2025-09-08T09:01:49,126 Created temporary directory: /tmp/pip-build-tracker-na4mik1r 2025-09-08T09:01:49,126 Initialized build tracking at /tmp/pip-build-tracker-na4mik1r 2025-09-08T09:01:49,126 Created build tracker: /tmp/pip-build-tracker-na4mik1r 2025-09-08T09:01:49,127 Entered build tracker: /tmp/pip-build-tracker-na4mik1r 2025-09-08T09:01:49,127 Created temporary directory: /tmp/pip-wheel-024uv2le 2025-09-08T09:01:49,130 Created temporary directory: /tmp/pip-ephem-wheel-cache-62k6e0tt 2025-09-08T09:01:49,190 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T09:01:49,192 2 location(s) to search for versions of seqanpy: 2025-09-08T09:01:49,192 * https://pypi.org/simple/seqanpy/ 2025-09-08T09:01:49,192 * https://www.piwheels.org/simple/seqanpy/ 2025-09-08T09:01:49,193 Fetching project page and analyzing links: https://pypi.org/simple/seqanpy/ 2025-09-08T09:01:49,193 Getting page https://pypi.org/simple/seqanpy/ 2025-09-08T09:01:49,194 Found index url https://pypi.org/simple/ 2025-09-08T09:01:49,341 Fetched page https://pypi.org/simple/seqanpy/ as application/vnd.pypi.simple.v1+json 2025-09-08T09:01:49,342 Found link https://files.pythonhosted.org/packages/e6/b3/9e480ff550f69378c8e67a8bb09c1c9413b3078a4a2208a6900286539d87/seqanpy-0.2.tar.gz (from https://pypi.org/simple/seqanpy/), version: 0.2 2025-09-08T09:01:49,343 Fetching project page and analyzing links: https://www.piwheels.org/simple/seqanpy/ 2025-09-08T09:01:49,344 Getting page https://www.piwheels.org/simple/seqanpy/ 2025-09-08T09:01:49,345 Found index url https://www.piwheels.org/simple/ 2025-09-08T09:01:49,446 Fetched page https://www.piwheels.org/simple/seqanpy/ as text/html 2025-09-08T09:01:49,447 Skipping link: not a file: https://www.piwheels.org/simple/seqanpy/ 2025-09-08T09:01:49,447 Skipping link: not a file: https://pypi.org/simple/seqanpy/ 2025-09-08T09:01:49,471 Given no hashes to check 1 links for project 'seqanpy': discarding no candidates 2025-09-08T09:01:49,472 Collecting seqanpy==0.2 2025-09-08T09:01:49,473 Created temporary directory: /tmp/pip-unpack-k1bp637w 2025-09-08T09:01:49,669 Downloading seqanpy-0.2.tar.gz (4.4 kB) 2025-09-08T09:01:49,684 Added seqanpy==0.2 from https://files.pythonhosted.org/packages/e6/b3/9e480ff550f69378c8e67a8bb09c1c9413b3078a4a2208a6900286539d87/seqanpy-0.2.tar.gz to build tracker '/tmp/pip-build-tracker-na4mik1r' 2025-09-08T09:01:49,686 Running setup.py (path:/tmp/pip-wheel-024uv2le/seqanpy_956f8534174e4a098d66a293178e1a4e/setup.py) egg_info for package seqanpy 2025-09-08T09:01:49,686 Created temporary directory: /tmp/pip-pip-egg-info-5hq0cqcj 2025-09-08T09:01:49,687 Preparing metadata (setup.py): started 2025-09-08T09:01:49,688 Running command python setup.py egg_info 2025-09-08T09:01:51,143 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T09:01:51,147 Source in /tmp/pip-wheel-024uv2le/seqanpy_956f8534174e4a098d66a293178e1a4e has version 0.2, which satisfies requirement seqanpy==0.2 from https://files.pythonhosted.org/packages/e6/b3/9e480ff550f69378c8e67a8bb09c1c9413b3078a4a2208a6900286539d87/seqanpy-0.2.tar.gz 2025-09-08T09:01:51,147 Removed seqanpy==0.2 from https://files.pythonhosted.org/packages/e6/b3/9e480ff550f69378c8e67a8bb09c1c9413b3078a4a2208a6900286539d87/seqanpy-0.2.tar.gz from build tracker '/tmp/pip-build-tracker-na4mik1r' 2025-09-08T09:01:51,150 Created temporary directory: /tmp/pip-unpack-eh6nx38p 2025-09-08T09:01:51,151 Created temporary directory: /tmp/pip-unpack-67kni89k 2025-09-08T09:01:51,151 Building wheels for collected packages: seqanpy 2025-09-08T09:01:51,152 Created temporary directory: /tmp/pip-wheel-j53qq7n9 2025-09-08T09:01:51,153 DEPRECATION: Building 'seqanpy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'seqanpy'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T09:01:51,154 Building wheel for seqanpy (setup.py): started 2025-09-08T09:01:51,155 Destination directory: /tmp/pip-wheel-j53qq7n9 2025-09-08T09:01:51,155 Running command python setup.py bdist_wheel 2025-09-08T09:01:52,519 error: SeqAn include folder NOT found. Install it and set the environment variable SEQAN_INCLUDE_PATH to the parent of the SeqAn include folder and retry. 2025-09-08T09:01:52,632 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T09:01:52,644 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T09:01:52,644 exec(compile('"'"''"'"''"'"' 2025-09-08T09:01:52,644 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:01:52,644 # 2025-09-08T09:01:52,644 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T09:01:52,644 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T09:01:52,644 # - It provides a clear error message when setuptools is not installed. 2025-09-08T09:01:52,644 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T09:01:52,644 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T09:01:52,644 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T09:01:52,644 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T09:01:52,644 import os, sys, tokenize, traceback 2025-09-08T09:01:52,644 2025-09-08T09:01:52,644 try: 2025-09-08T09:01:52,644 import setuptools 2025-09-08T09:01:52,644 except ImportError: 2025-09-08T09:01:52,644 print( 2025-09-08T09:01:52,644 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T09:01:52,644 "the build environment with exception:", 2025-09-08T09:01:52,644 file=sys.stderr, 2025-09-08T09:01:52,644 ) 2025-09-08T09:01:52,644 traceback.print_exc() 2025-09-08T09:01:52,644 sys.exit(1) 2025-09-08T09:01:52,644 2025-09-08T09:01:52,644 __file__ = %r 2025-09-08T09:01:52,644 sys.argv[0] = __file__ 2025-09-08T09:01:52,644 2025-09-08T09:01:52,644 if os.path.exists(__file__): 2025-09-08T09:01:52,644 filename = __file__ 2025-09-08T09:01:52,644 with tokenize.open(__file__) as f: 2025-09-08T09:01:52,644 setup_py_code = f.read() 2025-09-08T09:01:52,644 else: 2025-09-08T09:01:52,644 filename = "" 2025-09-08T09:01:52,644 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T09:01:52,644 2025-09-08T09:01:52,644 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:01:52,644 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-024uv2le/seqanpy_956f8534174e4a098d66a293178e1a4e/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-j53qq7n9[/] 2025-09-08T09:01:52,644 [bold magenta]cwd[/]: /tmp/pip-wheel-024uv2le/seqanpy_956f8534174e4a098d66a293178e1a4e/ 2025-09-08T09:01:52,644 Building wheel for seqanpy (setup.py): finished with status 'error' 2025-09-08T09:01:52,645 ERROR: Failed building wheel for seqanpy 2025-09-08T09:01:52,646 Running setup.py clean for seqanpy 2025-09-08T09:01:52,647 Running command python setup.py clean 2025-09-08T09:01:53,849 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T09:01:53,850 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T09:01:53,961 Failed to build seqanpy 2025-09-08T09:01:53,962 ERROR: Failed to build one or more wheels 2025-09-08T09:01:53,963 Exception information: 2025-09-08T09:01:53,963 Traceback (most recent call last): 2025-09-08T09:01:53,963 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T09:01:53,963 status = _inner_run() 2025-09-08T09:01:53,963 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T09:01:53,963 return self.run(options, args) 2025-09-08T09:01:53,963 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T09:01:53,963 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T09:01:53,963 return func(self, options, args) 2025-09-08T09:01:53,963 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T09:01:53,963 raise CommandError("Failed to build one or more wheels") 2025-09-08T09:01:53,963 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T09:01:53,967 Removed build tracker: '/tmp/pip-build-tracker-na4mik1r'