2025-09-08T09:06:28,061 Created temporary directory: /tmp/pip-build-tracker-u6faidfc 2025-09-08T09:06:28,062 Initialized build tracking at /tmp/pip-build-tracker-u6faidfc 2025-09-08T09:06:28,062 Created build tracker: /tmp/pip-build-tracker-u6faidfc 2025-09-08T09:06:28,062 Entered build tracker: /tmp/pip-build-tracker-u6faidfc 2025-09-08T09:06:28,063 Created temporary directory: /tmp/pip-wheel-m1x1gq3d 2025-09-08T09:06:28,066 Created temporary directory: /tmp/pip-ephem-wheel-cache-7et2h7dm 2025-09-08T09:06:28,125 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T09:06:28,128 2 location(s) to search for versions of yaff: 2025-09-08T09:06:28,128 * https://pypi.org/simple/yaff/ 2025-09-08T09:06:28,128 * https://www.piwheels.org/simple/yaff/ 2025-09-08T09:06:28,128 Fetching project page and analyzing links: https://pypi.org/simple/yaff/ 2025-09-08T09:06:28,128 Getting page https://pypi.org/simple/yaff/ 2025-09-08T09:06:28,129 Found index url https://pypi.org/simple/ 2025-09-08T09:06:28,199 Fetched page https://pypi.org/simple/yaff/ as application/vnd.pypi.simple.v1+json 2025-09-08T09:06:28,200 Found link https://files.pythonhosted.org/packages/c9/f2/047512dde0eb54740406d6a712e96dc03731293ea4cd729be862bf81b6e4/yaff-1.2.0.tar.gz (from https://pypi.org/simple/yaff/), version: 1.2.0 2025-09-08T09:06:28,201 Found link https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz (from https://pypi.org/simple/yaff/), version: 1.3.0 2025-09-08T09:06:28,201 Found link https://files.pythonhosted.org/packages/18/d1/80fd22fb23b0991a9f09a7efc0f163d764205bac1eaed4fa6b322a6f7482/yaff-1.4.0.tar.gz (from https://pypi.org/simple/yaff/), version: 1.4.0 2025-09-08T09:06:28,201 Found link https://files.pythonhosted.org/packages/10/fd/8c080b0443c8d200c4dd06378adc1a6877c31c2ecf6f4a41c9be8c73d8a0/yaff-1.4.1.tar.gz (from https://pypi.org/simple/yaff/), version: 1.4.1 2025-09-08T09:06:28,201 Found link https://files.pythonhosted.org/packages/3f/21/6269a78287d1b3efce078e0f81566a9e5d2106655a35b83cc2b35eab69e7/yaff-1.4.2.tar.gz (from https://pypi.org/simple/yaff/), version: 1.4.2 2025-09-08T09:06:28,202 Fetching project page and analyzing links: https://www.piwheels.org/simple/yaff/ 2025-09-08T09:06:28,202 Getting page https://www.piwheels.org/simple/yaff/ 2025-09-08T09:06:28,203 Found index url https://www.piwheels.org/simple/ 2025-09-08T09:06:28,306 Fetched page https://www.piwheels.org/simple/yaff/ as text/html 2025-09-08T09:06:28,312 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp35-cp35m-linux_armv7l.whl#sha256=05eeae8318b3bf4a5161fdecb47dc62633b3977a877445f48901fba4d349fa94 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,313 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp35-cp35m-linux_armv6l.whl#sha256=05eeae8318b3bf4a5161fdecb47dc62633b3977a877445f48901fba4d349fa94 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,313 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp37-cp37m-linux_armv6l.whl#sha256=34b102088d7f75b099d713c83f48230bad7356bda4047a4970465151b3d3045d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,313 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp37-cp37m-linux_armv7l.whl#sha256=34b102088d7f75b099d713c83f48230bad7356bda4047a4970465151b3d3045d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,313 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp39-cp39-linux_armv6l.whl#sha256=9b0058e42bbfc37e4e09b5e25437de94436624c799a0915e1c7fac3195c2ad09 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,313 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp39-cp39-linux_armv7l.whl#sha256=9b0058e42bbfc37e4e09b5e25437de94436624c799a0915e1c7fac3195c2ad09 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,313 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp37-cp37m-linux_armv7l.whl#sha256=ee39b976fef8e83eaebb43b270fcc7fe279dcae59a1afe3fb071231c58a3f73d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,313 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp37-cp37m-linux_armv6l.whl#sha256=ee39b976fef8e83eaebb43b270fcc7fe279dcae59a1afe3fb071231c58a3f73d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,314 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp35-cp35m-linux_armv7l.whl#sha256=2299cea4af208ca4f7fe708aedf1580770206c4ef50adddf03bc79243770b251 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,314 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp35-cp35m-linux_armv6l.whl#sha256=2299cea4af208ca4f7fe708aedf1580770206c4ef50adddf03bc79243770b251 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,314 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp39-cp39-linux_armv6l.whl#sha256=32dd02a0a69308ed168af1cefa72335d7eec599ada71910d97ea22b17dfd4703 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,314 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp39-cp39-linux_armv7l.whl#sha256=32dd02a0a69308ed168af1cefa72335d7eec599ada71910d97ea22b17dfd4703 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,314 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp37-cp37m-linux_armv7l.whl#sha256=2ea621f98879ef71738a38a79c95c9f10f4f49cf4e3d791c9f6dfe60ddaf1e02 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,314 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp37-cp37m-linux_armv6l.whl#sha256=2ea621f98879ef71738a38a79c95c9f10f4f49cf4e3d791c9f6dfe60ddaf1e02 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,314 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp39-cp39-linux_armv6l.whl#sha256=791724fa64558c54f8b3181c8b84bc2540c74f788528493ae829a996173c200c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,315 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp39-cp39-linux_armv7l.whl#sha256=791724fa64558c54f8b3181c8b84bc2540c74f788528493ae829a996173c200c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,315 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp37-cp37m-linux_armv6l.whl#sha256=321de664d883048ebdcc2058ac271776c195e16e3ccd52b5c99a3efb06ddfe36 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,315 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp37-cp37m-linux_armv7l.whl#sha256=321de664d883048ebdcc2058ac271776c195e16e3ccd52b5c99a3efb06ddfe36 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,315 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp35-cp35m-linux_armv7l.whl#sha256=fd1021a4087710d708884595b480e84cabb77750568fc9624d0967670c7c7cce (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,315 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp35-cp35m-linux_armv6l.whl#sha256=fd1021a4087710d708884595b480e84cabb77750568fc9624d0967670c7c7cce (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,315 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp39-cp39-linux_armv6l.whl#sha256=b7d58b67c3e944f93f1d908241a4438f074f69a0aecb3624519814faa0e9132c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,315 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp39-cp39-linux_armv7l.whl#sha256=b7d58b67c3e944f93f1d908241a4438f074f69a0aecb3624519814faa0e9132c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,316 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp37-cp37m-linux_armv6l.whl#sha256=7fd5902f3f017a76bce6f931cf1f474dc3220aa18e663b8060e578b7ef94907a (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,316 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp37-cp37m-linux_armv7l.whl#sha256=7fd5902f3f017a76bce6f931cf1f474dc3220aa18e663b8060e578b7ef94907a (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,316 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp35-cp35m-linux_armv6l.whl#sha256=0e866c86ae0c7d8de5f473f7d81042a6f686c00ccb586ff5349ecdd5eb147303 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,316 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp35-cp35m-linux_armv7l.whl#sha256=0e866c86ae0c7d8de5f473f7d81042a6f686c00ccb586ff5349ecdd5eb147303 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,316 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp39-cp39-linux_armv6l.whl#sha256=a0834da5b114cd8972c0201df0b08bd9b2b7c81fe36ccadd1e2427262b85f8c6 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,316 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp39-cp39-linux_armv7l.whl#sha256=a0834da5b114cd8972c0201df0b08bd9b2b7c81fe36ccadd1e2427262b85f8c6 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:06:28,316 Skipping link: not a file: https://www.piwheels.org/simple/yaff/ 2025-09-08T09:06:28,317 Skipping link: not a file: https://pypi.org/simple/yaff/ 2025-09-08T09:06:28,341 Given no hashes to check 1 links for project 'yaff': discarding no candidates 2025-09-08T09:06:28,342 Collecting yaff==1.3.0 2025-09-08T09:06:28,343 Created temporary directory: /tmp/pip-unpack-6qk34skb 2025-09-08T09:06:28,487 Downloading yaff-1.3.0.tar.gz (664 kB) 2025-09-08T09:06:28,756 Added yaff==1.3.0 from https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-u6faidfc' 2025-09-08T09:06:28,757 Running setup.py (path:/tmp/pip-wheel-m1x1gq3d/yaff_cbc3f1e47da64ad5b8ffa0915c55ebe3/setup.py) egg_info for package yaff 2025-09-08T09:06:28,757 Created temporary directory: /tmp/pip-pip-egg-info-_xerj5oj 2025-09-08T09:06:28,758 Preparing metadata (setup.py): started 2025-09-08T09:06:28,758 Running command python setup.py egg_info 2025-09-08T09:06:29,735 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T09:06:29,735 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T09:06:29,936 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T09:06:29,937 !! 2025-09-08T09:06:29,937 ******************************************************************************** 2025-09-08T09:06:29,937 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T09:06:29,937 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T09:06:29,937 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T09:06:29,937 or your builds will no longer be supported. 2025-09-08T09:06:29,937 ******************************************************************************** 2025-09-08T09:06:29,938 !! 2025-09-08T09:06:29,938 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T09:06:30,350 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:06:30,350 !! 2025-09-08T09:06:30,350 ******************************************************************************** 2025-09-08T09:06:30,350 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:06:30,350 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-09-08T09:06:30,351 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:06:30,351 ******************************************************************************** 2025-09-08T09:06:30,351 !! 2025-09-08T09:06:30,351 self._finalize_license_expression() 2025-09-08T09:06:30,427 running egg_info 2025-09-08T09:06:30,507 creating /tmp/pip-pip-egg-info-_xerj5oj/yaff.egg-info 2025-09-08T09:06:30,507 writing /tmp/pip-pip-egg-info-_xerj5oj/yaff.egg-info/PKG-INFO 2025-09-08T09:06:30,508 writing dependency_links to /tmp/pip-pip-egg-info-_xerj5oj/yaff.egg-info/dependency_links.txt 2025-09-08T09:06:30,509 writing requirements to /tmp/pip-pip-egg-info-_xerj5oj/yaff.egg-info/requires.txt 2025-09-08T09:06:30,509 writing top-level names to /tmp/pip-pip-egg-info-_xerj5oj/yaff.egg-info/top_level.txt 2025-09-08T09:06:30,510 writing manifest file '/tmp/pip-pip-egg-info-_xerj5oj/yaff.egg-info/SOURCES.txt' 2025-09-08T09:06:30,822 reading manifest file '/tmp/pip-pip-egg-info-_xerj5oj/yaff.egg-info/SOURCES.txt' 2025-09-08T09:06:30,823 reading manifest template 'MANIFEST.in' 2025-09-08T09:06:30,823 warning: no files found matching 'README' 2025-09-08T09:06:30,869 warning: no previously-included files matching 'ext.c' found under directory 'yaff' 2025-09-08T09:06:30,876 adding license file 'LICENSE.txt' 2025-09-08T09:06:30,884 writing manifest file '/tmp/pip-pip-egg-info-_xerj5oj/yaff.egg-info/SOURCES.txt' 2025-09-08T09:06:31,026 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T09:06:31,030 Source in /tmp/pip-wheel-m1x1gq3d/yaff_cbc3f1e47da64ad5b8ffa0915c55ebe3 has version 1.3.0, which satisfies requirement yaff==1.3.0 from https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz 2025-09-08T09:06:31,031 Removed yaff==1.3.0 from https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-u6faidfc' 2025-09-08T09:06:31,036 Created temporary directory: /tmp/pip-unpack-1qm0phx0 2025-09-08T09:06:31,036 Created temporary directory: /tmp/pip-unpack-3u7xe37c 2025-09-08T09:06:31,036 Building wheels for collected packages: yaff 2025-09-08T09:06:31,037 Created temporary directory: /tmp/pip-wheel-6lfa2ggf 2025-09-08T09:06:31,038 DEPRECATION: Building 'yaff' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'yaff'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T09:06:31,039 Building wheel for yaff (setup.py): started 2025-09-08T09:06:31,039 Destination directory: /tmp/pip-wheel-6lfa2ggf 2025-09-08T09:06:31,040 Running command python setup.py bdist_wheel 2025-09-08T09:06:31,980 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T09:06:31,980 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T09:06:32,101 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T09:06:32,101 !! 2025-09-08T09:06:32,102 ******************************************************************************** 2025-09-08T09:06:32,102 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T09:06:32,102 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T09:06:32,102 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T09:06:32,102 or your builds will no longer be supported. 2025-09-08T09:06:32,102 ******************************************************************************** 2025-09-08T09:06:32,102 !! 2025-09-08T09:06:32,103 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T09:06:32,473 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:06:32,473 !! 2025-09-08T09:06:32,473 ******************************************************************************** 2025-09-08T09:06:32,473 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:06:32,473 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-09-08T09:06:32,474 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:06:32,474 ******************************************************************************** 2025-09-08T09:06:32,474 !! 2025-09-08T09:06:32,474 self._finalize_license_expression() 2025-09-08T09:06:32,474 running bdist_wheel 2025-09-08T09:06:32,772 running build 2025-09-08T09:06:32,773 running build_py 2025-09-08T09:06:32,852 creating build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:06:32,852 copying yaff/version.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:06:32,853 copying yaff/system.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:06:32,854 copying yaff/log.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:06:32,854 copying yaff/atselect.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:06:32,855 copying yaff/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:06:32,856 creating build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:06:32,856 copying yaff/test/test_system.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:06:32,857 copying yaff/test/test_examples.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:06:32,857 copying yaff/test/test_atselect.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:06:32,858 copying yaff/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:06:32,858 copying yaff/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:06:32,859 creating build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:32,859 copying yaff/pes/vlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:32,860 copying yaff/pes/scaling.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:32,861 copying yaff/pes/parameters.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:32,861 copying yaff/pes/nlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:32,862 copying yaff/pes/iclist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:32,862 copying yaff/pes/generator.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:32,863 copying yaff/pes/ff.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:32,864 copying yaff/pes/dlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:32,864 copying yaff/pes/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:32,865 creating build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,865 copying yaff/pes/test/test_vlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,866 copying yaff/pes/test/test_truncation.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,867 copying yaff/pes/test/test_topology.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,867 copying yaff/pes/test/test_scaling.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,868 copying yaff/pes/test/test_pext.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,868 copying yaff/pes/test/test_parameters.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,869 copying yaff/pes/test/test_pair_pot.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,869 copying yaff/pes/test/test_nlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,870 copying yaff/pes/test/test_md.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,871 copying yaff/pes/test/test_iclist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,871 copying yaff/pes/test/test_grid.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,872 copying yaff/pes/test/test_generator.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,872 copying yaff/pes/test/test_ewald.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,873 copying yaff/pes/test/test_dlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,873 copying yaff/pes/test/test_cell.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,874 copying yaff/pes/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,874 copying yaff/pes/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:06:32,875 creating build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,876 copying yaff/sampling/verlet.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,876 copying yaff/sampling/utils.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,877 copying yaff/sampling/trajectory.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,877 copying yaff/sampling/opt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,878 copying yaff/sampling/nvt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,879 copying yaff/sampling/npt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,879 copying yaff/sampling/iterative.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,880 copying yaff/sampling/io.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,880 copying yaff/sampling/harmonic.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,881 copying yaff/sampling/dof.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,882 copying yaff/sampling/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:06:32,883 creating build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:06:32,883 copying yaff/sampling/test/test_verlet.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:06:32,883 copying yaff/sampling/test/test_utils.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:06:32,884 copying yaff/sampling/test/test_opt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:06:32,884 copying yaff/sampling/test/test_nvt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:06:32,885 copying yaff/sampling/test/test_npt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:06:32,885 copying yaff/sampling/test/test_harmonic.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:06:32,886 copying yaff/sampling/test/test_dof.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:06:32,886 copying yaff/sampling/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:06:32,887 copying yaff/sampling/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:06:32,888 creating build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:06:32,888 copying yaff/analysis/utils.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:06:32,889 copying yaff/analysis/spectrum.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:06:32,889 copying yaff/analysis/rdf.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:06:32,890 copying yaff/analysis/pca.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:06:32,890 copying yaff/analysis/hook.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:06:32,891 copying yaff/analysis/diffusion.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:06:32,891 copying yaff/analysis/blav.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:06:32,892 copying yaff/analysis/basic.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:06:32,892 copying yaff/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:06:32,893 creating build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:06:32,894 copying yaff/analysis/test/test_spectrum.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:06:32,894 copying yaff/analysis/test/test_rdf.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:06:32,895 copying yaff/analysis/test/test_diffusion.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:06:32,895 copying yaff/analysis/test/test_blav.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:06:32,896 copying yaff/analysis/test/test_basic.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:06:32,896 copying yaff/analysis/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:06:32,897 copying yaff/analysis/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:06:32,897 creating build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:06:32,898 copying yaff/tune/transform.py -> build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:06:32,898 copying yaff/tune/cost.py -> build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:06:32,899 copying yaff/tune/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:06:32,899 creating build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:06:32,900 copying yaff/tune/test/test_transform.py -> build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:06:32,900 copying yaff/tune/test/test_cost.py -> build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:06:32,901 copying yaff/tune/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:06:32,901 creating build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:06:32,902 copying yaff/conversion/xyz.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:06:32,902 copying yaff/conversion/gaussian.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:06:32,903 copying yaff/conversion/dlpoly.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:06:32,903 copying yaff/conversion/cp2k.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:06:32,904 copying yaff/conversion/common.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:06:32,904 copying yaff/conversion/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:06:32,905 creating build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:06:32,905 copying yaff/conversion/test/test_xyz.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:06:32,906 copying yaff/conversion/test/test_gaussian.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:06:32,906 copying yaff/conversion/test/test_dlpoly.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:06:32,907 copying yaff/conversion/test/test_cp2k.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:06:32,907 copying yaff/conversion/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:06:32,908 running egg_info 2025-09-08T09:06:32,985 writing yaff.egg-info/PKG-INFO 2025-09-08T09:06:32,986 writing dependency_links to yaff.egg-info/dependency_links.txt 2025-09-08T09:06:32,987 writing requirements to yaff.egg-info/requires.txt 2025-09-08T09:06:32,987 writing top-level names to yaff.egg-info/top_level.txt 2025-09-08T09:06:33,088 reading manifest file 'yaff.egg-info/SOURCES.txt' 2025-09-08T09:06:33,101 reading manifest template 'MANIFEST.in' 2025-09-08T09:06:33,102 warning: no files found matching 'README' 2025-09-08T09:06:33,147 warning: no previously-included files matching 'ext.c' found under directory 'yaff' 2025-09-08T09:06:33,154 adding license file 'LICENSE.txt' 2025-09-08T09:06:33,165 writing manifest file 'yaff.egg-info/SOURCES.txt' 2025-09-08T09:06:33,167 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'yaff.data.opttest' is absent from the `packages` configuration. 2025-09-08T09:06:33,167 !! 2025-09-08T09:06:33,168 ******************************************************************************** 2025-09-08T09:06:33,168 ############################ 2025-09-08T09:06:33,168 # Package would be ignored # 2025-09-08T09:06:33,168 ############################ 2025-09-08T09:06:33,168 Python recognizes 'yaff.data.opttest' as an importable package[^1], 2025-09-08T09:06:33,168 but it is absent from setuptools' `packages` configuration. 2025-09-08T09:06:33,168 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T09:06:33,168 package, please make sure that 'yaff.data.opttest' is explicitly added 2025-09-08T09:06:33,168 to the `packages` configuration field. 2025-09-08T09:06:33,168 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T09:06:33,169 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T09:06:33,169 instead of `find_packages(...)`/`find:`). 2025-09-08T09:06:33,169 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T09:06:33,169 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T09:06:33,169 If you don't want 'yaff.data.opttest' to be distributed and are 2025-09-08T09:06:33,169 already explicitly excluding 'yaff.data.opttest' via 2025-09-08T09:06:33,169 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T09:06:33,169 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T09:06:33,170 combination with a more fine grained `package-data` configuration. 2025-09-08T09:06:33,170 You can read more about "package data files" on setuptools documentation page: 2025-09-08T09:06:33,170 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T09:06:33,170 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T09:06:33,170 even if it does not contain any `.py` files. 2025-09-08T09:06:33,170 On the other hand, currently there is no concept of package data 2025-09-08T09:06:33,170 directory, all directories are treated like packages. 2025-09-08T09:06:33,170 ******************************************************************************** 2025-09-08T09:06:33,171 !! 2025-09-08T09:06:33,171 check.warn(importable) 2025-09-08T09:06:33,171 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'yaff.data.test' is absent from the `packages` configuration. 2025-09-08T09:06:33,171 !! 2025-09-08T09:06:33,171 ******************************************************************************** 2025-09-08T09:06:33,171 ############################ 2025-09-08T09:06:33,171 # Package would be ignored # 2025-09-08T09:06:33,171 ############################ 2025-09-08T09:06:33,171 Python recognizes 'yaff.data.test' as an importable package[^1], 2025-09-08T09:06:33,172 but it is absent from setuptools' `packages` configuration. 2025-09-08T09:06:33,172 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T09:06:33,172 package, please make sure that 'yaff.data.test' is explicitly added 2025-09-08T09:06:33,172 to the `packages` configuration field. 2025-09-08T09:06:33,172 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T09:06:33,172 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T09:06:33,172 instead of `find_packages(...)`/`find:`). 2025-09-08T09:06:33,172 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T09:06:33,173 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T09:06:33,173 If you don't want 'yaff.data.test' to be distributed and are 2025-09-08T09:06:33,173 already explicitly excluding 'yaff.data.test' via 2025-09-08T09:06:33,173 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T09:06:33,173 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T09:06:33,173 combination with a more fine grained `package-data` configuration. 2025-09-08T09:06:33,173 You can read more about "package data files" on setuptools documentation page: 2025-09-08T09:06:33,173 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T09:06:33,174 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T09:06:33,174 even if it does not contain any `.py` files. 2025-09-08T09:06:33,174 On the other hand, currently there is no concept of package data 2025-09-08T09:06:33,174 directory, all directories are treated like packages. 2025-09-08T09:06:33,174 ******************************************************************************** 2025-09-08T09:06:33,174 !! 2025-09-08T09:06:33,174 check.warn(importable) 2025-09-08T09:06:33,174 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'yaff.examples' is absent from the `packages` configuration. 2025-09-08T09:06:33,175 !! 2025-09-08T09:06:33,175 ******************************************************************************** 2025-09-08T09:06:33,175 ############################ 2025-09-08T09:06:33,175 # Package would be ignored # 2025-09-08T09:06:33,175 ############################ 2025-09-08T09:06:33,175 Python recognizes 'yaff.examples' as an importable package[^1], 2025-09-08T09:06:33,175 but it is absent from setuptools' `packages` configuration. 2025-09-08T09:06:33,175 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T09:06:33,175 package, please make sure that 'yaff.examples' is explicitly added 2025-09-08T09:06:33,175 to the `packages` configuration field. 2025-09-08T09:06:33,176 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T09:06:33,176 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T09:06:33,176 instead of `find_packages(...)`/`find:`). 2025-09-08T09:06:33,176 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T09:06:33,176 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T09:06:33,176 If you don't want 'yaff.examples' to be distributed and are 2025-09-08T09:06:33,176 already explicitly excluding 'yaff.examples' via 2025-09-08T09:06:33,176 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T09:06:33,177 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T09:06:33,177 combination with a more fine grained `package-data` configuration. 2025-09-08T09:06:33,177 You can read more about "package data files" on setuptools documentation page: 2025-09-08T09:06:33,177 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T09:06:33,177 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T09:06:33,177 even if it does not contain any `.py` files. 2025-09-08T09:06:33,177 On the other hand, currently there is no concept of package data 2025-09-08T09:06:33,177 directory, all directories are treated like packages. 2025-09-08T09:06:33,178 ******************************************************************************** 2025-09-08T09:06:33,178 !! 2025-09-08T09:06:33,178 check.warn(importable) 2025-09-08T09:06:33,183 creating build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,183 copying yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,184 copying yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,185 copying yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,185 copying yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,186 copying yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,186 copying yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,187 copying yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,188 copying yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,188 copying yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,189 copying yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,189 copying yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,190 copying yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,191 copying yaff/data/opttest/alpha_quartz.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,191 copying yaff/data/opttest/alpha_quartz_distorted.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,192 copying yaff/data/opttest/cases.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,192 copying yaff/data/opttest/merlonite_debug.pot -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,193 copying yaff/data/opttest/merlonite_fragment.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,193 copying yaff/data/opttest/merlonite_fragment_overbonded.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,194 copying yaff/data/opttest/water_dimer.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:06:33,194 creating build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,195 copying yaff/data/test/chloro_pos.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,196 copying yaff/data/test/chloro_vol.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,197 copying yaff/data/test/cp2k-1.ener -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,197 copying yaff/data/test/dlpoly_HISTORY_an1 -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,198 copying yaff/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,198 copying yaff/data/test/dlpoly_HISTORY_sam -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,199 copying yaff/data/test/dlpoly_HISTORY_uo -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,199 copying yaff/data/test/gaussian_sioh4_md.log -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,200 copying yaff/data/test/gaussian_sioh4_md.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,201 copying yaff/data/test/guaianolide.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,201 copying yaff/data/test/guaianolide_framework_ordered.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,202 copying yaff/data/test/nobornane.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,203 copying yaff/data/test/parameters_alkane.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,203 copying yaff/data/test/parameters_bks.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,204 copying yaff/data/test/parameters_fake_d3bj.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,204 copying yaff/data/test/parameters_fake_dampdisp1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,205 copying yaff/data/test/parameters_fake_exprep1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,205 copying yaff/data/test/parameters_fake_lj.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,206 copying yaff/data/test/parameters_fake_mm3.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,206 copying yaff/data/test/parameters_fake_qmdffrep.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,207 copying yaff/data/test/parameters_fake_torsion1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,207 copying yaff/data/test/parameters_fake_torsion2.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,208 copying yaff/data/test/parameters_formaldehyde_inversion.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,208 copying yaff/data/test/parameters_glycine_fixq.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,209 copying yaff/data/test/parameters_glycine_torsion.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,209 copying yaff/data/test/parameters_nacl.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,210 copying yaff/data/test/parameters_polyene.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,210 copying yaff/data/test/parameters_water.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,211 copying yaff/data/test/parameters_water_bendaharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,211 copying yaff/data/test/parameters_water_bendcharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,212 copying yaff/data/test/parameters_water_bondcross.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,212 copying yaff/data/test/parameters_water_bondfues.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,213 copying yaff/data/test/parameters_water_bondharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,213 copying yaff/data/test/parameters_water_cross.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,214 copying yaff/data/test/parameters_water_dampdisp1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,214 copying yaff/data/test/parameters_water_dampdisp2.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,215 copying yaff/data/test/parameters_water_exprep1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,215 copying yaff/data/test/parameters_water_exprep2.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,216 copying yaff/data/test/parameters_water_exprep3.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,216 copying yaff/data/test/parameters_water_fixq.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,217 copying yaff/data/test/parameters_water_fixq_dielectric.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,217 copying yaff/data/test/parameters_water_lj.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,218 copying yaff/data/test/parameters_water_mm3.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,218 copying yaff/data/test/parameters_water_ubharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,219 copying yaff/data/test/rhodium_complex_nobornane.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,219 copying yaff/data/test/water_hessian.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,220 copying yaff/data/test/water_trajectory.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:06:33,220 creating build/lib.linux-armv7l-cpython-313/yaff/examples 2025-09-08T09:06:33,220 copying yaff/examples/.gitignore -> build/lib.linux-armv7l-cpython-313/yaff/examples 2025-09-08T09:06:33,221 creating build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:06:33,221 copying yaff/examples/000_overview/parameters.txt -> build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:06:33,222 copying yaff/examples/000_overview/simulation.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:06:33,222 copying yaff/examples/000_overview/system.chk -> build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:06:33,223 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks 2025-09-08T09:06:33,223 copying yaff/examples/001_tutorial_bks/all.sh -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks 2025-09-08T09:06:33,224 copying yaff/examples/001_tutorial_bks/bks.pot -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks 2025-09-08T09:06:33,224 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:06:33,224 copying yaff/examples/001_tutorial_bks/init/mksystem.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:06:33,225 copying yaff/examples/001_tutorial_bks/init/rvecs.txt -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:06:33,225 copying yaff/examples/001_tutorial_bks/init/struct.xyz -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:06:33,226 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/nvt 2025-09-08T09:06:33,226 copying yaff/examples/001_tutorial_bks/nvt/analysis.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/nvt 2025-09-08T09:06:33,227 copying yaff/examples/001_tutorial_bks/nvt/simulation.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/nvt 2025-09-08T09:06:33,227 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/opt 2025-09-08T09:06:33,227 copying yaff/examples/001_tutorial_bks/opt/analysis.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/opt 2025-09-08T09:06:33,228 copying yaff/examples/001_tutorial_bks/opt/simulation.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/opt 2025-09-08T09:06:33,229 creating build/lib.linux-armv7l-cpython-313/yaff/examples/002_external_trajectory 2025-09-08T09:06:33,229 copying yaff/examples/002_external_trajectory/rdf.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/002_external_trajectory 2025-09-08T09:06:33,229 copying yaff/examples/002_external_trajectory/trajectory.xyz -> build/lib.linux-armv7l-cpython-313/yaff/examples/002_external_trajectory 2025-09-08T09:06:33,230 creating build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:06:33,230 copying yaff/examples/003_water_thermostat/md.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:06:33,231 copying yaff/examples/003_water_thermostat/parameters.txt -> build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:06:33,231 copying yaff/examples/003_water_thermostat/system.chk -> build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:06:33,232 creating build/lib.linux-armv7l-cpython-313/yaff/examples/999_back_propagation 2025-09-08T09:06:33,232 copying yaff/examples/999_back_propagation/bp.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/999_back_propagation 2025-09-08T09:06:33,232 copying yaff/pes/cell.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,233 copying yaff/pes/cell.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,234 copying yaff/pes/cell.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,234 copying yaff/pes/constants.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,235 copying yaff/pes/dlist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,235 copying yaff/pes/dlist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,236 copying yaff/pes/dlist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,236 copying yaff/pes/ewald.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,237 copying yaff/pes/ewald.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,237 copying yaff/pes/ewald.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,238 copying yaff/pes/ext.pyx -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,238 copying yaff/pes/grid.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,239 copying yaff/pes/grid.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,240 copying yaff/pes/grid.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,240 copying yaff/pes/iclist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,241 copying yaff/pes/iclist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,241 copying yaff/pes/iclist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,242 copying yaff/pes/nlist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,242 copying yaff/pes/nlist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,243 copying yaff/pes/nlist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,243 copying yaff/pes/pair_pot.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,244 copying yaff/pes/pair_pot.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,245 copying yaff/pes/pair_pot.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,245 copying yaff/pes/slater.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,246 copying yaff/pes/slater.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,246 copying yaff/pes/slater.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,247 copying yaff/pes/truncation.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,247 copying yaff/pes/truncation.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,248 copying yaff/pes/truncation.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,248 copying yaff/pes/vlist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,249 copying yaff/pes/vlist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,249 copying yaff/pes/vlist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:06:33,253 running build_ext 2025-09-08T09:06:33,768 Compiling yaff/pes/ext.pyx because it changed. 2025-09-08T09:06:33,768 [1/1] Cythonizing yaff/pes/ext.pyx 2025-09-08T09:06:35,614 Error compiling Cython file: 2025-09-08T09:06:35,614 ------------------------------------------------------------ 2025-09-08T09:06:35,614 ... 2025-09-08T09:06:35,614 from __future__ import division 2025-09-08T09:06:35,615 import numpy as np 2025-09-08T09:06:35,615 cimport numpy as np 2025-09-08T09:06:35,615 cimport cell 2025-09-08T09:06:35,615 ^ 2025-09-08T09:06:35,615 ------------------------------------------------------------ 2025-09-08T09:06:35,615 yaff/pes/ext.pyx:37:8: 'cell.pxd' not found 2025-09-08T09:06:35,654 Error compiling Cython file: 2025-09-08T09:06:35,654 ------------------------------------------------------------ 2025-09-08T09:06:35,654 ... 2025-09-08T09:06:35,655 import numpy as np 2025-09-08T09:06:35,655 cimport numpy as np 2025-09-08T09:06:35,655 cimport cell 2025-09-08T09:06:35,655 cimport nlist 2025-09-08T09:06:35,656 ^ 2025-09-08T09:06:35,656 ------------------------------------------------------------ 2025-09-08T09:06:35,656 yaff/pes/ext.pyx:38:8: 'nlist.pxd' not found 2025-09-08T09:06:35,687 Error compiling Cython file: 2025-09-08T09:06:35,687 ------------------------------------------------------------ 2025-09-08T09:06:35,687 ... 2025-09-08T09:06:35,687 import numpy as np 2025-09-08T09:06:35,687 cimport numpy as np 2025-09-08T09:06:35,688 cimport cell 2025-09-08T09:06:35,688 cimport nlist 2025-09-08T09:06:35,688 cimport pair_pot 2025-09-08T09:06:35,688 ^ 2025-09-08T09:06:35,688 ------------------------------------------------------------ 2025-09-08T09:06:35,688 yaff/pes/ext.pyx:39:8: 'pair_pot.pxd' not found 2025-09-08T09:06:35,721 Error compiling Cython file: 2025-09-08T09:06:35,721 ------------------------------------------------------------ 2025-09-08T09:06:35,721 ... 2025-09-08T09:06:35,721 import numpy as np 2025-09-08T09:06:35,721 cimport numpy as np 2025-09-08T09:06:35,721 cimport cell 2025-09-08T09:06:35,722 cimport nlist 2025-09-08T09:06:35,722 cimport pair_pot 2025-09-08T09:06:35,722 cimport ewald 2025-09-08T09:06:35,722 ^ 2025-09-08T09:06:35,722 ------------------------------------------------------------ 2025-09-08T09:06:35,723 yaff/pes/ext.pyx:40:8: 'ewald.pxd' not found 2025-09-08T09:06:35,754 Error compiling Cython file: 2025-09-08T09:06:35,754 ------------------------------------------------------------ 2025-09-08T09:06:35,754 ... 2025-09-08T09:06:35,754 cimport numpy as np 2025-09-08T09:06:35,754 cimport cell 2025-09-08T09:06:35,754 cimport nlist 2025-09-08T09:06:35,754 cimport pair_pot 2025-09-08T09:06:35,754 cimport ewald 2025-09-08T09:06:35,755 cimport dlist 2025-09-08T09:06:35,755 ^ 2025-09-08T09:06:35,755 ------------------------------------------------------------ 2025-09-08T09:06:35,755 yaff/pes/ext.pyx:41:8: 'dlist.pxd' not found 2025-09-08T09:06:35,786 Error compiling Cython file: 2025-09-08T09:06:35,787 ------------------------------------------------------------ 2025-09-08T09:06:35,787 ... 2025-09-08T09:06:35,787 cimport cell 2025-09-08T09:06:35,787 cimport nlist 2025-09-08T09:06:35,787 cimport pair_pot 2025-09-08T09:06:35,787 cimport ewald 2025-09-08T09:06:35,787 cimport dlist 2025-09-08T09:06:35,787 cimport iclist 2025-09-08T09:06:35,788 ^ 2025-09-08T09:06:35,788 ------------------------------------------------------------ 2025-09-08T09:06:35,788 yaff/pes/ext.pyx:42:8: 'iclist.pxd' not found 2025-09-08T09:06:35,819 Error compiling Cython file: 2025-09-08T09:06:35,819 ------------------------------------------------------------ 2025-09-08T09:06:35,819 ... 2025-09-08T09:06:35,819 cimport nlist 2025-09-08T09:06:35,819 cimport pair_pot 2025-09-08T09:06:35,819 cimport ewald 2025-09-08T09:06:35,820 cimport dlist 2025-09-08T09:06:35,820 cimport iclist 2025-09-08T09:06:35,820 cimport vlist 2025-09-08T09:06:35,820 ^ 2025-09-08T09:06:35,820 ------------------------------------------------------------ 2025-09-08T09:06:35,820 yaff/pes/ext.pyx:43:8: 'vlist.pxd' not found 2025-09-08T09:06:35,850 Error compiling Cython file: 2025-09-08T09:06:35,851 ------------------------------------------------------------ 2025-09-08T09:06:35,851 ... 2025-09-08T09:06:35,851 cimport pair_pot 2025-09-08T09:06:35,851 cimport ewald 2025-09-08T09:06:35,851 cimport dlist 2025-09-08T09:06:35,851 cimport iclist 2025-09-08T09:06:35,851 cimport vlist 2025-09-08T09:06:35,851 cimport truncation 2025-09-08T09:06:35,852 ^ 2025-09-08T09:06:35,852 ------------------------------------------------------------ 2025-09-08T09:06:35,852 yaff/pes/ext.pyx:44:8: 'truncation.pxd' not found 2025-09-08T09:06:35,883 Error compiling Cython file: 2025-09-08T09:06:35,883 ------------------------------------------------------------ 2025-09-08T09:06:35,883 ... 2025-09-08T09:06:35,883 cimport ewald 2025-09-08T09:06:35,883 cimport dlist 2025-09-08T09:06:35,883 cimport iclist 2025-09-08T09:06:35,883 cimport vlist 2025-09-08T09:06:35,883 cimport truncation 2025-09-08T09:06:35,884 cimport grid 2025-09-08T09:06:35,884 ^ 2025-09-08T09:06:35,884 ------------------------------------------------------------ 2025-09-08T09:06:35,884 yaff/pes/ext.pyx:45:8: 'grid.pxd' not found 2025-09-08T09:06:35,884 Error compiling Cython file: 2025-09-08T09:06:35,884 ------------------------------------------------------------ 2025-09-08T09:06:35,884 ... 2025-09-08T09:06:35,885 '''Representation of periodic boundary conditions. 2025-09-08T09:06:35,885 0, 1, 2 and 3 dimensional systems are supported. The cell vectors need 2025-09-08T09:06:35,885 not to be orthogonal. 2025-09-08T09:06:35,885 ''' 2025-09-08T09:06:35,885 cdef cell.cell_type* _c_cell 2025-09-08T09:06:35,885 ^ 2025-09-08T09:06:35,885 ------------------------------------------------------------ 2025-09-08T09:06:35,886 yaff/pes/ext.pyx:74:9: 'cell_type' is not a type identifier 2025-09-08T09:06:35,889 Error compiling Cython file: 2025-09-08T09:06:35,890 ------------------------------------------------------------ 2025-09-08T09:06:35,890 ... 2025-09-08T09:06:35,890 def nlist_build(np.ndarray[double, ndim=2] pos, double rcut, 2025-09-08T09:06:35,890 np.ndarray[long, ndim=1] rmax, 2025-09-08T09:06:35,890 Cell unitcell, np.ndarray[long, ndim=1] status, 2025-09-08T09:06:35,890 np.ndarray[nlist.neigh_row_type, ndim=1] neighs): 2025-09-08T09:06:35,890 ^ 2025-09-08T09:06:35,890 ------------------------------------------------------------ 2025-09-08T09:06:35,891 yaff/pes/ext.pyx:370:33: Invalid type. 2025-09-08T09:06:35,910 Traceback (most recent call last): 2025-09-08T09:06:35,918 File "", line 2, in 2025-09-08T09:06:35,918 exec(compile(''' 2025-09-08T09:06:35,918 ~~~~^^^^^^^^^^^^ 2025-09-08T09:06:35,918 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:06:35,919 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:06:35,919 ...<32 lines>... 2025-09-08T09:06:35,919 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:06:35,919 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:06:35,919 ''' % ('/tmp/pip-wheel-m1x1gq3d/yaff_cbc3f1e47da64ad5b8ffa0915c55ebe3/setup.py',), "", "exec")) 2025-09-08T09:06:35,919 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:06:35,919 File "", line 35, in 2025-09-08T09:06:35,919 File "/tmp/pip-wheel-m1x1gq3d/yaff_cbc3f1e47da64ad5b8ffa0915c55ebe3/setup.py", line 71, in 2025-09-08T09:06:35,920 setup( 2025-09-08T09:06:35,920 ~~~~~^ 2025-09-08T09:06:35,920 name='yaff', 2025-09-08T09:06:35,920 ^^^^^^^^^^^^ 2025-09-08T09:06:35,920 ...<46 lines>... 2025-09-08T09:06:35,920 ], 2025-09-08T09:06:35,920 ^^ 2025-09-08T09:06:35,920 ) 2025-09-08T09:06:35,920 ^ 2025-09-08T09:06:35,920 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T09:06:35,921 return distutils.core.setup(**attrs) 2025-09-08T09:06:35,921 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:06:35,921 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T09:06:35,921 return run_commands(dist) 2025-09-08T09:06:35,921 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T09:06:35,921 dist.run_commands() 2025-09-08T09:06:35,921 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:06:35,921 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T09:06:35,921 self.run_command(cmd) 2025-09-08T09:06:35,922 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T09:06:35,922 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:06:35,922 super().run_command(command) 2025-09-08T09:06:35,922 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:06:35,922 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:06:35,922 cmd_obj.run() 2025-09-08T09:06:35,922 ~~~~~~~~~~~^^ 2025-09-08T09:06:35,922 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T09:06:35,923 self.run_command("build") 2025-09-08T09:06:35,923 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:06:35,923 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T09:06:35,923 self.distribution.run_command(command) 2025-09-08T09:06:35,923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:06:35,923 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:06:35,923 super().run_command(command) 2025-09-08T09:06:35,923 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:06:35,924 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:06:35,924 cmd_obj.run() 2025-09-08T09:06:35,924 ~~~~~~~~~~~^^ 2025-09-08T09:06:35,924 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T09:06:35,924 self.run_command(cmd_name) 2025-09-08T09:06:35,924 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T09:06:35,924 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T09:06:35,924 self.distribution.run_command(command) 2025-09-08T09:06:35,924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:06:35,925 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:06:35,925 super().run_command(command) 2025-09-08T09:06:35,925 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:06:35,925 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:06:35,925 cmd_obj.run() 2025-09-08T09:06:35,925 ~~~~~~~~~~~^^ 2025-09-08T09:06:35,925 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-08T09:06:35,925 self.build_extensions() 2025-09-08T09:06:35,926 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:06:35,926 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-08T09:06:35,926 self._build_extensions_serial() 2025-09-08T09:06:35,926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:06:35,926 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-08T09:06:35,926 self.build_extension(ext) 2025-09-08T09:06:35,926 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T09:06:35,926 File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension 2025-09-08T09:06:35,927 new_ext = cythonize( 2025-09-08T09:06:35,927 ~~~~~~~~~^ 2025-09-08T09:06:35,927 ext,force=self.force, quiet=self.verbose == 0, **options 2025-09-08T09:06:35,927 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:06:35,927 )[0] 2025-09-08T09:06:35,927 ^ 2025-09-08T09:06:35,927 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T09:06:35,927 cythonize_one(*args) 2025-09-08T09:06:35,928 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T09:06:35,928 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T09:06:35,928 raise CompileError(None, pyx_file) 2025-09-08T09:06:35,928 Cython.Compiler.Errors.CompileError: yaff/pes/ext.pyx 2025-09-08T09:06:36,296 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T09:06:36,307 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T09:06:36,307 exec(compile('"'"''"'"''"'"' 2025-09-08T09:06:36,307 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:06:36,307 # 2025-09-08T09:06:36,307 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T09:06:36,307 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T09:06:36,307 # - It provides a clear error message when setuptools is not installed. 2025-09-08T09:06:36,307 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T09:06:36,307 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T09:06:36,307 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T09:06:36,307 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T09:06:36,307 import os, sys, tokenize, traceback 2025-09-08T09:06:36,307 2025-09-08T09:06:36,307 try: 2025-09-08T09:06:36,307 import setuptools 2025-09-08T09:06:36,307 except ImportError: 2025-09-08T09:06:36,307 print( 2025-09-08T09:06:36,307 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T09:06:36,307 "the build environment with exception:", 2025-09-08T09:06:36,307 file=sys.stderr, 2025-09-08T09:06:36,307 ) 2025-09-08T09:06:36,307 traceback.print_exc() 2025-09-08T09:06:36,307 sys.exit(1) 2025-09-08T09:06:36,307 2025-09-08T09:06:36,307 __file__ = %r 2025-09-08T09:06:36,307 sys.argv[0] = __file__ 2025-09-08T09:06:36,307 2025-09-08T09:06:36,307 if os.path.exists(__file__): 2025-09-08T09:06:36,307 filename = __file__ 2025-09-08T09:06:36,307 with tokenize.open(__file__) as f: 2025-09-08T09:06:36,307 setup_py_code = f.read() 2025-09-08T09:06:36,307 else: 2025-09-08T09:06:36,307 filename = "" 2025-09-08T09:06:36,307 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T09:06:36,307 2025-09-08T09:06:36,307 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:06:36,307 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-m1x1gq3d/yaff_cbc3f1e47da64ad5b8ffa0915c55ebe3/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-6lfa2ggf[/] 2025-09-08T09:06:36,308 [bold magenta]cwd[/]: /tmp/pip-wheel-m1x1gq3d/yaff_cbc3f1e47da64ad5b8ffa0915c55ebe3/ 2025-09-08T09:06:36,308 Building wheel for yaff (setup.py): finished with status 'error' 2025-09-08T09:06:36,309 ERROR: Failed building wheel for yaff 2025-09-08T09:06:36,309 Running setup.py clean for yaff 2025-09-08T09:06:36,310 Running command python setup.py clean 2025-09-08T09:06:37,271 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T09:06:37,271 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T09:06:37,393 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T09:06:37,393 !! 2025-09-08T09:06:37,393 ******************************************************************************** 2025-09-08T09:06:37,394 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T09:06:37,394 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T09:06:37,394 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T09:06:37,394 or your builds will no longer be supported. 2025-09-08T09:06:37,394 ******************************************************************************** 2025-09-08T09:06:37,394 !! 2025-09-08T09:06:37,394 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T09:06:37,772 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:06:37,772 !! 2025-09-08T09:06:37,772 ******************************************************************************** 2025-09-08T09:06:37,772 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:06:37,772 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-09-08T09:06:37,772 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:06:37,773 ******************************************************************************** 2025-09-08T09:06:37,773 !! 2025-09-08T09:06:37,773 self._finalize_license_expression() 2025-09-08T09:06:37,850 running clean 2025-09-08T09:06:38,000 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T09:06:38,008 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T09:06:38,009 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T09:06:38,009 removing 'build' 2025-09-08T09:06:38,148 Failed to build yaff 2025-09-08T09:06:38,149 ERROR: Failed to build one or more wheels 2025-09-08T09:06:38,150 Exception information: 2025-09-08T09:06:38,150 Traceback (most recent call last): 2025-09-08T09:06:38,150 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T09:06:38,150 status = _inner_run() 2025-09-08T09:06:38,150 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T09:06:38,150 return self.run(options, args) 2025-09-08T09:06:38,150 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T09:06:38,150 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T09:06:38,150 return func(self, options, args) 2025-09-08T09:06:38,150 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T09:06:38,150 raise CommandError("Failed to build one or more wheels") 2025-09-08T09:06:38,150 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T09:06:38,154 Removed build tracker: '/tmp/pip-build-tracker-u6faidfc'