2025-09-08T07:29:25,552 Created temporary directory: /tmp/pip-build-tracker-tkmj273g 2025-09-08T07:29:25,553 Initialized build tracking at /tmp/pip-build-tracker-tkmj273g 2025-09-08T07:29:25,553 Created build tracker: /tmp/pip-build-tracker-tkmj273g 2025-09-08T07:29:25,553 Entered build tracker: /tmp/pip-build-tracker-tkmj273g 2025-09-08T07:29:25,554 Created temporary directory: /tmp/pip-wheel-ylsfrvgf 2025-09-08T07:29:25,557 Created temporary directory: /tmp/pip-ephem-wheel-cache-axrdrlnb 2025-09-08T07:29:25,613 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T07:29:25,615 2 location(s) to search for versions of limix-inference: 2025-09-08T07:29:25,615 * https://pypi.org/simple/limix-inference/ 2025-09-08T07:29:25,615 * https://www.piwheels.org/simple/limix-inference/ 2025-09-08T07:29:25,616 Fetching project page and analyzing links: https://pypi.org/simple/limix-inference/ 2025-09-08T07:29:25,616 Getting page https://pypi.org/simple/limix-inference/ 2025-09-08T07:29:25,617 Found index url https://pypi.org/simple/ 2025-09-08T07:29:25,690 Fetched page https://pypi.org/simple/limix-inference/ as application/vnd.pypi.simple.v1+json 2025-09-08T07:29:25,694 Found link https://files.pythonhosted.org/packages/2f/8b/58de27bc3ca08177dc6dd881665924c7a84460676a3c51cb8babe7c566e9/limix-inference-1.0.2.dev1.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2.dev1 2025-09-08T07:29:25,694 Found link https://files.pythonhosted.org/packages/26/fb/ef0d4f233d2924bcd50c0130cbde768c92f9ff985b19fa7b5a9b60f79404/limix-inference-1.0.2.dev2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2.dev2 2025-09-08T07:29:25,695 Found link https://files.pythonhosted.org/packages/53/e7/bbd64f5d5a69d001309eab399227436898368064bf4414f38f44d9a35d38/limix-inference-1.0.2.dev3.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2.dev3 2025-09-08T07:29:25,695 Found link https://files.pythonhosted.org/packages/24/86/6d5b17f7d90242e26a1b17e2b5b79ce801567feda2ca45757578ebdc48d1/limix-inference-1.0.2.dev4.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2.dev4 2025-09-08T07:29:25,695 Found link https://files.pythonhosted.org/packages/c2/e1/b042df0253b31583b3a6658c89050e66c7e7b6f1fb038fd6f9d52f51285b/limix-inference-1.0.2.dev5.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2.dev5 2025-09-08T07:29:25,695 Found link https://files.pythonhosted.org/packages/73/24/13172b0c6b09c5eaa607e8157d48b24fa4c6635d3c39e6eccf574a596077/limix-inference-1.0.2rc0.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2rc0 2025-09-08T07:29:25,696 Found link https://files.pythonhosted.org/packages/cf/b5/4e4decf10b7eb305450ceb4cc9b9be40a4783e2abbaeee0e49a216542db6/limix-inference-1.0.2rc1.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2rc1 2025-09-08T07:29:25,696 Found link https://files.pythonhosted.org/packages/05/36/dc8947547cb84436e86e1c7845eb0c232e3da227055f2d6d614b8d8a6f28/limix-inference-1.0.2rc2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2rc2 2025-09-08T07:29:25,696 Found link https://files.pythonhosted.org/packages/1f/a9/6401795d463c6cc4ae061fa7dfcf9656cf58e42e3b8f90917498406439f0/limix-inference-1.0.2rc3.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2rc3 2025-09-08T07:29:25,696 Found link https://files.pythonhosted.org/packages/0b/8a/750cfdae71af53c974ae61078f584520fb3d2a042ed57017278480cdd787/limix-inference-1.0.2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.2 2025-09-08T07:29:25,696 Found link https://files.pythonhosted.org/packages/74/39/b0f4e1d92fa676c3f8c517e0e660ecd3f37f71d0d6afb90341d70221ab4a/limix-inference-1.0.3.dev0.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.0.3.dev0 2025-09-08T07:29:25,697 Found link 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https://files.pythonhosted.org/packages/b8/e8/c54d52bdcd945b9a4c71fbbcf03797d190000ce37126c9f9ae3d46619dcf/limix-inference-1.1.2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.2 2025-09-08T07:29:25,701 Found link https://files.pythonhosted.org/packages/7e/09/2c88d1b16d0cde089f51eb54790c7ce0cdf5afc57592b7b55e8222203ce0/limix-inference-1.1.3.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.3 2025-09-08T07:29:25,702 Found link https://files.pythonhosted.org/packages/cf/21/4f4f8caaf4ebef6d5948528c8a0dcf5863ab819faf97123797c57fe2c675/limix-inference-1.1.4.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.4 2025-09-08T07:29:25,702 Found link https://files.pythonhosted.org/packages/e8/cd/0dddf22fb999f514e9d2f6a4a95a5ebe4fbf677fae4c3136d14d258ce1c8/limix-inference-1.1.5.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.5 2025-09-08T07:29:25,702 Found link https://files.pythonhosted.org/packages/37/90/968ce27b1e6d3350b72dbebe7cec3652856460991565a814850b63c91bc9/limix-inference-1.1.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.6 2025-09-08T07:29:25,702 Fetching project page and analyzing links: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T07:29:25,703 Getting page https://www.piwheels.org/simple/limix-inference/ 2025-09-08T07:29:25,703 Found index url https://www.piwheels.org/simple/ 2025-09-08T07:29:25,798 Fetched page https://www.piwheels.org/simple/limix-inference/ as text/html 2025-09-08T07:29:25,800 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.6-py3-none-any.whl#sha256=651f7582bd2a442b4225a69469bcda5fbf76a162526fbc7a729f3c500e3a1213 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T07:29:25,801 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.5-py3-none-any.whl#sha256=5bda56053fd5f49df45a3fa0355aa2e8eb7188b2034a5f8f3ef53a34d59f3c4c (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T07:29:25,801 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.4-py3-none-any.whl#sha256=8ac3fc4a2bb47fe430b536bd2ab999c9f1adf98649c81b84e3c3375bae68a7f5 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T07:29:25,801 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.3-py3-none-any.whl#sha256=ea94a7bf8b3e34500a9a155260fba2b2080259767f9520885d86caa0db8f82be (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T07:29:25,801 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.2-py3-none-any.whl#sha256=dd03018c1fab1132bb8de87bb4acad84ea64bc1ef102b6468e39cc3402fb53ff (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T07:29:25,801 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.1-py3-none-any.whl#sha256=e2cf1f0dceb70a5e3e8c599f7b837ff2e5f720a0b8eeadc3a753f67d5ced9884 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T07:29:25,801 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.0-py3-none-any.whl#sha256=91b43e3e511c0d914e6a452b861a3ac5f01283a03917ed6fe513e7e1d56a9f60 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T07:29:25,801 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev2-py3-none-any.whl#sha256=bef50a5f6deb5259a976b1356a18e19f2d77ab81d9e24ea0289eff832e394a68 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T07:29:25,801 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev1-py3-none-any.whl#sha256=94b2feb2718da440d09feb6bb06ec54ff2d5b2dec96f825271b8c3834da7e1cd (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T07:29:25,802 Skipping link: not a file: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T07:29:25,802 Skipping link: not a file: https://pypi.org/simple/limix-inference/ 2025-09-08T07:29:25,827 Given no hashes to check 1 links for project 'limix-inference': discarding no candidates 2025-09-08T07:29:25,828 Collecting limix-inference==1.0.15 2025-09-08T07:29:25,830 Created temporary directory: /tmp/pip-unpack-xkajamui 2025-09-08T07:29:25,981 Downloading limix-inference-1.0.15.tar.gz (30 kB) 2025-09-08T07:29:26,046 Added limix-inference==1.0.15 from https://files.pythonhosted.org/packages/84/89/05477413b3509de33ce70839d07f640c8b6e2284a8949dc4940ebee4bd95/limix-inference-1.0.15.tar.gz to build tracker '/tmp/pip-build-tracker-tkmj273g' 2025-09-08T07:29:26,047 Running setup.py (path:/tmp/pip-wheel-ylsfrvgf/limix-inference_567d74748bab4d889ab8d2fb23e3eae4/setup.py) egg_info for package limix-inference 2025-09-08T07:29:26,047 Created temporary directory: /tmp/pip-pip-egg-info-gcg3wwy7 2025-09-08T07:29:26,048 Preparing metadata (setup.py): started 2025-09-08T07:29:26,048 Running command python setup.py egg_info 2025-09-08T07:29:27,288 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T07:29:27,288 !! 2025-09-08T07:29:27,289 ******************************************************************************** 2025-09-08T07:29:27,289 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T07:29:27,289 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T07:29:27,289 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T07:29:27,289 or your builds will no longer be supported. 2025-09-08T07:29:27,289 ******************************************************************************** 2025-09-08T07:29:27,289 !! 2025-09-08T07:29:27,290 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T07:29:33,950 DEPRECATION: Building 'ncephes' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'ncephes'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T07:29:37,107 error: subprocess-exited-with-error 2025-09-08T07:29:37,107 × python setup.py bdist_wheel did not run successfully. 2025-09-08T07:29:37,107 │ exit code: 1 2025-09-08T07:29:37,107 ╰─> [60 lines of output] 2025-09-08T07:29:37,107 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T07:29:37,107 !! 2025-09-08T07:29:37,107 ******************************************************************************** 2025-09-08T07:29:37,108 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T07:29:37,108 License :: OSI Approved :: MIT License 2025-09-08T07:29:37,108 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T07:29:37,108 ******************************************************************************** 2025-09-08T07:29:37,108 !! 2025-09-08T07:29:37,108 self._finalize_license_expression() 2025-09-08T07:29:37,108 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T07:29:37,109 !! 2025-09-08T07:29:37,109 ******************************************************************************** 2025-09-08T07:29:37,109 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T07:29:37,109 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T07:29:37,109 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T07:29:37,109 or your builds will no longer be supported. 2025-09-08T07:29:37,110 ******************************************************************************** 2025-09-08T07:29:37,110 !! 2025-09-08T07:29:37,110 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T07:29:37,110 running bdist_wheel 2025-09-08T07:29:37,110 running build 2025-09-08T07:29:37,110 running build_py 2025-09-08T07:29:37,110 creating build/lib.linux-armv7l-cpython-313/ncephes 2025-09-08T07:29:37,111 copying ncephes/__init__.py -> build/lib.linux-armv7l-cpython-313/ncephes 2025-09-08T07:29:37,111 copying ncephes/_testit.py -> build/lib.linux-armv7l-cpython-313/ncephes 2025-09-08T07:29:37,111 creating build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T07:29:37,111 copying ncephes/test/test_bessel.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T07:29:37,111 copying ncephes/test/test_misc.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T07:29:37,111 copying ncephes/test/test_cprob.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T07:29:37,111 copying ncephes/test/test_numba.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T07:29:37,111 copying ncephes/test/__init__.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T07:29:37,111 copying ncephes/test/test_ellf.py -> build/lib.linux-armv7l-cpython-313/ncephes/test 2025-09-08T07:29:37,112 running egg_info 2025-09-08T07:29:37,112 writing ncephes.egg-info/PKG-INFO 2025-09-08T07:29:37,112 writing dependency_links to ncephes.egg-info/dependency_links.txt 2025-09-08T07:29:37,112 writing requirements to ncephes.egg-info/requires.txt 2025-09-08T07:29:37,112 writing top-level names to ncephes.egg-info/top_level.txt 2025-09-08T07:29:37,112 reading manifest file 'ncephes.egg-info/SOURCES.txt' 2025-09-08T07:29:37,112 reading manifest template 'MANIFEST.in' 2025-09-08T07:29:37,112 adding license file 'LICENSE' 2025-09-08T07:29:37,112 writing manifest file 'ncephes.egg-info/SOURCES.txt' 2025-09-08T07:29:37,113 copying ncephes/interface.h -> build/lib.linux-armv7l-cpython-313/ncephes 2025-09-08T07:29:37,113 running build_ext 2025-09-08T07:29:37,113 generating cffi module 'build/temp.linux-armv7l-cpython-313/ncephes._ffi.c' 2025-09-08T07:29:37,113 creating build/temp.linux-armv7l-cpython-313 2025-09-08T07:29:37,113 building 'ncephes._ffi' extension 2025-09-08T07:29:37,113 creating build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313 2025-09-08T07:29:37,113 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/python3.13 -c build/temp.linux-armv7l-cpython-313/ncephes._ffi.c -o build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313/ncephes._ffi.o 2025-09-08T07:29:37,113 build/temp.linux-armv7l-cpython-313/ncephes._ffi.c:573:10: fatal error: hcephes.h: No such file or directory 2025-09-08T07:29:37,114 573 | #include "hcephes.h" 2025-09-08T07:29:37,114 | ^~~~~~~~~~~ 2025-09-08T07:29:37,114 compilation terminated. 2025-09-08T07:29:37,114 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T07:29:37,114 [end of output] 2025-09-08T07:29:37,114 note: This error originates from a subprocess, and is likely not a problem with pip. 2025-09-08T07:29:37,114 ERROR: Failed building wheel for ncephes 2025-09-08T07:29:39,244 ERROR: Failed to build one or more wheels 2025-09-08T07:29:39,435 Traceback (most recent call last): 2025-09-08T07:29:39,436 File "/usr/local/lib/python3.13/dist-packages/setuptools/installer.py", line 121, in _fetch_build_egg_no_warn 2025-09-08T07:29:39,436 subprocess.check_call(cmd) 2025-09-08T07:29:39,436 ~~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T07:29:39,437 File "/usr/lib/python3.13/subprocess.py", line 419, in check_call 2025-09-08T07:29:39,437 raise CalledProcessError(retcode, cmd) 2025-09-08T07:29:39,437 subprocess.CalledProcessError: Command '['/usr/bin/python3', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmphrmbnm4f', '--quiet', 'ncephes']' returned non-zero exit status 1. 2025-09-08T07:29:39,437 The above exception was the direct cause of the following exception: 2025-09-08T07:29:39,437 Traceback (most recent call last): 2025-09-08T07:29:39,439 File "", line 2, in 2025-09-08T07:29:39,440 exec(compile(''' 2025-09-08T07:29:39,440 ~~~~^^^^^^^^^^^^ 2025-09-08T07:29:39,440 # This is -- a caller that pip uses to run setup.py 2025-09-08T07:29:39,440 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,440 ...<32 lines>... 2025-09-08T07:29:39,440 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T07:29:39,440 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,440 ''' % ('/tmp/pip-wheel-ylsfrvgf/limix-inference_567d74748bab4d889ab8d2fb23e3eae4/setup.py',), "", "exec")) 2025-09-08T07:29:39,441 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,441 File "", line 35, in 2025-09-08T07:29:39,441 File "/tmp/pip-wheel-ylsfrvgf/limix-inference_567d74748bab4d889ab8d2fb23e3eae4/setup.py", line 67, in 2025-09-08T07:29:39,441 setup_package() 2025-09-08T07:29:39,441 ~~~~~~~~~~~~~^^ 2025-09-08T07:29:39,441 File "/tmp/pip-wheel-ylsfrvgf/limix-inference_567d74748bab4d889ab8d2fb23e3eae4/setup.py", line 60, in setup_package 2025-09-08T07:29:39,441 setup(**metadata) 2025-09-08T07:29:39,441 ~~~~~^^^^^^^^^^^^ 2025-09-08T07:29:39,442 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 114, in setup 2025-09-08T07:29:39,442 _install_setup_requires(attrs) 2025-09-08T07:29:39,442 ~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^ 2025-09-08T07:29:39,442 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 87, in _install_setup_requires 2025-09-08T07:29:39,442 _fetch_build_eggs(dist) 2025-09-08T07:29:39,442 ~~~~~~~~~~~~~~~~~^^^^^^ 2025-09-08T07:29:39,442 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 92, in _fetch_build_eggs 2025-09-08T07:29:39,443 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T07:29:39,443 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,443 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 766, in fetch_build_eggs 2025-09-08T07:29:39,443 return _fetch_build_eggs(self, requires) 2025-09-08T07:29:39,443 File "/usr/local/lib/python3.13/dist-packages/setuptools/installer.py", line 54, in _fetch_build_eggs 2025-09-08T07:29:39,443 resolved_dists = [_fetch_build_egg_no_warn(dist, req) for req in needed_reqs] 2025-09-08T07:29:39,443 ~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2025-09-08T07:29:39,443 File "/usr/local/lib/python3.13/dist-packages/setuptools/installer.py", line 123, in _fetch_build_egg_no_warn 2025-09-08T07:29:39,444 raise DistutilsError(str(e)) from e 2025-09-08T07:29:39,444 distutils.errors.DistutilsError: Command '['/usr/bin/python3', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmphrmbnm4f', '--quiet', 'ncephes']' returned non-zero exit status 1. 2025-09-08T07:29:39,533 ERROR: python setup.py egg_info exited with 1 2025-09-08T07:29:39,545 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T07:29:39,545 exec(compile('"'"''"'"''"'"' 2025-09-08T07:29:39,545 # This is -- a caller that pip uses to run setup.py 2025-09-08T07:29:39,545 # 2025-09-08T07:29:39,545 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T07:29:39,545 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T07:29:39,545 # - It provides a clear error message when setuptools is not installed. 2025-09-08T07:29:39,545 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T07:29:39,545 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T07:29:39,545 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T07:29:39,545 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T07:29:39,545 import os, sys, tokenize, traceback 2025-09-08T07:29:39,545 2025-09-08T07:29:39,545 try: 2025-09-08T07:29:39,545 import setuptools 2025-09-08T07:29:39,545 except ImportError: 2025-09-08T07:29:39,545 print( 2025-09-08T07:29:39,545 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T07:29:39,545 "the build environment with exception:", 2025-09-08T07:29:39,545 file=sys.stderr, 2025-09-08T07:29:39,545 ) 2025-09-08T07:29:39,545 traceback.print_exc() 2025-09-08T07:29:39,545 sys.exit(1) 2025-09-08T07:29:39,545 2025-09-08T07:29:39,545 __file__ = %r 2025-09-08T07:29:39,545 sys.argv[0] = __file__ 2025-09-08T07:29:39,545 2025-09-08T07:29:39,545 if os.path.exists(__file__): 2025-09-08T07:29:39,545 filename = __file__ 2025-09-08T07:29:39,545 with tokenize.open(__file__) as f: 2025-09-08T07:29:39,545 setup_py_code = f.read() 2025-09-08T07:29:39,545 else: 2025-09-08T07:29:39,545 filename = "" 2025-09-08T07:29:39,545 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T07:29:39,545 2025-09-08T07:29:39,545 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T07:29:39,545 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ylsfrvgf/limix-inference_567d74748bab4d889ab8d2fb23e3eae4/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-gcg3wwy7[/] 2025-09-08T07:29:39,546 [bold magenta]cwd[/]: /tmp/pip-wheel-ylsfrvgf/limix-inference_567d74748bab4d889ab8d2fb23e3eae4/ 2025-09-08T07:29:39,546 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T07:29:39,547 ERROR: metadata generation failed 2025-09-08T07:29:39,554 Exception information: 2025-09-08T07:29:39,554 Traceback (most recent call last): 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T07:29:39,554 call_subprocess( 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~~~^ 2025-09-08T07:29:39,554 args, 2025-09-08T07:29:39,554 ^^^^^ 2025-09-08T07:29:39,554 ...<2 lines>... 2025-09-08T07:29:39,554 spinner=spinner, 2025-09-08T07:29:39,554 ^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 ) 2025-09-08T07:29:39,554 ^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T07:29:39,554 raise error 2025-09-08T07:29:39,554 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T07:29:39,554 2025-09-08T07:29:39,554 The above exception was the direct cause of the following exception: 2025-09-08T07:29:39,554 2025-09-08T07:29:39,554 Traceback (most recent call last): 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T07:29:39,554 status = _inner_run() 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T07:29:39,554 return self.run(options, args) 2025-09-08T07:29:39,554 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T07:29:39,554 return func(self, options, args) 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T07:29:39,554 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T07:29:39,554 result = self._result = resolver.resolve( 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~~~~^ 2025-09-08T07:29:39,554 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T07:29:39,554 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 ) 2025-09-08T07:29:39,554 ^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T07:29:39,554 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T07:29:39,554 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T07:29:39,554 if not criterion.candidates: 2025-09-08T07:29:39,554 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T07:29:39,554 return bool(self._sequence) 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T07:29:39,554 self._bool = any(self) 2025-09-08T07:29:39,554 ~~~^^^^^^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T07:29:39,554 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T07:29:39,554 ^^^^^^^^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T07:29:39,554 candidate = func() 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T07:29:39,554 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T07:29:39,554 link, template, name, version 2025-09-08T07:29:39,554 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 ) 2025-09-08T07:29:39,554 ^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T07:29:39,554 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~^ 2025-09-08T07:29:39,554 link, 2025-09-08T07:29:39,554 ^^^^^ 2025-09-08T07:29:39,554 ...<3 lines>... 2025-09-08T07:29:39,554 version=version, 2025-09-08T07:29:39,554 ^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 ) 2025-09-08T07:29:39,554 ^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T07:29:39,554 super().__init__( 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~~~~^ 2025-09-08T07:29:39,554 link=link, 2025-09-08T07:29:39,554 ^^^^^^^^^^ 2025-09-08T07:29:39,554 ...<4 lines>... 2025-09-08T07:29:39,554 version=version, 2025-09-08T07:29:39,554 ^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 ) 2025-09-08T07:29:39,554 ^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T07:29:39,554 self.dist = self._prepare() 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~^^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T07:29:39,554 dist = self._prepare_distribution() 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T07:29:39,554 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T07:29:39,554 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T07:29:39,554 dist = _get_prepared_distribution( 2025-09-08T07:29:39,554 req, 2025-09-08T07:29:39,554 ...<3 lines>... 2025-09-08T07:29:39,554 self.check_build_deps, 2025-09-08T07:29:39,554 ) 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T07:29:39,554 abstract_dist.prepare_distribution_metadata( 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T07:29:39,554 finder, build_isolation, check_build_deps 2025-09-08T07:29:39,554 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 ) 2025-09-08T07:29:39,554 ^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T07:29:39,554 self.req.prepare_metadata() 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T07:29:39,554 self.metadata_directory = generate_metadata_legacy( 2025-09-08T07:29:39,554 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T07:29:39,554 build_env=self.build_env, 2025-09-08T07:29:39,554 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 ...<3 lines>... 2025-09-08T07:29:39,554 details=details, 2025-09-08T07:29:39,554 ^^^^^^^^^^^^^^^^ 2025-09-08T07:29:39,554 ) 2025-09-08T07:29:39,554 ^ 2025-09-08T07:29:39,554 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T07:29:39,554 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T07:29:39,554 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T07:29:39,576 Removed limix-inference==1.0.15 from https://files.pythonhosted.org/packages/84/89/05477413b3509de33ce70839d07f640c8b6e2284a8949dc4940ebee4bd95/limix-inference-1.0.15.tar.gz from build tracker '/tmp/pip-build-tracker-tkmj273g' 2025-09-08T07:29:39,577 Removed build tracker: '/tmp/pip-build-tracker-tkmj273g'