2025-09-08T07:39:08,564 Created temporary directory: /tmp/pip-build-tracker-t92zdim4 2025-09-08T07:39:08,565 Initialized build tracking at /tmp/pip-build-tracker-t92zdim4 2025-09-08T07:39:08,565 Created build tracker: /tmp/pip-build-tracker-t92zdim4 2025-09-08T07:39:08,565 Entered build tracker: /tmp/pip-build-tracker-t92zdim4 2025-09-08T07:39:08,565 Created temporary directory: /tmp/pip-wheel-i9ar5ulc 2025-09-08T07:39:08,569 Created temporary directory: /tmp/pip-ephem-wheel-cache-phq8o951 2025-09-08T07:39:08,625 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T07:39:08,628 2 location(s) to search for versions of arv: 2025-09-08T07:39:08,628 * https://pypi.org/simple/arv/ 2025-09-08T07:39:08,628 * https://www.piwheels.org/simple/arv/ 2025-09-08T07:39:08,628 Fetching project page and analyzing links: https://pypi.org/simple/arv/ 2025-09-08T07:39:08,628 Getting page https://pypi.org/simple/arv/ 2025-09-08T07:39:08,630 Found index url https://pypi.org/simple/ 2025-09-08T07:39:08,776 Fetched page https://pypi.org/simple/arv/ as application/vnd.pypi.simple.v1+json 2025-09-08T07:39:08,784 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/79/cb/d0a432e6bee84946f2a99c6e1c18757519d9a29a8a93e5cec5a4c6ec0b13/arv-0.1-cp27-cp27m-macosx_10_12_x86_64.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,784 Found link https://files.pythonhosted.org/packages/28/bf/8f39399e129e77e88084cd6553ed5b02132404fa5aa7953ec357cd53824c/arv-0.1.tar.gz (from https://pypi.org/simple/arv/), version: 0.1 2025-09-08T07:39:08,785 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/d1/d1/be5f1eb8ad00dbf7128d7c698fe2c3d3aac06329d6d2564fa33fac4d81cb/arv-0.2-cp27-cp27m-macosx_10_12_x86_64.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,786 Found link https://files.pythonhosted.org/packages/c1/48/5c084fc21937e4cde5752d10c4b4e123e6a24df37c4acf8cce4dabf00258/arv-0.2.tar.gz (from https://pypi.org/simple/arv/), version: 0.2 2025-09-08T07:39:08,786 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/85/fc/ef4dda5805f022dd0766af26ebb943a8671283f3e5ce1119dff6d45200c0/arv-0.3-cp27-cp27m-macosx_10_12_x86_64.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,787 Found link https://files.pythonhosted.org/packages/d2/f2/c62af9993167d6dcea891d55f368f70455ec0bb99137ee3cb1e144cd50e4/arv-0.3.tar.gz (from https://pypi.org/simple/arv/), version: 0.3 2025-09-08T07:39:08,787 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/82/41/a607266511cfc54d7c07527c81d2a0730b07af7eab1d93accb5ca993f08c/arv-0.4-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,788 Found link https://files.pythonhosted.org/packages/e0/ed/4f466615e32e971598cf6cceefaf01c8b3b65c50c3e1fbc2481dde289ac8/arv-0.4.tar.gz (from https://pypi.org/simple/arv/), version: 0.4 2025-09-08T07:39:08,788 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/65/0e/997a9d6bc4eaa38b1bf96da00e4907d04fefc3ce74e8664ed6cbe90d3697/arv-0.5-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,789 Found link https://files.pythonhosted.org/packages/37/da/f94035a93931c4826d92cb348d6c8267186e2f5e1a12843a7ab25afe2c47/arv-0.5.tar.gz (from https://pypi.org/simple/arv/), version: 0.5 2025-09-08T07:39:08,789 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/8b/3c/411121f0b0b76e07dc693603a3c270b3608ee4d30813fefd1c3d7e809cf2/arv-0.6-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,790 Found link https://files.pythonhosted.org/packages/b3/85/ab31b736c04773e7ce875239145aaabc24de00de512baf674c6f6b5a12e9/arv-0.6.tar.gz (from https://pypi.org/simple/arv/), version: 0.6 2025-09-08T07:39:08,790 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/54/f8/f43e9bb124f4862e39d7510a1456a57e9cb8be843a99effd466a5ee9287c/arv-0.7-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,791 Found link https://files.pythonhosted.org/packages/cf/48/021558e12082f4fc32ab980a52b569719d440167866aa0ded82c3714bcc1/arv-0.7.tar.gz (from https://pypi.org/simple/arv/), version: 0.7 2025-09-08T07:39:08,791 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/a9/5b/efef04f913f5de9c7d612f80e702b03982dba0c38c665fa237247aaf5e18/arv-0.8-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,791 Found link https://files.pythonhosted.org/packages/89/13/53bc0c6ed04333128a2a85f910fed8a0e65505fb89d181ff41571161c452/arv-0.8.tar.gz (from https://pypi.org/simple/arv/), version: 0.8 2025-09-08T07:39:08,791 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/d9/4a/0f9909c577bb6d493ad082a187bc37820385cf0f4b94ae745d54dc5f1604/arv-0.9-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,792 Found link https://files.pythonhosted.org/packages/ce/90/aa9cb9012bf7fc3671ccad13625521ddd73e53b355ab216c5e1ad40eaa9c/arv-0.9.tar.gz (from https://pypi.org/simple/arv/), version: 0.9 2025-09-08T07:39:08,792 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/98/5c/34d34db646d1caf1f55deadb4b8784dc1ed21e46f20870648eec5a0491de/arv-0.9.1-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,792 Found link https://files.pythonhosted.org/packages/d5/19/75a16aade4d435627c8bfa78193eb14bdfe7c8aec3529de79a762c8f48cf/arv-0.9.1.tar.gz (from https://pypi.org/simple/arv/), version: 0.9.1 2025-09-08T07:39:08,792 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/bc/09/e5e0750e2c608003861780d4807726937bdfca6bc5ab1ea04532cbef8dd8/arv-0.9.2-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:08,792 Found link https://files.pythonhosted.org/packages/c2/6a/7198d7adcb9e5f90080c5f2e0bd9dced045f174dd809267b626278995b67/arv-0.9.2.tar.gz (from https://pypi.org/simple/arv/), version: 0.9.2 2025-09-08T07:39:08,793 Fetching project page and analyzing links: https://www.piwheels.org/simple/arv/ 2025-09-08T07:39:08,793 Getting page https://www.piwheels.org/simple/arv/ 2025-09-08T07:39:08,794 Found index url https://www.piwheels.org/simple/ 2025-09-08T07:39:08,920 Fetched page https://www.piwheels.org/simple/arv/ as text/html 2025-09-08T07:39:08,934 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp35-cp35m-linux_armv6l.whl#sha256=a24895e558489efda5a61b13aaecd16af69c08ffdbf26e8d7a39ccf2c7d40541 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,934 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp35-cp35m-linux_armv7l.whl#sha256=a24895e558489efda5a61b13aaecd16af69c08ffdbf26e8d7a39ccf2c7d40541 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,935 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=d0ee8df526e60b6bdabba3f4f38af4cbe1adb3f28a2ef80a290016e65e706d74 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,935 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=d0ee8df526e60b6bdabba3f4f38af4cbe1adb3f28a2ef80a290016e65e706d74 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,935 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp311-cp311-linux_armv6l.whl#sha256=5036e76356d6dd19ee9a70949f815513655c35ce10d084e55aafd9aef1bf38bb (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,935 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp311-cp311-linux_armv7l.whl#sha256=5036e76356d6dd19ee9a70949f815513655c35ce10d084e55aafd9aef1bf38bb (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,935 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=adf8e774be41795eeec23c94e27a2400ff7b67118852ebaa6ad9a15fa8641b99 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,936 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=adf8e774be41795eeec23c94e27a2400ff7b67118852ebaa6ad9a15fa8641b99 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,936 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=0d6833aba5ff30e677a9a8c21adba718e44bbfd862526b7f0683a945de635780 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,936 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=0d6833aba5ff30e677a9a8c21adba718e44bbfd862526b7f0683a945de635780 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,936 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp311-cp311-linux_armv6l.whl#sha256=7ee74417ae07ea443f2de3f58942961e03143f23ff27af3c2c76f355d0b9b3e0 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,936 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp311-cp311-linux_armv7l.whl#sha256=7ee74417ae07ea443f2de3f58942961e03143f23ff27af3c2c76f355d0b9b3e0 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,937 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=105d1300f98aa54a88b69ffbc03363a4277f3a89f476bfb0072225ee50f1b4b3 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,937 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=105d1300f98aa54a88b69ffbc03363a4277f3a89f476bfb0072225ee50f1b4b3 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,937 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp37-cp37m-linux_armv7l.whl#sha256=72a379616b58ad8aaa06f91a8abf0f3335a4a9eae4bd34400dde6e8e49a9d187 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,937 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp37-cp37m-linux_armv6l.whl#sha256=72a379616b58ad8aaa06f91a8abf0f3335a4a9eae4bd34400dde6e8e49a9d187 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,937 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp311-cp311-linux_armv6l.whl#sha256=b285a3265bf2cb193c3add90e60d2362a5cd5157ecc6e16353ccd8358043197f (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,937 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp311-cp311-linux_armv7l.whl#sha256=b285a3265bf2cb193c3add90e60d2362a5cd5157ecc6e16353ccd8358043197f (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,938 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp39-cp39-linux_armv6l.whl#sha256=06892e40bbbd8980196eeb6994d5771016079e51a028b6ebf02d4ce449b99259 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,938 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp39-cp39-linux_armv7l.whl#sha256=06892e40bbbd8980196eeb6994d5771016079e51a028b6ebf02d4ce449b99259 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,938 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp37-cp37m-linux_armv7l.whl#sha256=74186641368e50cd4a468a71f3867d92e5cf2123cd4ed79f02af1e09444e0258 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,938 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp37-cp37m-linux_armv6l.whl#sha256=74186641368e50cd4a468a71f3867d92e5cf2123cd4ed79f02af1e09444e0258 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,938 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp311-cp311-linux_armv6l.whl#sha256=7d649565df1243d02f265e6a02a8d1abf2110f360cdd718b36180b7de99ec3d1 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,939 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp311-cp311-linux_armv7l.whl#sha256=7d649565df1243d02f265e6a02a8d1abf2110f360cdd718b36180b7de99ec3d1 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,939 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp39-cp39-linux_armv6l.whl#sha256=8896fac7efbec3937d1420d90065fb34476f71b4ecf552cf99c7f56ca85a01a5 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,939 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp39-cp39-linux_armv7l.whl#sha256=8896fac7efbec3937d1420d90065fb34476f71b4ecf552cf99c7f56ca85a01a5 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,939 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp37-cp37m-linux_armv7l.whl#sha256=a99b9668bef0851e128c0f2be3c8d5c60b75035ba6e22e162296b8e5f2348d95 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,939 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp37-cp37m-linux_armv6l.whl#sha256=a99b9668bef0851e128c0f2be3c8d5c60b75035ba6e22e162296b8e5f2348d95 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,939 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp311-cp311-linux_armv6l.whl#sha256=555befcce07c962d4d462dba66cf805af2c6e87aab8f92497fbbd96255d9cbfc (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,940 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp311-cp311-linux_armv7l.whl#sha256=555befcce07c962d4d462dba66cf805af2c6e87aab8f92497fbbd96255d9cbfc (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,940 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp39-cp39-linux_armv6l.whl#sha256=eb8d0f38eb751d643b047f70021d61e5b392734aca3f9d666c9279e03af9b6f3 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,940 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp39-cp39-linux_armv7l.whl#sha256=eb8d0f38eb751d643b047f70021d61e5b392734aca3f9d666c9279e03af9b6f3 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,940 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp37-cp37m-linux_armv6l.whl#sha256=68d879e001d7c325a3267be5377b6b8ed41120954a1364d80f9c3ba9c1b93185 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,940 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp37-cp37m-linux_armv7l.whl#sha256=68d879e001d7c325a3267be5377b6b8ed41120954a1364d80f9c3ba9c1b93185 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,940 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp311-cp311-linux_armv6l.whl#sha256=0b5884947dbfc6cbb1a210f82dbb35aeb59735df6ba8af6e681d2de9642554f9 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,941 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp311-cp311-linux_armv7l.whl#sha256=0b5884947dbfc6cbb1a210f82dbb35aeb59735df6ba8af6e681d2de9642554f9 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,941 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp39-cp39-linux_armv6l.whl#sha256=2a9b6e3dfd453df4ee8d77b6336a6b5d34626efebb992693d0cda67ee75d7af5 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,941 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp39-cp39-linux_armv7l.whl#sha256=2a9b6e3dfd453df4ee8d77b6336a6b5d34626efebb992693d0cda67ee75d7af5 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,941 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp37-cp37m-linux_armv6l.whl#sha256=0ca9beb6f78a17005d93ce486e61029f268d8650f8b8f4464257b0ae5e878a15 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,941 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp37-cp37m-linux_armv7l.whl#sha256=0ca9beb6f78a17005d93ce486e61029f268d8650f8b8f4464257b0ae5e878a15 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,942 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp311-cp311-linux_armv6l.whl#sha256=bc85aaf91f3f69f00676145e8f52664debcb5a9859d4be9fc78d33ec9425fb8c (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,942 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp311-cp311-linux_armv7l.whl#sha256=bc85aaf91f3f69f00676145e8f52664debcb5a9859d4be9fc78d33ec9425fb8c (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,942 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp39-cp39-linux_armv6l.whl#sha256=d2f75fec05ec23bd8e25288c9830e9c2aecf0b35d67b7b86f43dbfb1719300fb (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,942 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp39-cp39-linux_armv7l.whl#sha256=d2f75fec05ec23bd8e25288c9830e9c2aecf0b35d67b7b86f43dbfb1719300fb (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,942 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.4-cp37-cp37m-linux_armv6l.whl#sha256=141923acb2e6641363b21f3c9685cddd318ac5fb76c58f223bee3a6b46561f39 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,942 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.4-cp37-cp37m-linux_armv7l.whl#sha256=141923acb2e6641363b21f3c9685cddd318ac5fb76c58f223bee3a6b46561f39 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,943 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.4-cp311-cp311-linux_armv6l.whl#sha256=bcca4029b2cbb435794b9fe53dcf607c4554ea7b1a6bf39c59483cfb34479942 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,943 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.4-cp311-cp311-linux_armv7l.whl#sha256=bcca4029b2cbb435794b9fe53dcf607c4554ea7b1a6bf39c59483cfb34479942 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,943 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.4-cp39-cp39-linux_armv6l.whl#sha256=d5be234acfe7f413faa5835069537e22a95f0d0ee0b3ed4a6d6feb7996c4382b (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,943 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.4-cp39-cp39-linux_armv7l.whl#sha256=d5be234acfe7f413faa5835069537e22a95f0d0ee0b3ed4a6d6feb7996c4382b (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,943 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp37-cp37m-linux_armv7l.whl#sha256=26d52aed9484311d55e447d5265b27c14802d31a69da9cf2d45d260f26fa46b4 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,943 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp37-cp37m-linux_armv6l.whl#sha256=26d52aed9484311d55e447d5265b27c14802d31a69da9cf2d45d260f26fa46b4 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,944 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp35-cp35m-linux_armv7l.whl#sha256=c9106f3d6d7eef439775cbe34411cee7e62e3f2b2f86f46516edae3fbf99a289 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,944 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp35-cp35m-linux_armv6l.whl#sha256=c9106f3d6d7eef439775cbe34411cee7e62e3f2b2f86f46516edae3fbf99a289 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,944 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp34-cp34m-linux_armv6l.whl#sha256=ed275009326b38e690f838c7c510b804877a303d7539376dc14352352c455ad0 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,944 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp34-cp34m-linux_armv7l.whl#sha256=ed275009326b38e690f838c7c510b804877a303d7539376dc14352352c455ad0 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,944 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp311-cp311-linux_armv6l.whl#sha256=43f5f556e075925e8ebe35433ed64cb69612146e06d1c3b430a3616ee1d09ff2 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,945 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp311-cp311-linux_armv7l.whl#sha256=43f5f556e075925e8ebe35433ed64cb69612146e06d1c3b430a3616ee1d09ff2 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,945 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp39-cp39-linux_armv6l.whl#sha256=8f859eac2396718ed5f6e0336e95a72045992d4c223d813785f261f091b8976a (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,945 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp39-cp39-linux_armv7l.whl#sha256=8f859eac2396718ed5f6e0336e95a72045992d4c223d813785f261f091b8976a (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,945 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp37-cp37m-linux_armv6l.whl#sha256=476b9ba62b6830d59788c2f94ecd1ba1ad4aa05afa1325e04384035744cc685c (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,945 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp37-cp37m-linux_armv7l.whl#sha256=476b9ba62b6830d59788c2f94ecd1ba1ad4aa05afa1325e04384035744cc685c (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,945 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp34-cp34m-linux_armv6l.whl#sha256=789daee9c9460bc948cea4b7ad67ba14852fcdcaf1f7cc05a9caff5f29fc4989 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,946 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp34-cp34m-linux_armv7l.whl#sha256=789daee9c9460bc948cea4b7ad67ba14852fcdcaf1f7cc05a9caff5f29fc4989 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,946 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp311-cp311-linux_armv6l.whl#sha256=2ce238af44b2309bde8b459b63daa82a37f25d8ce7265e3aee3cca32094748ff (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,946 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp311-cp311-linux_armv7l.whl#sha256=2ce238af44b2309bde8b459b63daa82a37f25d8ce7265e3aee3cca32094748ff (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,946 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp39-cp39-linux_armv6l.whl#sha256=9b9408653ffa6f3ba6c61256d3d98526c8d9756977eb58c0eb366ae4bd7415e0 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,946 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp39-cp39-linux_armv7l.whl#sha256=9b9408653ffa6f3ba6c61256d3d98526c8d9756977eb58c0eb366ae4bd7415e0 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,946 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp37-cp37m-linux_armv6l.whl#sha256=b906f1682915f558a932ed3bbab253c11a07047eb01d3b95a252b56acc73926a (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,947 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp37-cp37m-linux_armv7l.whl#sha256=b906f1682915f558a932ed3bbab253c11a07047eb01d3b95a252b56acc73926a (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,947 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp34-cp34m-linux_armv6l.whl#sha256=818280bc9e151b2f4dd56750d68986dcbba9e05e88ec7960f04d9e4f8dfedb34 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,947 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp34-cp34m-linux_armv7l.whl#sha256=818280bc9e151b2f4dd56750d68986dcbba9e05e88ec7960f04d9e4f8dfedb34 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,947 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp311-cp311-linux_armv6l.whl#sha256=1f4d9551522aeb278013b9a2b1c8aa767daa8eed42df61d10bb85327832b0d6e (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,947 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp311-cp311-linux_armv7l.whl#sha256=1f4d9551522aeb278013b9a2b1c8aa767daa8eed42df61d10bb85327832b0d6e (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,948 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp39-cp39-linux_armv6l.whl#sha256=b6349ffe5bb401ff82b761aa01295847302851a6dc6cbdf4e0290a0a1aebb23c (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,948 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp39-cp39-linux_armv7l.whl#sha256=b6349ffe5bb401ff82b761aa01295847302851a6dc6cbdf4e0290a0a1aebb23c (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:08,948 Skipping link: not a file: https://www.piwheels.org/simple/arv/ 2025-09-08T07:39:08,948 Skipping link: not a file: https://pypi.org/simple/arv/ 2025-09-08T07:39:08,972 Given no hashes to check 1 links for project 'arv': discarding no candidates 2025-09-08T07:39:08,973 Collecting arv==0.1 2025-09-08T07:39:08,974 Created temporary directory: /tmp/pip-unpack-h9_o3abh 2025-09-08T07:39:09,118 Downloading arv-0.1.tar.gz (239 kB) 2025-09-08T07:39:09,222 Added arv==0.1 from https://files.pythonhosted.org/packages/28/bf/8f39399e129e77e88084cd6553ed5b02132404fa5aa7953ec357cd53824c/arv-0.1.tar.gz to build tracker '/tmp/pip-build-tracker-t92zdim4' 2025-09-08T07:39:09,223 Running setup.py (path:/tmp/pip-wheel-i9ar5ulc/arv_14a4e44726eb4c84815b599e39e7c0fb/setup.py) egg_info for package arv 2025-09-08T07:39:09,223 Created temporary directory: /tmp/pip-pip-egg-info-np00ibq3 2025-09-08T07:39:09,223 Preparing metadata (setup.py): started 2025-09-08T07:39:09,224 Running command python setup.py egg_info 2025-09-08T07:39:10,130 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T07:39:10,130 !! 2025-09-08T07:39:10,130 ******************************************************************************** 2025-09-08T07:39:10,130 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T07:39:10,130 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T07:39:10,130 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T07:39:10,131 or your builds will no longer be supported. 2025-09-08T07:39:10,131 ******************************************************************************** 2025-09-08T07:39:10,131 !! 2025-09-08T07:39:10,131 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T07:39:10,270 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T07:39:10,270 warnings.warn(msg) 2025-09-08T07:39:10,536 running egg_info 2025-09-08T07:39:10,610 creating /tmp/pip-pip-egg-info-np00ibq3/arv.egg-info 2025-09-08T07:39:10,610 writing /tmp/pip-pip-egg-info-np00ibq3/arv.egg-info/PKG-INFO 2025-09-08T07:39:10,611 writing dependency_links to /tmp/pip-pip-egg-info-np00ibq3/arv.egg-info/dependency_links.txt 2025-09-08T07:39:10,612 writing requirements to /tmp/pip-pip-egg-info-np00ibq3/arv.egg-info/requires.txt 2025-09-08T07:39:12,672 Compiling cython/_arv.pyx because it changed. 2025-09-08T07:39:12,672 [1/1] Cythonizing cython/_arv.pyx 2025-09-08T07:39:12,672 writing top-level names to /tmp/pip-pip-egg-info-np00ibq3/arv.egg-info/top_level.txt 2025-09-08T07:39:12,672 writing manifest file '/tmp/pip-pip-egg-info-np00ibq3/arv.egg-info/SOURCES.txt' 2025-09-08T07:39:12,900 reading manifest file '/tmp/pip-pip-egg-info-np00ibq3/arv.egg-info/SOURCES.txt' 2025-09-08T07:39:12,901 reading manifest template 'MANIFEST.in' 2025-09-08T07:39:12,905 adding license file 'LICENSES' 2025-09-08T07:39:12,905 adding license file 'COPYING' 2025-09-08T07:39:12,909 writing manifest file '/tmp/pip-pip-egg-info-np00ibq3/arv.egg-info/SOURCES.txt' 2025-09-08T07:39:13,238 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T07:39:13,243 Source in /tmp/pip-wheel-i9ar5ulc/arv_14a4e44726eb4c84815b599e39e7c0fb has version 0.1, which satisfies requirement arv==0.1 from https://files.pythonhosted.org/packages/28/bf/8f39399e129e77e88084cd6553ed5b02132404fa5aa7953ec357cd53824c/arv-0.1.tar.gz 2025-09-08T07:39:13,243 Removed arv==0.1 from https://files.pythonhosted.org/packages/28/bf/8f39399e129e77e88084cd6553ed5b02132404fa5aa7953ec357cd53824c/arv-0.1.tar.gz from build tracker '/tmp/pip-build-tracker-t92zdim4' 2025-09-08T07:39:13,247 Created temporary directory: /tmp/pip-unpack-97peiomi 2025-09-08T07:39:13,247 Created temporary directory: /tmp/pip-unpack-73080_cs 2025-09-08T07:39:13,247 Building wheels for collected packages: arv 2025-09-08T07:39:13,249 Created temporary directory: /tmp/pip-wheel-m9oe16gy 2025-09-08T07:39:13,249 DEPRECATION: Building 'arv' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'arv'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T07:39:13,250 Building wheel for arv (setup.py): started 2025-09-08T07:39:13,251 Destination directory: /tmp/pip-wheel-m9oe16gy 2025-09-08T07:39:13,251 Running command python setup.py bdist_wheel 2025-09-08T07:39:14,092 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T07:39:14,092 !! 2025-09-08T07:39:14,092 ******************************************************************************** 2025-09-08T07:39:14,092 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T07:39:14,092 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T07:39:14,093 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T07:39:14,093 or your builds will no longer be supported. 2025-09-08T07:39:14,093 ******************************************************************************** 2025-09-08T07:39:14,093 !! 2025-09-08T07:39:14,093 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T07:39:14,236 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T07:39:14,236 warnings.warn(msg) 2025-09-08T07:39:14,424 running bdist_wheel 2025-09-08T07:39:15,110 running build 2025-09-08T07:39:15,111 running build_py 2025-09-08T07:39:15,187 creating build/lib.linux-armv7l-cpython-313/arv 2025-09-08T07:39:15,188 copying python/arv/util.py -> build/lib.linux-armv7l-cpython-313/arv 2025-09-08T07:39:15,188 copying python/arv/traits.py -> build/lib.linux-armv7l-cpython-313/arv 2025-09-08T07:39:15,189 copying python/arv/match.py -> build/lib.linux-armv7l-cpython-313/arv 2025-09-08T07:39:15,190 copying python/arv/__init__.py -> build/lib.linux-armv7l-cpython-313/arv 2025-09-08T07:39:15,191 running build_ext 2025-09-08T07:39:15,191 Configuring Google hash map 2025-09-08T07:39:15,602 checking for a BSD-compatible install... /usr/bin/install -c 2025-09-08T07:39:16,633 checking whether build environment is sane... yes 2025-09-08T07:39:16,662 checking for a thread-safe mkdir -p... /usr/bin/mkdir -p 2025-09-08T07:39:16,663 checking for gawk... gawk 2025-09-08T07:39:16,696 checking whether make sets $(MAKE)... yes 2025-09-08T07:39:16,731 checking for g++... g++ 2025-09-08T07:39:17,070 checking whether the C++ compiler works... yes 2025-09-08T07:39:17,070 checking for C++ compiler default output file name... a.out 2025-09-08T07:39:17,291 checking for suffix of executables... 2025-09-08T07:39:17,554 checking whether we are cross compiling... no 2025-09-08T07:39:17,644 checking for suffix of object files... o 2025-09-08T07:39:17,733 checking whether we are using the GNU C++ compiler... yes 2025-09-08T07:39:17,817 checking whether g++ accepts -g... yes 2025-09-08T07:39:17,834 checking for style of include used by make... GNU 2025-09-08T07:39:18,012 checking dependency style of g++... gcc3 2025-09-08T07:39:18,014 checking for gcc... gcc 2025-09-08T07:39:18,198 checking whether we are using the GNU C compiler... yes 2025-09-08T07:39:18,276 checking whether gcc accepts -g... yes 2025-09-08T07:39:18,420 checking for gcc option to accept ISO C89... none needed 2025-09-08T07:39:18,590 checking dependency style of gcc... gcc3 2025-09-08T07:39:18,708 checking how to run the C preprocessor... gcc -E 2025-09-08T07:39:18,840 checking for grep that handles long lines and -e... /usr/bin/grep 2025-09-08T07:39:18,849 checking for egrep... /usr/bin/grep -E 2025-09-08T07:39:19,352 checking for ANSI C header files... yes 2025-09-08T07:39:19,571 checking for memcpy... yes 2025-09-08T07:39:19,806 checking for memmove... yes 2025-09-08T07:39:19,952 checking for sys/types.h... yes 2025-09-08T07:39:20,100 checking for sys/stat.h... yes 2025-09-08T07:39:20,246 checking for stdlib.h... yes 2025-09-08T07:39:20,400 checking for string.h... yes 2025-09-08T07:39:20,557 checking for memory.h... yes 2025-09-08T07:39:20,710 checking for strings.h... yes 2025-09-08T07:39:20,868 checking for inttypes.h... yes 2025-09-08T07:39:21,026 checking for stdint.h... yes 2025-09-08T07:39:21,195 checking for unistd.h... yes 2025-09-08T07:39:21,512 checking for uint16_t... yes 2025-09-08T07:39:21,816 checking for u_int16_t... yes 2025-09-08T07:39:21,982 checking for __uint16... no 2025-09-08T07:39:22,287 checking for long long... yes 2025-09-08T07:39:22,446 checking sys/resource.h usability... yes 2025-09-08T07:39:22,503 checking sys/resource.h presence... yes 2025-09-08T07:39:22,503 checking for sys/resource.h... yes 2025-09-08T07:39:22,527 checking for unistd.h... (cached) yes 2025-09-08T07:39:22,699 checking sys/time.h usability... yes 2025-09-08T07:39:22,751 checking sys/time.h presence... yes 2025-09-08T07:39:22,751 checking for sys/time.h... yes 2025-09-08T07:39:22,916 checking sys/utsname.h usability... yes 2025-09-08T07:39:22,968 checking sys/utsname.h presence... yes 2025-09-08T07:39:22,968 checking for sys/utsname.h... yes 2025-09-08T07:39:23,114 checking how to run the C++ preprocessor... g++ -E 2025-09-08T07:39:23,410 checking google/malloc_extension.h usability... no 2025-09-08T07:39:23,482 checking google/malloc_extension.h presence... no 2025-09-08T07:39:23,482 checking for google/malloc_extension.h... no 2025-09-08T07:39:23,578 checking whether the compiler implements namespaces... yes 2025-09-08T07:39:24,458 checking the location of hash_map... 2025-09-08T07:39:25,312 checking how to include hash_fun directly... 2025-09-08T07:39:25,407 configure: creating ./config.status 2025-09-08T07:39:25,792 config.status: creating Makefile 2025-09-08T07:39:25,851 config.status: creating src/config.h 2025-09-08T07:39:25,923 config.status: executing depfiles commands 2025-09-08T07:39:26,043 building '_arv' extension 2025-09-08T07:39:26,046 creating build/temp.linux-armv7l-cpython-313/cpp 2025-09-08T07:39:26,047 creating build/temp.linux-armv7l-cpython-313/cython 2025-09-08T07:39:26,047 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/dnatraits.cpp -o build/temp.linux-armv7l-cpython-313/cpp/dnatraits.o -std=c++11 -g0 2025-09-08T07:39:27,283 cpp/dnatraits.cpp: In member function ‘std::vector Genome::intersect_rsid(const Genome&) const’: 2025-09-08T07:39:27,283 cpp/dnatraits.cpp:356:20: warning: loop variable ‘i’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 2025-09-08T07:39:27,283 356 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:27,284 | ^ 2025-09-08T07:39:27,284 cpp/dnatraits.cpp:356:20: note: use reference type to prevent copying 2025-09-08T07:39:27,284 356 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:27,284 | ^ 2025-09-08T07:39:27,284 | & 2025-09-08T07:39:27,286 cpp/dnatraits.cpp: In member function ‘std::vector Genome::intersect_snp(const Genome&) const’: 2025-09-08T07:39:27,286 cpp/dnatraits.cpp:367:20: warning: loop variable ‘i’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 2025-09-08T07:39:27,286 367 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:27,286 | ^ 2025-09-08T07:39:27,287 cpp/dnatraits.cpp:367:20: note: use reference type to prevent copying 2025-09-08T07:39:27,287 367 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:27,287 | ^ 2025-09-08T07:39:27,287 | & 2025-09-08T07:39:27,288 cpp/dnatraits.cpp: In member function ‘std::vector Genome::rsids() const’: 2025-09-08T07:39:27,289 cpp/dnatraits.cpp:380:20: warning: loop variable ‘i’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 2025-09-08T07:39:27,289 380 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:27,289 | ^ 2025-09-08T07:39:27,289 cpp/dnatraits.cpp:380:20: note: use reference type to prevent copying 2025-09-08T07:39:27,289 380 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:27,289 | ^ 2025-09-08T07:39:27,289 | & 2025-09-08T07:39:27,297 cpp/dnatraits.cpp: In member function ‘std::vector Genome::snps() const’: 2025-09-08T07:39:27,297 cpp/dnatraits.cpp:391:20: warning: loop variable ‘i’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 2025-09-08T07:39:27,297 391 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:27,297 | ^ 2025-09-08T07:39:27,298 cpp/dnatraits.cpp:391:20: note: use reference type to prevent copying 2025-09-08T07:39:27,298 391 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:27,298 | ^ 2025-09-08T07:39:27,298 | & 2025-09-08T07:39:27,468 In file included from cpp/sparsehash/internal/densehashtable.h:101, 2025-09-08T07:39:27,469 from cpp/sparsehash/dense_hash_map:104, 2025-09-08T07:39:27,469 from cpp/google/dense_hash_map:34, 2025-09-08T07:39:27,469 from cpp/dnatraits.cpp:6: 2025-09-08T07:39:27,469 cpp/sparsehash/internal/libc_allocator_with_realloc.h: In instantiation of ‘T* google::libc_allocator_with_realloc::reallocate(pointer, size_type) [with T = std::pair; pointer = std::pair*; size_type = unsigned int]’: 2025-09-08T07:39:27,469 cpp/sparsehash/internal/densehashtable.h:1202:40: required from ‘google::dense_hashtable::alloc_impl >::pointer google::dense_hashtable::alloc_impl >::realloc_or_die(pointer, size_type) [with A = std::pair; Value = std::pair; Key = unsigned int; HashFcn = {anonymous}::RSIDHash; ExtractKey = google::dense_hash_map::SelectKey; SetKey = google::dense_hash_map::SetKey; EqualKey = {anonymous}::RSIDEq; Alloc = google::libc_allocator_with_realloc >; pointer = std::pair*; size_type = unsigned int]’ 2025-09-08T07:39:27,469 1202 | pointer retval = this->reallocate(ptr, n); 2025-09-08T07:39:27,469 | ~~~~~~~~~~~~~~~~^~~~~~~~ 2025-09-08T07:39:27,470 cpp/sparsehash/internal/densehashtable.h:628:36: required from ‘void google::dense_hashtable::resize_table(size_type, size_type, google::true_type) [with Value = std::pair; Key = unsigned int; HashFcn = {anonymous}::RSIDHash; ExtractKey = google::dense_hash_map::SelectKey; SetKey = google::dense_hash_map::SetKey; EqualKey = {anonymous}::RSIDEq; Alloc = google::libc_allocator_with_realloc >; size_type = unsigned int; google::true_type = google::integral_constant]’ 2025-09-08T07:39:27,470 628 | table = val_info.realloc_or_die(table, new_size); 2025-09-08T07:39:27,470 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-09-08T07:39:27,470 cpp/sparsehash/internal/densehashtable.h:785:21: required from ‘void google::dense_hashtable::clear_to_size(size_type) [with Value = std::pair; Key = unsigned int; HashFcn = {anonymous}::RSIDHash; ExtractKey = google::dense_hash_map::SelectKey; SetKey = google::dense_hash_map::SetKey; EqualKey = {anonymous}::RSIDEq; Alloc = google::libc_allocator_with_realloc >; size_type = unsigned int]’ 2025-09-08T07:39:27,470 785 | resize_table(num_buckets, new_num_buckets, realloc_ok()); 2025-09-08T07:39:27,470 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T07:39:27,470 cpp/sparsehash/internal/densehashtable.h:638:5: required from ‘void google::dense_hashtable::copy_from(const google::dense_hashtable&, size_type) [with Value = std::pair; Key = unsigned int; HashFcn = {anonymous}::RSIDHash; ExtractKey = google::dense_hash_map::SelectKey; SetKey = google::dense_hash_map::SetKey; EqualKey = {anonymous}::RSIDEq; Alloc = google::libc_allocator_with_realloc >; size_type = unsigned int]’ 2025-09-08T07:39:27,470 638 | clear_to_size(settings.min_buckets(ht.size(), min_buckets_wanted)); 2025-09-08T07:39:27,470 | ^~~~~~~~~~~~~ 2025-09-08T07:39:27,471 cpp/sparsehash/internal/densehashtable.h:729:5: required from ‘google::dense_hashtable::dense_hashtable(const google::dense_hashtable&, size_type) [with Value = std::pair; Key = unsigned int; HashFcn = {anonymous}::RSIDHash; ExtractKey = google::dense_hash_map::SelectKey; SetKey = google::dense_hash_map::SetKey; EqualKey = {anonymous}::RSIDEq; Alloc = google::libc_allocator_with_realloc >; size_type = unsigned int]’ 2025-09-08T07:39:27,471 729 | copy_from(ht, min_buckets_wanted); // copy_from() ignores deleted entries 2025-09-08T07:39:27,471 | ^~~~~~~~~ 2025-09-08T07:39:27,471 cpp/sparsehash/dense_hash_map:113:7: required from here 2025-09-08T07:39:27,471 113 | class dense_hash_map { 2025-09-08T07:39:27,471 | ^~~~~~~~~~~~~~ 2025-09-08T07:39:27,471 cpp/sparsehash/internal/libc_allocator_with_realloc.h:68:40: warning: ‘void* realloc(void*, size_t)’ moving an object of non-trivially copyable type ‘struct std::pair’; use ‘new’ and ‘delete’ instead [-Wclass-memaccess] 2025-09-08T07:39:27,471 68 | return static_cast(realloc(p, n * sizeof(value_type))); 2025-09-08T07:39:27,471 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T07:39:27,472 In file included from /usr/include/c++/14/bits/stl_algobase.h:64, 2025-09-08T07:39:27,472 from /usr/include/c++/14/algorithm:60, 2025-09-08T07:39:27,472 from cpp/sparsehash/dense_hash_map:100: 2025-09-08T07:39:27,472 /usr/include/c++/14/bits/stl_pair.h:284:12: note: ‘struct std::pair’ declared here 2025-09-08T07:39:27,472 284 | struct pair 2025-09-08T07:39:27,472 | ^~~~ 2025-09-08T07:39:29,254 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/file.cpp -o build/temp.linux-armv7l-cpython-313/cpp/file.o -std=c++11 -g0 2025-09-08T07:39:29,953 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/fileptr.cpp -o build/temp.linux-armv7l-cpython-313/cpp/fileptr.o -std=c++11 -g0 2025-09-08T07:39:30,633 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/filesize.cpp -o build/temp.linux-armv7l-cpython-313/cpp/filesize.o -std=c++11 -g0 2025-09-08T07:39:31,253 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/mmap.cpp -o build/temp.linux-armv7l-cpython-313/cpp/mmap.o -std=c++11 -g0 2025-09-08T07:39:31,876 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/parse_file.cpp -o build/temp.linux-armv7l-cpython-313/cpp/parse_file.o -std=c++11 -g0 2025-09-08T07:39:32,761 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cython/_arv.cpp -o build/temp.linux-armv7l-cpython-313/cython/_arv.o -std=c++11 -g0 2025-09-08T07:39:34,100 cython/_arv.cpp:1557:8: warning: alignment 1 of ‘__pyx_obj_4_arv_PyGenotype’ is less than 4 [-Wpacked-not-aligned] 2025-09-08T07:39:34,101 1557 | struct __pyx_obj_4_arv_PyGenotype { 2025-09-08T07:39:34,101 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T07:39:34,101 cython/_arv.cpp:1570:8: warning: alignment 1 of ‘__pyx_obj_4_arv_PySNP’ is less than 4 [-Wpacked-not-aligned] 2025-09-08T07:39:34,101 1570 | struct __pyx_obj_4_arv_PySNP { 2025-09-08T07:39:34,101 | ^~~~~~~~~~~~~~~~~~~~~ 2025-09-08T07:39:34,101 cython/_arv.cpp:1583:8: warning: alignment 1 of ‘__pyx_obj_4_arv_PyGenome’ is less than 4 [-Wpacked-not-aligned] 2025-09-08T07:39:34,101 1583 | struct __pyx_obj_4_arv_PyGenome { 2025-09-08T07:39:34,101 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T07:39:34,385 In file included from /usr/include/python3.13/frameobject.h:13, 2025-09-08T07:39:34,385 from cython/_arv.cpp:11554: 2025-09-08T07:39:34,385 /usr/include/python3.13/cpython/frameobject.h:32:16: warning: alignment 1 of ‘’ is less than 4 [-Wpacked-not-aligned] 2025-09-08T07:39:34,385 32 | typedef struct { 2025-09-08T07:39:34,385 | ^ 2025-09-08T07:39:34,397 In file included from cython/_arv.cpp:11560: 2025-09-08T07:39:34,397 /usr/include/python3.13/internal/pycore_frame.h:20:8: warning: alignment 1 of ‘_frame’ is less than 4 [-Wpacked-not-aligned] 2025-09-08T07:39:34,397 20 | struct _frame { 2025-09-08T07:39:34,398 | ^~~~~~ 2025-09-08T07:39:39,801 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/cpp/dnatraits.o build/temp.linux-armv7l-cpython-313/cpp/file.o build/temp.linux-armv7l-cpython-313/cpp/fileptr.o build/temp.linux-armv7l-cpython-313/cpp/filesize.o build/temp.linux-armv7l-cpython-313/cpp/mmap.o build/temp.linux-armv7l-cpython-313/cpp/parse_file.o build/temp.linux-armv7l-cpython-313/cython/_arv.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/_arv.cpython-313-arm-linux-gnueabihf.so 2025-09-08T07:39:40,159 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-08T07:39:40,159 !! 2025-09-08T07:39:40,160 ******************************************************************************** 2025-09-08T07:39:40,160 Please avoid running ``setup.py`` directly. 2025-09-08T07:39:40,160 Instead, use pypa/build, pypa/installer or other 2025-09-08T07:39:40,160 standards-based tools. 2025-09-08T07:39:40,160 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T07:39:40,160 or your builds will no longer be supported. 2025-09-08T07:39:40,160 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-08T07:39:40,160 ******************************************************************************** 2025-09-08T07:39:40,161 !! 2025-09-08T07:39:40,161 self.initialize_options() 2025-09-08T07:39:40,234 installing to build/bdist.linux-armv7l/wheel 2025-09-08T07:39:40,234 running install 2025-09-08T07:39:40,257 running install_lib 2025-09-08T07:39:40,331 creating build/bdist.linux-armv7l/wheel 2025-09-08T07:39:40,331 copying build/lib.linux-armv7l-cpython-313/_arv.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-09-08T07:39:40,333 creating build/bdist.linux-armv7l/wheel/arv 2025-09-08T07:39:40,333 copying build/lib.linux-armv7l-cpython-313/arv/__init__.py -> build/bdist.linux-armv7l/wheel/./arv 2025-09-08T07:39:40,334 copying build/lib.linux-armv7l-cpython-313/arv/match.py -> build/bdist.linux-armv7l/wheel/./arv 2025-09-08T07:39:40,335 copying build/lib.linux-armv7l-cpython-313/arv/traits.py -> build/bdist.linux-armv7l/wheel/./arv 2025-09-08T07:39:40,335 copying build/lib.linux-armv7l-cpython-313/arv/util.py -> build/bdist.linux-armv7l/wheel/./arv 2025-09-08T07:39:40,336 running install_egg_info 2025-09-08T07:39:40,410 running egg_info 2025-09-08T07:39:40,483 writing arv.egg-info/PKG-INFO 2025-09-08T07:39:40,485 writing dependency_links to arv.egg-info/dependency_links.txt 2025-09-08T07:39:40,486 writing requirements to arv.egg-info/requires.txt 2025-09-08T07:39:40,486 writing top-level names to arv.egg-info/top_level.txt 2025-09-08T07:39:40,562 reading manifest file 'arv.egg-info/SOURCES.txt' 2025-09-08T07:39:40,567 reading manifest template 'MANIFEST.in' 2025-09-08T07:39:40,571 adding license file 'LICENSES' 2025-09-08T07:39:40,571 adding license file 'COPYING' 2025-09-08T07:39:40,576 writing manifest file 'arv.egg-info/SOURCES.txt' 2025-09-08T07:39:40,577 Copying arv.egg-info to build/bdist.linux-armv7l/wheel/./arv-0.1-py3.13.egg-info 2025-09-08T07:39:40,579 running install_scripts 2025-09-08T07:39:40,628 creating build/bdist.linux-armv7l/wheel/arv-0.1.dist-info/WHEEL 2025-09-08T07:39:40,629 creating '/tmp/pip-wheel-m9oe16gy/arv-0.1-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-08T07:39:40,652 adding '_arv.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T07:39:40,654 adding 'arv/__init__.py' 2025-09-08T07:39:40,655 adding 'arv/match.py' 2025-09-08T07:39:40,657 adding 'arv/traits.py' 2025-09-08T07:39:40,658 adding 'arv/util.py' 2025-09-08T07:39:40,664 adding 'arv-0.1.dist-info/licenses/COPYING' 2025-09-08T07:39:40,669 adding 'arv-0.1.dist-info/licenses/LICENSES' 2025-09-08T07:39:40,670 adding 'arv-0.1.dist-info/METADATA' 2025-09-08T07:39:40,671 adding 'arv-0.1.dist-info/WHEEL' 2025-09-08T07:39:40,672 adding 'arv-0.1.dist-info/top_level.txt' 2025-09-08T07:39:40,672 adding 'arv-0.1.dist-info/RECORD' 2025-09-08T07:39:40,673 removing build/bdist.linux-armv7l/wheel 2025-09-08T07:39:40,828 Building wheel for arv (setup.py): finished with status 'done' 2025-09-08T07:39:40,830 Created wheel for arv: filename=arv-0.1-cp313-cp313-linux_armv7l.whl size=82308 sha256=7cd084ba00c91acd150f76d50bb3a4bbd7b0e599d67eb43a495c07b2e4b707f4 2025-09-08T07:39:40,831 Stored in directory: /tmp/pip-ephem-wheel-cache-phq8o951/wheels/49/50/5b/15c4b02e4c714dec1dac03f4bb44f232d05e54d07e82dc4e3f 2025-09-08T07:39:40,840 Successfully built arv 2025-09-08T07:39:40,841 Removed build tracker: '/tmp/pip-build-tracker-t92zdim4'