2025-09-08T08:26:25,617 Created temporary directory: /tmp/pip-build-tracker-kzjcsbvx 2025-09-08T08:26:25,617 Initialized build tracking at /tmp/pip-build-tracker-kzjcsbvx 2025-09-08T08:26:25,618 Created build tracker: /tmp/pip-build-tracker-kzjcsbvx 2025-09-08T08:26:25,618 Entered build tracker: /tmp/pip-build-tracker-kzjcsbvx 2025-09-08T08:26:25,618 Created temporary directory: /tmp/pip-wheel-syr6x8fo 2025-09-08T08:26:25,621 Created temporary directory: /tmp/pip-ephem-wheel-cache-fgu5p4ma 2025-09-08T08:26:25,679 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T08:26:25,681 2 location(s) to search for versions of mitre: 2025-09-08T08:26:25,681 * https://pypi.org/simple/mitre/ 2025-09-08T08:26:25,681 * https://www.piwheels.org/simple/mitre/ 2025-09-08T08:26:25,682 Fetching project page and analyzing links: https://pypi.org/simple/mitre/ 2025-09-08T08:26:25,682 Getting page https://pypi.org/simple/mitre/ 2025-09-08T08:26:25,683 Found index url https://pypi.org/simple/ 2025-09-08T08:26:25,827 Fetched page https://pypi.org/simple/mitre/ as application/vnd.pypi.simple.v1+json 2025-09-08T08:26:25,830 Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/59/f6/233a0adc07eaf97d28545b7f42f8c3bd3a6cd6f98179e644e75257ea869b/mitre-0.9b1-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/) 2025-09-08T08:26:25,831 Found link https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b1 2025-09-08T08:26:25,831 Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/47/14/38f5abf9aabdc12a77be89fbd69618cc833a9e9d4c2c81ba7b3d66f2babd/mitre-0.9b2-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/) 2025-09-08T08:26:25,831 Found link https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b2 2025-09-08T08:26:25,832 Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/07/a1/111c00ce0ab5508eb79f5375ca0fee326ce76b5800a53995018d7b80fb47/mitre-0.9b3-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/) 2025-09-08T08:26:25,832 Found link https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b3 2025-09-08T08:26:25,832 Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/6a/24/8151e74639efbec4abc53d046b077bc30a8030f0a4ed05f341896d08310f/mitre-0.9b4-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/) 2025-09-08T08:26:25,833 Found link https://files.pythonhosted.org/packages/5a/b9/ef6ba6d02cb43873415935aac15ae0af557bc19c68670a4df756a2d19cc4/mitre-0.9b4.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b4 2025-09-08T08:26:25,833 Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/68/39/26cccdca887c89b2e366625711f0447880aa99e424e35fa0767f5f5e6005/mitre-0.9b5-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/) 2025-09-08T08:26:25,833 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/15/1344c018f16ea96f6563f2f783d516efb34ddc67d8b50e95ca55da75e7ce/mitre-0.9b5-py2.7-linux-x86_64.egg (from https://pypi.org/simple/mitre/) 2025-09-08T08:26:25,833 Found link https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b5 2025-09-08T08:26:25,834 Found link https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz (from https://pypi.org/simple/mitre/), version: 1.0b1 2025-09-08T08:26:25,834 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitre/ 2025-09-08T08:26:25,835 Getting page https://www.piwheels.org/simple/mitre/ 2025-09-08T08:26:25,836 Found index url https://www.piwheels.org/simple/ 2025-09-08T08:26:25,929 Fetched page https://www.piwheels.org/simple/mitre/ as text/html 2025-09-08T08:26:25,939 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-1.0b1-cp39-cp39-linux_armv6l.whl#sha256=1a37af90ea65672c4e28cb660625a1a65d99864bc753ffcd68a9575a5bbfde4e (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,939 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-1.0b1-cp39-cp39-linux_armv7l.whl#sha256=1a37af90ea65672c4e28cb660625a1a65d99864bc753ffcd68a9575a5bbfde4e (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,939 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-1.0b1-cp37-cp37m-linux_armv7l.whl#sha256=f6b9b58771d1e721b86177b02ccf669cf154473b8d53595638a6880543c24933 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,939 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-1.0b1-cp37-cp37m-linux_armv6l.whl#sha256=f6b9b58771d1e721b86177b02ccf669cf154473b8d53595638a6880543c24933 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,939 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-1.0b1-cp34-cp34m-linux_armv7l.whl#sha256=c3d1f7e0803ce02b413e067d684c8351fd348869d6fc9c7a39541eefcb7f16ec (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,940 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-1.0b1-cp34-cp34m-linux_armv6l.whl#sha256=c3d1f7e0803ce02b413e067d684c8351fd348869d6fc9c7a39541eefcb7f16ec (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,940 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-1.0b1-cp35-cp35m-linux_armv7l.whl#sha256=10f4e2b732c240f1489d0cce35b9f2fa5aeb32cb4a8d2bc8205f649209c8c829 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,940 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-1.0b1-cp35-cp35m-linux_armv6l.whl#sha256=10f4e2b732c240f1489d0cce35b9f2fa5aeb32cb4a8d2bc8205f649209c8c829 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,940 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b5-cp37-cp37m-linux_armv6l.whl#sha256=4b36f8eb7f6daebd469d1fd74fac3f5e25a4c1295281233fab0c9168c9dc6559 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,940 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b5-cp37-cp37m-linux_armv7l.whl#sha256=4b36f8eb7f6daebd469d1fd74fac3f5e25a4c1295281233fab0c9168c9dc6559 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,940 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b5-cp35-cp35m-linux_armv7l.whl#sha256=d9f570a12e8ae2539d8dc328d694402f010e55b8a16b0bd1bba9d19744eec839 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,940 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b5-cp35-cp35m-linux_armv6l.whl#sha256=d9f570a12e8ae2539d8dc328d694402f010e55b8a16b0bd1bba9d19744eec839 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,941 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b5-cp34-cp34m-linux_armv7l.whl#sha256=722fa89ee5a6344b04655c7d3cada6ef54138428013820b076c0990e24219ece (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,941 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b5-cp34-cp34m-linux_armv6l.whl#sha256=722fa89ee5a6344b04655c7d3cada6ef54138428013820b076c0990e24219ece (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,941 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b5-cp39-cp39-linux_armv6l.whl#sha256=72dd3963e3f14d6e8b9ced9d59c24b949c070dcec53f91e339eb4c5708dc7233 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,941 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b5-cp39-cp39-linux_armv7l.whl#sha256=72dd3963e3f14d6e8b9ced9d59c24b949c070dcec53f91e339eb4c5708dc7233 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,941 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b4-cp37-cp37m-linux_armv7l.whl#sha256=31e7d6f46b91ea02695731c7df337d442dd72c09d3d077b804c6b2735bfdd5c5 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,941 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b4-cp37-cp37m-linux_armv6l.whl#sha256=31e7d6f46b91ea02695731c7df337d442dd72c09d3d077b804c6b2735bfdd5c5 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,941 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b4-cp35-cp35m-linux_armv7l.whl#sha256=f969ddf593dcaac4fab422cec1baf928a2817eb7df21811097553472d297b73d (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,942 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b4-cp35-cp35m-linux_armv6l.whl#sha256=f969ddf593dcaac4fab422cec1baf928a2817eb7df21811097553472d297b73d (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,942 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b4-cp34-cp34m-linux_armv7l.whl#sha256=27cc16875eaa745fc0ef078c85733c1628990f39da85101b7be72ddce6538e9f (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,942 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b4-cp34-cp34m-linux_armv6l.whl#sha256=27cc16875eaa745fc0ef078c85733c1628990f39da85101b7be72ddce6538e9f (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,942 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b3-cp37-cp37m-linux_armv6l.whl#sha256=bd6fef5b4dea820b078f13e7a3bc52d6e4dfbe0c7a25934ed117731f4e9fa58b (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,942 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b3-cp37-cp37m-linux_armv7l.whl#sha256=bd6fef5b4dea820b078f13e7a3bc52d6e4dfbe0c7a25934ed117731f4e9fa58b (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,942 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b3-cp35-cp35m-linux_armv7l.whl#sha256=100934cf7a6511ebd3e27d8ea87fe89e2129503bad7b6c12aba9a7f7d3f9eaeb (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,942 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b3-cp35-cp35m-linux_armv6l.whl#sha256=100934cf7a6511ebd3e27d8ea87fe89e2129503bad7b6c12aba9a7f7d3f9eaeb (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,943 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b3-cp34-cp34m-linux_armv7l.whl#sha256=be764640c5eed610e6be535ccea2bffdcb926318c1302572464f5f0ab967f353 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,943 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b3-cp34-cp34m-linux_armv6l.whl#sha256=be764640c5eed610e6be535ccea2bffdcb926318c1302572464f5f0ab967f353 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,943 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b3-cp39-cp39-linux_armv6l.whl#sha256=277d37bb3170a42acdbc123b2db9ed311c3eb9d6dfc9b3a0f27180aa1feb8e20 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,943 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b3-cp39-cp39-linux_armv7l.whl#sha256=277d37bb3170a42acdbc123b2db9ed311c3eb9d6dfc9b3a0f27180aa1feb8e20 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,943 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b2-cp37-cp37m-linux_armv6l.whl#sha256=a6bc34245279b59a64469012f7421d80492c6c9fa23e52a4eb406af0a0673746 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,943 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b2-cp37-cp37m-linux_armv7l.whl#sha256=a6bc34245279b59a64469012f7421d80492c6c9fa23e52a4eb406af0a0673746 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,943 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b2-cp34-cp34m-linux_armv7l.whl#sha256=95d4041b86655691dc4db5d9290ef62d4d6b27d3d95e60c9f7bf90082088b414 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,943 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b2-cp34-cp34m-linux_armv6l.whl#sha256=95d4041b86655691dc4db5d9290ef62d4d6b27d3d95e60c9f7bf90082088b414 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,944 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b2-cp35-cp35m-linux_armv7l.whl#sha256=ca1f465a44a41a9c3adc4c326ed2492fc05a6114761e8f0f188f20d341c0328d (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,944 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b2-cp35-cp35m-linux_armv6l.whl#sha256=ca1f465a44a41a9c3adc4c326ed2492fc05a6114761e8f0f188f20d341c0328d (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,944 Skipping link: No binaries permitted for mitre: 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https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,944 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b1-cp35-cp35m-linux_armv6l.whl#sha256=6190c26108d42de0a3b22358abc67762aee61d4162b7911a8ff99aecec5759fd (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,945 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b1-cp35-cp35m-linux_armv7l.whl#sha256=6190c26108d42de0a3b22358abc67762aee61d4162b7911a8ff99aecec5759fd (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,945 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b1-cp34-cp34m-linux_armv7l.whl#sha256=bfb358058f7b74bd7382e4f832f5627cc4256b4268ee568e8622df1da356a87a (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,945 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b1-cp34-cp34m-linux_armv6l.whl#sha256=bfb358058f7b74bd7382e4f832f5627cc4256b4268ee568e8622df1da356a87a (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,945 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b1-cp39-cp39-linux_armv6l.whl#sha256=91fb9c82f5fb8a587ad7052a90c4737999eeb2cad3362fa70cc4cde81e1e3fd9 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,945 Skipping link: No binaries permitted for mitre: https://archive1.piwheels.org/simple/mitre/mitre-0.9b1-cp39-cp39-linux_armv7l.whl#sha256=91fb9c82f5fb8a587ad7052a90c4737999eeb2cad3362fa70cc4cde81e1e3fd9 (from https://www.piwheels.org/simple/mitre/) 2025-09-08T08:26:25,945 Skipping link: not a file: https://www.piwheels.org/simple/mitre/ 2025-09-08T08:26:25,945 Skipping link: not a file: https://pypi.org/simple/mitre/ 2025-09-08T08:26:25,968 Given no hashes to check 1 links for project 'mitre': discarding no candidates 2025-09-08T08:26:25,969 Collecting mitre==0.9b1 2025-09-08T08:26:25,970 Created temporary directory: /tmp/pip-unpack-beyg1w8n 2025-09-08T08:26:26,115 Downloading mitre-0.9b1.tar.gz (9.5 MB) 2025-09-08T08:26:28,628 Added mitre==0.9b1 from https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz to build tracker '/tmp/pip-build-tracker-kzjcsbvx' 2025-09-08T08:26:28,629 Running setup.py (path:/tmp/pip-wheel-syr6x8fo/mitre_1f1a124f11944ccd8ec2a3d6d99cc8b5/setup.py) egg_info for package mitre 2025-09-08T08:26:28,629 Created temporary directory: /tmp/pip-pip-egg-info-13x9ipmw 2025-09-08T08:26:28,629 Preparing metadata (setup.py): started 2025-09-08T08:26:28,630 Running command python setup.py egg_info 2025-09-08T08:26:29,377 /tmp/pip-wheel-syr6x8fo/mitre_1f1a124f11944ccd8ec2a3d6d99cc8b5/setup.py:4: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. 2025-09-08T08:26:29,377 import pkg_resources 2025-09-08T08:26:30,100 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '0.9beta1' to '0.9b1' 2025-09-08T08:26:30,100 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T08:26:30,102 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T08:26:30,103 !! 2025-09-08T08:26:30,103 ******************************************************************************** 2025-09-08T08:26:30,103 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T08:26:30,103 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T08:26:30,103 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T08:26:30,103 ******************************************************************************** 2025-09-08T08:26:30,104 !! 2025-09-08T08:26:30,104 self._finalize_license_expression() 2025-09-08T08:26:30,178 running egg_info 2025-09-08T08:26:30,255 creating /tmp/pip-pip-egg-info-13x9ipmw/mitre.egg-info 2025-09-08T08:26:30,255 writing /tmp/pip-pip-egg-info-13x9ipmw/mitre.egg-info/PKG-INFO 2025-09-08T08:26:30,257 writing dependency_links to /tmp/pip-pip-egg-info-13x9ipmw/mitre.egg-info/dependency_links.txt 2025-09-08T08:26:30,257 writing entry points to /tmp/pip-pip-egg-info-13x9ipmw/mitre.egg-info/entry_points.txt 2025-09-08T08:26:30,258 writing requirements to /tmp/pip-pip-egg-info-13x9ipmw/mitre.egg-info/requires.txt 2025-09-08T08:26:30,258 writing top-level names to /tmp/pip-pip-egg-info-13x9ipmw/mitre.egg-info/top_level.txt 2025-09-08T08:26:30,258 writing manifest file '/tmp/pip-pip-egg-info-13x9ipmw/mitre.egg-info/SOURCES.txt' 2025-09-08T08:26:30,491 reading manifest file '/tmp/pip-pip-egg-info-13x9ipmw/mitre.egg-info/SOURCES.txt' 2025-09-08T08:26:30,492 reading manifest template 'MANIFEST.in' 2025-09-08T08:26:30,497 adding license file 'LICENSE.txt' 2025-09-08T08:26:30,502 writing manifest file '/tmp/pip-pip-egg-info-13x9ipmw/mitre.egg-info/SOURCES.txt' 2025-09-08T08:26:30,621 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T08:26:30,626 Source in /tmp/pip-wheel-syr6x8fo/mitre_1f1a124f11944ccd8ec2a3d6d99cc8b5 has version 0.9b1, which satisfies requirement mitre==0.9b1 from https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz 2025-09-08T08:26:30,626 Removed mitre==0.9b1 from https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz from build tracker '/tmp/pip-build-tracker-kzjcsbvx' 2025-09-08T08:26:30,631 Created temporary directory: /tmp/pip-unpack-cm66fu7c 2025-09-08T08:26:30,632 Created temporary directory: /tmp/pip-unpack-ytu89d_0 2025-09-08T08:26:30,632 Building wheels for collected packages: mitre 2025-09-08T08:26:30,634 Created temporary directory: /tmp/pip-wheel-tssg68p1 2025-09-08T08:26:30,634 DEPRECATION: Building 'mitre' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'mitre'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T08:26:30,635 Building wheel for mitre (setup.py): started 2025-09-08T08:26:30,636 Destination directory: /tmp/pip-wheel-tssg68p1 2025-09-08T08:26:30,636 Running command python setup.py bdist_wheel 2025-09-08T08:26:31,388 /tmp/pip-wheel-syr6x8fo/mitre_1f1a124f11944ccd8ec2a3d6d99cc8b5/setup.py:4: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. 2025-09-08T08:26:31,388 import pkg_resources 2025-09-08T08:26:32,089 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '0.9beta1' to '0.9b1' 2025-09-08T08:26:32,089 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T08:26:32,091 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T08:26:32,091 !! 2025-09-08T08:26:32,091 ******************************************************************************** 2025-09-08T08:26:32,091 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T08:26:32,092 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T08:26:32,092 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T08:26:32,092 ******************************************************************************** 2025-09-08T08:26:32,092 !! 2025-09-08T08:26:32,092 self._finalize_license_expression() 2025-09-08T08:26:32,093 running bdist_wheel 2025-09-08T08:26:32,383 running build 2025-09-08T08:26:32,384 running build_py 2025-09-08T08:26:32,461 creating build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,462 copying mitre/visualization.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,462 copying mitre/test.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,463 copying mitre/rules.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,464 copying mitre/prior_by_primitive.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,464 copying mitre/posterior.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,465 copying mitre/mvnpdf_cholesky.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,465 copying mitre/main.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,466 copying mitre/logit_test.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,467 copying mitre/logit_rules.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,467 copying mitre/logit_rule_test.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,468 copying mitre/lambda_quick_test.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,468 copying mitre/key_comparison.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,469 copying mitre/command_line.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,469 copying mitre/__init__.py -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,470 creating build/lib.linux-armv7l-cpython-313/mitre/data_processing 2025-09-08T08:26:32,470 copying mitre/data_processing/transforms.py -> build/lib.linux-armv7l-cpython-313/mitre/data_processing 2025-09-08T08:26:32,471 copying mitre/data_processing/synthetic_data.py -> build/lib.linux-armv7l-cpython-313/mitre/data_processing 2025-09-08T08:26:32,472 copying mitre/data_processing/sequencing.py -> build/lib.linux-armv7l-cpython-313/mitre/data_processing 2025-09-08T08:26:32,472 copying mitre/data_processing/filtering.py -> build/lib.linux-armv7l-cpython-313/mitre/data_processing 2025-09-08T08:26:32,473 copying mitre/data_processing/data_processing.py -> build/lib.linux-armv7l-cpython-313/mitre/data_processing 2025-09-08T08:26:32,473 copying mitre/data_processing/crossvalidation.py -> build/lib.linux-armv7l-cpython-313/mitre/data_processing 2025-09-08T08:26:32,474 copying mitre/data_processing/__init__.py -> build/lib.linux-armv7l-cpython-313/mitre/data_processing 2025-09-08T08:26:32,474 creating build/lib.linux-armv7l-cpython-313/mitre/load_data 2025-09-08T08:26:32,475 copying mitre/load_data/taxonomy_annotation.py -> build/lib.linux-armv7l-cpython-313/mitre/load_data 2025-09-08T08:26:32,475 copying mitre/load_data/pplacer.py -> build/lib.linux-armv7l-cpython-313/mitre/load_data 2025-09-08T08:26:32,476 copying mitre/load_data/distance_based.py -> build/lib.linux-armv7l-cpython-313/mitre/load_data 2025-09-08T08:26:32,476 copying mitre/load_data/basic.py -> build/lib.linux-armv7l-cpython-313/mitre/load_data 2025-09-08T08:26:32,477 copying mitre/load_data/__init__.py -> build/lib.linux-armv7l-cpython-313/mitre/load_data 2025-09-08T08:26:32,478 creating build/lib.linux-armv7l-cpython-313/mitre/trees 2025-09-08T08:26:32,478 copying mitre/trees/utilities.py -> build/lib.linux-armv7l-cpython-313/mitre/trees 2025-09-08T08:26:32,478 copying mitre/trees/simulators.py -> build/lib.linux-armv7l-cpython-313/mitre/trees 2025-09-08T08:26:32,479 copying mitre/trees/priors.py -> build/lib.linux-armv7l-cpython-313/mitre/trees 2025-09-08T08:26:32,479 copying mitre/trees/__init__.py -> build/lib.linux-armv7l-cpython-313/mitre/trees 2025-09-08T08:26:32,480 creating build/lib.linux-armv7l-cpython-313/mitre/comparison_methods 2025-09-08T08:26:32,480 copying mitre/comparison_methods/sklearn_wrappers.py -> build/lib.linux-armv7l-cpython-313/mitre/comparison_methods 2025-09-08T08:26:32,481 copying mitre/comparison_methods/__init__.py -> build/lib.linux-armv7l-cpython-313/mitre/comparison_methods 2025-09-08T08:26:32,481 running egg_info 2025-09-08T08:26:32,553 writing mitre.egg-info/PKG-INFO 2025-09-08T08:26:32,555 writing dependency_links to mitre.egg-info/dependency_links.txt 2025-09-08T08:26:32,555 writing entry points to mitre.egg-info/entry_points.txt 2025-09-08T08:26:32,556 writing requirements to mitre.egg-info/requires.txt 2025-09-08T08:26:32,556 writing top-level names to mitre.egg-info/top_level.txt 2025-09-08T08:26:32,636 reading manifest file 'mitre.egg-info/SOURCES.txt' 2025-09-08T08:26:32,642 reading manifest template 'MANIFEST.in' 2025-09-08T08:26:32,647 adding license file 'LICENSE.txt' 2025-09-08T08:26:32,652 writing manifest file 'mitre.egg-info/SOURCES.txt' 2025-09-08T08:26:32,654 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitre.example_data' is absent from the `packages` configuration. 2025-09-08T08:26:32,654 !! 2025-09-08T08:26:32,655 ******************************************************************************** 2025-09-08T08:26:32,655 ############################ 2025-09-08T08:26:32,655 # Package would be ignored # 2025-09-08T08:26:32,655 ############################ 2025-09-08T08:26:32,655 Python recognizes 'mitre.example_data' as an importable package[^1], 2025-09-08T08:26:32,655 but it is absent from setuptools' `packages` configuration. 2025-09-08T08:26:32,655 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T08:26:32,655 package, please make sure that 'mitre.example_data' is explicitly added 2025-09-08T08:26:32,655 to the `packages` configuration field. 2025-09-08T08:26:32,656 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T08:26:32,656 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T08:26:32,656 instead of `find_packages(...)`/`find:`). 2025-09-08T08:26:32,656 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T08:26:32,656 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T08:26:32,656 If you don't want 'mitre.example_data' to be distributed and are 2025-09-08T08:26:32,656 already explicitly excluding 'mitre.example_data' via 2025-09-08T08:26:32,656 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T08:26:32,657 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T08:26:32,657 combination with a more fine grained `package-data` configuration. 2025-09-08T08:26:32,657 You can read more about "package data files" on setuptools documentation page: 2025-09-08T08:26:32,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T08:26:32,657 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T08:26:32,657 even if it does not contain any `.py` files. 2025-09-08T08:26:32,657 On the other hand, currently there is no concept of package data 2025-09-08T08:26:32,657 directory, all directories are treated like packages. 2025-09-08T08:26:32,658 ******************************************************************************** 2025-09-08T08:26:32,658 !! 2025-09-08T08:26:32,658 check.warn(importable) 2025-09-08T08:26:32,658 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitre.example_data.bokulich' is absent from the `packages` configuration. 2025-09-08T08:26:32,658 !! 2025-09-08T08:26:32,658 ******************************************************************************** 2025-09-08T08:26:32,658 ############################ 2025-09-08T08:26:32,658 # Package would be ignored # 2025-09-08T08:26:32,658 ############################ 2025-09-08T08:26:32,659 Python recognizes 'mitre.example_data.bokulich' as an importable package[^1], 2025-09-08T08:26:32,659 but it is absent from setuptools' `packages` configuration. 2025-09-08T08:26:32,659 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T08:26:32,659 package, please make sure that 'mitre.example_data.bokulich' is explicitly added 2025-09-08T08:26:32,659 to the `packages` configuration field. 2025-09-08T08:26:32,659 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T08:26:32,659 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T08:26:32,659 instead of `find_packages(...)`/`find:`). 2025-09-08T08:26:32,660 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T08:26:32,660 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T08:26:32,660 If you don't want 'mitre.example_data.bokulich' to be distributed and are 2025-09-08T08:26:32,660 already explicitly excluding 'mitre.example_data.bokulich' via 2025-09-08T08:26:32,660 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T08:26:32,660 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T08:26:32,660 combination with a more fine grained `package-data` configuration. 2025-09-08T08:26:32,660 You can read more about "package data files" on setuptools documentation page: 2025-09-08T08:26:32,661 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T08:26:32,661 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T08:26:32,661 even if it does not contain any `.py` files. 2025-09-08T08:26:32,661 On the other hand, currently there is no concept of package data 2025-09-08T08:26:32,661 directory, all directories are treated like packages. 2025-09-08T08:26:32,661 ******************************************************************************** 2025-09-08T08:26:32,661 !! 2025-09-08T08:26:32,661 check.warn(importable) 2025-09-08T08:26:32,662 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitre.example_data.david' is absent from the `packages` configuration. 2025-09-08T08:26:32,662 !! 2025-09-08T08:26:32,662 ******************************************************************************** 2025-09-08T08:26:32,662 ############################ 2025-09-08T08:26:32,662 # Package would be ignored # 2025-09-08T08:26:32,662 ############################ 2025-09-08T08:26:32,662 Python recognizes 'mitre.example_data.david' as an importable package[^1], 2025-09-08T08:26:32,662 but it is absent from setuptools' `packages` configuration. 2025-09-08T08:26:32,662 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T08:26:32,663 package, please make sure that 'mitre.example_data.david' is explicitly added 2025-09-08T08:26:32,663 to the `packages` configuration field. 2025-09-08T08:26:32,663 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T08:26:32,663 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T08:26:32,663 instead of `find_packages(...)`/`find:`). 2025-09-08T08:26:32,663 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T08:26:32,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T08:26:32,663 If you don't want 'mitre.example_data.david' to be distributed and are 2025-09-08T08:26:32,664 already explicitly excluding 'mitre.example_data.david' via 2025-09-08T08:26:32,664 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T08:26:32,664 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T08:26:32,664 combination with a more fine grained `package-data` configuration. 2025-09-08T08:26:32,664 You can read more about "package data files" on setuptools documentation page: 2025-09-08T08:26:32,664 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T08:26:32,664 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T08:26:32,665 even if it does not contain any `.py` files. 2025-09-08T08:26:32,665 On the other hand, currently there is no concept of package data 2025-09-08T08:26:32,665 directory, all directories are treated like packages. 2025-09-08T08:26:32,665 ******************************************************************************** 2025-09-08T08:26:32,665 !! 2025-09-08T08:26:32,665 check.warn(importable) 2025-09-08T08:26:32,665 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitre.example_data.digiulio' is absent from the `packages` configuration. 2025-09-08T08:26:32,665 !! 2025-09-08T08:26:32,665 ******************************************************************************** 2025-09-08T08:26:32,666 ############################ 2025-09-08T08:26:32,666 # Package would be ignored # 2025-09-08T08:26:32,666 ############################ 2025-09-08T08:26:32,666 Python recognizes 'mitre.example_data.digiulio' as an importable package[^1], 2025-09-08T08:26:32,666 but it is absent from setuptools' `packages` configuration. 2025-09-08T08:26:32,666 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T08:26:32,666 package, please make sure that 'mitre.example_data.digiulio' is explicitly added 2025-09-08T08:26:32,666 to the `packages` configuration field. 2025-09-08T08:26:32,666 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T08:26:32,666 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T08:26:32,667 instead of `find_packages(...)`/`find:`). 2025-09-08T08:26:32,667 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T08:26:32,667 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T08:26:32,667 If you don't want 'mitre.example_data.digiulio' to be distributed and are 2025-09-08T08:26:32,667 already explicitly excluding 'mitre.example_data.digiulio' via 2025-09-08T08:26:32,667 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T08:26:32,667 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T08:26:32,667 combination with a more fine grained `package-data` configuration. 2025-09-08T08:26:32,668 You can read more about "package data files" on setuptools documentation page: 2025-09-08T08:26:32,668 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T08:26:32,668 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T08:26:32,668 even if it does not contain any `.py` files. 2025-09-08T08:26:32,668 On the other hand, currently there is no concept of package data 2025-09-08T08:26:32,668 directory, all directories are treated like packages. 2025-09-08T08:26:32,668 ******************************************************************************** 2025-09-08T08:26:32,669 !! 2025-09-08T08:26:32,669 check.warn(importable) 2025-09-08T08:26:32,669 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitre.example_data.karelia' is absent from the `packages` configuration. 2025-09-08T08:26:32,669 !! 2025-09-08T08:26:32,669 ******************************************************************************** 2025-09-08T08:26:32,669 ############################ 2025-09-08T08:26:32,669 # Package would be ignored # 2025-09-08T08:26:32,669 ############################ 2025-09-08T08:26:32,669 Python recognizes 'mitre.example_data.karelia' as an importable package[^1], 2025-09-08T08:26:32,669 but it is absent from setuptools' `packages` configuration. 2025-09-08T08:26:32,670 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T08:26:32,670 package, please make sure that 'mitre.example_data.karelia' is explicitly added 2025-09-08T08:26:32,670 to the `packages` configuration field. 2025-09-08T08:26:32,670 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T08:26:32,670 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T08:26:32,670 instead of `find_packages(...)`/`find:`). 2025-09-08T08:26:32,670 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T08:26:32,671 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T08:26:32,671 If you don't want 'mitre.example_data.karelia' to be distributed and are 2025-09-08T08:26:32,671 already explicitly excluding 'mitre.example_data.karelia' via 2025-09-08T08:26:32,671 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T08:26:32,671 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T08:26:32,671 combination with a more fine grained `package-data` configuration. 2025-09-08T08:26:32,671 You can read more about "package data files" on setuptools documentation page: 2025-09-08T08:26:32,671 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T08:26:32,672 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T08:26:32,672 even if it does not contain any `.py` files. 2025-09-08T08:26:32,672 On the other hand, currently there is no concept of package data 2025-09-08T08:26:32,672 directory, all directories are treated like packages. 2025-09-08T08:26:32,672 ******************************************************************************** 2025-09-08T08:26:32,672 !! 2025-09-08T08:26:32,672 check.warn(importable) 2025-09-08T08:26:32,672 copying mitre/efficient_likelihoods.c -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,672 copying mitre/efficient_likelihoods.pyx -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,673 copying mitre/quick_test.cfg -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,673 copying mitre/template.html -> build/lib.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:32,673 creating build/lib.linux-armv7l-cpython-313/mitre/example_data 2025-09-08T08:26:32,673 copying mitre/example_data/CITATIONS.txt -> build/lib.linux-armv7l-cpython-313/mitre/example_data 2025-09-08T08:26:32,673 copying mitre/example_data/example_settings.cfg -> build/lib.linux-armv7l-cpython-313/mitre/example_data 2025-09-08T08:26:32,673 creating build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,673 copying mitre/example_data/bokulich/NOTE -> build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,673 copying mitre/example_data/bokulich/abundance.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,714 copying mitre/example_data/bokulich/dada2_placements.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,719 copying mitre/example_data/bokulich/placement.jplace -> build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,731 copying mitre/example_data/bokulich/sample_metadata.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,732 copying mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,732 copying mitre/example_data/bokulich/seq_info.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,734 copying mitre/example_data/bokulich/sequence_key.fa -> build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,738 copying mitre/example_data/bokulich/subject_data.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,738 copying mitre/example_data/bokulich/taxaTable.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/bokulich 2025-09-08T08:26:32,744 creating build/lib.linux-armv7l-cpython-313/mitre/example_data/david 2025-09-08T08:26:32,745 copying mitre/example_data/david/abundance.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/david 2025-09-08T08:26:32,775 copying mitre/example_data/david/david_long.cfg.lsf -> build/lib.linux-armv7l-cpython-313/mitre/example_data/david 2025-09-08T08:26:32,776 copying mitre/example_data/david/mothur_placements.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/david 2025-09-08T08:26:32,782 copying mitre/example_data/david/placements.jplace -> build/lib.linux-armv7l-cpython-313/mitre/example_data/david 2025-09-08T08:26:32,822 copying mitre/example_data/david/sample_metadata.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/david 2025-09-08T08:26:32,823 copying mitre/example_data/david/seq_info.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/david 2025-09-08T08:26:32,825 copying mitre/example_data/david/sequence_key.fa -> build/lib.linux-armv7l-cpython-313/mitre/example_data/david 2025-09-08T08:26:32,837 copying mitre/example_data/david/subject_data.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/david 2025-09-08T08:26:32,837 copying mitre/example_data/david/taxaTable.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/david 2025-09-08T08:26:32,844 creating build/lib.linux-armv7l-cpython-313/mitre/example_data/digiulio 2025-09-08T08:26:32,844 copying mitre/example_data/digiulio/abundance.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/digiulio 2025-09-08T08:26:32,865 copying mitre/example_data/digiulio/dada2_placements.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/digiulio 2025-09-08T08:26:32,869 copying mitre/example_data/digiulio/placement.jplace -> build/lib.linux-armv7l-cpython-313/mitre/example_data/digiulio 2025-09-08T08:26:32,876 copying mitre/example_data/digiulio/sample_metadata.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/digiulio 2025-09-08T08:26:32,877 copying mitre/example_data/digiulio/seq_info.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/digiulio 2025-09-08T08:26:32,879 copying mitre/example_data/digiulio/sequence_key.fa -> build/lib.linux-armv7l-cpython-313/mitre/example_data/digiulio 2025-09-08T08:26:32,882 copying mitre/example_data/digiulio/subject_data.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/digiulio 2025-09-08T08:26:32,883 copying mitre/example_data/digiulio/taxaTable.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/digiulio 2025-09-08T08:26:32,889 copying mitre/example_data/digiulio/test.cfg.lsf -> build/lib.linux-armv7l-cpython-313/mitre/example_data/digiulio 2025-09-08T08:26:32,889 creating build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,890 copying mitre/example_data/karelia/README -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,890 copying mitre/example_data/karelia/abundance.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,952 copying mitre/example_data/karelia/add_any_allergy_variables.py -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,953 copying mitre/example_data/karelia/dada2_placements.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,958 copying mitre/example_data/karelia/placement.jplace -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,969 copying mitre/example_data/karelia/sample_data.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,969 copying mitre/example_data/karelia/sample_metadata.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,970 copying mitre/example_data/karelia/seq_info.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,972 copying mitre/example_data/karelia/sequence_key.fa -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,976 copying mitre/example_data/karelia/subject_data.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,977 copying mitre/example_data/karelia/subject_data_augmented.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,978 copying mitre/example_data/karelia/taxaTable.csv -> build/lib.linux-armv7l-cpython-313/mitre/example_data/karelia 2025-09-08T08:26:32,985 running build_ext 2025-09-08T08:26:33,546 building 'efficient_likelihoods' extension 2025-09-08T08:26:33,546 creating build/temp.linux-armv7l-cpython-313/mitre 2025-09-08T08:26:33,547 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/core/include -I/usr/include/python3.13 -c mitre/efficient_likelihoods.c -o build/temp.linux-armv7l-cpython-313/mitre/efficient_likelihoods.o 2025-09-08T08:26:33,906 mitre/efficient_likelihoods.c:57:12: fatal error: longintrepr.h: No such file or directory 2025-09-08T08:26:33,906 57 | #include "longintrepr.h" 2025-09-08T08:26:33,906 | ^~~~~~~~~~~~~~~ 2025-09-08T08:26:33,907 compilation terminated. 2025-09-08T08:26:33,910 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T08:26:34,091 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T08:26:34,102 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T08:26:34,102 exec(compile('"'"''"'"''"'"' 2025-09-08T08:26:34,102 # This is -- a caller that pip uses to run setup.py 2025-09-08T08:26:34,102 # 2025-09-08T08:26:34,102 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T08:26:34,102 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T08:26:34,102 # - It provides a clear error message when setuptools is not installed. 2025-09-08T08:26:34,102 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T08:26:34,102 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T08:26:34,102 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T08:26:34,102 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T08:26:34,102 import os, sys, tokenize, traceback 2025-09-08T08:26:34,102 2025-09-08T08:26:34,102 try: 2025-09-08T08:26:34,102 import setuptools 2025-09-08T08:26:34,102 except ImportError: 2025-09-08T08:26:34,102 print( 2025-09-08T08:26:34,102 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T08:26:34,102 "the build environment with exception:", 2025-09-08T08:26:34,102 file=sys.stderr, 2025-09-08T08:26:34,102 ) 2025-09-08T08:26:34,102 traceback.print_exc() 2025-09-08T08:26:34,102 sys.exit(1) 2025-09-08T08:26:34,102 2025-09-08T08:26:34,102 __file__ = %r 2025-09-08T08:26:34,102 sys.argv[0] = __file__ 2025-09-08T08:26:34,102 2025-09-08T08:26:34,102 if os.path.exists(__file__): 2025-09-08T08:26:34,102 filename = __file__ 2025-09-08T08:26:34,102 with tokenize.open(__file__) as f: 2025-09-08T08:26:34,102 setup_py_code = f.read() 2025-09-08T08:26:34,102 else: 2025-09-08T08:26:34,102 filename = "" 2025-09-08T08:26:34,102 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T08:26:34,102 2025-09-08T08:26:34,102 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T08:26:34,102 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-syr6x8fo/mitre_1f1a124f11944ccd8ec2a3d6d99cc8b5/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-tssg68p1[/] 2025-09-08T08:26:34,103 [bold magenta]cwd[/]: /tmp/pip-wheel-syr6x8fo/mitre_1f1a124f11944ccd8ec2a3d6d99cc8b5/ 2025-09-08T08:26:34,103 Building wheel for mitre (setup.py): finished with status 'error' 2025-09-08T08:26:34,103 ERROR: Failed building wheel for mitre 2025-09-08T08:26:34,104 Running setup.py clean for mitre 2025-09-08T08:26:34,105 Running command python setup.py clean 2025-09-08T08:26:34,843 /tmp/pip-wheel-syr6x8fo/mitre_1f1a124f11944ccd8ec2a3d6d99cc8b5/setup.py:4: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. 2025-09-08T08:26:34,844 import pkg_resources 2025-09-08T08:26:35,546 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '0.9beta1' to '0.9b1' 2025-09-08T08:26:35,546 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T08:26:35,548 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T08:26:35,548 !! 2025-09-08T08:26:35,549 ******************************************************************************** 2025-09-08T08:26:35,549 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T08:26:35,549 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T08:26:35,549 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T08:26:35,549 ******************************************************************************** 2025-09-08T08:26:35,549 !! 2025-09-08T08:26:35,549 self._finalize_license_expression() 2025-09-08T08:26:35,624 running clean 2025-09-08T08:26:35,769 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T08:26:35,769 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T08:26:35,798 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T08:26:35,799 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T08:26:35,799 removing 'build' 2025-09-08T08:26:35,916 Failed to build mitre 2025-09-08T08:26:35,917 ERROR: Failed to build one or more wheels 2025-09-08T08:26:35,918 Exception information: 2025-09-08T08:26:35,918 Traceback (most recent call last): 2025-09-08T08:26:35,918 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T08:26:35,918 status = _inner_run() 2025-09-08T08:26:35,918 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T08:26:35,918 return self.run(options, args) 2025-09-08T08:26:35,918 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T08:26:35,918 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T08:26:35,918 return func(self, options, args) 2025-09-08T08:26:35,918 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T08:26:35,918 raise CommandError("Failed to build one or more wheels") 2025-09-08T08:26:35,918 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T08:26:35,923 Removed build tracker: '/tmp/pip-build-tracker-kzjcsbvx'