2025-09-08T09:00:04,446 Created temporary directory: /tmp/pip-build-tracker-bqbkfaab
2025-09-08T09:00:04,446 Initialized build tracking at /tmp/pip-build-tracker-bqbkfaab
2025-09-08T09:00:04,447 Created build tracker: /tmp/pip-build-tracker-bqbkfaab
2025-09-08T09:00:04,447 Entered build tracker: /tmp/pip-build-tracker-bqbkfaab
2025-09-08T09:00:04,447 Created temporary directory: /tmp/pip-wheel-tr40kzxd
2025-09-08T09:00:04,450 Created temporary directory: /tmp/pip-ephem-wheel-cache-jb16ftll
2025-09-08T09:00:04,507 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T09:00:04,509 2 location(s) to search for versions of seqlib:
2025-09-08T09:00:04,509 * https://pypi.org/simple/seqlib/
2025-09-08T09:00:04,509 * https://www.piwheels.org/simple/seqlib/
2025-09-08T09:00:04,509 Fetching project page and analyzing links: https://pypi.org/simple/seqlib/
2025-09-08T09:00:04,510 Getting page https://pypi.org/simple/seqlib/
2025-09-08T09:00:04,511 Found index url https://pypi.org/simple/
2025-09-08T09:00:04,670 Fetched page https://pypi.org/simple/seqlib/ as application/vnd.pypi.simple.v1+json
2025-09-08T09:00:04,673   Found link https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.2
2025-09-08T09:00:04,673   Found link https://files.pythonhosted.org/packages/92/c5/5e920fe60a3122bcf29e71c61e829f4282a80dd74be60fd0d0d41b199403/seqlib-0.0.3.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.3
2025-09-08T09:00:04,674   Skipping link: No binaries permitted for seqlib: https://files.pythonhosted.org/packages/f0/04/ff9d870e2c374d0fa0b8127b0ab225c241fa6cbe28cb9cc58ad901fa0dd5/seqlib-0.0.5-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/seqlib/)
2025-09-08T09:00:04,674   Found link https://files.pythonhosted.org/packages/98/24/83eecf315d536649ef65bfa3f99cf3115674f5ab46217e6a8126256d96a2/seqlib-0.0.5.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.5
2025-09-08T09:00:04,675   Skipping link: No binaries permitted for seqlib: https://files.pythonhosted.org/packages/07/06/4177555c0421661b1d3d8a6d60c25df7527a4653792f76f6077a217f9e2b/seqlib-0.0.6-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/seqlib/)
2025-09-08T09:00:04,675   Found link https://files.pythonhosted.org/packages/62/35/8b843ab21b0a4cd669088097615d2a4008d683137485825f925bb3cb753b/seqlib-0.0.6.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.6
2025-09-08T09:00:04,676 Fetching project page and analyzing links: https://www.piwheels.org/simple/seqlib/
2025-09-08T09:00:04,676 Getting page https://www.piwheels.org/simple/seqlib/
2025-09-08T09:00:04,678 Found index url https://www.piwheels.org/simple/
2025-09-08T09:00:04,773 Fetched page https://www.piwheels.org/simple/seqlib/ as text/html
2025-09-08T09:00:04,773 Skipping link: not a file: https://www.piwheels.org/simple/seqlib/
2025-09-08T09:00:04,774 Skipping link: not a file: https://pypi.org/simple/seqlib/
2025-09-08T09:00:04,797 Given no hashes to check 1 links for project 'seqlib': discarding no candidates
2025-09-08T09:00:04,798 Collecting seqlib==0.0.2
2025-09-08T09:00:04,800   Created temporary directory: /tmp/pip-unpack-b569nx3e
2025-09-08T09:00:05,057   Downloading seqlib-0.0.2.tar.gz (5.0 kB)
2025-09-08T09:00:05,084   Added seqlib==0.0.2 from https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-bqbkfaab'
2025-09-08T09:00:05,085   Running setup.py (path:/tmp/pip-wheel-tr40kzxd/seqlib_0227478b9b3140afb0c00857e6467bd8/setup.py) egg_info for package seqlib
2025-09-08T09:00:05,086   Created temporary directory: /tmp/pip-pip-egg-info-dr65ladf
2025-09-08T09:00:05,086   Preparing metadata (setup.py): started
2025-09-08T09:00:05,087   Running command python setup.py egg_info
2025-09-08T09:00:06,236   running egg_info
2025-09-08T09:00:06,310   creating /tmp/pip-pip-egg-info-dr65ladf/seqlib.egg-info
2025-09-08T09:00:06,310   writing /tmp/pip-pip-egg-info-dr65ladf/seqlib.egg-info/PKG-INFO
2025-09-08T09:00:06,312   writing dependency_links to /tmp/pip-pip-egg-info-dr65ladf/seqlib.egg-info/dependency_links.txt
2025-09-08T09:00:06,312   writing requirements to /tmp/pip-pip-egg-info-dr65ladf/seqlib.egg-info/requires.txt
2025-09-08T09:00:06,313   writing top-level names to /tmp/pip-pip-egg-info-dr65ladf/seqlib.egg-info/top_level.txt
2025-09-08T09:00:06,313   writing manifest file '/tmp/pip-pip-egg-info-dr65ladf/seqlib.egg-info/SOURCES.txt'
2025-09-08T09:00:06,539   reading manifest file '/tmp/pip-pip-egg-info-dr65ladf/seqlib.egg-info/SOURCES.txt'
2025-09-08T09:00:06,542   writing manifest file '/tmp/pip-pip-egg-info-dr65ladf/seqlib.egg-info/SOURCES.txt'
2025-09-08T09:00:06,654   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T09:00:06,659   Source in /tmp/pip-wheel-tr40kzxd/seqlib_0227478b9b3140afb0c00857e6467bd8 has version 0.0.2, which satisfies requirement seqlib==0.0.2 from https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz
2025-09-08T09:00:06,659   Removed seqlib==0.0.2 from https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-bqbkfaab'
2025-09-08T09:00:06,662 Created temporary directory: /tmp/pip-unpack-lxunlent
2025-09-08T09:00:06,662 Created temporary directory: /tmp/pip-unpack-sd1bat_w
2025-09-08T09:00:06,663 Building wheels for collected packages: seqlib
2025-09-08T09:00:06,664   Created temporary directory: /tmp/pip-wheel-vutbq2yg
2025-09-08T09:00:06,664   DEPRECATION: Building 'seqlib' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'seqlib'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T09:00:06,666   Building wheel for seqlib (setup.py): started
2025-09-08T09:00:06,667   Destination directory: /tmp/pip-wheel-vutbq2yg
2025-09-08T09:00:06,667   Running command python setup.py bdist_wheel
2025-09-08T09:00:07,747   running bdist_wheel
2025-09-08T09:00:08,043   running build
2025-09-08T09:00:08,043   running build_py
2025-09-08T09:00:08,120   creating build/lib.linux-armv7l-cpython-313/seqlib
2025-09-08T09:00:08,121   copying src/seqlib/__init__.py -> build/lib.linux-armv7l-cpython-313/seqlib
2025-09-08T09:00:08,122   running build_ext
2025-09-08T09:00:08,129   creating tmp
2025-09-08T09:00:08,130   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c /tmp/tmpal2vg7mk.cpp -o tmp/tmpal2vg7mk.o -std=c++14
2025-09-08T09:00:08,201   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c /tmp/tmps0hrpevm.cpp -o tmp/tmps0hrpevm.o -fvisibility=hidden
2025-09-08T09:00:08,270   error: [Errno 2] No such file or directory: '/tmp/pip-wheel-tr40kzxd/seqlib_0227478b9b3140afb0c00857e6467bd8/lib/SeqLib/htslib/Makefile'
2025-09-08T09:00:08,386   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T09:00:08,398   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T09:00:08,398   exec(compile('"'"''"'"''"'"'
2025-09-08T09:00:08,398   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T09:00:08,398   #
2025-09-08T09:00:08,398   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T09:00:08,398   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T09:00:08,398   # - It provides a clear error message when setuptools is not installed.
2025-09-08T09:00:08,398   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T09:00:08,398   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T09:00:08,398   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T09:00:08,398   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T09:00:08,398   import os, sys, tokenize, traceback
2025-09-08T09:00:08,398   
2025-09-08T09:00:08,398   try:
2025-09-08T09:00:08,398       import setuptools
2025-09-08T09:00:08,398   except ImportError:
2025-09-08T09:00:08,398       print(
2025-09-08T09:00:08,398           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T09:00:08,398           "the build environment with exception:",
2025-09-08T09:00:08,398           file=sys.stderr,
2025-09-08T09:00:08,398       )
2025-09-08T09:00:08,398       traceback.print_exc()
2025-09-08T09:00:08,398       sys.exit(1)
2025-09-08T09:00:08,398   
2025-09-08T09:00:08,398   __file__ = %r
2025-09-08T09:00:08,398   sys.argv[0] = __file__
2025-09-08T09:00:08,398   
2025-09-08T09:00:08,398   if os.path.exists(__file__):
2025-09-08T09:00:08,398       filename = __file__
2025-09-08T09:00:08,398       with tokenize.open(__file__) as f:
2025-09-08T09:00:08,398           setup_py_code = f.read()
2025-09-08T09:00:08,398   else:
2025-09-08T09:00:08,398       filename = "<auto-generated setuptools caller>"
2025-09-08T09:00:08,398       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T09:00:08,398   
2025-09-08T09:00:08,398   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T09:00:08,398   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-tr40kzxd/seqlib_0227478b9b3140afb0c00857e6467bd8/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-vutbq2yg[/]
2025-09-08T09:00:08,398   [bold magenta]cwd[/]: /tmp/pip-wheel-tr40kzxd/seqlib_0227478b9b3140afb0c00857e6467bd8/
2025-09-08T09:00:08,398   Building wheel for seqlib (setup.py): finished with status 'error'
2025-09-08T09:00:08,399   ERROR: Failed building wheel for seqlib
2025-09-08T09:00:08,400   Running setup.py clean for seqlib
2025-09-08T09:00:08,400   Running command python setup.py clean
2025-09-08T09:00:09,562   running clean
2025-09-08T09:00:09,710   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T09:00:09,710   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T09:00:09,710   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T09:00:09,710   removing 'build'
2025-09-08T09:00:09,822 Failed to build seqlib
2025-09-08T09:00:09,822 ERROR: Failed to build one or more wheels
2025-09-08T09:00:09,823 Exception information:
2025-09-08T09:00:09,823 Traceback (most recent call last):
2025-09-08T09:00:09,823   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T09:00:09,823     status = _inner_run()
2025-09-08T09:00:09,823   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T09:00:09,823     return self.run(options, args)
2025-09-08T09:00:09,823            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T09:00:09,823   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T09:00:09,823     return func(self, options, args)
2025-09-08T09:00:09,823   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T09:00:09,823     raise CommandError("Failed to build one or more wheels")
2025-09-08T09:00:09,823 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T09:00:09,828 Removed build tracker: '/tmp/pip-build-tracker-bqbkfaab'