info 2025-09-08T07:17:36,843 writing Mikado.egg-info/PKG-INFO 2025-09-08T07:17:36,846 writing dependency_links to Mikado.egg-info/dependency_links.txt 2025-09-08T07:17:36,847 writing entry points to Mikado.egg-info/entry_points.txt 2025-09-08T07:17:36,849 writing requirements to Mikado.egg-info/requires.txt 2025-09-08T07:17:36,849 writing top-level names to Mikado.egg-info/top_level.txt 2025-09-08T07:17:36,935 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2025-09-08T07:17:36,967 reading manifest template 'MANIFEST.in' 2025-09-08T07:17:37,076 adding license file 'AUTHORS' 2025-09-08T07:17:37,103 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2025-09-08T07:17:37,118 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.configuration.scoring_files' is absent from the `packages` configuration. 2025-09-08T07:17:37,118 !! 2025-09-08T07:17:37,118 ******************************************************************************** 2025-09-08T07:17:37,118 ############################ 2025-09-08T07:17:37,118 # Package would be ignored # 2025-09-08T07:17:37,118 ############################ 2025-09-08T07:17:37,118 Python recognizes 'Mikado.configuration.scoring_files' as an importable package[^1], 2025-09-08T07:17:37,118 but it is absent from setuptools' `packages` configuration. 2025-09-08T07:17:37,119 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T07:17:37,119 package, please make sure that 'Mikado.configuration.scoring_files' is explicitly added 2025-09-08T07:17:37,119 to the `packages` configuration field. 2025-09-08T07:17:37,119 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T07:17:37,119 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T07:17:37,119 instead of `find_packages(...)`/`find:`). 2025-09-08T07:17:37,119 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T07:17:37,119 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T07:17:37,120 If you don't want 'Mikado.configuration.scoring_files' to be distributed and are 2025-09-08T07:17:37,120 already explicitly excluding 'Mikado.configuration.scoring_files' via 2025-09-08T07:17:37,120 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T07:17:37,120 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T07:17:37,120 combination with a more fine grained `package-data` configuration. 2025-09-08T07:17:37,120 You can read more about "package data files" on setuptools documentation page: 2025-09-08T07:17:37,120 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T07:17:37,121 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T07:17:37,121 even if it does not contain any `.py` files. 2025-09-08T07:17:37,121 On the other hand, currently there is no concept of package data 2025-09-08T07:17:37,121 directory, all directories are treated like packages. 2025-09-08T07:17:37,121 ******************************************************************************** 2025-09-08T07:17:37,121 !! 2025-09-08T07:17:37,121 check.warn(importable) 2025-09-08T07:17:37,121 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.tests.__pycache__' is absent from the `packages` configuration. 2025-09-08T07:17:37,121 !! 2025-09-08T07:17:37,122 ******************************************************************************** 2025-09-08T07:17:37,122 ############################ 2025-09-08T07:17:37,122 # Package would be ignored # 2025-09-08T07:17:37,122 ############################ 2025-09-08T07:17:37,122 Python recognizes 'Mikado.tests.__pycache__' as an importable package[^1], 2025-09-08T07:17:37,122 but it is absent from setuptools' `packages` configuration. 2025-09-08T07:17:37,122 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T07:17:37,122 package, please make sure that 'Mikado.tests.__pycache__' is explicitly added 2025-09-08T07:17:37,122 to the `packages` configuration field. 2025-09-08T07:17:37,122 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T07:17:37,123 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T07:17:37,123 instead of `find_packages(...)`/`find:`). 2025-09-08T07:17:37,123 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T07:17:37,123 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T07:17:37,123 If you don't want 'Mikado.tests.__pycache__' to be distributed and are 2025-09-08T07:17:37,123 already explicitly excluding 'Mikado.tests.__pycache__' via 2025-09-08T07:17:37,123 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T07:17:37,123 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T07:17:37,123 combination with a more fine grained `package-data` configuration. 2025-09-08T07:17:37,124 You can read more about "package data files" on setuptools documentation page: 2025-09-08T07:17:37,124 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T07:17:37,124 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T07:17:37,124 even if it does not contain any `.py` files. 2025-09-08T07:17:37,124 On the other hand, currently there is no concept of package data 2025-09-08T07:17:37,124 directory, all directories are treated like packages. 2025-09-08T07:17:37,125 ******************************************************************************** 2025-09-08T07:17:37,125 !! 2025-09-08T07:17:37,125 check.warn(importable) 2025-09-08T07:17:37,125 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.tests.fusion_test' is absent from the `packages` configuration. 2025-09-08T07:17:37,125 !! 2025-09-08T07:17:37,125 ******************************************************************************** 2025-09-08T07:17:37,125 ############################ 2025-09-08T07:17:37,125 # Package would be ignored # 2025-09-08T07:17:37,125 ############################ 2025-09-08T07:17:37,126 Python recognizes 'Mikado.tests.fusion_test' as an importable package[^1], 2025-09-08T07:17:37,126 but it is absent from setuptools' `packages` configuration. 2025-09-08T07:17:37,126 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T07:17:37,126 package, please make sure that 'Mikado.tests.fusion_test' is explicitly added 2025-09-08T07:17:37,126 to the `packages` configuration field. 2025-09-08T07:17:37,126 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T07:17:37,126 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T07:17:37,126 instead of `find_packages(...)`/`find:`). 2025-09-08T07:17:37,126 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T07:17:37,127 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T07:17:37,127 If you don't want 'Mikado.tests.fusion_test' to be distributed and are 2025-09-08T07:17:37,127 already explicitly excluding 'Mikado.tests.fusion_test' via 2025-09-08T07:17:37,127 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T07:17:37,127 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T07:17:37,127 combination with a more fine grained `package-data` configuration. 2025-09-08T07:17:37,127 You can read more about "package data files" on setuptools documentation page: 2025-09-08T07:17:37,128 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T07:17:37,128 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T07:17:37,128 even if it does not contain any `.py` files. 2025-09-08T07:17:37,128 On the other hand, currently there is no concept of package data 2025-09-08T07:17:37,128 directory, all directories are treated like packages. 2025-09-08T07:17:37,128 ******************************************************************************** 2025-09-08T07:17:37,128 !! 2025-09-08T07:17:37,128 check.warn(importable) 2025-09-08T07:17:37,134 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:17:37,135 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:17:37,136 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:17:37,136 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T07:17:37,137 creating build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:17:37,137 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:17:37,138 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:17:37,138 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:17:37,139 copying Mikado/configuration/scoring_files/spombe.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:17:37,139 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T07:17:37,140 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:17:37,144 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:17:37,145 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:17:37,146 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:17:37,147 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:17:37,148 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,177 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,178 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,179 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,179 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,180 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,181 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,186 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,192 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,193 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,194 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,194 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,195 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,196 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,196 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,197 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,197 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,198 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T07:17:37,222 creating build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,222 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,223 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,223 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,224 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,225 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,225 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,226 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,226 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,227 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,228 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,228 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,229 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,230 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,230 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,231 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,232 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,232 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,233 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,233 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,234 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,234 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,235 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,236 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,236 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,237 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,237 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,238 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,238 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,239 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,239 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,240 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,240 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,241 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,241 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,242 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,242 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,243 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,243 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,244 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,244 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,245 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,245 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,246 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,246 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,247 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,248 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,248 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,249 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,249 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,250 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,250 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,251 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,251 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,252 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,252 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,253 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,254 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,254 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,255 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,256 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,256 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,257 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,257 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,258 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,258 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,259 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,260 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,260 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,261 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,262 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,262 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,263 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,264 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,264 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,265 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T07:17:37,265 creating build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T07:17:37,266 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T07:17:37,266 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T07:17:37,267 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T07:17:37,267 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:17:37,268 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:17:37,268 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:17:37,269 copying Mikado/daijin/local.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:17:37,269 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:17:37,270 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T07:17:37,270 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:37,273 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:37,274 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:37,275 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:37,276 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:37,277 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:37,282 running build_ext 2025-09-08T07:17:37,289 building 'Mikado.utilities.overlap' extension 2025-09-08T07:17:37,289 creating build/temp.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T07:17:37,290 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-cpython-313/Mikado/utilities/overlap.o 2025-09-08T07:17:41,308 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/utilities/overlap.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so 2025-09-08T07:17:41,421 building 'Mikado.scales.f1' extension 2025-09-08T07:17:41,422 creating build/temp.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T07:17:41,422 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-cpython-313/Mikado/scales/f1.o 2025-09-08T07:17:44,740 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/scales/f1.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so 2025-09-08T07:17:44,853 building 'Mikado.scales.contrast' extension 2025-09-08T07:17:44,854 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-cpython-313/Mikado/scales/contrast.o 2025-09-08T07:17:57,322 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/scales/contrast.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so 2025-09-08T07:17:57,447 building 'Mikado.utilities.intervaltree' extension 2025-09-08T07:17:57,448 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.o 2025-09-08T07:18:17,121 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so 2025-09-08T07:18:17,264 running build_scripts 2025-09-08T07:18:17,264 creating build/scripts-3.13 2025-09-08T07:18:17,264 copying and adjusting util/trim_long_introns.py -> build/scripts-3.13 2025-09-08T07:18:17,265 copying and adjusting util/asm_collect.py -> build/scripts-3.13 2025-09-08T07:18:17,265 copying and adjusting util/bam2gtf.py -> build/scripts-3.13 2025-09-08T07:18:17,265 copying and adjusting util/self_training.py -> build/scripts-3.13 2025-09-08T07:18:17,265 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.13 2025-09-08T07:18:17,265 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.13 2025-09-08T07:18:17,265 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.13 2025-09-08T07:18:17,265 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.13 2025-09-08T07:18:17,265 copying and adjusting util/align_collect.py -> build/scripts-3.13 2025-09-08T07:18:17,265 copying and adjusting util/grep.py -> build/scripts-3.13 2025-09-08T07:18:17,265 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.13 2025-09-08T07:18:17,266 copying and adjusting util/class_run.py -> build/scripts-3.13 2025-09-08T07:18:17,266 copying and adjusting util/split_fasta.py -> build/scripts-3.13 2025-09-08T07:18:17,266 copying and adjusting util/remove_from_embl.py -> build/scripts-3.13 2025-09-08T07:18:17,266 copying and adjusting util/analyse_metrics.py -> build/scripts-3.13 2025-09-08T07:18:17,267 copying and adjusting util/create_model.py -> build/scripts-3.13 2025-09-08T07:18:17,268 changing mode of build/scripts-3.13/trim_long_introns.py from 644 to 755 2025-09-08T07:18:17,268 changing mode of build/scripts-3.13/asm_collect.py from 644 to 755 2025-09-08T07:18:17,268 changing mode of build/scripts-3.13/bam2gtf.py from 644 to 755 2025-09-08T07:18:17,268 changing mode of build/scripts-3.13/self_training.py from 644 to 755 2025-09-08T07:18:17,268 changing mode of build/scripts-3.13/merge_junction_bed12.py from 644 to 755 2025-09-08T07:18:17,268 changing mode of build/scripts-3.13/getFastaFromIds.py from 644 to 755 2025-09-08T07:18:17,268 changing mode of build/scripts-3.13/gffjunc_to_bed12.py from 644 to 755 2025-09-08T07:18:17,269 changing mode of build/scripts-3.13/sanitize_blast_db.py from 644 to 755 2025-09-08T07:18:17,269 changing mode of build/scripts-3.13/align_collect.py from 644 to 755 2025-09-08T07:18:17,269 changing mode of build/scripts-3.13/grep.py from 644 to 755 2025-09-08T07:18:17,269 changing mode of build/scripts-3.13/add_transcript_feature_to_gtf.py from 644 to 755 2025-09-08T07:18:17,269 changing mode of build/scripts-3.13/class_run.py from 644 to 755 2025-09-08T07:18:17,269 changing mode of build/scripts-3.13/split_fasta.py from 644 to 755 2025-09-08T07:18:17,269 changing mode of build/scripts-3.13/remove_from_embl.py from 644 to 755 2025-09-08T07:18:17,269 changing mode of build/scripts-3.13/analyse_metrics.py from 644 to 755 2025-09-08T07:18:17,270 changing mode of build/scripts-3.13/create_model.py from 644 to 755 2025-09-08T07:18:17,408 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-08T07:18:17,408 !! 2025-09-08T07:18:17,409 ******************************************************************************** 2025-09-08T07:18:17,409 Please avoid running ``setup.py`` directly. 2025-09-08T07:18:17,409 Instead, use pypa/build, pypa/installer or other 2025-09-08T07:18:17,409 standards-based tools. 2025-09-08T07:18:17,409 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T07:18:17,409 or your builds will no longer be supported. 2025-09-08T07:18:17,409 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-08T07:18:17,410 ******************************************************************************** 2025-09-08T07:18:17,410 !! 2025-09-08T07:18:17,410 self.initialize_options() 2025-09-08T07:18:17,485 installing to build/bdist.linux-armv7l/wheel 2025-09-08T07:18:17,485 running install 2025-09-08T07:18:17,508 running install_lib 2025-09-08T07:18:17,580 creating build/bdist.linux-armv7l/wheel 2025-09-08T07:18:17,580 creating build/bdist.linux-armv7l/wheel/Mikado 2025-09-08T07:18:17,581 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2025-09-08T07:18:17,581 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2025-09-08T07:18:17,581 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:18:17,582 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:18:17,582 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:18:17,582 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:18:17,583 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:18:17,583 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:18:17,584 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T07:18:17,584 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T07:18:17,585 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T07:18:17,585 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T07:18:17,585 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T07:18:17,586 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2025-09-08T07:18:17,586 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,589 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,590 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,590 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,591 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.c -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,592 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,593 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,593 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.c -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,596 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,596 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,597 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/assigner.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,597 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,598 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/class_codes.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,598 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T07:18:17,599 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2025-09-08T07:18:17,599 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2025-09-08T07:18:17,599 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:18:17,600 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/merge_blast.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:18:17,600 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:18:17,601 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:18:17,601 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/class_codes.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:18:17,601 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:18:17,602 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:18:17,602 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:18:17,603 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T07:18:17,603 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:18:17,603 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:18:17,604 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:18:17,604 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:18:17,605 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:18:17,605 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:18:17,605 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T07:18:17,606 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2025-09-08T07:18:17,606 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T07:18:17,607 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T07:18:17,607 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T07:18:17,607 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T07:18:17,608 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2025-09-08T07:18:17,608 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T07:18:17,609 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T07:18:17,609 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T07:18:17,610 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2025-09-08T07:18:17,610 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:18:17,611 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/reference_gene.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:18:17,611 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:18:17,612 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:18:17,612 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:18:17,613 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:18:17,613 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:18:17,613 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:18:17,614 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T07:18:17,614 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2025-09-08T07:18:17,615 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/tr.snakefile -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:18:17,615 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/mikado.snakefile -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:18:17,616 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/local.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:18:17,616 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:18:17,616 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/hpc.json -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:18:17,617 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/example_config.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:18:17,617 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T07:18:17,618 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2025-09-08T07:18:17,618 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2025-09-08T07:18:17,618 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T07:18:17,619 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T07:18:17,619 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test.log -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T07:18:17,620 creating build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2025-09-08T07:18:17,620 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,621 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,621 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,621 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,622 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,622 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,623 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,623 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,624 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,624 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,625 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,625 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,626 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,626 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,627 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,627 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,627 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,628 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,628 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,629 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,629 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,630 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,630 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,630 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,631 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,631 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,631 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,632 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,632 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,633 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,633 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,633 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,634 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,634 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,634 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,635 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,635 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,636 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,636 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,636 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,637 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,637 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,637 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,638 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,638 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,638 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,639 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,639 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,639 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,640 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,640 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,640 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,641 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,641 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,642 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,642 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,642 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,643 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,643 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,643 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,644 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,644 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,645 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,645 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,646 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,646 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,647 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,647 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,648 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,648 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,649 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,649 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,650 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,650 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,650 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T07:18:17,651 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,674 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,675 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,675 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,675 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,676 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,676 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/scoring_only_cds.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,677 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/plants.yaml~ -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,677 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,677 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,678 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,685 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,689 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,691 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,691 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,692 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,692 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,692 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,721 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/utilities_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,722 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,722 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,723 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,723 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,723 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_single.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,724 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_positive.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,724 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/assigner_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,725 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_negative.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,725 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_json.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,726 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/intervaltree_tests.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,726 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,727 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,727 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,727 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,728 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,728 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,729 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,729 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,729 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_serialisation.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,730 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/locus_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,730 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/orf_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,731 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/parser_testing.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,731 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T07:18:17,732 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2025-09-08T07:18:17,732 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:18:17,736 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:18:17,738 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:18:17,738 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:18:17,738 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:18:17,740 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:18:17,741 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.c -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:18:17,745 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:18:17,745 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:18:17,745 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T07:18:17,746 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2025-09-08T07:18:17,746 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2025-09-08T07:18:17,747 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/worm.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T07:18:17,747 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/spombe.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T07:18:17,747 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/plants.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T07:18:17,748 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/insects.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T07:18:17,748 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/human.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T07:18:17,748 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:18:17,749 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/requirements_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:18:17,749 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/daijin_schema.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:18:17,750 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/configuration_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:18:17,750 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:18:17,750 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:18:17,751 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T07:18:17,751 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2025-09-08T07:18:17,752 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:18:17,752 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:18:17,753 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:18:17,753 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:18:17,753 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/blast_xml.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:18:17,754 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:18:17,754 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T07:18:17,755 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts 2025-09-08T07:18:17,755 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2025-09-08T07:18:17,756 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T07:18:17,756 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T07:18:17,757 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T07:18:17,757 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T07:18:17,757 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T07:18:17,758 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/clique_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T07:18:17,758 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T07:18:17,759 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T07:18:17,759 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T07:18:17,760 copying build/lib.linux-armv7l-cpython-313/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/./Mikado 2025-09-08T07:18:17,760 copying build/lib.linux-armv7l-cpython-313/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado 2025-09-08T07:18:17,761 running install_egg_info 2025-09-08T07:18:17,837 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/./Mikado-1.0.0b10-py3.13.egg-info 2025-09-08T07:18:17,840 running install_scripts 2025-09-08T07:18:17,840 creating build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,841 copying build/scripts-3.13/create_model.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,841 copying build/scripts-3.13/analyse_metrics.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,841 copying build/scripts-3.13/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,842 copying build/scripts-3.13/split_fasta.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,842 copying build/scripts-3.13/class_run.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,842 copying build/scripts-3.13/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,843 copying build/scripts-3.13/grep.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,843 copying build/scripts-3.13/align_collect.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,844 copying build/scripts-3.13/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,844 copying build/scripts-3.13/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,844 copying build/scripts-3.13/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,845 copying build/scripts-3.13/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,845 copying build/scripts-3.13/self_training.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,845 copying build/scripts-3.13/bam2gtf.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,846 copying build/scripts-3.13/asm_collect.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,846 copying build/scripts-3.13/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts 2025-09-08T07:18:17,847 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/create_model.py to 755 2025-09-08T07:18:17,847 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/analyse_metrics.py to 755 2025-09-08T07:18:17,847 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/remove_from_embl.py to 755 2025-09-08T07:18:17,847 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/split_fasta.py to 755 2025-09-08T07:18:17,847 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/class_run.py to 755 2025-09-08T07:18:17,847 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/add_transcript_feature_to_gtf.py to 755 2025-09-08T07:18:17,847 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/grep.py to 755 2025-09-08T07:18:17,847 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/align_collect.py to 755 2025-09-08T07:18:17,847 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/sanitize_blast_db.py to 755 2025-09-08T07:18:17,847 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/gffjunc_to_bed12.py to 755 2025-09-08T07:18:17,848 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/getFastaFromIds.py to 755 2025-09-08T07:18:17,848 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/merge_junction_bed12.py to 755 2025-09-08T07:18:17,848 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/self_training.py to 755 2025-09-08T07:18:17,848 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/bam2gtf.py to 755 2025-09-08T07:18:17,848 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/asm_collect.py to 755 2025-09-08T07:18:17,848 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.data/scripts/trim_long_introns.py to 755 2025-09-08T07:18:17,900 creating build/bdist.linux-armv7l/wheel/mikado-1.0.0b10.dist-info/WHEEL 2025-09-08T07:18:17,901 creating '/tmp/pip-wheel-17fjez6d/mikado-1.0.0b10-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-08T07:18:17,902 adding 'Mikado/__init__.py' 2025-09-08T07:18:17,903 adding 'Mikado/exceptions.py' 2025-09-08T07:18:17,904 adding 'Mikado/configuration/__init__.py' 2025-09-08T07:18:17,907 adding 'Mikado/configuration/configuration_blueprint.json' 2025-09-08T07:18:17,910 adding 'Mikado/configuration/configurator.py' 2025-09-08T07:18:17,911 adding 'Mikado/configuration/daijin_configurator.py' 2025-09-08T07:18:17,912 adding 'Mikado/configuration/daijin_schema.json' 2025-09-08T07:18:17,913 adding 'Mikado/configuration/requirements_blueprint.json' 2025-09-08T07:18:17,913 adding 'Mikado/configuration/scoring_blueprint.json' 2025-09-08T07:18:17,914 adding 'Mikado/configuration/scoring_files/human.yaml' 2025-09-08T07:18:17,915 adding 'Mikado/configuration/scoring_files/insects.yaml' 2025-09-08T07:18:17,916 adding 'Mikado/configuration/scoring_files/plants.yaml' 2025-09-08T07:18:17,916 adding 'Mikado/configuration/scoring_files/spombe.yaml' 2025-09-08T07:18:17,917 adding 'Mikado/configuration/scoring_files/worm.yaml' 2025-09-08T07:18:17,919 adding 'Mikado/daijin/__init__.py' 2025-09-08T07:18:17,920 adding 'Mikado/daijin/example_config.yaml' 2025-09-08T07:18:17,921 adding 'Mikado/daijin/hpc.json' 2025-09-08T07:18:17,921 adding 'Mikado/daijin/hpc.yaml' 2025-09-08T07:18:17,922 adding 'Mikado/daijin/local.yaml' 2025-09-08T07:18:17,923 adding 'Mikado/daijin/mikado.snakefile' 2025-09-08T07:18:17,926 adding 'Mikado/daijin/tr.snakefile' 2025-09-08T07:18:17,927 adding 'Mikado/loci/__init__.py' 2025-09-08T07:18:17,932 adding 'Mikado/loci/abstractlocus.py' 2025-09-08T07:18:17,934 adding 'Mikado/loci/excluded.py' 2025-09-08T07:18:17,937 adding 'Mikado/loci/locus.py' 2025-09-08T07:18:17,938 adding 'Mikado/loci/monosublocus.py' 2025-09-08T07:18:17,940 adding 'Mikado/loci/monosublocusholder.py' 2025-09-08T07:18:17,942 adding 'Mikado/loci/reference_gene.py' 2025-09-08T07:18:17,943 adding 'Mikado/loci/sublocus.py' 2025-09-08T07:18:17,948 adding 'Mikado/loci/superlocus.py' 2025-09-08T07:18:17,950 adding 'Mikado/parsers/GFF.py' 2025-09-08T07:18:17,951 adding 'Mikado/parsers/GTF.py' 2025-09-08T07:18:17,952 adding 'Mikado/parsers/__init__.py' 2025-09-08T07:18:17,955 adding 'Mikado/parsers/bed12.py' 2025-09-08T07:18:17,957 adding 'Mikado/parsers/blast_utils.py' 2025-09-08T07:18:17,960 adding 'Mikado/parsers/blast_xml.py' 2025-09-08T07:18:17,962 adding 'Mikado/parsers/gfannotation.py' 2025-09-08T07:18:17,962 adding 'Mikado/picking/__init__.py' 2025-09-08T07:18:17,966 adding 'Mikado/picking/loci_processer.py' 2025-09-08T07:18:17,970 adding 'Mikado/picking/picker.py' 2025-09-08T07:18:17,971 adding 'Mikado/preparation/__init__.py' 2025-09-08T07:18:17,973 adding 'Mikado/preparation/annotation_parser.py' 2025-09-08T07:18:17,974 adding 'Mikado/preparation/checking.py' 2025-09-08T07:18:17,976 adding 'Mikado/preparation/prepare.py' 2025-09-08T07:18:17,977 adding 'Mikado/scales/__init__.py' 2025-09-08T07:18:17,980 adding 'Mikado/scales/accountant.py' 2025-09-08T07:18:17,984 adding 'Mikado/scales/assigner.py' 2025-09-08T07:18:17,986 adding 'Mikado/scales/class_codes.py' 2025-09-08T07:18:17,988 adding 'Mikado/scales/compare.py' 2025-09-08T07:18:18,037 adding 'Mikado/scales/contrast.c' 2025-09-08T07:18:18,156 adding 'Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T07:18:18,161 adding 'Mikado/scales/contrast.pxd' 2025-09-08T07:18:18,163 adding 'Mikado/scales/contrast.pyx' 2025-09-08T07:18:18,194 adding 'Mikado/scales/f1.c' 2025-09-08T07:18:18,235 adding 'Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T07:18:18,237 adding 'Mikado/scales/f1.pxd' 2025-09-08T07:18:18,237 adding 'Mikado/scales/f1.pyx' 2025-09-08T07:18:18,238 adding 'Mikado/scales/resultstorer.py' 2025-09-08T07:18:18,239 adding 'Mikado/serializers/__init__.py' 2025-09-08T07:18:18,240 adding 'Mikado/serializers/external.py' 2025-09-08T07:18:18,241 adding 'Mikado/serializers/junction.py' 2025-09-08T07:18:18,243 adding 'Mikado/serializers/orf.py' 2025-09-08T07:18:18,243 adding 'Mikado/serializers/blast_serializer/__init__.py' 2025-09-08T07:18:18,245 adding 'Mikado/serializers/blast_serializer/hit.py' 2025-09-08T07:18:18,246 adding 'Mikado/serializers/blast_serializer/hsp.py' 2025-09-08T07:18:18,246 adding 'Mikado/serializers/blast_serializer/query.py' 2025-09-08T07:18:18,247 adding 'Mikado/serializers/blast_serializer/target.py' 2025-09-08T07:18:18,248 adding 'Mikado/serializers/blast_serializer/utils.py' 2025-09-08T07:18:18,251 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2025-09-08T07:18:18,252 adding 'Mikado/subprograms/__init__.py' 2025-09-08T07:18:18,253 adding 'Mikado/subprograms/__main__.py' 2025-09-08T07:18:18,254 adding 'Mikado/subprograms/compare.py' 2025-09-08T07:18:18,256 adding 'Mikado/subprograms/configure.py' 2025-09-08T07:18:18,257 adding 'Mikado/subprograms/pick.py' 2025-09-08T07:18:18,258 adding 'Mikado/subprograms/prepare.py' 2025-09-08T07:18:18,260 adding 'Mikado/subprograms/serialise.py' 2025-09-08T07:18:18,261 adding 'Mikado/subprograms/util/__init__.py' 2025-09-08T07:18:18,262 adding 'Mikado/subprograms/util/awk_gtf.py' 2025-09-08T07:18:18,263 adding 'Mikado/subprograms/util/class_codes.py' 2025-09-08T07:18:18,263 adding 'Mikado/subprograms/util/convert.py' 2025-09-08T07:18:18,264 adding 'Mikado/subprograms/util/grep.py' 2025-09-08T07:18:18,265 adding 'Mikado/subprograms/util/merge_blast.py' 2025-09-08T07:18:18,266 adding 'Mikado/subprograms/util/metrics.py' 2025-09-08T07:18:18,269 adding 'Mikado/subprograms/util/stats.py' 2025-09-08T07:18:18,270 adding 'Mikado/subprograms/util/trim.py' 2025-09-08T07:18:18,271 adding 'Mikado/tests/__init__.py' 2025-09-08T07:18:18,273 adding 'Mikado/tests/assigner_tester.py' 2025-09-08T07:18:19,136 adding 'Mikado/tests/chr5.fas.gz' 2025-09-08T07:18:19,188 adding 'Mikado/tests/configuration.yaml' 2025-09-08T07:18:19,189 adding 'Mikado/tests/cufflinks.gtf' 2025-09-08T07:18:19,190 adding 'Mikado/tests/genome.fai' 2025-09-08T07:18:19,191 adding 'Mikado/tests/intervaltree_tests.py' 2025-09-08T07:18:19,196 adding 'Mikado/tests/junctions.bed' 2025-09-08T07:18:19,199 adding 'Mikado/tests/locus_tester.py' 2025-09-08T07:18:19,224 adding 'Mikado/tests/mikado.blast.asn.gz' 2025-09-08T07:18:19,277 adding 'Mikado/tests/mikado.blast.xml' 2025-09-08T07:18:19,563 adding 'Mikado/tests/mikado.db' 2025-09-08T07:18:19,577 adding 'Mikado/tests/mikado_prepared.gtf' 2025-09-08T07:18:19,583 adding 'Mikado/tests/orf_tester.py' 2025-09-08T07:18:19,584 adding 'Mikado/tests/parser_testing.py' 2025-09-08T07:18:19,585 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2025-09-08T07:18:19,585 adding 'Mikado/tests/plants.yaml~' 2025-09-08T07:18:19,586 adding 'Mikado/tests/scoring_only_cds.yaml' 2025-09-08T07:18:19,587 adding 'Mikado/tests/test_blast_related.py' 2025-09-08T07:18:19,587 adding 'Mikado/tests/test_clique_methods.py' 2025-09-08T07:18:19,588 adding 'Mikado/tests/test_db_utils.py' 2025-09-08T07:18:19,589 adding 'Mikado/tests/test_external_scores.py' 2025-09-08T07:18:19,589 adding 'Mikado/tests/test_gene.py' 2025-09-08T07:18:19,590 adding 'Mikado/tests/test_invalid_orfs.py' 2025-09-08T07:18:19,591 adding 'Mikado/tests/test_json.py' 2025-09-08T07:18:19,592 adding 'Mikado/tests/test_metrics.py' 2025-09-08T07:18:19,593 adding 'Mikado/tests/test_modifications.py' 2025-09-08T07:18:19,594 adding 'Mikado/tests/test_serialisation.py' 2025-09-08T07:18:19,595 adding 'Mikado/tests/test_splitting.py' 2025-09-08T07:18:19,597 adding 'Mikado/tests/test_system_calls.py' 2025-09-08T07:18:19,599 adding 'Mikado/tests/test_transcript_checker.py' 2025-09-08T07:18:19,600 adding 'Mikado/tests/test_transcript_methods.py' 2025-09-08T07:18:19,602 adding 'Mikado/tests/transcript_tester_negative.py' 2025-09-08T07:18:19,605 adding 'Mikado/tests/transcript_tester_positive.py' 2025-09-08T07:18:19,608 adding 'Mikado/tests/transcript_tester_single.py' 2025-09-08T07:18:19,609 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2025-09-08T07:18:19,611 adding 'Mikado/tests/trinity.gff3' 2025-09-08T07:18:19,613 adding 'Mikado/tests/trinity.gtf' 2025-09-08T07:18:19,614 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2025-09-08T07:18:19,615 adding 'Mikado/tests/trinity_stats.txt' 2025-09-08T07:18:20,322 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2025-09-08T07:18:20,364 adding 'Mikado/tests/utilities_tester.py' 2025-09-08T07:18:20,365 adding 'Mikado/tests/__pycache__/__init__.cpython-34.pyc' 2025-09-08T07:18:20,366 adding 'Mikado/tests/__pycache__/__init__.cpython-35.pyc' 2025-09-08T07:18:20,366 adding 'Mikado/tests/__pycache__/__init__.cpython-36.pyc' 2025-09-08T07:18:20,370 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc' 2025-09-08T07:18:20,374 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc' 2025-09-08T07:18:20,378 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc' 2025-09-08T07:18:20,379 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc' 2025-09-08T07:18:20,381 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc' 2025-09-08T07:18:20,382 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc' 2025-09-08T07:18:20,389 adding 'Mikado/tests/__pycache__/locus_tester.cpython-34.pyc' 2025-09-08T07:18:20,394 adding 'Mikado/tests/__pycache__/locus_tester.cpython-35.pyc' 2025-09-08T07:18:20,400 adding 'Mikado/tests/__pycache__/locus_tester.cpython-36.pyc' 2025-09-08T07:18:20,406 adding 'Mikado/tests/__pycache__/orf_tester.cpython-34.pyc' 2025-09-08T07:18:20,412 adding 'Mikado/tests/__pycache__/orf_tester.cpython-35.pyc' 2025-09-08T07:18:20,417 adding 'Mikado/tests/__pycache__/orf_tester.cpython-36.pyc' 2025-09-08T07:18:20,418 adding 'Mikado/tests/__pycache__/parser_testing.cpython-34.pyc' 2025-09-08T07:18:20,419 adding 'Mikado/tests/__pycache__/parser_testing.cpython-35.pyc' 2025-09-08T07:18:20,420 adding 'Mikado/tests/__pycache__/parser_testing.cpython-36.pyc' 2025-09-08T07:18:20,421 adding 'Mikado/tests/__pycache__/phases_checker.cpython-34.pyc' 2025-09-08T07:18:20,422 adding 'Mikado/tests/__pycache__/phases_checker.cpython-35.pyc' 2025-09-08T07:18:20,424 adding 'Mikado/tests/__pycache__/system_checks.cpython-35.pyc' 2025-09-08T07:18:20,425 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc' 2025-09-08T07:18:20,426 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc' 2025-09-08T07:18:20,427 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc' 2025-09-08T07:18:20,428 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc' 2025-09-08T07:18:20,428 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc' 2025-09-08T07:18:20,429 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc' 2025-09-08T07:18:20,430 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc' 2025-09-08T07:18:20,431 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc' 2025-09-08T07:18:20,432 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc' 2025-09-08T07:18:20,433 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc' 2025-09-08T07:18:20,434 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc' 2025-09-08T07:18:20,435 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc' 2025-09-08T07:18:20,435 adding 'Mikado/tests/__pycache__/test_gene.cpython-34.pyc' 2025-09-08T07:18:20,436 adding 'Mikado/tests/__pycache__/test_gene.cpython-35.pyc' 2025-09-08T07:18:20,437 adding 'Mikado/tests/__pycache__/test_gene.cpython-36.pyc' 2025-09-08T07:18:20,438 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc' 2025-09-08T07:18:20,439 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc' 2025-09-08T07:18:20,440 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc' 2025-09-08T07:18:20,441 adding 'Mikado/tests/__pycache__/test_json.cpython-34.pyc' 2025-09-08T07:18:20,442 adding 'Mikado/tests/__pycache__/test_json.cpython-35.pyc' 2025-09-08T07:18:20,442 adding 'Mikado/tests/__pycache__/test_json.cpython-36.pyc' 2025-09-08T07:18:20,443 adding 'Mikado/tests/__pycache__/test_metrics.cpython-34.pyc' 2025-09-08T07:18:20,445 adding 'Mikado/tests/__pycache__/test_metrics.cpython-35.pyc' 2025-09-08T07:18:20,446 adding 'Mikado/tests/__pycache__/test_metrics.cpython-36.pyc' 2025-09-08T07:18:20,447 adding 'Mikado/tests/__pycache__/test_modifications.cpython-34.pyc' 2025-09-08T07:18:20,447 adding 'Mikado/tests/__pycache__/test_modifications.cpython-35.pyc' 2025-09-08T07:18:20,448 adding 'Mikado/tests/__pycache__/test_modifications.cpython-36.pyc' 2025-09-08T07:18:20,450 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc' 2025-09-08T07:18:20,451 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc' 2025-09-08T07:18:20,452 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc' 2025-09-08T07:18:20,453 adding 'Mikado/tests/__pycache__/test_splitting.cpython-34.pyc' 2025-09-08T07:18:20,455 adding 'Mikado/tests/__pycache__/test_splitting.cpython-35.pyc' 2025-09-08T07:18:20,456 adding 'Mikado/tests/__pycache__/test_splitting.cpython-36.pyc' 2025-09-08T07:18:20,460 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc' 2025-09-08T07:18:20,464 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc' 2025-09-08T07:18:20,467 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc' 2025-09-08T07:18:20,469 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc' 2025-09-08T07:18:20,470 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc' 2025-09-08T07:18:20,471 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc' 2025-09-08T07:18:20,473 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc' 2025-09-08T07:18:20,475 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc' 2025-09-08T07:18:20,477 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc' 2025-09-08T07:18:20,479 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc' 2025-09-08T07:18:20,482 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc' 2025-09-08T07:18:20,485 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc' 2025-09-08T07:18:20,490 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc' 2025-09-08T07:18:20,495 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc' 2025-09-08T07:18:20,499 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc' 2025-09-08T07:18:20,503 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc' 2025-09-08T07:18:20,506 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc' 2025-09-08T07:18:20,509 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc' 2025-09-08T07:18:20,510 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc' 2025-09-08T07:18:20,512 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc' 2025-09-08T07:18:20,513 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc' 2025-09-08T07:18:20,514 adding 'Mikado/tests/fusion_test/fusion_test.log' 2025-09-08T07:18:20,514 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2025-09-08T07:18:20,515 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2025-09-08T07:18:20,516 adding 'Mikado/transcripts/__init__.py' 2025-09-08T07:18:20,517 adding 'Mikado/transcripts/clique_methods.py' 2025-09-08T07:18:20,527 adding 'Mikado/transcripts/transcript.py' 2025-09-08T07:18:20,530 adding 'Mikado/transcripts/transcriptchecker.py' 2025-09-08T07:18:20,530 adding 'Mikado/transcripts/transcript_methods/__init__.py' 2025-09-08T07:18:20,533 adding 'Mikado/transcripts/transcript_methods/finalizing.py' 2025-09-08T07:18:20,534 adding 'Mikado/transcripts/transcript_methods/printing.py' 2025-09-08T07:18:20,537 adding 'Mikado/transcripts/transcript_methods/retrieval.py' 2025-09-08T07:18:20,541 adding 'Mikado/transcripts/transcript_methods/splitting.py' 2025-09-08T07:18:20,542 adding 'Mikado/utilities/__init__.py' 2025-09-08T07:18:20,543 adding 'Mikado/utilities/dbutils.py' 2025-09-08T07:18:20,613 adding 'Mikado/utilities/intervaltree.c' 2025-09-08T07:18:20,829 adding 'Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T07:18:20,838 adding 'Mikado/utilities/intervaltree.pyx' 2025-09-08T07:18:20,839 adding 'Mikado/utilities/log_utils.py' 2025-09-08T07:18:20,871 adding 'Mikado/utilities/overlap.c' 2025-09-08T07:18:20,921 adding 'Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T07:18:20,923 adding 'Mikado/utilities/overlap.pxd' 2025-09-08T07:18:20,923 adding 'Mikado/utilities/overlap.pyx' 2025-09-08T07:18:20,924 adding 'mikado-1.0.0b10.data/scripts/add_transcript_feature_to_gtf.py' 2025-09-08T07:18:20,925 adding 'mikado-1.0.0b10.data/scripts/align_collect.py' 2025-09-08T07:18:20,926 adding 'mikado-1.0.0b10.data/scripts/analyse_metrics.py' 2025-09-08T07:18:20,927 adding 'mikado-1.0.0b10.data/scripts/asm_collect.py' 2025-09-08T07:18:20,927 adding 'mikado-1.0.0b10.data/scripts/bam2gtf.py' 2025-09-08T07:18:20,928 adding 'mikado-1.0.0b10.data/scripts/class_run.py' 2025-09-08T07:18:20,929 adding 'mikado-1.0.0b10.data/scripts/create_model.py' 2025-09-08T07:18:20,930 adding 'mikado-1.0.0b10.data/scripts/getFastaFromIds.py' 2025-09-08T07:18:20,931 adding 'mikado-1.0.0b10.data/scripts/gffjunc_to_bed12.py' 2025-09-08T07:18:20,932 adding 'mikado-1.0.0b10.data/scripts/grep.py' 2025-09-08T07:18:20,933 adding 'mikado-1.0.0b10.data/scripts/merge_junction_bed12.py' 2025-09-08T07:18:20,933 adding 'mikado-1.0.0b10.data/scripts/remove_from_embl.py' 2025-09-08T07:18:20,934 adding 'mikado-1.0.0b10.data/scripts/sanitize_blast_db.py' 2025-09-08T07:18:20,935 adding 'mikado-1.0.0b10.data/scripts/self_training.py' 2025-09-08T07:18:20,936 adding 'mikado-1.0.0b10.data/scripts/split_fasta.py' 2025-09-08T07:18:20,937 adding 'mikado-1.0.0b10.data/scripts/trim_long_introns.py' 2025-09-08T07:18:20,938 adding 'mikado-1.0.0b10.dist-info/licenses/AUTHORS' 2025-09-08T07:18:20,939 adding 'mikado-1.0.0b10.dist-info/METADATA' 2025-09-08T07:18:20,939 adding 'mikado-1.0.0b10.dist-info/WHEEL' 2025-09-08T07:18:20,940 adding 'mikado-1.0.0b10.dist-info/entry_points.txt' 2025-09-08T07:18:20,940 adding 'mikado-1.0.0b10.dist-info/top_level.txt' 2025-09-08T07:18:20,944 adding 'mikado-1.0.0b10.dist-info/RECORD' 2025-09-08T07:18:20,946 removing build/bdist.linux-armv7l/wheel 2025-09-08T07:18:21,110 Building wheel for mikado (setup.py): finished with status 'done' 2025-09-08T07:18:21,291 Created wheel for mikado: filename=mikado-1.0.0b10-cp313-cp313-linux_armv7l.whl size=17689275 sha256=ffea753ff371f991add460bcf1ac33f764f959d104fbcee732e221437348aa03 2025-09-08T07:18:21,291 Stored in directory: /tmp/pip-ephem-wheel-cache-shrrovi1/wheels/6f/75/f6/d1388f1fb561cddf04117460f81f1e6b7dfc318e48416f29be 2025-09-08T07:18:21,305 Successfully built mikado 2025-09-08T07:18:21,342 Removed build tracker: '/tmp/pip-build-tracker-ovim4th9'