2025-09-08T08:48:55,663 Created temporary directory: /tmp/pip-build-tracker-srmr01zp 2025-09-08T08:48:55,664 Initialized build tracking at /tmp/pip-build-tracker-srmr01zp 2025-09-08T08:48:55,664 Created build tracker: /tmp/pip-build-tracker-srmr01zp 2025-09-08T08:48:55,664 Entered build tracker: /tmp/pip-build-tracker-srmr01zp 2025-09-08T08:48:55,665 Created temporary directory: /tmp/pip-wheel-kxo8hit7 2025-09-08T08:48:55,668 Created temporary directory: /tmp/pip-ephem-wheel-cache-dhqux4wt 2025-09-08T08:48:55,726 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T08:48:55,728 2 location(s) to search for versions of pymcell: 2025-09-08T08:48:55,728 * https://pypi.org/simple/pymcell/ 2025-09-08T08:48:55,728 * https://www.piwheels.org/simple/pymcell/ 2025-09-08T08:48:55,729 Fetching project page and analyzing links: https://pypi.org/simple/pymcell/ 2025-09-08T08:48:55,729 Getting page https://pypi.org/simple/pymcell/ 2025-09-08T08:48:55,730 Found index url https://pypi.org/simple/ 2025-09-08T08:48:55,877 Fetched page https://pypi.org/simple/pymcell/ as application/vnd.pypi.simple.v1+json 2025-09-08T08:48:55,879 Found link https://files.pythonhosted.org/packages/d2/c8/171b381142a8c44139007524e4e1df60ffccb7baa1112f736787276d3f69/pymcell-0.1.tar.gz (from https://pypi.org/simple/pymcell/), version: 0.1 2025-09-08T08:48:55,880 Found link https://files.pythonhosted.org/packages/15/c4/2c54dd1441778cf446f9357aea6fd378e3d8fd46628aa9245d965afcb409/pymcell-0.2.tar.gz (from https://pypi.org/simple/pymcell/), version: 0.2 2025-09-08T08:48:55,880 Fetching project page and analyzing links: https://www.piwheels.org/simple/pymcell/ 2025-09-08T08:48:55,881 Getting page https://www.piwheels.org/simple/pymcell/ 2025-09-08T08:48:55,883 Found index url https://www.piwheels.org/simple/ 2025-09-08T08:48:55,993 Fetched page https://www.piwheels.org/simple/pymcell/ as text/html 2025-09-08T08:48:55,995 Skipping link: No binaries permitted for pymcell: https://archive1.piwheels.org/simple/pymcell/pymcell-0.2-cp311-cp311-linux_armv6l.whl#sha256=ad8c7517ed0c37c4aca8cdf336c9281ea0a5b22d0060f11c67958d2c38a2cc61 (from https://www.piwheels.org/simple/pymcell/) 2025-09-08T08:48:55,995 Skipping link: No binaries permitted for pymcell: https://archive1.piwheels.org/simple/pymcell/pymcell-0.2-cp311-cp311-linux_armv7l.whl#sha256=ad8c7517ed0c37c4aca8cdf336c9281ea0a5b22d0060f11c67958d2c38a2cc61 (from https://www.piwheels.org/simple/pymcell/) 2025-09-08T08:48:55,995 Skipping link: No binaries permitted for pymcell: https://archive1.piwheels.org/simple/pymcell/pymcell-0.2-cp39-cp39-linux_armv6l.whl#sha256=e96b2042c3c8dfb8c8b35e822be8717206520d3bed5f2d01e4afecf00ce9e3cf (from https://www.piwheels.org/simple/pymcell/) 2025-09-08T08:48:55,995 Skipping link: No binaries permitted for pymcell: https://archive1.piwheels.org/simple/pymcell/pymcell-0.2-cp39-cp39-linux_armv7l.whl#sha256=e96b2042c3c8dfb8c8b35e822be8717206520d3bed5f2d01e4afecf00ce9e3cf (from https://www.piwheels.org/simple/pymcell/) 2025-09-08T08:48:55,995 Skipping link: No binaries permitted for pymcell: https://archive1.piwheels.org/simple/pymcell/pymcell-0.1-cp311-cp311-linux_armv6l.whl#sha256=43c1131338d4734b273ab6d278df180046cfdf826948a2676b653df095a93347 (from https://www.piwheels.org/simple/pymcell/) 2025-09-08T08:48:55,995 Skipping link: No binaries permitted for pymcell: https://archive1.piwheels.org/simple/pymcell/pymcell-0.1-cp311-cp311-linux_armv7l.whl#sha256=43c1131338d4734b273ab6d278df180046cfdf826948a2676b653df095a93347 (from https://www.piwheels.org/simple/pymcell/) 2025-09-08T08:48:55,996 Skipping link: No binaries permitted for pymcell: https://archive1.piwheels.org/simple/pymcell/pymcell-0.1-cp39-cp39-linux_armv6l.whl#sha256=93642a08f3b2b702c68d3e07632f2804cb9c62976cca999019bee9575489e7d0 (from https://www.piwheels.org/simple/pymcell/) 2025-09-08T08:48:55,996 Skipping link: No binaries permitted for pymcell: https://archive1.piwheels.org/simple/pymcell/pymcell-0.1-cp39-cp39-linux_armv7l.whl#sha256=93642a08f3b2b702c68d3e07632f2804cb9c62976cca999019bee9575489e7d0 (from https://www.piwheels.org/simple/pymcell/) 2025-09-08T08:48:55,996 Skipping link: not a file: https://www.piwheels.org/simple/pymcell/ 2025-09-08T08:48:55,996 Skipping link: not a file: https://pypi.org/simple/pymcell/ 2025-09-08T08:48:56,020 Given no hashes to check 1 links for project 'pymcell': discarding no candidates 2025-09-08T08:48:56,021 Collecting pymcell==0.1 2025-09-08T08:48:56,023 Created temporary directory: /tmp/pip-unpack-wuyjlqsv 2025-09-08T08:48:56,163 Downloading pymcell-0.1.tar.gz (621 kB) 2025-09-08T08:48:56,363 Added pymcell==0.1 from https://files.pythonhosted.org/packages/d2/c8/171b381142a8c44139007524e4e1df60ffccb7baa1112f736787276d3f69/pymcell-0.1.tar.gz to build tracker '/tmp/pip-build-tracker-srmr01zp' 2025-09-08T08:48:56,365 Running setup.py (path:/tmp/pip-wheel-kxo8hit7/pymcell_4b6996127f074f04be6962015a7f77fe/setup.py) egg_info for package pymcell 2025-09-08T08:48:56,365 Created temporary directory: /tmp/pip-pip-egg-info-wf3auc22 2025-09-08T08:48:56,365 Preparing metadata (setup.py): started 2025-09-08T08:48:56,366 Running command python setup.py egg_info 2025-09-08T08:48:57,382 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T08:48:57,383 !! 2025-09-08T08:48:57,383 ******************************************************************************** 2025-09-08T08:48:57,383 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T08:48:57,383 versions. Please use the underscore name 'description_file' instead. 2025-09-08T08:48:57,383 (Affected: pymcell). 2025-09-08T08:48:57,383 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T08:48:57,383 or your builds will no longer be supported. 2025-09-08T08:48:57,384 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T08:48:57,384 ******************************************************************************** 2025-09-08T08:48:57,384 !! 2025-09-08T08:48:57,384 opt = self._enforce_underscore(opt, section) 2025-09-08T08:48:57,880 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T08:48:57,885 Source in /tmp/pip-wheel-kxo8hit7/pymcell_4b6996127f074f04be6962015a7f77fe has version 0.1, which satisfies requirement pymcell==0.1 from https://files.pythonhosted.org/packages/d2/c8/171b381142a8c44139007524e4e1df60ffccb7baa1112f736787276d3f69/pymcell-0.1.tar.gz 2025-09-08T08:48:57,885 Removed pymcell==0.1 from https://files.pythonhosted.org/packages/d2/c8/171b381142a8c44139007524e4e1df60ffccb7baa1112f736787276d3f69/pymcell-0.1.tar.gz from build tracker '/tmp/pip-build-tracker-srmr01zp' 2025-09-08T08:48:57,888 Created temporary directory: /tmp/pip-unpack-9tam7wju 2025-09-08T08:48:57,888 Created temporary directory: /tmp/pip-unpack-j80bss6k 2025-09-08T08:48:57,888 Building wheels for collected packages: pymcell 2025-09-08T08:48:57,889 Created temporary directory: /tmp/pip-wheel-1v5jc93c 2025-09-08T08:48:57,890 DEPRECATION: Building 'pymcell' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pymcell'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T08:48:57,891 Building wheel for pymcell (setup.py): started 2025-09-08T08:48:57,891 Destination directory: /tmp/pip-wheel-1v5jc93c 2025-09-08T08:48:57,892 Running command python setup.py bdist_wheel 2025-09-08T08:48:58,887 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T08:48:58,887 !! 2025-09-08T08:48:58,887 ******************************************************************************** 2025-09-08T08:48:58,887 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T08:48:58,888 versions. Please use the underscore name 'description_file' instead. 2025-09-08T08:48:58,888 (Affected: pymcell). 2025-09-08T08:48:58,888 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T08:48:58,888 or your builds will no longer be supported. 2025-09-08T08:48:58,888 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T08:48:58,888 ******************************************************************************** 2025-09-08T08:48:58,888 !! 2025-09-08T08:48:58,888 opt = self._enforce_underscore(opt, section) 2025-09-08T08:48:59,535 Deprecated command line option: -py3. Ignored, this option is no longer supported. 2025-09-08T08:49:16,853 dyngeom_lex.c: In function ‘yy_get_next_buffer’: 2025-09-08T08:49:16,853 dyngeom_lex.c:1395:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘yy_size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-08T08:49:22,905 ./src/init.c: In function ‘output_relreg_eval_tree’: 2025-09-08T08:49:22,909 ./src/init.c:3669:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2025-09-08T08:49:22,909 3669 | strncpy(prefixA, prefix, l); 2025-09-08T08:49:22,909 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T08:49:22,912 ./src/init.c:3661:14: note: length computed here 2025-09-08T08:49:22,913 3661 | size_t l = strlen(prefix); 2025-09-08T08:49:22,913 | ^~~~~~~~~~~~~~ 2025-09-08T08:49:22,916 ./src/init.c:3670:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2025-09-08T08:49:22,916 3670 | strncpy(prefixB, prefix, l); 2025-09-08T08:49:22,916 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T08:49:22,919 ./src/init.c:3661:14: note: length computed here 2025-09-08T08:49:22,920 3661 | size_t l = strlen(prefix); 2025-09-08T08:49:22,920 | ^~~~~~~~~~~~~~ 2025-09-08T08:49:40,352 ./src/pymcell_wrap.c: In function ‘_wrap_mcell_argparse’: 2025-09-08T08:49:40,356 ./src/pymcell_wrap.c:4423:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-08T08:49:40,356 4423 | arg2[i] = PyUnicode_AsUTF8(PyList_GetItem(swig_obj[1],i)); 2025-09-08T08:49:40,356 | ^ 2025-09-08T08:49:40,721 ./src/pymcell_wrap.c: In function ‘_wrap_mcell_modify_multiple_rate_constants’: 2025-09-08T08:49:40,729 ./src/pymcell_wrap.c:8578:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-08T08:49:40,729 8578 | arg2[i] = PyUnicode_AsUTF8(PyList_GetItem(swig_obj[1],i)); 2025-09-08T08:49:40,729 | ^ 2025-09-08T08:49:40,879 ./src/pymcell_wrap.c: In function ‘_wrap_existing_region’: 2025-09-08T08:49:40,892 ./src/pymcell_wrap.c:10139:32: error: implicit declaration of function ‘existing_region’; did you mean ‘_wrap_existing_region’? [-Wimplicit-function-declaration] 2025-09-08T08:49:40,892 10139 | result = (struct sym_entry *)existing_region(arg1,arg2,arg3); 2025-09-08T08:49:40,892 | ^~~~~~~~~~~~~~~ 2025-09-08T08:49:40,893 | _wrap_existing_region 2025-09-08T08:49:42,174 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T08:49:42,317 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T08:49:42,328 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T08:49:42,328 exec(compile('"'"''"'"''"'"' 2025-09-08T08:49:42,328 # This is -- a caller that pip uses to run setup.py 2025-09-08T08:49:42,328 # 2025-09-08T08:49:42,328 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T08:49:42,328 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T08:49:42,328 # - It provides a clear error message when setuptools is not installed. 2025-09-08T08:49:42,328 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T08:49:42,328 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T08:49:42,328 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T08:49:42,328 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T08:49:42,328 import os, sys, tokenize, traceback 2025-09-08T08:49:42,328 2025-09-08T08:49:42,328 try: 2025-09-08T08:49:42,328 import setuptools 2025-09-08T08:49:42,328 except ImportError: 2025-09-08T08:49:42,328 print( 2025-09-08T08:49:42,328 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T08:49:42,328 "the build environment with exception:", 2025-09-08T08:49:42,328 file=sys.stderr, 2025-09-08T08:49:42,328 ) 2025-09-08T08:49:42,328 traceback.print_exc() 2025-09-08T08:49:42,328 sys.exit(1) 2025-09-08T08:49:42,328 2025-09-08T08:49:42,328 __file__ = %r 2025-09-08T08:49:42,328 sys.argv[0] = __file__ 2025-09-08T08:49:42,328 2025-09-08T08:49:42,328 if os.path.exists(__file__): 2025-09-08T08:49:42,328 filename = __file__ 2025-09-08T08:49:42,328 with tokenize.open(__file__) as f: 2025-09-08T08:49:42,328 setup_py_code = f.read() 2025-09-08T08:49:42,328 else: 2025-09-08T08:49:42,328 filename = "" 2025-09-08T08:49:42,328 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T08:49:42,328 2025-09-08T08:49:42,328 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T08:49:42,328 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-kxo8hit7/pymcell_4b6996127f074f04be6962015a7f77fe/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-1v5jc93c[/] 2025-09-08T08:49:42,329 [bold magenta]cwd[/]: /tmp/pip-wheel-kxo8hit7/pymcell_4b6996127f074f04be6962015a7f77fe/ 2025-09-08T08:49:42,329 Building wheel for pymcell (setup.py): finished with status 'error' 2025-09-08T08:49:42,330 ERROR: Failed building wheel for pymcell 2025-09-08T08:49:42,330 Running setup.py clean for pymcell 2025-09-08T08:49:42,331 Running command python setup.py clean 2025-09-08T08:49:43,410 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T08:49:43,410 !! 2025-09-08T08:49:43,410 ******************************************************************************** 2025-09-08T08:49:43,410 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T08:49:43,410 versions. Please use the underscore name 'description_file' instead. 2025-09-08T08:49:43,410 (Affected: pymcell). 2025-09-08T08:49:43,411 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T08:49:43,411 or your builds will no longer be supported. 2025-09-08T08:49:43,411 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T08:49:43,411 ******************************************************************************** 2025-09-08T08:49:43,411 !! 2025-09-08T08:49:43,411 opt = self._enforce_underscore(opt, section) 2025-09-08T08:49:43,565 'build/lib.linux-armv7l-cpython-313' does not exist -- can't clean it 2025-09-08T08:49:43,566 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T08:49:43,566 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T08:49:43,677 Failed to build pymcell 2025-09-08T08:49:43,678 ERROR: Failed to build one or more wheels 2025-09-08T08:49:43,679 Exception information: 2025-09-08T08:49:43,679 Traceback (most recent call last): 2025-09-08T08:49:43,679 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T08:49:43,679 status = _inner_run() 2025-09-08T08:49:43,679 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T08:49:43,679 return self.run(options, args) 2025-09-08T08:49:43,679 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T08:49:43,679 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T08:49:43,679 return func(self, options, args) 2025-09-08T08:49:43,679 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T08:49:43,679 raise CommandError("Failed to build one or more wheels") 2025-09-08T08:49:43,679 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T08:49:43,683 Removed build tracker: '/tmp/pip-build-tracker-srmr01zp'