2025-09-08T09:02:39,484 Created temporary directory: /tmp/pip-build-tracker-8xowbofa 2025-09-08T09:02:39,485 Initialized build tracking at /tmp/pip-build-tracker-8xowbofa 2025-09-08T09:02:39,485 Created build tracker: /tmp/pip-build-tracker-8xowbofa 2025-09-08T09:02:39,485 Entered build tracker: /tmp/pip-build-tracker-8xowbofa 2025-09-08T09:02:39,485 Created temporary directory: /tmp/pip-wheel-jtsl2r4n 2025-09-08T09:02:39,489 Created temporary directory: /tmp/pip-ephem-wheel-cache-lbcsfjg7 2025-09-08T09:02:39,545 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T09:02:39,547 2 location(s) to search for versions of seqlib: 2025-09-08T09:02:39,547 * https://pypi.org/simple/seqlib/ 2025-09-08T09:02:39,547 * https://www.piwheels.org/simple/seqlib/ 2025-09-08T09:02:39,548 Fetching project page and analyzing links: https://pypi.org/simple/seqlib/ 2025-09-08T09:02:39,548 Getting page https://pypi.org/simple/seqlib/ 2025-09-08T09:02:39,549 Found index url https://pypi.org/simple/ 2025-09-08T09:02:39,619 Fetched page https://pypi.org/simple/seqlib/ as application/vnd.pypi.simple.v1+json 2025-09-08T09:02:39,620 Found link https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.2 2025-09-08T09:02:39,620 Found link https://files.pythonhosted.org/packages/92/c5/5e920fe60a3122bcf29e71c61e829f4282a80dd74be60fd0d0d41b199403/seqlib-0.0.3.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.3 2025-09-08T09:02:39,620 Skipping link: No binaries permitted for seqlib: https://files.pythonhosted.org/packages/f0/04/ff9d870e2c374d0fa0b8127b0ab225c241fa6cbe28cb9cc58ad901fa0dd5/seqlib-0.0.5-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/seqlib/) 2025-09-08T09:02:39,621 Found link https://files.pythonhosted.org/packages/98/24/83eecf315d536649ef65bfa3f99cf3115674f5ab46217e6a8126256d96a2/seqlib-0.0.5.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.5 2025-09-08T09:02:39,621 Skipping link: No binaries permitted for seqlib: https://files.pythonhosted.org/packages/07/06/4177555c0421661b1d3d8a6d60c25df7527a4653792f76f6077a217f9e2b/seqlib-0.0.6-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/seqlib/) 2025-09-08T09:02:39,621 Found link https://files.pythonhosted.org/packages/62/35/8b843ab21b0a4cd669088097615d2a4008d683137485825f925bb3cb753b/seqlib-0.0.6.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.6 2025-09-08T09:02:39,621 Fetching project page and analyzing links: https://www.piwheels.org/simple/seqlib/ 2025-09-08T09:02:39,622 Getting page https://www.piwheels.org/simple/seqlib/ 2025-09-08T09:02:39,622 Found index url https://www.piwheels.org/simple/ 2025-09-08T09:02:39,706 Fetched page https://www.piwheels.org/simple/seqlib/ as text/html 2025-09-08T09:02:39,707 Skipping link: not a file: https://www.piwheels.org/simple/seqlib/ 2025-09-08T09:02:39,707 Skipping link: not a file: https://pypi.org/simple/seqlib/ 2025-09-08T09:02:39,733 Given no hashes to check 1 links for project 'seqlib': discarding no candidates 2025-09-08T09:02:39,734 Collecting seqlib==0.0.6 2025-09-08T09:02:39,735 Created temporary directory: /tmp/pip-unpack-3y1n39h5 2025-09-08T09:02:39,888 Downloading seqlib-0.0.6.tar.gz (1.8 MB) 2025-09-08T09:02:40,464 Added seqlib==0.0.6 from https://files.pythonhosted.org/packages/62/35/8b843ab21b0a4cd669088097615d2a4008d683137485825f925bb3cb753b/seqlib-0.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-8xowbofa' 2025-09-08T09:02:40,465 Running setup.py (path:/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/setup.py) egg_info for package seqlib 2025-09-08T09:02:40,465 Created temporary directory: /tmp/pip-pip-egg-info-thswa037 2025-09-08T09:02:40,465 Preparing metadata (setup.py): started 2025-09-08T09:02:40,466 Running command python setup.py egg_info 2025-09-08T09:02:41,633 running egg_info 2025-09-08T09:02:41,712 creating /tmp/pip-pip-egg-info-thswa037/seqlib.egg-info 2025-09-08T09:02:41,712 writing /tmp/pip-pip-egg-info-thswa037/seqlib.egg-info/PKG-INFO 2025-09-08T09:02:41,713 writing dependency_links to /tmp/pip-pip-egg-info-thswa037/seqlib.egg-info/dependency_links.txt 2025-09-08T09:02:41,714 writing requirements to /tmp/pip-pip-egg-info-thswa037/seqlib.egg-info/requires.txt 2025-09-08T09:02:41,714 writing top-level names to /tmp/pip-pip-egg-info-thswa037/seqlib.egg-info/top_level.txt 2025-09-08T09:02:41,714 writing manifest file '/tmp/pip-pip-egg-info-thswa037/seqlib.egg-info/SOURCES.txt' 2025-09-08T09:02:41,949 reading manifest file '/tmp/pip-pip-egg-info-thswa037/seqlib.egg-info/SOURCES.txt' 2025-09-08T09:02:41,950 reading manifest template 'MANIFEST.in' 2025-09-08T09:02:41,987 writing manifest file '/tmp/pip-pip-egg-info-thswa037/seqlib.egg-info/SOURCES.txt' 2025-09-08T09:02:42,101 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T09:02:42,105 Source in /tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2 has version 0.0.6, which satisfies requirement seqlib==0.0.6 from https://files.pythonhosted.org/packages/62/35/8b843ab21b0a4cd669088097615d2a4008d683137485825f925bb3cb753b/seqlib-0.0.6.tar.gz 2025-09-08T09:02:42,105 Removed seqlib==0.0.6 from https://files.pythonhosted.org/packages/62/35/8b843ab21b0a4cd669088097615d2a4008d683137485825f925bb3cb753b/seqlib-0.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-8xowbofa' 2025-09-08T09:02:42,109 Created temporary directory: /tmp/pip-unpack-e9p7v1xz 2025-09-08T09:02:42,109 Created temporary directory: /tmp/pip-unpack-ltg15959 2025-09-08T09:02:42,109 Building wheels for collected packages: seqlib 2025-09-08T09:02:42,110 Created temporary directory: /tmp/pip-wheel-4s9c_pvm 2025-09-08T09:02:42,111 DEPRECATION: Building 'seqlib' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'seqlib'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T09:02:42,112 Building wheel for seqlib (setup.py): started 2025-09-08T09:02:42,112 Destination directory: /tmp/pip-wheel-4s9c_pvm 2025-09-08T09:02:42,113 Running command python setup.py bdist_wheel 2025-09-08T09:02:43,211 running bdist_wheel 2025-09-08T09:02:43,501 running build 2025-09-08T09:02:43,501 running build_py 2025-09-08T09:02:43,579 creating build/lib.linux-armv7l-cpython-313/seqlib 2025-09-08T09:02:43,580 copying src/seqlib/__init__.py -> build/lib.linux-armv7l-cpython-313/seqlib 2025-09-08T09:02:43,581 running build_ext 2025-09-08T09:02:43,590 creating tmp 2025-09-08T09:02:43,590 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c /tmp/tmpnj80h8ti.cpp -o tmp/tmpnj80h8ti.o -std=c++14 2025-09-08T09:02:43,649 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c /tmp/tmp6gsmd8d0.cpp -o tmp/tmp6gsmd8d0.o -fvisibility=hidden 2025-09-08T09:02:43,718 Running command: ./configure CFLAGS=-fPIC CXXFLAGS=-fPIC 2025-09-08T09:02:44,192 checking for a BSD-compatible install... /usr/bin/install -c 2025-09-08T09:02:44,208 checking whether build environment is sane... yes 2025-09-08T09:02:44,238 /tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/lib/SeqLib/missing: Unknown `--is-lightweight' option 2025-09-08T09:02:44,239 Try `/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/lib/SeqLib/missing --help' for more information 2025-09-08T09:02:44,239 configure: WARNING: 'missing' script is too old or missing 2025-09-08T09:02:44,249 checking for a thread-safe mkdir -p... /usr/bin/mkdir -p 2025-09-08T09:02:44,250 checking for gawk... gawk 2025-09-08T09:02:44,277 checking whether make sets $(MAKE)... yes 2025-09-08T09:02:44,303 checking whether make supports nested variables... yes 2025-09-08T09:02:44,338 checking whether to enable maintainer-specific portions of Makefiles... no 2025-09-08T09:02:44,340 checking for g++... g++ 2025-09-08T09:02:44,678 checking whether the C++ compiler works... yes 2025-09-08T09:02:44,679 checking for C++ compiler default output file name... a.out 2025-09-08T09:02:44,906 checking for suffix of executables... 2025-09-08T09:02:45,163 checking whether we are cross compiling... no 2025-09-08T09:02:45,254 checking for suffix of object files... o 2025-09-08T09:02:45,339 checking whether we are using the GNU C++ compiler... yes 2025-09-08T09:02:45,422 checking whether g++ accepts -g... yes 2025-09-08T09:02:45,438 checking for style of include used by make... GNU 2025-09-08T09:02:45,598 checking dependency style of g++... gcc3 2025-09-08T09:02:45,601 checking for gcc... gcc 2025-09-08T09:02:45,781 checking whether we are using the GNU C compiler... yes 2025-09-08T09:02:45,860 checking whether gcc accepts -g... yes 2025-09-08T09:02:45,970 checking for gcc option to accept ISO C89... none needed 2025-09-08T09:02:46,111 checking whether gcc understands -c and -o together... yes 2025-09-08T09:02:46,255 checking dependency style of gcc... gcc3 2025-09-08T09:02:46,257 checking for ranlib... ranlib 2025-09-08T09:02:46,388 checking how to run the C++ preprocessor... g++ -E 2025-09-08T09:02:46,536 checking for grep that handles long lines and -e... /usr/bin/grep 2025-09-08T09:02:46,543 checking for egrep... /usr/bin/grep -E 2025-09-08T09:02:47,124 checking for ANSI C header files... yes 2025-09-08T09:02:47,274 checking for sys/types.h... yes 2025-09-08T09:02:47,451 checking for sys/stat.h... yes 2025-09-08T09:02:47,631 checking for stdlib.h... yes 2025-09-08T09:02:47,816 checking for string.h... yes 2025-09-08T09:02:48,007 checking for memory.h... yes 2025-09-08T09:02:48,199 checking for strings.h... yes 2025-09-08T09:02:48,392 checking for inttypes.h... yes 2025-09-08T09:02:48,585 checking for stdint.h... yes 2025-09-08T09:02:48,791 checking for unistd.h... yes 2025-09-08T09:02:49,002 checking zlib.h usability... yes 2025-09-08T09:02:49,090 checking zlib.h presence... yes 2025-09-08T09:02:49,090 checking for zlib.h... yes 2025-09-08T09:02:50,968 checking for library containing gzopen... -lz 2025-09-08T09:02:51,447 checking for library containing clock_gettime... none required 2025-09-08T09:02:51,523 checking that generated files are newer than configure... done 2025-09-08T09:02:51,524 configure: creating ./config.status 2025-09-08T09:02:51,919 config.status: creating Makefile 2025-09-08T09:02:51,978 config.status: creating src/Makefile 2025-09-08T09:02:52,056 config.status: creating src/seqtools/Makefile 2025-09-08T09:02:52,132 config.status: creating config.h 2025-09-08T09:02:52,179 config.status: executing depfiles commands 2025-09-08T09:02:52,582 Running command: make 2025-09-08T09:02:52,612 make all-recursive 2025-09-08T09:02:52,631 make[1]: Entering directory '/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/lib/SeqLib' 2025-09-08T09:02:52,654 Making all in bwa 2025-09-08T09:02:52,662 make[2]: Entering directory '/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/lib/SeqLib/bwa' 2025-09-08T09:02:52,672 gcc -c -g -Wall -Wno-unused-function -O2 -fPIC -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS utils.c -o utils.o 2025-09-08T09:02:54,492 gcc -c -g -Wall -Wno-unused-function -O2 -fPIC -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS kthread.c -o kthread.o 2025-09-08T09:02:54,809 gcc -c -g -Wall -Wno-unused-function -O2 -fPIC -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS ksw.c -o ksw.o 2025-09-08T09:02:54,885 ksw.c:29:10: fatal error: emmintrin.h: No such file or directory 2025-09-08T09:02:54,885 29 | #include 2025-09-08T09:02:54,885 | ^~~~~~~~~~~~~ 2025-09-08T09:02:54,885 compilation terminated. 2025-09-08T09:02:54,888 make[2]: *** [Makefile:26: ksw.o] Error 1 2025-09-08T09:02:54,888 make[2]: Leaving directory '/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/lib/SeqLib/bwa' 2025-09-08T09:02:54,889 make[1]: *** [Makefile:358: all-recursive] Error 1 2025-09-08T09:02:54,889 make[1]: Leaving directory '/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/lib/SeqLib' 2025-09-08T09:02:54,889 make: *** [Makefile:299: all] Error 2 2025-09-08T09:02:54,902 Traceback (most recent call last): 2025-09-08T09:02:54,913 File "", line 2, in 2025-09-08T09:02:54,913 exec(compile(''' 2025-09-08T09:02:54,913 ~~~~^^^^^^^^^^^^ 2025-09-08T09:02:54,914 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:02:54,914 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:02:54,914 ...<32 lines>... 2025-09-08T09:02:54,914 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:02:54,914 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:02:54,914 ''' % ('/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/setup.py',), "", "exec")) 2025-09-08T09:02:54,915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:02:54,915 File "", line 35, in 2025-09-08T09:02:54,915 File "/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/setup.py", line 212, in 2025-09-08T09:02:54,915 setup( 2025-09-08T09:02:54,915 ~~~~~^ 2025-09-08T09:02:54,916 name='seqlib', 2025-09-08T09:02:54,916 ^^^^^^^^^^^^^^ 2025-09-08T09:02:54,916 ...<10 lines>... 2025-09-08T09:02:54,916 zip_safe=False, 2025-09-08T09:02:54,916 ^^^^^^^^^^^^^^^ 2025-09-08T09:02:54,916 ) 2025-09-08T09:02:54,916 ^ 2025-09-08T09:02:54,917 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T09:02:54,917 return distutils.core.setup(**attrs) 2025-09-08T09:02:54,917 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:02:54,917 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T09:02:54,918 return run_commands(dist) 2025-09-08T09:02:54,918 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T09:02:54,918 dist.run_commands() 2025-09-08T09:02:54,918 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:02:54,918 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T09:02:54,918 self.run_command(cmd) 2025-09-08T09:02:54,919 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T09:02:54,919 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:02:54,919 super().run_command(command) 2025-09-08T09:02:54,919 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:02:54,919 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:02:54,919 cmd_obj.run() 2025-09-08T09:02:54,920 ~~~~~~~~~~~^^ 2025-09-08T09:02:54,920 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T09:02:54,920 self.run_command("build") 2025-09-08T09:02:54,920 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:02:54,920 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T09:02:54,920 self.distribution.run_command(command) 2025-09-08T09:02:54,921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:02:54,921 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:02:54,921 super().run_command(command) 2025-09-08T09:02:54,921 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:02:54,921 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:02:54,921 cmd_obj.run() 2025-09-08T09:02:54,922 ~~~~~~~~~~~^^ 2025-09-08T09:02:54,922 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T09:02:54,922 self.run_command(cmd_name) 2025-09-08T09:02:54,922 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T09:02:54,922 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T09:02:54,922 self.distribution.run_command(command) 2025-09-08T09:02:54,923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:02:54,923 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:02:54,923 super().run_command(command) 2025-09-08T09:02:54,923 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:02:54,923 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:02:54,924 cmd_obj.run() 2025-09-08T09:02:54,924 ~~~~~~~~~~~^^ 2025-09-08T09:02:54,924 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/build_ext.py", line 96, in run 2025-09-08T09:02:54,924 _build_ext.run(self) 2025-09-08T09:02:54,924 ~~~~~~~~~~~~~~^^^^^^ 2025-09-08T09:02:54,924 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-08T09:02:54,925 self.build_extensions() 2025-09-08T09:02:54,925 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:02:54,925 File "/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/setup.py", line 152, in build_extensions 2025-09-08T09:02:54,925 build_ext.build_extensions(self) 2025-09-08T09:02:54,925 ~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^ 2025-09-08T09:02:54,925 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-08T09:02:54,926 self._build_extensions_serial() 2025-09-08T09:02:54,926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:02:54,926 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-08T09:02:54,926 self.build_extension(ext) 2025-09-08T09:02:54,926 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T09:02:54,926 File "/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/setup.py", line 157, in build_extension 2025-09-08T09:02:54,926 compile_seqlib() 2025-09-08T09:02:54,927 ~~~~~~~~~~~~~~^^ 2025-09-08T09:02:54,927 File "/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/setup.py", line 74, in compile_seqlib 2025-09-08T09:02:54,927 check_call("make") 2025-09-08T09:02:54,927 ~~~~~~~~~~^^^^^^^^ 2025-09-08T09:02:54,927 File "/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/setup.py", line 26, in check_call 2025-09-08T09:02:54,927 subprocess.check_call(command, shell=True) 2025-09-08T09:02:54,928 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:02:54,928 File "/usr/lib/python3.13/subprocess.py", line 419, in check_call 2025-09-08T09:02:54,928 raise CalledProcessError(retcode, cmd) 2025-09-08T09:02:54,928 subprocess.CalledProcessError: Command 'make' returned non-zero exit status 2. 2025-09-08T09:02:55,034 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T09:02:55,046 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T09:02:55,046 exec(compile('"'"''"'"''"'"' 2025-09-08T09:02:55,046 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:02:55,046 # 2025-09-08T09:02:55,046 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T09:02:55,046 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T09:02:55,046 # - It provides a clear error message when setuptools is not installed. 2025-09-08T09:02:55,046 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T09:02:55,046 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T09:02:55,046 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T09:02:55,046 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T09:02:55,046 import os, sys, tokenize, traceback 2025-09-08T09:02:55,046 2025-09-08T09:02:55,046 try: 2025-09-08T09:02:55,046 import setuptools 2025-09-08T09:02:55,046 except ImportError: 2025-09-08T09:02:55,046 print( 2025-09-08T09:02:55,046 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T09:02:55,046 "the build environment with exception:", 2025-09-08T09:02:55,046 file=sys.stderr, 2025-09-08T09:02:55,046 ) 2025-09-08T09:02:55,046 traceback.print_exc() 2025-09-08T09:02:55,046 sys.exit(1) 2025-09-08T09:02:55,046 2025-09-08T09:02:55,046 __file__ = %r 2025-09-08T09:02:55,046 sys.argv[0] = __file__ 2025-09-08T09:02:55,046 2025-09-08T09:02:55,046 if os.path.exists(__file__): 2025-09-08T09:02:55,046 filename = __file__ 2025-09-08T09:02:55,046 with tokenize.open(__file__) as f: 2025-09-08T09:02:55,046 setup_py_code = f.read() 2025-09-08T09:02:55,046 else: 2025-09-08T09:02:55,046 filename = "" 2025-09-08T09:02:55,046 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T09:02:55,046 2025-09-08T09:02:55,046 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:02:55,046 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-4s9c_pvm[/] 2025-09-08T09:02:55,046 [bold magenta]cwd[/]: /tmp/pip-wheel-jtsl2r4n/seqlib_1f56d98f4bc547c5bc267135fa0acff2/ 2025-09-08T09:02:55,047 Building wheel for seqlib (setup.py): finished with status 'error' 2025-09-08T09:02:55,047 ERROR: Failed building wheel for seqlib 2025-09-08T09:02:55,048 Running setup.py clean for seqlib 2025-09-08T09:02:55,049 Running command python setup.py clean 2025-09-08T09:02:56,200 running clean 2025-09-08T09:02:56,340 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T09:02:56,341 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T09:02:56,341 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T09:02:56,341 removing 'build' 2025-09-08T09:02:56,452 Failed to build seqlib 2025-09-08T09:02:56,453 ERROR: Failed to build one or more wheels 2025-09-08T09:02:56,454 Exception information: 2025-09-08T09:02:56,454 Traceback (most recent call last): 2025-09-08T09:02:56,454 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T09:02:56,454 status = _inner_run() 2025-09-08T09:02:56,454 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T09:02:56,454 return self.run(options, args) 2025-09-08T09:02:56,454 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T09:02:56,454 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T09:02:56,454 return func(self, options, args) 2025-09-08T09:02:56,454 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T09:02:56,454 raise CommandError("Failed to build one or more wheels") 2025-09-08T09:02:56,454 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T09:02:56,458 Removed build tracker: '/tmp/pip-build-tracker-8xowbofa'