2025-09-08T07:39:17,475 Created temporary directory: /tmp/pip-build-tracker-5or83coe 2025-09-08T07:39:17,476 Initialized build tracking at /tmp/pip-build-tracker-5or83coe 2025-09-08T07:39:17,476 Created build tracker: /tmp/pip-build-tracker-5or83coe 2025-09-08T07:39:17,476 Entered build tracker: /tmp/pip-build-tracker-5or83coe 2025-09-08T07:39:17,476 Created temporary directory: /tmp/pip-wheel-fop2vyw8 2025-09-08T07:39:17,479 Created temporary directory: /tmp/pip-ephem-wheel-cache-x3pirimy 2025-09-08T07:39:17,540 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T07:39:17,542 2 location(s) to search for versions of arv: 2025-09-08T07:39:17,542 * https://pypi.org/simple/arv/ 2025-09-08T07:39:17,542 * https://www.piwheels.org/simple/arv/ 2025-09-08T07:39:17,543 Fetching project page and analyzing links: https://pypi.org/simple/arv/ 2025-09-08T07:39:17,543 Getting page https://pypi.org/simple/arv/ 2025-09-08T07:39:17,544 Found index url https://pypi.org/simple/ 2025-09-08T07:39:17,615 Fetched page https://pypi.org/simple/arv/ as application/vnd.pypi.simple.v1+json 2025-09-08T07:39:17,618 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/79/cb/d0a432e6bee84946f2a99c6e1c18757519d9a29a8a93e5cec5a4c6ec0b13/arv-0.1-cp27-cp27m-macosx_10_12_x86_64.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,619 Found link https://files.pythonhosted.org/packages/28/bf/8f39399e129e77e88084cd6553ed5b02132404fa5aa7953ec357cd53824c/arv-0.1.tar.gz (from https://pypi.org/simple/arv/), version: 0.1 2025-09-08T07:39:17,619 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/d1/d1/be5f1eb8ad00dbf7128d7c698fe2c3d3aac06329d6d2564fa33fac4d81cb/arv-0.2-cp27-cp27m-macosx_10_12_x86_64.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,619 Found link https://files.pythonhosted.org/packages/c1/48/5c084fc21937e4cde5752d10c4b4e123e6a24df37c4acf8cce4dabf00258/arv-0.2.tar.gz (from https://pypi.org/simple/arv/), version: 0.2 2025-09-08T07:39:17,619 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/85/fc/ef4dda5805f022dd0766af26ebb943a8671283f3e5ce1119dff6d45200c0/arv-0.3-cp27-cp27m-macosx_10_12_x86_64.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,620 Found link https://files.pythonhosted.org/packages/d2/f2/c62af9993167d6dcea891d55f368f70455ec0bb99137ee3cb1e144cd50e4/arv-0.3.tar.gz (from https://pypi.org/simple/arv/), version: 0.3 2025-09-08T07:39:17,620 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/82/41/a607266511cfc54d7c07527c81d2a0730b07af7eab1d93accb5ca993f08c/arv-0.4-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,620 Found link https://files.pythonhosted.org/packages/e0/ed/4f466615e32e971598cf6cceefaf01c8b3b65c50c3e1fbc2481dde289ac8/arv-0.4.tar.gz (from https://pypi.org/simple/arv/), version: 0.4 2025-09-08T07:39:17,620 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/65/0e/997a9d6bc4eaa38b1bf96da00e4907d04fefc3ce74e8664ed6cbe90d3697/arv-0.5-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,620 Found link https://files.pythonhosted.org/packages/37/da/f94035a93931c4826d92cb348d6c8267186e2f5e1a12843a7ab25afe2c47/arv-0.5.tar.gz (from https://pypi.org/simple/arv/), version: 0.5 2025-09-08T07:39:17,621 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/8b/3c/411121f0b0b76e07dc693603a3c270b3608ee4d30813fefd1c3d7e809cf2/arv-0.6-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,621 Found link https://files.pythonhosted.org/packages/b3/85/ab31b736c04773e7ce875239145aaabc24de00de512baf674c6f6b5a12e9/arv-0.6.tar.gz (from https://pypi.org/simple/arv/), version: 0.6 2025-09-08T07:39:17,621 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/54/f8/f43e9bb124f4862e39d7510a1456a57e9cb8be843a99effd466a5ee9287c/arv-0.7-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,621 Found link https://files.pythonhosted.org/packages/cf/48/021558e12082f4fc32ab980a52b569719d440167866aa0ded82c3714bcc1/arv-0.7.tar.gz (from https://pypi.org/simple/arv/), version: 0.7 2025-09-08T07:39:17,622 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/a9/5b/efef04f913f5de9c7d612f80e702b03982dba0c38c665fa237247aaf5e18/arv-0.8-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,622 Found link https://files.pythonhosted.org/packages/89/13/53bc0c6ed04333128a2a85f910fed8a0e65505fb89d181ff41571161c452/arv-0.8.tar.gz (from https://pypi.org/simple/arv/), version: 0.8 2025-09-08T07:39:17,622 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/d9/4a/0f9909c577bb6d493ad082a187bc37820385cf0f4b94ae745d54dc5f1604/arv-0.9-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,622 Found link https://files.pythonhosted.org/packages/ce/90/aa9cb9012bf7fc3671ccad13625521ddd73e53b355ab216c5e1ad40eaa9c/arv-0.9.tar.gz (from https://pypi.org/simple/arv/), version: 0.9 2025-09-08T07:39:17,622 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/98/5c/34d34db646d1caf1f55deadb4b8784dc1ed21e46f20870648eec5a0491de/arv-0.9.1-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,623 Found link https://files.pythonhosted.org/packages/d5/19/75a16aade4d435627c8bfa78193eb14bdfe7c8aec3529de79a762c8f48cf/arv-0.9.1.tar.gz (from https://pypi.org/simple/arv/), version: 0.9.1 2025-09-08T07:39:17,623 Skipping link: No binaries permitted for arv: https://files.pythonhosted.org/packages/bc/09/e5e0750e2c608003861780d4807726937bdfca6bc5ab1ea04532cbef8dd8/arv-0.9.2-cp27-none-macosx_10_12_intel.whl (from https://pypi.org/simple/arv/) 2025-09-08T07:39:17,623 Found link https://files.pythonhosted.org/packages/c2/6a/7198d7adcb9e5f90080c5f2e0bd9dced045f174dd809267b626278995b67/arv-0.9.2.tar.gz (from https://pypi.org/simple/arv/), version: 0.9.2 2025-09-08T07:39:17,623 Fetching project page and analyzing links: https://www.piwheels.org/simple/arv/ 2025-09-08T07:39:17,624 Getting page https://www.piwheels.org/simple/arv/ 2025-09-08T07:39:17,625 Found index url https://www.piwheels.org/simple/ 2025-09-08T07:39:17,724 Fetched page https://www.piwheels.org/simple/arv/ as text/html 2025-09-08T07:39:17,739 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp35-cp35m-linux_armv6l.whl#sha256=a24895e558489efda5a61b13aaecd16af69c08ffdbf26e8d7a39ccf2c7d40541 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,739 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp35-cp35m-linux_armv7l.whl#sha256=a24895e558489efda5a61b13aaecd16af69c08ffdbf26e8d7a39ccf2c7d40541 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,739 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=d0ee8df526e60b6bdabba3f4f38af4cbe1adb3f28a2ef80a290016e65e706d74 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,739 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=d0ee8df526e60b6bdabba3f4f38af4cbe1adb3f28a2ef80a290016e65e706d74 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,740 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp311-cp311-linux_armv6l.whl#sha256=5036e76356d6dd19ee9a70949f815513655c35ce10d084e55aafd9aef1bf38bb (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,740 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp311-cp311-linux_armv7l.whl#sha256=5036e76356d6dd19ee9a70949f815513655c35ce10d084e55aafd9aef1bf38bb (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,740 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=adf8e774be41795eeec23c94e27a2400ff7b67118852ebaa6ad9a15fa8641b99 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,740 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=adf8e774be41795eeec23c94e27a2400ff7b67118852ebaa6ad9a15fa8641b99 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,740 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=0d6833aba5ff30e677a9a8c21adba718e44bbfd862526b7f0683a945de635780 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,740 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=0d6833aba5ff30e677a9a8c21adba718e44bbfd862526b7f0683a945de635780 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,741 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp311-cp311-linux_armv6l.whl#sha256=7ee74417ae07ea443f2de3f58942961e03143f23ff27af3c2c76f355d0b9b3e0 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,741 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp311-cp311-linux_armv7l.whl#sha256=7ee74417ae07ea443f2de3f58942961e03143f23ff27af3c2c76f355d0b9b3e0 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,741 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=105d1300f98aa54a88b69ffbc03363a4277f3a89f476bfb0072225ee50f1b4b3 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,741 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=105d1300f98aa54a88b69ffbc03363a4277f3a89f476bfb0072225ee50f1b4b3 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,741 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp37-cp37m-linux_armv7l.whl#sha256=72a379616b58ad8aaa06f91a8abf0f3335a4a9eae4bd34400dde6e8e49a9d187 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,741 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp37-cp37m-linux_armv6l.whl#sha256=72a379616b58ad8aaa06f91a8abf0f3335a4a9eae4bd34400dde6e8e49a9d187 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,742 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp311-cp311-linux_armv6l.whl#sha256=b285a3265bf2cb193c3add90e60d2362a5cd5157ecc6e16353ccd8358043197f (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,742 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp311-cp311-linux_armv7l.whl#sha256=b285a3265bf2cb193c3add90e60d2362a5cd5157ecc6e16353ccd8358043197f (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,742 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp39-cp39-linux_armv6l.whl#sha256=06892e40bbbd8980196eeb6994d5771016079e51a028b6ebf02d4ce449b99259 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,742 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.9-cp39-cp39-linux_armv7l.whl#sha256=06892e40bbbd8980196eeb6994d5771016079e51a028b6ebf02d4ce449b99259 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,742 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp37-cp37m-linux_armv7l.whl#sha256=74186641368e50cd4a468a71f3867d92e5cf2123cd4ed79f02af1e09444e0258 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,742 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp37-cp37m-linux_armv6l.whl#sha256=74186641368e50cd4a468a71f3867d92e5cf2123cd4ed79f02af1e09444e0258 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,742 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp311-cp311-linux_armv6l.whl#sha256=7d649565df1243d02f265e6a02a8d1abf2110f360cdd718b36180b7de99ec3d1 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,743 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp311-cp311-linux_armv7l.whl#sha256=7d649565df1243d02f265e6a02a8d1abf2110f360cdd718b36180b7de99ec3d1 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,743 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp39-cp39-linux_armv6l.whl#sha256=8896fac7efbec3937d1420d90065fb34476f71b4ecf552cf99c7f56ca85a01a5 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,743 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.8-cp39-cp39-linux_armv7l.whl#sha256=8896fac7efbec3937d1420d90065fb34476f71b4ecf552cf99c7f56ca85a01a5 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,743 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp37-cp37m-linux_armv7l.whl#sha256=a99b9668bef0851e128c0f2be3c8d5c60b75035ba6e22e162296b8e5f2348d95 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,743 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp37-cp37m-linux_armv6l.whl#sha256=a99b9668bef0851e128c0f2be3c8d5c60b75035ba6e22e162296b8e5f2348d95 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,743 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp311-cp311-linux_armv6l.whl#sha256=555befcce07c962d4d462dba66cf805af2c6e87aab8f92497fbbd96255d9cbfc (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,743 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp311-cp311-linux_armv7l.whl#sha256=555befcce07c962d4d462dba66cf805af2c6e87aab8f92497fbbd96255d9cbfc (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,744 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp39-cp39-linux_armv6l.whl#sha256=eb8d0f38eb751d643b047f70021d61e5b392734aca3f9d666c9279e03af9b6f3 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,744 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.7-cp39-cp39-linux_armv7l.whl#sha256=eb8d0f38eb751d643b047f70021d61e5b392734aca3f9d666c9279e03af9b6f3 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,744 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp37-cp37m-linux_armv6l.whl#sha256=68d879e001d7c325a3267be5377b6b8ed41120954a1364d80f9c3ba9c1b93185 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,744 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp37-cp37m-linux_armv7l.whl#sha256=68d879e001d7c325a3267be5377b6b8ed41120954a1364d80f9c3ba9c1b93185 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,744 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp311-cp311-linux_armv6l.whl#sha256=0b5884947dbfc6cbb1a210f82dbb35aeb59735df6ba8af6e681d2de9642554f9 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,744 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp311-cp311-linux_armv7l.whl#sha256=0b5884947dbfc6cbb1a210f82dbb35aeb59735df6ba8af6e681d2de9642554f9 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,744 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp39-cp39-linux_armv6l.whl#sha256=2a9b6e3dfd453df4ee8d77b6336a6b5d34626efebb992693d0cda67ee75d7af5 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,745 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.6-cp39-cp39-linux_armv7l.whl#sha256=2a9b6e3dfd453df4ee8d77b6336a6b5d34626efebb992693d0cda67ee75d7af5 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,745 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp37-cp37m-linux_armv6l.whl#sha256=0ca9beb6f78a17005d93ce486e61029f268d8650f8b8f4464257b0ae5e878a15 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,745 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp37-cp37m-linux_armv7l.whl#sha256=0ca9beb6f78a17005d93ce486e61029f268d8650f8b8f4464257b0ae5e878a15 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,745 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp311-cp311-linux_armv6l.whl#sha256=bc85aaf91f3f69f00676145e8f52664debcb5a9859d4be9fc78d33ec9425fb8c (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,745 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp311-cp311-linux_armv7l.whl#sha256=bc85aaf91f3f69f00676145e8f52664debcb5a9859d4be9fc78d33ec9425fb8c (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,745 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp39-cp39-linux_armv6l.whl#sha256=d2f75fec05ec23bd8e25288c9830e9c2aecf0b35d67b7b86f43dbfb1719300fb (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,745 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.5-cp39-cp39-linux_armv7l.whl#sha256=d2f75fec05ec23bd8e25288c9830e9c2aecf0b35d67b7b86f43dbfb1719300fb (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,746 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.4-cp37-cp37m-linux_armv6l.whl#sha256=141923acb2e6641363b21f3c9685cddd318ac5fb76c58f223bee3a6b46561f39 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,746 Skipping link: No binaries permitted for arv: 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2025-09-08T07:39:17,746 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.4-cp39-cp39-linux_armv7l.whl#sha256=d5be234acfe7f413faa5835069537e22a95f0d0ee0b3ed4a6d6feb7996c4382b (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,746 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp37-cp37m-linux_armv7l.whl#sha256=26d52aed9484311d55e447d5265b27c14802d31a69da9cf2d45d260f26fa46b4 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,747 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp37-cp37m-linux_armv6l.whl#sha256=26d52aed9484311d55e447d5265b27c14802d31a69da9cf2d45d260f26fa46b4 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,747 Skipping link: No binaries permitted for arv: 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2025-09-08T07:39:17,747 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp311-cp311-linux_armv6l.whl#sha256=43f5f556e075925e8ebe35433ed64cb69612146e06d1c3b430a3616ee1d09ff2 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,747 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp311-cp311-linux_armv7l.whl#sha256=43f5f556e075925e8ebe35433ed64cb69612146e06d1c3b430a3616ee1d09ff2 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,748 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.3-cp39-cp39-linux_armv6l.whl#sha256=8f859eac2396718ed5f6e0336e95a72045992d4c223d813785f261f091b8976a (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,748 Skipping link: No binaries permitted for arv: 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2025-09-08T07:39:17,748 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp34-cp34m-linux_armv7l.whl#sha256=789daee9c9460bc948cea4b7ad67ba14852fcdcaf1f7cc05a9caff5f29fc4989 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,748 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp311-cp311-linux_armv6l.whl#sha256=2ce238af44b2309bde8b459b63daa82a37f25d8ce7265e3aee3cca32094748ff (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,749 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp311-cp311-linux_armv7l.whl#sha256=2ce238af44b2309bde8b459b63daa82a37f25d8ce7265e3aee3cca32094748ff (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,749 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp39-cp39-linux_armv6l.whl#sha256=9b9408653ffa6f3ba6c61256d3d98526c8d9756977eb58c0eb366ae4bd7415e0 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,749 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.2-cp39-cp39-linux_armv7l.whl#sha256=9b9408653ffa6f3ba6c61256d3d98526c8d9756977eb58c0eb366ae4bd7415e0 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,749 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp37-cp37m-linux_armv6l.whl#sha256=b906f1682915f558a932ed3bbab253c11a07047eb01d3b95a252b56acc73926a (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,749 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp37-cp37m-linux_armv7l.whl#sha256=b906f1682915f558a932ed3bbab253c11a07047eb01d3b95a252b56acc73926a (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,749 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp34-cp34m-linux_armv6l.whl#sha256=818280bc9e151b2f4dd56750d68986dcbba9e05e88ec7960f04d9e4f8dfedb34 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,750 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp34-cp34m-linux_armv7l.whl#sha256=818280bc9e151b2f4dd56750d68986dcbba9e05e88ec7960f04d9e4f8dfedb34 (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,750 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp311-cp311-linux_armv6l.whl#sha256=1f4d9551522aeb278013b9a2b1c8aa767daa8eed42df61d10bb85327832b0d6e (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,750 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp311-cp311-linux_armv7l.whl#sha256=1f4d9551522aeb278013b9a2b1c8aa767daa8eed42df61d10bb85327832b0d6e (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,750 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp39-cp39-linux_armv6l.whl#sha256=b6349ffe5bb401ff82b761aa01295847302851a6dc6cbdf4e0290a0a1aebb23c (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,750 Skipping link: No binaries permitted for arv: https://archive1.piwheels.org/simple/arv/arv-0.1-cp39-cp39-linux_armv7l.whl#sha256=b6349ffe5bb401ff82b761aa01295847302851a6dc6cbdf4e0290a0a1aebb23c (from https://www.piwheels.org/simple/arv/) 2025-09-08T07:39:17,750 Skipping link: not a file: https://www.piwheels.org/simple/arv/ 2025-09-08T07:39:17,751 Skipping link: not a file: https://pypi.org/simple/arv/ 2025-09-08T07:39:17,773 Given no hashes to check 1 links for project 'arv': discarding no candidates 2025-09-08T07:39:17,774 Collecting arv==0.3 2025-09-08T07:39:17,775 Created temporary directory: /tmp/pip-unpack-q1i9vanl 2025-09-08T07:39:17,914 Downloading arv-0.3.tar.gz (243 kB) 2025-09-08T07:39:18,023 Added arv==0.3 from https://files.pythonhosted.org/packages/d2/f2/c62af9993167d6dcea891d55f368f70455ec0bb99137ee3cb1e144cd50e4/arv-0.3.tar.gz to build tracker '/tmp/pip-build-tracker-5or83coe' 2025-09-08T07:39:18,024 Running setup.py (path:/tmp/pip-wheel-fop2vyw8/arv_656dd17c8b884c23a94527822725fa30/setup.py) egg_info for package arv 2025-09-08T07:39:18,025 Created temporary directory: /tmp/pip-pip-egg-info-4ptj_1qt 2025-09-08T07:39:18,025 Preparing metadata (setup.py): started 2025-09-08T07:39:18,025 Running command python setup.py egg_info 2025-09-08T07:39:19,044 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T07:39:19,045 !! 2025-09-08T07:39:19,045 ******************************************************************************** 2025-09-08T07:39:19,045 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T07:39:19,045 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T07:39:19,045 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T07:39:19,045 or your builds will no longer be supported. 2025-09-08T07:39:19,045 ******************************************************************************** 2025-09-08T07:39:19,046 !! 2025-09-08T07:39:19,046 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T07:39:19,159 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T07:39:19,159 warnings.warn(msg) 2025-09-08T07:39:19,418 running egg_info 2025-09-08T07:39:19,491 creating /tmp/pip-pip-egg-info-4ptj_1qt/arv.egg-info 2025-09-08T07:39:19,491 writing /tmp/pip-pip-egg-info-4ptj_1qt/arv.egg-info/PKG-INFO 2025-09-08T07:39:19,493 writing dependency_links to /tmp/pip-pip-egg-info-4ptj_1qt/arv.egg-info/dependency_links.txt 2025-09-08T07:39:19,494 writing requirements to /tmp/pip-pip-egg-info-4ptj_1qt/arv.egg-info/requires.txt 2025-09-08T07:39:21,588 Compiling cython/_arv.pyx because it changed. 2025-09-08T07:39:21,588 [1/1] Cythonizing cython/_arv.pyx 2025-09-08T07:39:21,589 writing top-level names to /tmp/pip-pip-egg-info-4ptj_1qt/arv.egg-info/top_level.txt 2025-09-08T07:39:21,590 writing manifest file '/tmp/pip-pip-egg-info-4ptj_1qt/arv.egg-info/SOURCES.txt' 2025-09-08T07:39:21,810 reading manifest file '/tmp/pip-pip-egg-info-4ptj_1qt/arv.egg-info/SOURCES.txt' 2025-09-08T07:39:21,811 reading manifest template 'MANIFEST.in' 2025-09-08T07:39:21,814 warning: no directories found matching 'python' 2025-09-08T07:39:21,815 adding license file 'LICENSES' 2025-09-08T07:39:21,815 adding license file 'COPYING' 2025-09-08T07:39:21,819 writing manifest file '/tmp/pip-pip-egg-info-4ptj_1qt/arv.egg-info/SOURCES.txt' 2025-09-08T07:39:22,152 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T07:39:22,157 Source in /tmp/pip-wheel-fop2vyw8/arv_656dd17c8b884c23a94527822725fa30 has version 0.3, which satisfies requirement arv==0.3 from https://files.pythonhosted.org/packages/d2/f2/c62af9993167d6dcea891d55f368f70455ec0bb99137ee3cb1e144cd50e4/arv-0.3.tar.gz 2025-09-08T07:39:22,157 Removed arv==0.3 from https://files.pythonhosted.org/packages/d2/f2/c62af9993167d6dcea891d55f368f70455ec0bb99137ee3cb1e144cd50e4/arv-0.3.tar.gz from build tracker '/tmp/pip-build-tracker-5or83coe' 2025-09-08T07:39:22,161 Created temporary directory: /tmp/pip-unpack-1n7ni7er 2025-09-08T07:39:22,162 Created temporary directory: /tmp/pip-unpack-yb16_9ag 2025-09-08T07:39:22,162 Building wheels for collected packages: arv 2025-09-08T07:39:22,163 Created temporary directory: /tmp/pip-wheel-3nhp_gb7 2025-09-08T07:39:22,163 DEPRECATION: Building 'arv' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'arv'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T07:39:22,164 Building wheel for arv (setup.py): started 2025-09-08T07:39:22,165 Destination directory: /tmp/pip-wheel-3nhp_gb7 2025-09-08T07:39:22,165 Running command python setup.py bdist_wheel 2025-09-08T07:39:23,145 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T07:39:23,145 !! 2025-09-08T07:39:23,146 ******************************************************************************** 2025-09-08T07:39:23,146 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T07:39:23,146 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T07:39:23,146 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T07:39:23,146 or your builds will no longer be supported. 2025-09-08T07:39:23,146 ******************************************************************************** 2025-09-08T07:39:23,146 !! 2025-09-08T07:39:23,146 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T07:39:23,258 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T07:39:23,258 warnings.warn(msg) 2025-09-08T07:39:23,442 running bdist_wheel 2025-09-08T07:39:24,148 running build 2025-09-08T07:39:24,148 running build_py 2025-09-08T07:39:24,226 creating build/lib.linux-armv7l-cpython-313/arv 2025-09-08T07:39:24,227 copying arv/util.py -> build/lib.linux-armv7l-cpython-313/arv 2025-09-08T07:39:24,228 copying arv/traits.py -> build/lib.linux-armv7l-cpython-313/arv 2025-09-08T07:39:24,229 copying arv/match.py -> build/lib.linux-armv7l-cpython-313/arv 2025-09-08T07:39:24,229 copying arv/__init__.py -> build/lib.linux-armv7l-cpython-313/arv 2025-09-08T07:39:24,231 running build_ext 2025-09-08T07:39:24,231 Configuring Google hash map 2025-09-08T07:39:24,646 checking for a BSD-compatible install... /usr/bin/install -c 2025-09-08T07:39:25,680 checking whether build environment is sane... yes 2025-09-08T07:39:25,710 checking for a thread-safe mkdir -p... /usr/bin/mkdir -p 2025-09-08T07:39:25,711 checking for gawk... gawk 2025-09-08T07:39:25,741 checking whether make sets $(MAKE)... yes 2025-09-08T07:39:25,777 checking for g++... g++ 2025-09-08T07:39:26,121 checking whether the C++ compiler works... yes 2025-09-08T07:39:26,121 checking for C++ compiler default output file name... a.out 2025-09-08T07:39:26,345 checking for suffix of executables... 2025-09-08T07:39:26,602 checking whether we are cross compiling... no 2025-09-08T07:39:26,693 checking for suffix of object files... o 2025-09-08T07:39:26,782 checking whether we are using the GNU C++ compiler... yes 2025-09-08T07:39:26,870 checking whether g++ accepts -g... yes 2025-09-08T07:39:26,889 checking for style of include used by make... GNU 2025-09-08T07:39:27,074 checking dependency style of g++... gcc3 2025-09-08T07:39:27,076 checking for gcc... gcc 2025-09-08T07:39:27,260 checking whether we are using the GNU C compiler... yes 2025-09-08T07:39:27,340 checking whether gcc accepts -g... yes 2025-09-08T07:39:27,489 checking for gcc option to accept ISO C89... none needed 2025-09-08T07:39:27,661 checking dependency style of gcc... gcc3 2025-09-08T07:39:27,779 checking how to run the C preprocessor... gcc -E 2025-09-08T07:39:27,910 checking for grep that handles long lines and -e... /usr/bin/grep 2025-09-08T07:39:27,918 checking for egrep... /usr/bin/grep -E 2025-09-08T07:39:28,414 checking for ANSI C header files... yes 2025-09-08T07:39:28,634 checking for memcpy... yes 2025-09-08T07:39:28,878 checking for memmove... yes 2025-09-08T07:39:29,023 checking for sys/types.h... yes 2025-09-08T07:39:29,175 checking for sys/stat.h... yes 2025-09-08T07:39:29,323 checking for stdlib.h... yes 2025-09-08T07:39:29,478 checking for string.h... yes 2025-09-08T07:39:29,631 checking for memory.h... yes 2025-09-08T07:39:29,790 checking for strings.h... yes 2025-09-08T07:39:29,950 checking for inttypes.h... yes 2025-09-08T07:39:30,105 checking for stdint.h... yes 2025-09-08T07:39:30,276 checking for unistd.h... yes 2025-09-08T07:39:30,591 checking for uint16_t... yes 2025-09-08T07:39:30,904 checking for u_int16_t... yes 2025-09-08T07:39:31,069 checking for __uint16... no 2025-09-08T07:39:31,372 checking for long long... yes 2025-09-08T07:39:31,534 checking sys/resource.h usability... yes 2025-09-08T07:39:31,589 checking sys/resource.h presence... yes 2025-09-08T07:39:31,590 checking for sys/resource.h... yes 2025-09-08T07:39:31,617 checking for unistd.h... (cached) yes 2025-09-08T07:39:31,786 checking sys/time.h usability... yes 2025-09-08T07:39:31,844 checking sys/time.h presence... yes 2025-09-08T07:39:31,844 checking for sys/time.h... yes 2025-09-08T07:39:32,014 checking sys/utsname.h usability... yes 2025-09-08T07:39:32,061 checking sys/utsname.h presence... yes 2025-09-08T07:39:32,061 checking for sys/utsname.h... yes 2025-09-08T07:39:32,211 checking how to run the C++ preprocessor... g++ -E 2025-09-08T07:39:32,502 checking google/malloc_extension.h usability... no 2025-09-08T07:39:32,574 checking google/malloc_extension.h presence... no 2025-09-08T07:39:32,574 checking for google/malloc_extension.h... no 2025-09-08T07:39:32,672 checking whether the compiler implements namespaces... yes 2025-09-08T07:39:33,557 checking the location of hash_map... 2025-09-08T07:39:34,409 checking how to include hash_fun directly... 2025-09-08T07:39:34,501 configure: creating ./config.status 2025-09-08T07:39:34,891 config.status: creating Makefile 2025-09-08T07:39:34,949 config.status: creating src/config.h 2025-09-08T07:39:35,022 config.status: executing depfiles commands 2025-09-08T07:39:35,142 building '_arv' extension 2025-09-08T07:39:35,144 creating build/temp.linux-armv7l-cpython-313/cpp 2025-09-08T07:39:35,145 creating build/temp.linux-armv7l-cpython-313/cython 2025-09-08T07:39:35,145 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/dnatraits.cpp -o build/temp.linux-armv7l-cpython-313/cpp/dnatraits.o --std=c++11 -g0 2025-09-08T07:39:36,369 cpp/dnatraits.cpp: In member function ‘std::vector Genome::intersect_rsid(const Genome&) const’: 2025-09-08T07:39:36,369 cpp/dnatraits.cpp:361:20: warning: loop variable ‘i’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 2025-09-08T07:39:36,370 361 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:36,370 | ^ 2025-09-08T07:39:36,370 cpp/dnatraits.cpp:361:20: note: use reference type to prevent copying 2025-09-08T07:39:36,370 361 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:36,370 | ^ 2025-09-08T07:39:36,370 | & 2025-09-08T07:39:36,372 cpp/dnatraits.cpp: In member function ‘std::vector Genome::intersect_snp(const Genome&) const’: 2025-09-08T07:39:36,372 cpp/dnatraits.cpp:372:20: warning: loop variable ‘i’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 2025-09-08T07:39:36,372 372 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:36,373 | ^ 2025-09-08T07:39:36,373 cpp/dnatraits.cpp:372:20: note: use reference type to prevent copying 2025-09-08T07:39:36,373 372 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:36,373 | ^ 2025-09-08T07:39:36,373 | & 2025-09-08T07:39:36,374 cpp/dnatraits.cpp: In member function ‘std::vector Genome::rsids() const’: 2025-09-08T07:39:36,375 cpp/dnatraits.cpp:385:20: warning: loop variable ‘i’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 2025-09-08T07:39:36,375 385 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:36,375 | ^ 2025-09-08T07:39:36,375 cpp/dnatraits.cpp:385:20: note: use reference type to prevent copying 2025-09-08T07:39:36,375 385 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:36,375 | ^ 2025-09-08T07:39:36,375 | & 2025-09-08T07:39:36,383 cpp/dnatraits.cpp: In member function ‘std::vector Genome::snps() const’: 2025-09-08T07:39:36,383 cpp/dnatraits.cpp:396:20: warning: loop variable ‘i’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 2025-09-08T07:39:36,383 396 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:36,384 | ^ 2025-09-08T07:39:36,384 cpp/dnatraits.cpp:396:20: note: use reference type to prevent copying 2025-09-08T07:39:36,384 396 | for ( const auto i : pimpl->snps ) 2025-09-08T07:39:36,384 | ^ 2025-09-08T07:39:36,384 | & 2025-09-08T07:39:36,558 In file included from cpp/sparsehash/internal/densehashtable.h:101, 2025-09-08T07:39:36,558 from cpp/sparsehash/dense_hash_map:104, 2025-09-08T07:39:36,558 from cpp/google/dense_hash_map:34, 2025-09-08T07:39:36,558 from cpp/dnatraits.cpp:11: 2025-09-08T07:39:36,558 cpp/sparsehash/internal/libc_allocator_with_realloc.h: In instantiation of ‘T* google::libc_allocator_with_realloc::reallocate(pointer, size_type) [with T = std::pair; pointer = std::pair*; size_type = unsigned int]’: 2025-09-08T07:39:36,558 cpp/sparsehash/internal/densehashtable.h:1202:40: required from ‘google::dense_hashtable::alloc_impl >::pointer google::dense_hashtable::alloc_impl >::realloc_or_die(pointer, size_type) [with A = std::pair; Value = std::pair; Key = int; HashFcn = {anonymous}::RSIDHash; ExtractKey = google::dense_hash_map::SelectKey; SetKey = google::dense_hash_map::SetKey; EqualKey = {anonymous}::RSIDEq; Alloc = google::libc_allocator_with_realloc >; pointer = std::pair*; size_type = unsigned int]’ 2025-09-08T07:39:36,558 1202 | pointer retval = this->reallocate(ptr, n); 2025-09-08T07:39:36,559 | ~~~~~~~~~~~~~~~~^~~~~~~~ 2025-09-08T07:39:36,559 cpp/sparsehash/internal/densehashtable.h:628:36: required from ‘void google::dense_hashtable::resize_table(size_type, size_type, google::true_type) [with Value = std::pair; Key = int; HashFcn = {anonymous}::RSIDHash; ExtractKey = google::dense_hash_map::SelectKey; SetKey = google::dense_hash_map::SetKey; EqualKey = {anonymous}::RSIDEq; Alloc = google::libc_allocator_with_realloc >; size_type = unsigned int; google::true_type = google::integral_constant]’ 2025-09-08T07:39:36,559 628 | table = val_info.realloc_or_die(table, new_size); 2025-09-08T07:39:36,559 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-09-08T07:39:36,559 cpp/sparsehash/internal/densehashtable.h:785:21: required from ‘void google::dense_hashtable::clear_to_size(size_type) [with Value = std::pair; Key = int; HashFcn = {anonymous}::RSIDHash; ExtractKey = google::dense_hash_map::SelectKey; SetKey = google::dense_hash_map::SetKey; EqualKey = {anonymous}::RSIDEq; Alloc = google::libc_allocator_with_realloc >; size_type = unsigned int]’ 2025-09-08T07:39:36,559 785 | resize_table(num_buckets, new_num_buckets, realloc_ok()); 2025-09-08T07:39:36,559 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T07:39:36,559 cpp/sparsehash/internal/densehashtable.h:638:5: required from ‘void google::dense_hashtable::copy_from(const google::dense_hashtable&, size_type) [with Value = std::pair; Key = int; HashFcn = {anonymous}::RSIDHash; ExtractKey = google::dense_hash_map::SelectKey; SetKey = google::dense_hash_map::SetKey; EqualKey = {anonymous}::RSIDEq; Alloc = google::libc_allocator_with_realloc >; size_type = unsigned int]’ 2025-09-08T07:39:36,560 638 | clear_to_size(settings.min_buckets(ht.size(), min_buckets_wanted)); 2025-09-08T07:39:36,560 | ^~~~~~~~~~~~~ 2025-09-08T07:39:36,560 cpp/sparsehash/internal/densehashtable.h:729:5: required from ‘google::dense_hashtable::dense_hashtable(const google::dense_hashtable&, size_type) [with Value = std::pair; Key = int; HashFcn = {anonymous}::RSIDHash; ExtractKey = google::dense_hash_map::SelectKey; SetKey = google::dense_hash_map::SetKey; EqualKey = {anonymous}::RSIDEq; Alloc = google::libc_allocator_with_realloc >; size_type = unsigned int]’ 2025-09-08T07:39:36,560 729 | copy_from(ht, min_buckets_wanted); // copy_from() ignores deleted entries 2025-09-08T07:39:36,560 | ^~~~~~~~~ 2025-09-08T07:39:36,560 cpp/sparsehash/dense_hash_map:113:7: required from here 2025-09-08T07:39:36,560 113 | class dense_hash_map { 2025-09-08T07:39:36,560 | ^~~~~~~~~~~~~~ 2025-09-08T07:39:36,560 cpp/sparsehash/internal/libc_allocator_with_realloc.h:68:40: warning: ‘void* realloc(void*, size_t)’ moving an object of non-trivially copyable type ‘struct std::pair’; use ‘new’ and ‘delete’ instead [-Wclass-memaccess] 2025-09-08T07:39:36,561 68 | return static_cast(realloc(p, n * sizeof(value_type))); 2025-09-08T07:39:36,561 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T07:39:36,561 In file included from /usr/include/c++/14/bits/stl_algobase.h:64, 2025-09-08T07:39:36,561 from /usr/include/c++/14/algorithm:60, 2025-09-08T07:39:36,561 from cpp/sparsehash/dense_hash_map:100: 2025-09-08T07:39:36,561 /usr/include/c++/14/bits/stl_pair.h:284:12: note: ‘struct std::pair’ declared here 2025-09-08T07:39:36,561 284 | struct pair 2025-09-08T07:39:36,561 | ^~~~ 2025-09-08T07:39:38,333 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/file.cpp -o build/temp.linux-armv7l-cpython-313/cpp/file.o --std=c++11 -g0 2025-09-08T07:39:39,029 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/filesize.cpp -o build/temp.linux-armv7l-cpython-313/cpp/filesize.o --std=c++11 -g0 2025-09-08T07:39:39,648 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/mmap.cpp -o build/temp.linux-armv7l-cpython-313/cpp/mmap.o --std=c++11 -g0 2025-09-08T07:39:40,268 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cpp/parse_file.cpp -o build/temp.linux-armv7l-cpython-313/cpp/parse_file.o --std=c++11 -g0 2025-09-08T07:39:41,162 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icpp -I/usr/include/python3.13 -c cython/_arv.cpp -o build/temp.linux-armv7l-cpython-313/cython/_arv.o --std=c++11 -g0 2025-09-08T07:39:42,525 cython/_arv.cpp:1556:8: warning: alignment 1 of ‘__pyx_obj_4_arv_PyGenotype’ is less than 4 [-Wpacked-not-aligned] 2025-09-08T07:39:42,525 1556 | struct __pyx_obj_4_arv_PyGenotype { 2025-09-08T07:39:42,525 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T07:39:42,525 cython/_arv.cpp:1569:8: warning: alignment 1 of ‘__pyx_obj_4_arv_PySNP’ is less than 4 [-Wpacked-not-aligned] 2025-09-08T07:39:42,525 1569 | struct __pyx_obj_4_arv_PySNP { 2025-09-08T07:39:42,526 | ^~~~~~~~~~~~~~~~~~~~~ 2025-09-08T07:39:42,526 cython/_arv.cpp:1582:8: warning: alignment 1 of ‘__pyx_obj_4_arv_PyGenome’ is less than 4 [-Wpacked-not-aligned] 2025-09-08T07:39:42,526 1582 | struct __pyx_obj_4_arv_PyGenome { 2025-09-08T07:39:42,526 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T07:39:42,826 In file included from /usr/include/python3.13/frameobject.h:13, 2025-09-08T07:39:42,826 from cython/_arv.cpp:12051: 2025-09-08T07:39:42,826 /usr/include/python3.13/cpython/frameobject.h:32:16: warning: alignment 1 of ‘’ is less than 4 [-Wpacked-not-aligned] 2025-09-08T07:39:42,826 32 | typedef struct { 2025-09-08T07:39:42,826 | ^ 2025-09-08T07:39:42,839 In file included from cython/_arv.cpp:12057: 2025-09-08T07:39:42,839 /usr/include/python3.13/internal/pycore_frame.h:20:8: warning: alignment 1 of ‘_frame’ is less than 4 [-Wpacked-not-aligned] 2025-09-08T07:39:42,839 20 | struct _frame { 2025-09-08T07:39:42,839 | ^~~~~~ 2025-09-08T07:39:48,699 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/cpp/dnatraits.o build/temp.linux-armv7l-cpython-313/cpp/file.o build/temp.linux-armv7l-cpython-313/cpp/filesize.o build/temp.linux-armv7l-cpython-313/cpp/mmap.o build/temp.linux-armv7l-cpython-313/cpp/parse_file.o build/temp.linux-armv7l-cpython-313/cython/_arv.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/_arv.cpython-313-arm-linux-gnueabihf.so 2025-09-08T07:39:49,042 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-08T07:39:49,042 !! 2025-09-08T07:39:49,043 ******************************************************************************** 2025-09-08T07:39:49,043 Please avoid running ``setup.py`` directly. 2025-09-08T07:39:49,043 Instead, use pypa/build, pypa/installer or other 2025-09-08T07:39:49,043 standards-based tools. 2025-09-08T07:39:49,043 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T07:39:49,043 or your builds will no longer be supported. 2025-09-08T07:39:49,043 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-08T07:39:49,043 ******************************************************************************** 2025-09-08T07:39:49,044 !! 2025-09-08T07:39:49,044 self.initialize_options() 2025-09-08T07:39:49,116 installing to build/bdist.linux-armv7l/wheel 2025-09-08T07:39:49,116 running install 2025-09-08T07:39:49,138 running install_lib 2025-09-08T07:39:49,213 creating build/bdist.linux-armv7l/wheel 2025-09-08T07:39:49,213 copying build/lib.linux-armv7l-cpython-313/_arv.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-09-08T07:39:49,215 creating build/bdist.linux-armv7l/wheel/arv 2025-09-08T07:39:49,215 copying build/lib.linux-armv7l-cpython-313/arv/__init__.py -> build/bdist.linux-armv7l/wheel/./arv 2025-09-08T07:39:49,216 copying build/lib.linux-armv7l-cpython-313/arv/match.py -> build/bdist.linux-armv7l/wheel/./arv 2025-09-08T07:39:49,216 copying build/lib.linux-armv7l-cpython-313/arv/traits.py -> build/bdist.linux-armv7l/wheel/./arv 2025-09-08T07:39:49,217 copying build/lib.linux-armv7l-cpython-313/arv/util.py -> build/bdist.linux-armv7l/wheel/./arv 2025-09-08T07:39:49,218 running install_egg_info 2025-09-08T07:39:49,293 running egg_info 2025-09-08T07:39:49,365 writing arv.egg-info/PKG-INFO 2025-09-08T07:39:49,367 writing dependency_links to arv.egg-info/dependency_links.txt 2025-09-08T07:39:49,367 writing requirements to arv.egg-info/requires.txt 2025-09-08T07:39:49,368 writing top-level names to arv.egg-info/top_level.txt 2025-09-08T07:39:49,443 reading manifest file 'arv.egg-info/SOURCES.txt' 2025-09-08T07:39:49,448 reading manifest template 'MANIFEST.in' 2025-09-08T07:39:49,451 warning: no directories found matching 'python' 2025-09-08T07:39:49,452 adding license file 'LICENSES' 2025-09-08T07:39:49,452 adding license file 'COPYING' 2025-09-08T07:39:49,457 writing manifest file 'arv.egg-info/SOURCES.txt' 2025-09-08T07:39:49,458 Copying arv.egg-info to build/bdist.linux-armv7l/wheel/./arv-0.3-py3.13.egg-info 2025-09-08T07:39:49,460 running install_scripts 2025-09-08T07:39:49,509 creating build/bdist.linux-armv7l/wheel/arv-0.3.dist-info/WHEEL 2025-09-08T07:39:49,511 creating '/tmp/pip-wheel-3nhp_gb7/arv-0.3-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-08T07:39:49,534 adding '_arv.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T07:39:49,537 adding 'arv/__init__.py' 2025-09-08T07:39:49,538 adding 'arv/match.py' 2025-09-08T07:39:49,539 adding 'arv/traits.py' 2025-09-08T07:39:49,540 adding 'arv/util.py' 2025-09-08T07:39:49,546 adding 'arv-0.3.dist-info/licenses/COPYING' 2025-09-08T07:39:49,552 adding 'arv-0.3.dist-info/licenses/LICENSES' 2025-09-08T07:39:49,553 adding 'arv-0.3.dist-info/METADATA' 2025-09-08T07:39:49,554 adding 'arv-0.3.dist-info/WHEEL' 2025-09-08T07:39:49,554 adding 'arv-0.3.dist-info/top_level.txt' 2025-09-08T07:39:49,555 adding 'arv-0.3.dist-info/RECORD' 2025-09-08T07:39:49,556 removing build/bdist.linux-armv7l/wheel 2025-09-08T07:39:49,714 Building wheel for arv (setup.py): finished with status 'done' 2025-09-08T07:39:49,716 Created wheel for arv: filename=arv-0.3-cp313-cp313-linux_armv7l.whl size=85700 sha256=994e401e00710816c1e82fbe5771438508eff0a498279510d339eb54ee255a07 2025-09-08T07:39:49,717 Stored in directory: /tmp/pip-ephem-wheel-cache-x3pirimy/wheels/ca/67/fe/b27932cdd60ddb4c15366e8227f4e88d30298f4870b4375b89 2025-09-08T07:39:49,726 Successfully built arv 2025-09-08T07:39:49,728 Removed build tracker: '/tmp/pip-build-tracker-5or83coe'