2025-09-08T09:05:16,736 Created temporary directory: /tmp/pip-build-tracker-lanj3o5h 2025-09-08T09:05:16,736 Initialized build tracking at /tmp/pip-build-tracker-lanj3o5h 2025-09-08T09:05:16,736 Created build tracker: /tmp/pip-build-tracker-lanj3o5h 2025-09-08T09:05:16,737 Entered build tracker: /tmp/pip-build-tracker-lanj3o5h 2025-09-08T09:05:16,737 Created temporary directory: /tmp/pip-wheel-1_5hdet_ 2025-09-08T09:05:16,740 Created temporary directory: /tmp/pip-ephem-wheel-cache-zk3v0aw5 2025-09-08T09:05:16,797 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T09:05:16,799 2 location(s) to search for versions of yaff: 2025-09-08T09:05:16,799 * https://pypi.org/simple/yaff/ 2025-09-08T09:05:16,799 * https://www.piwheels.org/simple/yaff/ 2025-09-08T09:05:16,800 Fetching project page and analyzing links: https://pypi.org/simple/yaff/ 2025-09-08T09:05:16,800 Getting page https://pypi.org/simple/yaff/ 2025-09-08T09:05:16,801 Found index url https://pypi.org/simple/ 2025-09-08T09:05:16,947 Fetched page https://pypi.org/simple/yaff/ as application/vnd.pypi.simple.v1+json 2025-09-08T09:05:16,949 Found link https://files.pythonhosted.org/packages/c9/f2/047512dde0eb54740406d6a712e96dc03731293ea4cd729be862bf81b6e4/yaff-1.2.0.tar.gz (from https://pypi.org/simple/yaff/), version: 1.2.0 2025-09-08T09:05:16,950 Found link https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz (from https://pypi.org/simple/yaff/), version: 1.3.0 2025-09-08T09:05:16,951 Found link https://files.pythonhosted.org/packages/18/d1/80fd22fb23b0991a9f09a7efc0f163d764205bac1eaed4fa6b322a6f7482/yaff-1.4.0.tar.gz (from https://pypi.org/simple/yaff/), version: 1.4.0 2025-09-08T09:05:16,951 Found link https://files.pythonhosted.org/packages/10/fd/8c080b0443c8d200c4dd06378adc1a6877c31c2ecf6f4a41c9be8c73d8a0/yaff-1.4.1.tar.gz (from https://pypi.org/simple/yaff/), version: 1.4.1 2025-09-08T09:05:16,952 Found link https://files.pythonhosted.org/packages/3f/21/6269a78287d1b3efce078e0f81566a9e5d2106655a35b83cc2b35eab69e7/yaff-1.4.2.tar.gz (from https://pypi.org/simple/yaff/), version: 1.4.2 2025-09-08T09:05:16,952 Fetching project page and analyzing links: https://www.piwheels.org/simple/yaff/ 2025-09-08T09:05:16,953 Getting page https://www.piwheels.org/simple/yaff/ 2025-09-08T09:05:16,955 Found index url https://www.piwheels.org/simple/ 2025-09-08T09:05:17,052 Fetched page https://www.piwheels.org/simple/yaff/ as text/html 2025-09-08T09:05:17,059 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp35-cp35m-linux_armv7l.whl#sha256=05eeae8318b3bf4a5161fdecb47dc62633b3977a877445f48901fba4d349fa94 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,059 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp35-cp35m-linux_armv6l.whl#sha256=05eeae8318b3bf4a5161fdecb47dc62633b3977a877445f48901fba4d349fa94 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,060 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp37-cp37m-linux_armv6l.whl#sha256=34b102088d7f75b099d713c83f48230bad7356bda4047a4970465151b3d3045d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,060 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp37-cp37m-linux_armv7l.whl#sha256=34b102088d7f75b099d713c83f48230bad7356bda4047a4970465151b3d3045d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,060 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp39-cp39-linux_armv6l.whl#sha256=9b0058e42bbfc37e4e09b5e25437de94436624c799a0915e1c7fac3195c2ad09 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,060 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp39-cp39-linux_armv7l.whl#sha256=9b0058e42bbfc37e4e09b5e25437de94436624c799a0915e1c7fac3195c2ad09 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,060 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp37-cp37m-linux_armv7l.whl#sha256=ee39b976fef8e83eaebb43b270fcc7fe279dcae59a1afe3fb071231c58a3f73d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,060 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp37-cp37m-linux_armv6l.whl#sha256=ee39b976fef8e83eaebb43b270fcc7fe279dcae59a1afe3fb071231c58a3f73d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,060 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp35-cp35m-linux_armv7l.whl#sha256=2299cea4af208ca4f7fe708aedf1580770206c4ef50adddf03bc79243770b251 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,061 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp35-cp35m-linux_armv6l.whl#sha256=2299cea4af208ca4f7fe708aedf1580770206c4ef50adddf03bc79243770b251 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,061 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp39-cp39-linux_armv6l.whl#sha256=32dd02a0a69308ed168af1cefa72335d7eec599ada71910d97ea22b17dfd4703 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,061 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp39-cp39-linux_armv7l.whl#sha256=32dd02a0a69308ed168af1cefa72335d7eec599ada71910d97ea22b17dfd4703 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,061 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp37-cp37m-linux_armv7l.whl#sha256=2ea621f98879ef71738a38a79c95c9f10f4f49cf4e3d791c9f6dfe60ddaf1e02 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,061 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp37-cp37m-linux_armv6l.whl#sha256=2ea621f98879ef71738a38a79c95c9f10f4f49cf4e3d791c9f6dfe60ddaf1e02 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,061 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp39-cp39-linux_armv6l.whl#sha256=791724fa64558c54f8b3181c8b84bc2540c74f788528493ae829a996173c200c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,062 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp39-cp39-linux_armv7l.whl#sha256=791724fa64558c54f8b3181c8b84bc2540c74f788528493ae829a996173c200c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,062 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp37-cp37m-linux_armv6l.whl#sha256=321de664d883048ebdcc2058ac271776c195e16e3ccd52b5c99a3efb06ddfe36 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,062 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp37-cp37m-linux_armv7l.whl#sha256=321de664d883048ebdcc2058ac271776c195e16e3ccd52b5c99a3efb06ddfe36 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,062 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp35-cp35m-linux_armv7l.whl#sha256=fd1021a4087710d708884595b480e84cabb77750568fc9624d0967670c7c7cce (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,062 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp35-cp35m-linux_armv6l.whl#sha256=fd1021a4087710d708884595b480e84cabb77750568fc9624d0967670c7c7cce (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,062 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp39-cp39-linux_armv6l.whl#sha256=b7d58b67c3e944f93f1d908241a4438f074f69a0aecb3624519814faa0e9132c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,062 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp39-cp39-linux_armv7l.whl#sha256=b7d58b67c3e944f93f1d908241a4438f074f69a0aecb3624519814faa0e9132c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,063 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp37-cp37m-linux_armv6l.whl#sha256=7fd5902f3f017a76bce6f931cf1f474dc3220aa18e663b8060e578b7ef94907a (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,063 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp37-cp37m-linux_armv7l.whl#sha256=7fd5902f3f017a76bce6f931cf1f474dc3220aa18e663b8060e578b7ef94907a (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,063 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp35-cp35m-linux_armv6l.whl#sha256=0e866c86ae0c7d8de5f473f7d81042a6f686c00ccb586ff5349ecdd5eb147303 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,063 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp35-cp35m-linux_armv7l.whl#sha256=0e866c86ae0c7d8de5f473f7d81042a6f686c00ccb586ff5349ecdd5eb147303 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,063 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp39-cp39-linux_armv6l.whl#sha256=a0834da5b114cd8972c0201df0b08bd9b2b7c81fe36ccadd1e2427262b85f8c6 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,063 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp39-cp39-linux_armv7l.whl#sha256=a0834da5b114cd8972c0201df0b08bd9b2b7c81fe36ccadd1e2427262b85f8c6 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:05:17,064 Skipping link: not a file: https://www.piwheels.org/simple/yaff/ 2025-09-08T09:05:17,064 Skipping link: not a file: https://pypi.org/simple/yaff/ 2025-09-08T09:05:17,088 Given no hashes to check 1 links for project 'yaff': discarding no candidates 2025-09-08T09:05:17,089 Collecting yaff==1.2.0 2025-09-08T09:05:17,090 Created temporary directory: /tmp/pip-unpack-xxnrwf40 2025-09-08T09:05:17,231 Downloading yaff-1.2.0.tar.gz (663 kB) 2025-09-08T09:05:17,489 Added yaff==1.2.0 from https://files.pythonhosted.org/packages/c9/f2/047512dde0eb54740406d6a712e96dc03731293ea4cd729be862bf81b6e4/yaff-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-lanj3o5h' 2025-09-08T09:05:17,490 Running setup.py (path:/tmp/pip-wheel-1_5hdet_/yaff_f382af630b554a81812a5fcc58546aa0/setup.py) egg_info for package yaff 2025-09-08T09:05:17,490 Created temporary directory: /tmp/pip-pip-egg-info-6xeyosx5 2025-09-08T09:05:17,491 Preparing metadata (setup.py): started 2025-09-08T09:05:17,491 Running command python setup.py egg_info 2025-09-08T09:05:18,408 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T09:05:18,408 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T09:05:18,592 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T09:05:18,593 !! 2025-09-08T09:05:18,593 ******************************************************************************** 2025-09-08T09:05:18,593 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T09:05:18,593 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T09:05:18,593 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T09:05:18,593 or your builds will no longer be supported. 2025-09-08T09:05:18,593 ******************************************************************************** 2025-09-08T09:05:18,594 !! 2025-09-08T09:05:18,594 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T09:05:18,969 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:05:18,969 !! 2025-09-08T09:05:18,970 ******************************************************************************** 2025-09-08T09:05:18,970 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:05:18,970 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-09-08T09:05:18,970 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:05:18,970 ******************************************************************************** 2025-09-08T09:05:18,970 !! 2025-09-08T09:05:18,970 self._finalize_license_expression() 2025-09-08T09:05:19,046 running egg_info 2025-09-08T09:05:19,122 creating /tmp/pip-pip-egg-info-6xeyosx5/yaff.egg-info 2025-09-08T09:05:19,122 writing /tmp/pip-pip-egg-info-6xeyosx5/yaff.egg-info/PKG-INFO 2025-09-08T09:05:19,123 writing dependency_links to /tmp/pip-pip-egg-info-6xeyosx5/yaff.egg-info/dependency_links.txt 2025-09-08T09:05:19,124 writing requirements to /tmp/pip-pip-egg-info-6xeyosx5/yaff.egg-info/requires.txt 2025-09-08T09:05:19,124 writing top-level names to /tmp/pip-pip-egg-info-6xeyosx5/yaff.egg-info/top_level.txt 2025-09-08T09:05:19,125 writing manifest file '/tmp/pip-pip-egg-info-6xeyosx5/yaff.egg-info/SOURCES.txt' 2025-09-08T09:05:19,437 reading manifest file '/tmp/pip-pip-egg-info-6xeyosx5/yaff.egg-info/SOURCES.txt' 2025-09-08T09:05:19,438 reading manifest template 'MANIFEST.in' 2025-09-08T09:05:19,438 warning: no files found matching 'README' 2025-09-08T09:05:19,484 warning: no previously-included files matching 'ext.c' found under directory 'yaff' 2025-09-08T09:05:19,491 adding license file 'LICENSE.txt' 2025-09-08T09:05:19,499 writing manifest file '/tmp/pip-pip-egg-info-6xeyosx5/yaff.egg-info/SOURCES.txt' 2025-09-08T09:05:19,642 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T09:05:19,647 Source in /tmp/pip-wheel-1_5hdet_/yaff_f382af630b554a81812a5fcc58546aa0 has version 1.2.0, which satisfies requirement yaff==1.2.0 from https://files.pythonhosted.org/packages/c9/f2/047512dde0eb54740406d6a712e96dc03731293ea4cd729be862bf81b6e4/yaff-1.2.0.tar.gz 2025-09-08T09:05:19,647 Removed yaff==1.2.0 from https://files.pythonhosted.org/packages/c9/f2/047512dde0eb54740406d6a712e96dc03731293ea4cd729be862bf81b6e4/yaff-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-lanj3o5h' 2025-09-08T09:05:19,652 Created temporary directory: /tmp/pip-unpack-mikp2ova 2025-09-08T09:05:19,653 Created temporary directory: /tmp/pip-unpack-oiq_h1yc 2025-09-08T09:05:19,653 Building wheels for collected packages: yaff 2025-09-08T09:05:19,654 Created temporary directory: /tmp/pip-wheel-k58mdynl 2025-09-08T09:05:19,654 DEPRECATION: Building 'yaff' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'yaff'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T09:05:19,656 Building wheel for yaff (setup.py): started 2025-09-08T09:05:19,656 Destination directory: /tmp/pip-wheel-k58mdynl 2025-09-08T09:05:19,656 Running command python setup.py bdist_wheel 2025-09-08T09:05:20,570 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T09:05:20,570 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T09:05:20,691 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T09:05:20,691 !! 2025-09-08T09:05:20,691 ******************************************************************************** 2025-09-08T09:05:20,691 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T09:05:20,691 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T09:05:20,692 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T09:05:20,692 or your builds will no longer be supported. 2025-09-08T09:05:20,692 ******************************************************************************** 2025-09-08T09:05:20,692 !! 2025-09-08T09:05:20,692 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T09:05:21,068 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:05:21,068 !! 2025-09-08T09:05:21,068 ******************************************************************************** 2025-09-08T09:05:21,068 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:05:21,068 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-09-08T09:05:21,069 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:05:21,069 ******************************************************************************** 2025-09-08T09:05:21,069 !! 2025-09-08T09:05:21,069 self._finalize_license_expression() 2025-09-08T09:05:21,069 running bdist_wheel 2025-09-08T09:05:21,373 running build 2025-09-08T09:05:21,373 running build_py 2025-09-08T09:05:21,452 creating build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:05:21,452 copying yaff/version.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:05:21,453 copying yaff/system.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:05:21,454 copying yaff/log.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:05:21,454 copying yaff/atselect.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:05:21,455 copying yaff/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:05:21,456 creating build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:05:21,456 copying yaff/test/test_system.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:05:21,456 copying yaff/test/test_examples.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:05:21,457 copying yaff/test/test_atselect.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:05:21,457 copying yaff/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:05:21,458 copying yaff/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:05:21,459 creating build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,459 copying yaff/pes/vlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,460 copying yaff/pes/scaling.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,460 copying yaff/pes/parameters.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,461 copying yaff/pes/nlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,462 copying yaff/pes/iclist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,462 copying yaff/pes/generator.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,463 copying yaff/pes/ff.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,464 copying yaff/pes/dlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,464 copying yaff/pes/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,465 creating build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,465 copying yaff/pes/test/test_vlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,466 copying yaff/pes/test/test_truncation.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,467 copying yaff/pes/test/test_topology.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,467 copying yaff/pes/test/test_scaling.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,468 copying yaff/pes/test/test_pext.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,468 copying yaff/pes/test/test_parameters.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,469 copying yaff/pes/test/test_pair_pot.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,469 copying yaff/pes/test/test_nlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,470 copying yaff/pes/test/test_md.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,471 copying yaff/pes/test/test_iclist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,471 copying yaff/pes/test/test_grid.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,472 copying yaff/pes/test/test_generator.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,472 copying yaff/pes/test/test_ewald.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,473 copying yaff/pes/test/test_dlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,473 copying yaff/pes/test/test_cell.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,474 copying yaff/pes/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,474 copying yaff/pes/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:05:21,475 creating build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,476 copying yaff/sampling/verlet.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,476 copying yaff/sampling/utils.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,477 copying yaff/sampling/trajectory.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,477 copying yaff/sampling/opt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,478 copying yaff/sampling/nvt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,478 copying yaff/sampling/npt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,479 copying yaff/sampling/iterative.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,480 copying yaff/sampling/io.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,480 copying yaff/sampling/harmonic.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,481 copying yaff/sampling/dof.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,481 copying yaff/sampling/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:05:21,482 creating build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:05:21,482 copying yaff/sampling/test/test_verlet.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:05:21,483 copying yaff/sampling/test/test_utils.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:05:21,484 copying yaff/sampling/test/test_opt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:05:21,484 copying yaff/sampling/test/test_nvt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:05:21,485 copying yaff/sampling/test/test_npt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:05:21,485 copying yaff/sampling/test/test_harmonic.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:05:21,486 copying yaff/sampling/test/test_dof.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:05:21,486 copying yaff/sampling/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:05:21,487 copying yaff/sampling/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:05:21,487 creating build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:05:21,488 copying yaff/analysis/utils.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:05:21,488 copying yaff/analysis/spectrum.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:05:21,489 copying yaff/analysis/rdf.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:05:21,489 copying yaff/analysis/pca.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:05:21,490 copying yaff/analysis/hook.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:05:21,490 copying yaff/analysis/diffusion.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:05:21,491 copying yaff/analysis/blav.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:05:21,491 copying yaff/analysis/basic.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:05:21,492 copying yaff/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:05:21,493 creating build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:05:21,493 copying yaff/analysis/test/test_spectrum.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:05:21,494 copying yaff/analysis/test/test_rdf.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:05:21,494 copying yaff/analysis/test/test_diffusion.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:05:21,495 copying yaff/analysis/test/test_blav.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:05:21,495 copying yaff/analysis/test/test_basic.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:05:21,496 copying yaff/analysis/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:05:21,496 copying yaff/analysis/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:05:21,497 creating build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:05:21,497 copying yaff/tune/transform.py -> build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:05:21,498 copying yaff/tune/cost.py -> build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:05:21,498 copying yaff/tune/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:05:21,499 creating build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:05:21,499 copying yaff/tune/test/test_transform.py -> build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:05:21,500 copying yaff/tune/test/test_cost.py -> build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:05:21,500 copying yaff/tune/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:05:21,501 creating build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:05:21,501 copying yaff/conversion/xyz.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:05:21,502 copying yaff/conversion/gaussian.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:05:21,503 copying yaff/conversion/dlpoly.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:05:21,503 copying yaff/conversion/cp2k.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:05:21,504 copying yaff/conversion/common.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:05:21,504 copying yaff/conversion/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:05:21,505 creating build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:05:21,505 copying yaff/conversion/test/test_xyz.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:05:21,506 copying yaff/conversion/test/test_gaussian.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:05:21,506 copying yaff/conversion/test/test_dlpoly.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:05:21,507 copying yaff/conversion/test/test_cp2k.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:05:21,507 copying yaff/conversion/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:05:21,508 running egg_info 2025-09-08T09:05:21,584 writing yaff.egg-info/PKG-INFO 2025-09-08T09:05:21,585 writing dependency_links to yaff.egg-info/dependency_links.txt 2025-09-08T09:05:21,586 writing requirements to yaff.egg-info/requires.txt 2025-09-08T09:05:21,586 writing top-level names to yaff.egg-info/top_level.txt 2025-09-08T09:05:21,670 reading manifest file 'yaff.egg-info/SOURCES.txt' 2025-09-08T09:05:21,684 reading manifest template 'MANIFEST.in' 2025-09-08T09:05:21,684 warning: no files found matching 'README' 2025-09-08T09:05:21,731 warning: no previously-included files matching 'ext.c' found under directory 'yaff' 2025-09-08T09:05:21,738 adding license file 'LICENSE.txt' 2025-09-08T09:05:21,749 writing manifest file 'yaff.egg-info/SOURCES.txt' 2025-09-08T09:05:21,751 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'yaff.data.opttest' is absent from the `packages` configuration. 2025-09-08T09:05:21,751 !! 2025-09-08T09:05:21,752 ******************************************************************************** 2025-09-08T09:05:21,752 ############################ 2025-09-08T09:05:21,752 # Package would be ignored # 2025-09-08T09:05:21,752 ############################ 2025-09-08T09:05:21,752 Python recognizes 'yaff.data.opttest' as an importable package[^1], 2025-09-08T09:05:21,752 but it is absent from setuptools' `packages` configuration. 2025-09-08T09:05:21,752 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T09:05:21,752 package, please make sure that 'yaff.data.opttest' is explicitly added 2025-09-08T09:05:21,752 to the `packages` configuration field. 2025-09-08T09:05:21,753 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T09:05:21,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T09:05:21,753 instead of `find_packages(...)`/`find:`). 2025-09-08T09:05:21,753 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T09:05:21,753 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T09:05:21,753 If you don't want 'yaff.data.opttest' to be distributed and are 2025-09-08T09:05:21,753 already explicitly excluding 'yaff.data.opttest' via 2025-09-08T09:05:21,754 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T09:05:21,754 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T09:05:21,754 combination with a more fine grained `package-data` configuration. 2025-09-08T09:05:21,754 You can read more about "package data files" on setuptools documentation page: 2025-09-08T09:05:21,754 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T09:05:21,754 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T09:05:21,754 even if it does not contain any `.py` files. 2025-09-08T09:05:21,754 On the other hand, currently there is no concept of package data 2025-09-08T09:05:21,755 directory, all directories are treated like packages. 2025-09-08T09:05:21,755 ******************************************************************************** 2025-09-08T09:05:21,755 !! 2025-09-08T09:05:21,755 check.warn(importable) 2025-09-08T09:05:21,755 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'yaff.data.test' is absent from the `packages` configuration. 2025-09-08T09:05:21,755 !! 2025-09-08T09:05:21,755 ******************************************************************************** 2025-09-08T09:05:21,755 ############################ 2025-09-08T09:05:21,755 # Package would be ignored # 2025-09-08T09:05:21,756 ############################ 2025-09-08T09:05:21,756 Python recognizes 'yaff.data.test' as an importable package[^1], 2025-09-08T09:05:21,756 but it is absent from setuptools' `packages` configuration. 2025-09-08T09:05:21,756 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T09:05:21,756 package, please make sure that 'yaff.data.test' is explicitly added 2025-09-08T09:05:21,756 to the `packages` configuration field. 2025-09-08T09:05:21,756 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T09:05:21,756 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T09:05:21,756 instead of `find_packages(...)`/`find:`). 2025-09-08T09:05:21,757 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T09:05:21,757 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T09:05:21,757 If you don't want 'yaff.data.test' to be distributed and are 2025-09-08T09:05:21,757 already explicitly excluding 'yaff.data.test' via 2025-09-08T09:05:21,757 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T09:05:21,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T09:05:21,757 combination with a more fine grained `package-data` configuration. 2025-09-08T09:05:21,757 You can read more about "package data files" on setuptools documentation page: 2025-09-08T09:05:21,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T09:05:21,758 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T09:05:21,758 even if it does not contain any `.py` files. 2025-09-08T09:05:21,758 On the other hand, currently there is no concept of package data 2025-09-08T09:05:21,758 directory, all directories are treated like packages. 2025-09-08T09:05:21,758 ******************************************************************************** 2025-09-08T09:05:21,758 !! 2025-09-08T09:05:21,758 check.warn(importable) 2025-09-08T09:05:21,759 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'yaff.examples' is absent from the `packages` configuration. 2025-09-08T09:05:21,759 !! 2025-09-08T09:05:21,759 ******************************************************************************** 2025-09-08T09:05:21,759 ############################ 2025-09-08T09:05:21,759 # Package would be ignored # 2025-09-08T09:05:21,759 ############################ 2025-09-08T09:05:21,759 Python recognizes 'yaff.examples' as an importable package[^1], 2025-09-08T09:05:21,759 but it is absent from setuptools' `packages` configuration. 2025-09-08T09:05:21,759 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T09:05:21,760 package, please make sure that 'yaff.examples' is explicitly added 2025-09-08T09:05:21,760 to the `packages` configuration field. 2025-09-08T09:05:21,760 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T09:05:21,760 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T09:05:21,760 instead of `find_packages(...)`/`find:`). 2025-09-08T09:05:21,760 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T09:05:21,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T09:05:21,760 If you don't want 'yaff.examples' to be distributed and are 2025-09-08T09:05:21,761 already explicitly excluding 'yaff.examples' via 2025-09-08T09:05:21,761 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T09:05:21,761 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T09:05:21,761 combination with a more fine grained `package-data` configuration. 2025-09-08T09:05:21,761 You can read more about "package data files" on setuptools documentation page: 2025-09-08T09:05:21,761 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T09:05:21,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T09:05:21,762 even if it does not contain any `.py` files. 2025-09-08T09:05:21,762 On the other hand, currently there is no concept of package data 2025-09-08T09:05:21,762 directory, all directories are treated like packages. 2025-09-08T09:05:21,762 ******************************************************************************** 2025-09-08T09:05:21,762 !! 2025-09-08T09:05:21,762 check.warn(importable) 2025-09-08T09:05:21,767 creating build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,767 copying yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,768 copying yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,769 copying yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,770 copying yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,770 copying yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,771 copying yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,772 copying yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,772 copying yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,773 copying yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,773 copying yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,774 copying yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,774 copying yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,775 copying yaff/data/opttest/alpha_quartz.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,775 copying yaff/data/opttest/alpha_quartz_distorted.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,776 copying yaff/data/opttest/cases.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,777 copying yaff/data/opttest/merlonite_debug.pot -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,777 copying yaff/data/opttest/merlonite_fragment.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,778 copying yaff/data/opttest/merlonite_fragment_overbonded.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,778 copying yaff/data/opttest/water_dimer.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:05:21,779 creating build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,779 copying yaff/data/test/chloro_pos.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,780 copying yaff/data/test/chloro_vol.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,781 copying yaff/data/test/cp2k-1.ener -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,781 copying yaff/data/test/dlpoly_HISTORY_an1 -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,782 copying yaff/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,783 copying yaff/data/test/dlpoly_HISTORY_sam -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,783 copying yaff/data/test/dlpoly_HISTORY_uo -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,784 copying yaff/data/test/gaussian_sioh4_md.log -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,785 copying yaff/data/test/gaussian_sioh4_md.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,785 copying yaff/data/test/guaianolide.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,786 copying yaff/data/test/guaianolide_framework_ordered.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,786 copying yaff/data/test/nobornane.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,787 copying yaff/data/test/parameters_alkane.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,787 copying yaff/data/test/parameters_bks.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,788 copying yaff/data/test/parameters_fake_d3bj.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,788 copying yaff/data/test/parameters_fake_dampdisp1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,789 copying yaff/data/test/parameters_fake_exprep1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,789 copying yaff/data/test/parameters_fake_lj.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,790 copying yaff/data/test/parameters_fake_mm3.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,790 copying yaff/data/test/parameters_fake_qmdffrep.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,791 copying yaff/data/test/parameters_fake_torsion1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,791 copying yaff/data/test/parameters_fake_torsion2.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,792 copying yaff/data/test/parameters_formaldehyde_inversion.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,792 copying yaff/data/test/parameters_glycine_fixq.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,793 copying yaff/data/test/parameters_glycine_torsion.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,793 copying yaff/data/test/parameters_nacl.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,794 copying yaff/data/test/parameters_polyene.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,794 copying yaff/data/test/parameters_water.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,795 copying yaff/data/test/parameters_water_bendaharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,795 copying yaff/data/test/parameters_water_bendcharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,796 copying yaff/data/test/parameters_water_bondcross.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,796 copying yaff/data/test/parameters_water_bondfues.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,797 copying yaff/data/test/parameters_water_bondharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,797 copying yaff/data/test/parameters_water_cross.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,798 copying yaff/data/test/parameters_water_dampdisp1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,798 copying yaff/data/test/parameters_water_dampdisp2.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,799 copying yaff/data/test/parameters_water_exprep1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,799 copying yaff/data/test/parameters_water_exprep2.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,800 copying yaff/data/test/parameters_water_exprep3.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,800 copying yaff/data/test/parameters_water_fixq.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,801 copying yaff/data/test/parameters_water_fixq_dielectric.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,801 copying yaff/data/test/parameters_water_lj.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,802 copying yaff/data/test/parameters_water_mm3.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,802 copying yaff/data/test/parameters_water_ubharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,803 copying yaff/data/test/rhodium_complex_nobornane.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,803 copying yaff/data/test/water_hessian.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,804 copying yaff/data/test/water_trajectory.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:05:21,804 creating build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:05:21,805 copying yaff/examples/000_overview/clean.sh -> build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:05:21,805 copying yaff/examples/000_overview/parameters.txt -> build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:05:21,806 copying yaff/examples/000_overview/simulation.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:05:21,806 copying yaff/examples/000_overview/system.chk -> build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:05:21,807 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks 2025-09-08T09:05:21,807 copying yaff/examples/001_tutorial_bks/all.sh -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks 2025-09-08T09:05:21,808 copying yaff/examples/001_tutorial_bks/bks.pot -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks 2025-09-08T09:05:21,808 copying yaff/examples/001_tutorial_bks/clean.sh -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks 2025-09-08T09:05:21,809 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:05:21,809 copying yaff/examples/001_tutorial_bks/init/mksystem.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:05:21,810 copying yaff/examples/001_tutorial_bks/init/rvecs.txt -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:05:21,810 copying yaff/examples/001_tutorial_bks/init/struct.xyz -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:05:21,811 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/nvt 2025-09-08T09:05:21,811 copying yaff/examples/001_tutorial_bks/nvt/analysis.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/nvt 2025-09-08T09:05:21,811 copying yaff/examples/001_tutorial_bks/nvt/simulation.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/nvt 2025-09-08T09:05:21,812 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/opt 2025-09-08T09:05:21,812 copying yaff/examples/001_tutorial_bks/opt/analysis.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/opt 2025-09-08T09:05:21,813 copying yaff/examples/001_tutorial_bks/opt/simulation.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/opt 2025-09-08T09:05:21,813 creating build/lib.linux-armv7l-cpython-313/yaff/examples/002_external_trajectory 2025-09-08T09:05:21,813 copying yaff/examples/002_external_trajectory/clean.sh -> build/lib.linux-armv7l-cpython-313/yaff/examples/002_external_trajectory 2025-09-08T09:05:21,814 copying yaff/examples/002_external_trajectory/rdf.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/002_external_trajectory 2025-09-08T09:05:21,814 copying yaff/examples/002_external_trajectory/trajectory.xyz -> build/lib.linux-armv7l-cpython-313/yaff/examples/002_external_trajectory 2025-09-08T09:05:21,815 creating build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:05:21,815 copying yaff/examples/003_water_thermostat/clean.sh -> build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:05:21,816 copying yaff/examples/003_water_thermostat/md.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:05:21,816 copying yaff/examples/003_water_thermostat/parameters.txt -> build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:05:21,817 copying yaff/examples/003_water_thermostat/system.chk -> build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:05:21,817 creating build/lib.linux-armv7l-cpython-313/yaff/examples/999_back_propagation 2025-09-08T09:05:21,818 copying yaff/examples/999_back_propagation/bp.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/999_back_propagation 2025-09-08T09:05:21,818 copying yaff/pes/cell.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,819 copying yaff/pes/cell.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,819 copying yaff/pes/cell.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,820 copying yaff/pes/constants.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,820 copying yaff/pes/dlist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,821 copying yaff/pes/dlist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,821 copying yaff/pes/dlist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,822 copying yaff/pes/ewald.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,822 copying yaff/pes/ewald.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,823 copying yaff/pes/ewald.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,823 copying yaff/pes/ext.pyx -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,824 copying yaff/pes/grid.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,825 copying yaff/pes/grid.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,825 copying yaff/pes/grid.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,826 copying yaff/pes/iclist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,826 copying yaff/pes/iclist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,827 copying yaff/pes/iclist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,827 copying yaff/pes/nlist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,828 copying yaff/pes/nlist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,828 copying yaff/pes/nlist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,829 copying yaff/pes/pair_pot.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,830 copying yaff/pes/pair_pot.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,830 copying yaff/pes/pair_pot.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,831 copying yaff/pes/slater.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,831 copying yaff/pes/slater.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,832 copying yaff/pes/slater.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,832 copying yaff/pes/truncation.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,833 copying yaff/pes/truncation.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,833 copying yaff/pes/truncation.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,834 copying yaff/pes/vlist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,834 copying yaff/pes/vlist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,835 copying yaff/pes/vlist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:05:21,839 running build_ext 2025-09-08T09:05:22,338 Compiling yaff/pes/ext.pyx because it changed. 2025-09-08T09:05:22,338 [1/1] Cythonizing yaff/pes/ext.pyx 2025-09-08T09:05:24,182 Error compiling Cython file: 2025-09-08T09:05:24,182 ------------------------------------------------------------ 2025-09-08T09:05:24,182 ... 2025-09-08T09:05:24,182 ''' 2025-09-08T09:05:24,182 import numpy as np 2025-09-08T09:05:24,182 cimport numpy as np 2025-09-08T09:05:24,182 cimport cell 2025-09-08T09:05:24,183 ^ 2025-09-08T09:05:24,183 ------------------------------------------------------------ 2025-09-08T09:05:24,183 yaff/pes/ext.pyx:34:8: 'cell.pxd' not found 2025-09-08T09:05:24,215 Error compiling Cython file: 2025-09-08T09:05:24,216 ------------------------------------------------------------ 2025-09-08T09:05:24,216 ... 2025-09-08T09:05:24,216 import numpy as np 2025-09-08T09:05:24,216 cimport numpy as np 2025-09-08T09:05:24,216 cimport cell 2025-09-08T09:05:24,216 cimport nlist 2025-09-08T09:05:24,217 ^ 2025-09-08T09:05:24,217 ------------------------------------------------------------ 2025-09-08T09:05:24,217 yaff/pes/ext.pyx:35:8: 'nlist.pxd' not found 2025-09-08T09:05:24,248 Error compiling Cython file: 2025-09-08T09:05:24,248 ------------------------------------------------------------ 2025-09-08T09:05:24,248 ... 2025-09-08T09:05:24,248 import numpy as np 2025-09-08T09:05:24,249 cimport numpy as np 2025-09-08T09:05:24,249 cimport cell 2025-09-08T09:05:24,249 cimport nlist 2025-09-08T09:05:24,249 cimport pair_pot 2025-09-08T09:05:24,249 ^ 2025-09-08T09:05:24,249 ------------------------------------------------------------ 2025-09-08T09:05:24,249 yaff/pes/ext.pyx:36:8: 'pair_pot.pxd' not found 2025-09-08T09:05:24,279 Error compiling Cython file: 2025-09-08T09:05:24,279 ------------------------------------------------------------ 2025-09-08T09:05:24,279 ... 2025-09-08T09:05:24,279 import numpy as np 2025-09-08T09:05:24,280 cimport numpy as np 2025-09-08T09:05:24,280 cimport cell 2025-09-08T09:05:24,280 cimport nlist 2025-09-08T09:05:24,280 cimport pair_pot 2025-09-08T09:05:24,280 cimport ewald 2025-09-08T09:05:24,280 ^ 2025-09-08T09:05:24,280 ------------------------------------------------------------ 2025-09-08T09:05:24,280 yaff/pes/ext.pyx:37:8: 'ewald.pxd' not found 2025-09-08T09:05:24,310 Error compiling Cython file: 2025-09-08T09:05:24,310 ------------------------------------------------------------ 2025-09-08T09:05:24,310 ... 2025-09-08T09:05:24,310 cimport numpy as np 2025-09-08T09:05:24,310 cimport cell 2025-09-08T09:05:24,310 cimport nlist 2025-09-08T09:05:24,310 cimport pair_pot 2025-09-08T09:05:24,310 cimport ewald 2025-09-08T09:05:24,310 cimport dlist 2025-09-08T09:05:24,311 ^ 2025-09-08T09:05:24,311 ------------------------------------------------------------ 2025-09-08T09:05:24,311 yaff/pes/ext.pyx:38:8: 'dlist.pxd' not found 2025-09-08T09:05:24,341 Error compiling Cython file: 2025-09-08T09:05:24,341 ------------------------------------------------------------ 2025-09-08T09:05:24,341 ... 2025-09-08T09:05:24,341 cimport cell 2025-09-08T09:05:24,341 cimport nlist 2025-09-08T09:05:24,342 cimport pair_pot 2025-09-08T09:05:24,342 cimport ewald 2025-09-08T09:05:24,342 cimport dlist 2025-09-08T09:05:24,342 cimport iclist 2025-09-08T09:05:24,342 ^ 2025-09-08T09:05:24,342 ------------------------------------------------------------ 2025-09-08T09:05:24,342 yaff/pes/ext.pyx:39:8: 'iclist.pxd' not found 2025-09-08T09:05:24,372 Error compiling Cython file: 2025-09-08T09:05:24,372 ------------------------------------------------------------ 2025-09-08T09:05:24,372 ... 2025-09-08T09:05:24,372 cimport nlist 2025-09-08T09:05:24,373 cimport pair_pot 2025-09-08T09:05:24,373 cimport ewald 2025-09-08T09:05:24,373 cimport dlist 2025-09-08T09:05:24,373 cimport iclist 2025-09-08T09:05:24,373 cimport vlist 2025-09-08T09:05:24,373 ^ 2025-09-08T09:05:24,373 ------------------------------------------------------------ 2025-09-08T09:05:24,374 yaff/pes/ext.pyx:40:8: 'vlist.pxd' not found 2025-09-08T09:05:24,403 Error compiling Cython file: 2025-09-08T09:05:24,403 ------------------------------------------------------------ 2025-09-08T09:05:24,403 ... 2025-09-08T09:05:24,403 cimport pair_pot 2025-09-08T09:05:24,404 cimport ewald 2025-09-08T09:05:24,404 cimport dlist 2025-09-08T09:05:24,404 cimport iclist 2025-09-08T09:05:24,404 cimport vlist 2025-09-08T09:05:24,404 cimport truncation 2025-09-08T09:05:24,404 ^ 2025-09-08T09:05:24,404 ------------------------------------------------------------ 2025-09-08T09:05:24,404 yaff/pes/ext.pyx:41:8: 'truncation.pxd' not found 2025-09-08T09:05:24,435 Error compiling Cython file: 2025-09-08T09:05:24,435 ------------------------------------------------------------ 2025-09-08T09:05:24,435 ... 2025-09-08T09:05:24,435 cimport ewald 2025-09-08T09:05:24,435 cimport dlist 2025-09-08T09:05:24,435 cimport iclist 2025-09-08T09:05:24,435 cimport vlist 2025-09-08T09:05:24,436 cimport truncation 2025-09-08T09:05:24,436 cimport grid 2025-09-08T09:05:24,436 ^ 2025-09-08T09:05:24,436 ------------------------------------------------------------ 2025-09-08T09:05:24,436 yaff/pes/ext.pyx:42:8: 'grid.pxd' not found 2025-09-08T09:05:24,436 Error compiling Cython file: 2025-09-08T09:05:24,436 ------------------------------------------------------------ 2025-09-08T09:05:24,437 ... 2025-09-08T09:05:24,437 '''Representation of periodic boundary conditions. 2025-09-08T09:05:24,437 0, 1, 2 and 3 dimensional systems are supported. The cell vectors need 2025-09-08T09:05:24,437 not to be orthogonal. 2025-09-08T09:05:24,437 ''' 2025-09-08T09:05:24,437 cdef cell.cell_type* _c_cell 2025-09-08T09:05:24,437 ^ 2025-09-08T09:05:24,437 ------------------------------------------------------------ 2025-09-08T09:05:24,438 yaff/pes/ext.pyx:71:9: 'cell_type' is not a type identifier 2025-09-08T09:05:24,442 Error compiling Cython file: 2025-09-08T09:05:24,442 ------------------------------------------------------------ 2025-09-08T09:05:24,442 ... 2025-09-08T09:05:24,442 def nlist_build(np.ndarray[double, ndim=2] pos, double rcut, 2025-09-08T09:05:24,442 np.ndarray[long, ndim=1] rmax, 2025-09-08T09:05:24,442 Cell unitcell, np.ndarray[long, ndim=1] status, 2025-09-08T09:05:24,442 np.ndarray[nlist.neigh_row_type, ndim=1] neighs): 2025-09-08T09:05:24,443 ^ 2025-09-08T09:05:24,443 ------------------------------------------------------------ 2025-09-08T09:05:24,443 yaff/pes/ext.pyx:367:33: Invalid type. 2025-09-08T09:05:24,462 Traceback (most recent call last): 2025-09-08T09:05:24,470 File "", line 2, in 2025-09-08T09:05:24,471 exec(compile(''' 2025-09-08T09:05:24,471 ~~~~^^^^^^^^^^^^ 2025-09-08T09:05:24,471 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:05:24,471 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:05:24,471 ...<32 lines>... 2025-09-08T09:05:24,471 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:05:24,471 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:05:24,471 ''' % ('/tmp/pip-wheel-1_5hdet_/yaff_f382af630b554a81812a5fcc58546aa0/setup.py',), "", "exec")) 2025-09-08T09:05:24,471 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:05:24,472 File "", line 35, in 2025-09-08T09:05:24,472 File "/tmp/pip-wheel-1_5hdet_/yaff_f382af630b554a81812a5fcc58546aa0/setup.py", line 69, in 2025-09-08T09:05:24,472 setup( 2025-09-08T09:05:24,472 ~~~~~^ 2025-09-08T09:05:24,472 name='yaff', 2025-09-08T09:05:24,472 ^^^^^^^^^^^^ 2025-09-08T09:05:24,472 ...<45 lines>... 2025-09-08T09:05:24,472 ], 2025-09-08T09:05:24,473 ^^ 2025-09-08T09:05:24,473 ) 2025-09-08T09:05:24,473 ^ 2025-09-08T09:05:24,473 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T09:05:24,473 return distutils.core.setup(**attrs) 2025-09-08T09:05:24,473 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:05:24,473 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T09:05:24,473 return run_commands(dist) 2025-09-08T09:05:24,474 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T09:05:24,474 dist.run_commands() 2025-09-08T09:05:24,474 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:05:24,474 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T09:05:24,474 self.run_command(cmd) 2025-09-08T09:05:24,474 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T09:05:24,474 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:05:24,474 super().run_command(command) 2025-09-08T09:05:24,474 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:05:24,475 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:05:24,475 cmd_obj.run() 2025-09-08T09:05:24,475 ~~~~~~~~~~~^^ 2025-09-08T09:05:24,475 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T09:05:24,475 self.run_command("build") 2025-09-08T09:05:24,475 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:05:24,475 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T09:05:24,475 self.distribution.run_command(command) 2025-09-08T09:05:24,476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:05:24,476 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:05:24,476 super().run_command(command) 2025-09-08T09:05:24,476 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:05:24,476 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:05:24,476 cmd_obj.run() 2025-09-08T09:05:24,476 ~~~~~~~~~~~^^ 2025-09-08T09:05:24,476 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T09:05:24,477 self.run_command(cmd_name) 2025-09-08T09:05:24,477 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T09:05:24,477 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T09:05:24,477 self.distribution.run_command(command) 2025-09-08T09:05:24,477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:05:24,477 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:05:24,477 super().run_command(command) 2025-09-08T09:05:24,477 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:05:24,478 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:05:24,478 cmd_obj.run() 2025-09-08T09:05:24,478 ~~~~~~~~~~~^^ 2025-09-08T09:05:24,478 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-08T09:05:24,478 self.build_extensions() 2025-09-08T09:05:24,478 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:05:24,478 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-08T09:05:24,478 self._build_extensions_serial() 2025-09-08T09:05:24,478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:05:24,479 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-08T09:05:24,479 self.build_extension(ext) 2025-09-08T09:05:24,479 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T09:05:24,479 File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension 2025-09-08T09:05:24,479 new_ext = cythonize( 2025-09-08T09:05:24,479 ~~~~~~~~~^ 2025-09-08T09:05:24,479 ext,force=self.force, quiet=self.verbose == 0, **options 2025-09-08T09:05:24,479 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:05:24,480 )[0] 2025-09-08T09:05:24,480 ^ 2025-09-08T09:05:24,480 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T09:05:24,480 cythonize_one(*args) 2025-09-08T09:05:24,480 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T09:05:24,480 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T09:05:24,480 raise CompileError(None, pyx_file) 2025-09-08T09:05:24,480 Cython.Compiler.Errors.CompileError: yaff/pes/ext.pyx 2025-09-08T09:05:24,847 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T09:05:24,860 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T09:05:24,860 exec(compile('"'"''"'"''"'"' 2025-09-08T09:05:24,860 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:05:24,860 # 2025-09-08T09:05:24,860 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T09:05:24,860 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T09:05:24,860 # - It provides a clear error message when setuptools is not installed. 2025-09-08T09:05:24,860 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T09:05:24,860 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T09:05:24,860 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T09:05:24,860 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T09:05:24,860 import os, sys, tokenize, traceback 2025-09-08T09:05:24,860 2025-09-08T09:05:24,860 try: 2025-09-08T09:05:24,860 import setuptools 2025-09-08T09:05:24,860 except ImportError: 2025-09-08T09:05:24,860 print( 2025-09-08T09:05:24,860 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T09:05:24,860 "the build environment with exception:", 2025-09-08T09:05:24,860 file=sys.stderr, 2025-09-08T09:05:24,860 ) 2025-09-08T09:05:24,860 traceback.print_exc() 2025-09-08T09:05:24,860 sys.exit(1) 2025-09-08T09:05:24,860 2025-09-08T09:05:24,860 __file__ = %r 2025-09-08T09:05:24,860 sys.argv[0] = __file__ 2025-09-08T09:05:24,860 2025-09-08T09:05:24,860 if os.path.exists(__file__): 2025-09-08T09:05:24,860 filename = __file__ 2025-09-08T09:05:24,860 with tokenize.open(__file__) as f: 2025-09-08T09:05:24,860 setup_py_code = f.read() 2025-09-08T09:05:24,860 else: 2025-09-08T09:05:24,860 filename = "" 2025-09-08T09:05:24,860 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T09:05:24,860 2025-09-08T09:05:24,860 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:05:24,860 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-1_5hdet_/yaff_f382af630b554a81812a5fcc58546aa0/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-k58mdynl[/] 2025-09-08T09:05:24,860 [bold magenta]cwd[/]: /tmp/pip-wheel-1_5hdet_/yaff_f382af630b554a81812a5fcc58546aa0/ 2025-09-08T09:05:24,860 Building wheel for yaff (setup.py): finished with status 'error' 2025-09-08T09:05:24,861 ERROR: Failed building wheel for yaff 2025-09-08T09:05:24,862 Running setup.py clean for yaff 2025-09-08T09:05:24,863 Running command python setup.py clean 2025-09-08T09:05:25,832 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T09:05:25,833 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T09:05:25,953 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T09:05:25,953 !! 2025-09-08T09:05:25,953 ******************************************************************************** 2025-09-08T09:05:25,954 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T09:05:25,954 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T09:05:25,954 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T09:05:25,954 or your builds will no longer be supported. 2025-09-08T09:05:25,954 ******************************************************************************** 2025-09-08T09:05:25,954 !! 2025-09-08T09:05:25,954 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T09:05:26,326 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:05:26,326 !! 2025-09-08T09:05:26,327 ******************************************************************************** 2025-09-08T09:05:26,327 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:05:26,327 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-09-08T09:05:26,327 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:05:26,327 ******************************************************************************** 2025-09-08T09:05:26,327 !! 2025-09-08T09:05:26,328 self._finalize_license_expression() 2025-09-08T09:05:26,402 running clean 2025-09-08T09:05:26,548 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T09:05:26,556 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T09:05:26,556 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T09:05:26,556 removing 'build' 2025-09-08T09:05:26,696 Failed to build yaff 2025-09-08T09:05:26,697 ERROR: Failed to build one or more wheels 2025-09-08T09:05:26,698 Exception information: 2025-09-08T09:05:26,698 Traceback (most recent call last): 2025-09-08T09:05:26,698 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T09:05:26,698 status = _inner_run() 2025-09-08T09:05:26,698 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T09:05:26,698 return self.run(options, args) 2025-09-08T09:05:26,698 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T09:05:26,698 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T09:05:26,698 return func(self, options, args) 2025-09-08T09:05:26,698 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T09:05:26,698 raise CommandError("Failed to build one or more wheels") 2025-09-08T09:05:26,698 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T09:05:26,702 Removed build tracker: '/tmp/pip-build-tracker-lanj3o5h'