2025-09-08T09:00:08,123 Created temporary directory: /tmp/pip-build-tracker-04r8gq67 2025-09-08T09:00:08,124 Initialized build tracking at /tmp/pip-build-tracker-04r8gq67 2025-09-08T09:00:08,124 Created build tracker: /tmp/pip-build-tracker-04r8gq67 2025-09-08T09:00:08,124 Entered build tracker: /tmp/pip-build-tracker-04r8gq67 2025-09-08T09:00:08,125 Created temporary directory: /tmp/pip-wheel-axr92_px 2025-09-08T09:00:08,128 Created temporary directory: /tmp/pip-ephem-wheel-cache-xhg_rvf6 2025-09-08T09:00:08,189 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T09:00:08,192 2 location(s) to search for versions of seqlib: 2025-09-08T09:00:08,192 * https://pypi.org/simple/seqlib/ 2025-09-08T09:00:08,192 * https://www.piwheels.org/simple/seqlib/ 2025-09-08T09:00:08,192 Fetching project page and analyzing links: https://pypi.org/simple/seqlib/ 2025-09-08T09:00:08,192 Getting page https://pypi.org/simple/seqlib/ 2025-09-08T09:00:08,193 Found index url https://pypi.org/simple/ 2025-09-08T09:00:08,264 Fetched page https://pypi.org/simple/seqlib/ as application/vnd.pypi.simple.v1+json 2025-09-08T09:00:08,266 Found link https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.2 2025-09-08T09:00:08,266 Found link https://files.pythonhosted.org/packages/92/c5/5e920fe60a3122bcf29e71c61e829f4282a80dd74be60fd0d0d41b199403/seqlib-0.0.3.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.3 2025-09-08T09:00:08,266 Skipping link: No binaries permitted for seqlib: https://files.pythonhosted.org/packages/f0/04/ff9d870e2c374d0fa0b8127b0ab225c241fa6cbe28cb9cc58ad901fa0dd5/seqlib-0.0.5-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/seqlib/) 2025-09-08T09:00:08,266 Found link https://files.pythonhosted.org/packages/98/24/83eecf315d536649ef65bfa3f99cf3115674f5ab46217e6a8126256d96a2/seqlib-0.0.5.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.5 2025-09-08T09:00:08,267 Skipping link: No binaries permitted for seqlib: https://files.pythonhosted.org/packages/07/06/4177555c0421661b1d3d8a6d60c25df7527a4653792f76f6077a217f9e2b/seqlib-0.0.6-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/seqlib/) 2025-09-08T09:00:08,267 Found link https://files.pythonhosted.org/packages/62/35/8b843ab21b0a4cd669088097615d2a4008d683137485825f925bb3cb753b/seqlib-0.0.6.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.6 2025-09-08T09:00:08,267 Fetching project page and analyzing links: https://www.piwheels.org/simple/seqlib/ 2025-09-08T09:00:08,267 Getting page https://www.piwheels.org/simple/seqlib/ 2025-09-08T09:00:08,268 Found index url https://www.piwheels.org/simple/ 2025-09-08T09:00:08,562 Fetched page https://www.piwheels.org/simple/seqlib/ as text/html 2025-09-08T09:00:08,564 Skipping link: not a file: https://www.piwheels.org/simple/seqlib/ 2025-09-08T09:00:08,564 Skipping link: not a file: https://pypi.org/simple/seqlib/ 2025-09-08T09:00:08,596 Given no hashes to check 1 links for project 'seqlib': discarding no candidates 2025-09-08T09:00:08,597 Collecting seqlib==0.0.5 2025-09-08T09:00:08,599 Created temporary directory: /tmp/pip-unpack-fhzu35tn 2025-09-08T09:00:08,834 Downloading seqlib-0.0.5.tar.gz (1.8 MB) 2025-09-08T09:00:09,612 Added seqlib==0.0.5 from https://files.pythonhosted.org/packages/98/24/83eecf315d536649ef65bfa3f99cf3115674f5ab46217e6a8126256d96a2/seqlib-0.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-04r8gq67' 2025-09-08T09:00:09,613 Running setup.py (path:/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/setup.py) egg_info for package seqlib 2025-09-08T09:00:09,614 Created temporary directory: /tmp/pip-pip-egg-info-mq4ygceg 2025-09-08T09:00:09,614 Preparing metadata (setup.py): started 2025-09-08T09:00:09,615 Running command python setup.py egg_info 2025-09-08T09:00:10,833 running egg_info 2025-09-08T09:00:10,905 creating /tmp/pip-pip-egg-info-mq4ygceg/seqlib.egg-info 2025-09-08T09:00:10,905 writing /tmp/pip-pip-egg-info-mq4ygceg/seqlib.egg-info/PKG-INFO 2025-09-08T09:00:10,907 writing dependency_links to /tmp/pip-pip-egg-info-mq4ygceg/seqlib.egg-info/dependency_links.txt 2025-09-08T09:00:10,907 writing requirements to /tmp/pip-pip-egg-info-mq4ygceg/seqlib.egg-info/requires.txt 2025-09-08T09:00:10,908 writing top-level names to /tmp/pip-pip-egg-info-mq4ygceg/seqlib.egg-info/top_level.txt 2025-09-08T09:00:10,908 writing manifest file '/tmp/pip-pip-egg-info-mq4ygceg/seqlib.egg-info/SOURCES.txt' 2025-09-08T09:00:11,134 reading manifest file '/tmp/pip-pip-egg-info-mq4ygceg/seqlib.egg-info/SOURCES.txt' 2025-09-08T09:00:11,135 reading manifest template 'MANIFEST.in' 2025-09-08T09:00:11,172 writing manifest file '/tmp/pip-pip-egg-info-mq4ygceg/seqlib.egg-info/SOURCES.txt' 2025-09-08T09:00:11,285 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T09:00:11,289 Source in /tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1 has version 0.0.5, which satisfies requirement seqlib==0.0.5 from https://files.pythonhosted.org/packages/98/24/83eecf315d536649ef65bfa3f99cf3115674f5ab46217e6a8126256d96a2/seqlib-0.0.5.tar.gz 2025-09-08T09:00:11,289 Removed seqlib==0.0.5 from https://files.pythonhosted.org/packages/98/24/83eecf315d536649ef65bfa3f99cf3115674f5ab46217e6a8126256d96a2/seqlib-0.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-04r8gq67' 2025-09-08T09:00:11,293 Created temporary directory: /tmp/pip-unpack-cmuhg6ri 2025-09-08T09:00:11,293 Created temporary directory: /tmp/pip-unpack-fp4zzokm 2025-09-08T09:00:11,293 Building wheels for collected packages: seqlib 2025-09-08T09:00:11,295 Created temporary directory: /tmp/pip-wheel-ahkhm2aj 2025-09-08T09:00:11,295 DEPRECATION: Building 'seqlib' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'seqlib'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T09:00:11,296 Building wheel for seqlib (setup.py): started 2025-09-08T09:00:11,297 Destination directory: /tmp/pip-wheel-ahkhm2aj 2025-09-08T09:00:11,297 Running command python setup.py bdist_wheel 2025-09-08T09:00:12,818 running bdist_wheel 2025-09-08T09:00:13,105 running build 2025-09-08T09:00:13,105 running build_py 2025-09-08T09:00:13,180 creating build/lib.linux-armv7l-cpython-313/seqlib 2025-09-08T09:00:13,181 copying src/seqlib/__init__.py -> build/lib.linux-armv7l-cpython-313/seqlib 2025-09-08T09:00:13,182 running build_ext 2025-09-08T09:00:13,189 creating tmp 2025-09-08T09:00:13,190 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c /tmp/tmp3mq0xtv6.cpp -o tmp/tmp3mq0xtv6.o -std=c++14 2025-09-08T09:00:13,252 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c /tmp/tmpmyqwhjae.cpp -o tmp/tmpmyqwhjae.o -fvisibility=hidden 2025-09-08T09:00:13,317 Running command: ./configure CFLAGS=-fPIC CXXFLAGS=-fPIC 2025-09-08T09:00:13,782 checking for a BSD-compatible install... /usr/bin/install -c 2025-09-08T09:00:13,798 checking whether build environment is sane... yes 2025-09-08T09:00:13,828 /tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/lib/SeqLib/missing: Unknown `--is-lightweight' option 2025-09-08T09:00:13,829 Try `/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/lib/SeqLib/missing --help' for more information 2025-09-08T09:00:13,829 configure: WARNING: 'missing' script is too old or missing 2025-09-08T09:00:13,839 checking for a thread-safe mkdir -p... /usr/bin/mkdir -p 2025-09-08T09:00:13,841 checking for gawk... gawk 2025-09-08T09:00:13,873 checking whether make sets $(MAKE)... yes 2025-09-08T09:00:13,900 checking whether make supports nested variables... yes 2025-09-08T09:00:13,935 checking whether to enable maintainer-specific portions of Makefiles... no 2025-09-08T09:00:13,938 checking for g++... g++ 2025-09-08T09:00:14,278 checking whether the C++ compiler works... yes 2025-09-08T09:00:14,279 checking for C++ compiler default output file name... a.out 2025-09-08T09:00:14,493 checking for suffix of executables... 2025-09-08T09:00:14,752 checking whether we are cross compiling... no 2025-09-08T09:00:14,843 checking for suffix of object files... o 2025-09-08T09:00:14,925 checking whether we are using the GNU C++ compiler... yes 2025-09-08T09:00:15,009 checking whether g++ accepts -g... yes 2025-09-08T09:00:15,025 checking for style of include used by make... GNU 2025-09-08T09:00:15,185 checking dependency style of g++... gcc3 2025-09-08T09:00:15,188 checking for gcc... gcc 2025-09-08T09:00:15,373 checking whether we are using the GNU C compiler... yes 2025-09-08T09:00:15,454 checking whether gcc accepts -g... yes 2025-09-08T09:00:15,558 checking for gcc option to accept ISO C89... none needed 2025-09-08T09:00:15,695 checking whether gcc understands -c and -o together... yes 2025-09-08T09:00:15,841 checking dependency style of gcc... gcc3 2025-09-08T09:00:15,844 checking for ranlib... ranlib 2025-09-08T09:00:15,976 checking how to run the C++ preprocessor... g++ -E 2025-09-08T09:00:16,118 checking for grep that handles long lines and -e... /usr/bin/grep 2025-09-08T09:00:16,125 checking for egrep... /usr/bin/grep -E 2025-09-08T09:00:16,691 checking for ANSI C header files... yes 2025-09-08T09:00:16,839 checking for sys/types.h... yes 2025-09-08T09:00:17,018 checking for sys/stat.h... yes 2025-09-08T09:00:17,199 checking for stdlib.h... yes 2025-09-08T09:00:17,383 checking for string.h... yes 2025-09-08T09:00:17,578 checking for memory.h... yes 2025-09-08T09:00:17,769 checking for strings.h... yes 2025-09-08T09:00:17,965 checking for inttypes.h... yes 2025-09-08T09:00:18,159 checking for stdint.h... yes 2025-09-08T09:00:18,365 checking for unistd.h... yes 2025-09-08T09:00:18,568 checking zlib.h usability... yes 2025-09-08T09:00:18,654 checking zlib.h presence... yes 2025-09-08T09:00:18,654 checking for zlib.h... yes 2025-09-08T09:00:19,167 checking for library containing gzopen... -lz 2025-09-08T09:00:19,413 checking for library containing clock_gettime... none required 2025-09-08T09:00:19,487 checking that generated files are newer than configure... done 2025-09-08T09:00:19,488 configure: creating ./config.status 2025-09-08T09:00:19,873 config.status: creating Makefile 2025-09-08T09:00:19,928 config.status: creating src/Makefile 2025-09-08T09:00:20,004 config.status: creating src/seqtools/Makefile 2025-09-08T09:00:20,078 config.status: creating config.h 2025-09-08T09:00:20,123 config.status: executing depfiles commands 2025-09-08T09:00:20,518 Running command: make 2025-09-08T09:00:20,549 make all-recursive 2025-09-08T09:00:20,567 make[1]: Entering directory '/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/lib/SeqLib' 2025-09-08T09:00:20,589 Making all in bwa 2025-09-08T09:00:20,598 make[2]: Entering directory '/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/lib/SeqLib/bwa' 2025-09-08T09:00:20,607 gcc -c -g -Wall -Wno-unused-function -O2 -fPIC -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS utils.c -o utils.o 2025-09-08T09:00:22,422 gcc -c -g -Wall -Wno-unused-function -O2 -fPIC -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS kthread.c -o kthread.o 2025-09-08T09:00:22,739 gcc -c -g -Wall -Wno-unused-function -O2 -fPIC -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS ksw.c -o ksw.o 2025-09-08T09:00:22,815 ksw.c:29:10: fatal error: emmintrin.h: No such file or directory 2025-09-08T09:00:22,815 29 | #include 2025-09-08T09:00:22,815 | ^~~~~~~~~~~~~ 2025-09-08T09:00:22,816 compilation terminated. 2025-09-08T09:00:22,817 make[2]: *** [Makefile:26: ksw.o] Error 1 2025-09-08T09:00:22,818 make[2]: Leaving directory '/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/lib/SeqLib/bwa' 2025-09-08T09:00:22,819 make[1]: *** [Makefile:358: all-recursive] Error 1 2025-09-08T09:00:22,819 make[1]: Leaving directory '/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/lib/SeqLib' 2025-09-08T09:00:22,819 make: *** [Makefile:299: all] Error 2 2025-09-08T09:00:22,831 Traceback (most recent call last): 2025-09-08T09:00:22,840 File "", line 2, in 2025-09-08T09:00:22,840 exec(compile(''' 2025-09-08T09:00:22,840 ~~~~^^^^^^^^^^^^ 2025-09-08T09:00:22,840 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:00:22,840 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:00:22,841 ...<32 lines>... 2025-09-08T09:00:22,841 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:00:22,841 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:00:22,841 ''' % ('/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/setup.py',), "", "exec")) 2025-09-08T09:00:22,841 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:00:22,841 File "", line 35, in 2025-09-08T09:00:22,841 File "/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/setup.py", line 212, in 2025-09-08T09:00:22,842 setup( 2025-09-08T09:00:22,842 ~~~~~^ 2025-09-08T09:00:22,842 name='seqlib', 2025-09-08T09:00:22,842 ^^^^^^^^^^^^^^ 2025-09-08T09:00:22,842 ...<10 lines>... 2025-09-08T09:00:22,842 zip_safe=False, 2025-09-08T09:00:22,842 ^^^^^^^^^^^^^^^ 2025-09-08T09:00:22,842 ) 2025-09-08T09:00:22,843 ^ 2025-09-08T09:00:22,843 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T09:00:22,843 return distutils.core.setup(**attrs) 2025-09-08T09:00:22,843 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:00:22,843 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T09:00:22,843 return run_commands(dist) 2025-09-08T09:00:22,843 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T09:00:22,843 dist.run_commands() 2025-09-08T09:00:22,844 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:00:22,844 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T09:00:22,844 self.run_command(cmd) 2025-09-08T09:00:22,844 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T09:00:22,844 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:00:22,844 super().run_command(command) 2025-09-08T09:00:22,844 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:00:22,844 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:00:22,845 cmd_obj.run() 2025-09-08T09:00:22,845 ~~~~~~~~~~~^^ 2025-09-08T09:00:22,845 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T09:00:22,845 self.run_command("build") 2025-09-08T09:00:22,845 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:00:22,845 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T09:00:22,845 self.distribution.run_command(command) 2025-09-08T09:00:22,845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:00:22,846 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:00:22,846 super().run_command(command) 2025-09-08T09:00:22,846 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:00:22,846 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:00:22,846 cmd_obj.run() 2025-09-08T09:00:22,846 ~~~~~~~~~~~^^ 2025-09-08T09:00:22,846 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T09:00:22,847 self.run_command(cmd_name) 2025-09-08T09:00:22,847 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T09:00:22,847 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T09:00:22,847 self.distribution.run_command(command) 2025-09-08T09:00:22,847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:00:22,847 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:00:22,847 super().run_command(command) 2025-09-08T09:00:22,847 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:00:22,848 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:00:22,848 cmd_obj.run() 2025-09-08T09:00:22,848 ~~~~~~~~~~~^^ 2025-09-08T09:00:22,848 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/build_ext.py", line 96, in run 2025-09-08T09:00:22,848 _build_ext.run(self) 2025-09-08T09:00:22,848 ~~~~~~~~~~~~~~^^^^^^ 2025-09-08T09:00:22,848 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-08T09:00:22,848 self.build_extensions() 2025-09-08T09:00:22,849 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:00:22,849 File "/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/setup.py", line 152, in build_extensions 2025-09-08T09:00:22,849 build_ext.build_extensions(self) 2025-09-08T09:00:22,849 ~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^ 2025-09-08T09:00:22,849 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-08T09:00:22,849 self._build_extensions_serial() 2025-09-08T09:00:22,849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:00:22,850 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-08T09:00:22,850 self.build_extension(ext) 2025-09-08T09:00:22,850 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T09:00:22,850 File "/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/setup.py", line 157, in build_extension 2025-09-08T09:00:22,850 compile_seqlib() 2025-09-08T09:00:22,850 ~~~~~~~~~~~~~~^^ 2025-09-08T09:00:22,851 File "/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/setup.py", line 74, in compile_seqlib 2025-09-08T09:00:22,851 check_call("make") 2025-09-08T09:00:22,851 ~~~~~~~~~~^^^^^^^^ 2025-09-08T09:00:22,851 File "/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/setup.py", line 26, in check_call 2025-09-08T09:00:22,851 subprocess.check_call(command, shell=True) 2025-09-08T09:00:22,851 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:00:22,851 File "/usr/lib/python3.13/subprocess.py", line 419, in check_call 2025-09-08T09:00:22,851 raise CalledProcessError(retcode, cmd) 2025-09-08T09:00:22,852 subprocess.CalledProcessError: Command 'make' returned non-zero exit status 2. 2025-09-08T09:00:22,957 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T09:00:22,969 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T09:00:22,969 exec(compile('"'"''"'"''"'"' 2025-09-08T09:00:22,969 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:00:22,969 # 2025-09-08T09:00:22,969 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T09:00:22,969 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T09:00:22,969 # - It provides a clear error message when setuptools is not installed. 2025-09-08T09:00:22,969 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T09:00:22,969 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T09:00:22,969 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T09:00:22,969 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T09:00:22,969 import os, sys, tokenize, traceback 2025-09-08T09:00:22,969 2025-09-08T09:00:22,969 try: 2025-09-08T09:00:22,969 import setuptools 2025-09-08T09:00:22,969 except ImportError: 2025-09-08T09:00:22,969 print( 2025-09-08T09:00:22,969 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T09:00:22,969 "the build environment with exception:", 2025-09-08T09:00:22,969 file=sys.stderr, 2025-09-08T09:00:22,969 ) 2025-09-08T09:00:22,969 traceback.print_exc() 2025-09-08T09:00:22,969 sys.exit(1) 2025-09-08T09:00:22,969 2025-09-08T09:00:22,969 __file__ = %r 2025-09-08T09:00:22,969 sys.argv[0] = __file__ 2025-09-08T09:00:22,969 2025-09-08T09:00:22,969 if os.path.exists(__file__): 2025-09-08T09:00:22,969 filename = __file__ 2025-09-08T09:00:22,969 with tokenize.open(__file__) as f: 2025-09-08T09:00:22,969 setup_py_code = f.read() 2025-09-08T09:00:22,969 else: 2025-09-08T09:00:22,969 filename = "" 2025-09-08T09:00:22,969 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T09:00:22,969 2025-09-08T09:00:22,969 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:00:22,969 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-ahkhm2aj[/] 2025-09-08T09:00:22,970 [bold magenta]cwd[/]: /tmp/pip-wheel-axr92_px/seqlib_8499e642ae3345319ae370527fa2c0d1/ 2025-09-08T09:00:22,970 Building wheel for seqlib (setup.py): finished with status 'error' 2025-09-08T09:00:22,971 ERROR: Failed building wheel for seqlib 2025-09-08T09:00:22,971 Running setup.py clean for seqlib 2025-09-08T09:00:22,972 Running command python setup.py clean 2025-09-08T09:00:24,105 running clean 2025-09-08T09:00:24,248 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T09:00:24,249 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T09:00:24,249 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T09:00:24,249 removing 'build' 2025-09-08T09:00:24,360 Failed to build seqlib 2025-09-08T09:00:24,361 ERROR: Failed to build one or more wheels 2025-09-08T09:00:24,362 Exception information: 2025-09-08T09:00:24,362 Traceback (most recent call last): 2025-09-08T09:00:24,362 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T09:00:24,362 status = _inner_run() 2025-09-08T09:00:24,362 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T09:00:24,362 return self.run(options, args) 2025-09-08T09:00:24,362 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T09:00:24,362 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T09:00:24,362 return func(self, options, args) 2025-09-08T09:00:24,362 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T09:00:24,362 raise CommandError("Failed to build one or more wheels") 2025-09-08T09:00:24,362 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T09:00:24,366 Removed build tracker: '/tmp/pip-build-tracker-04r8gq67'