2025-09-08T09:13:40,718 Created temporary directory: /tmp/pip-build-tracker-dgyq9d0x 2025-09-08T09:13:40,718 Initialized build tracking at /tmp/pip-build-tracker-dgyq9d0x 2025-09-08T09:13:40,718 Created build tracker: /tmp/pip-build-tracker-dgyq9d0x 2025-09-08T09:13:40,718 Entered build tracker: /tmp/pip-build-tracker-dgyq9d0x 2025-09-08T09:13:40,719 Created temporary directory: /tmp/pip-wheel-2k6oq109 2025-09-08T09:13:40,722 Created temporary directory: /tmp/pip-ephem-wheel-cache-kt9ix5r0 2025-09-08T09:13:40,779 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T09:13:40,781 2 location(s) to search for versions of pydensecrf: 2025-09-08T09:13:40,781 * https://pypi.org/simple/pydensecrf/ 2025-09-08T09:13:40,781 * https://www.piwheels.org/simple/pydensecrf/ 2025-09-08T09:13:40,781 Fetching project page and analyzing links: https://pypi.org/simple/pydensecrf/ 2025-09-08T09:13:40,782 Getting page https://pypi.org/simple/pydensecrf/ 2025-09-08T09:13:40,783 Found index url https://pypi.org/simple/ 2025-09-08T09:13:40,853 Fetched page https://pypi.org/simple/pydensecrf/ as application/vnd.pypi.simple.v1+json 2025-09-08T09:13:40,854 Found link https://files.pythonhosted.org/packages/87/40/8bca500342914f83d35da61fd7be0c47955156bee87683a6aa1d0e8e040a/pydensecrf-1.0rc1.tar.gz (from https://pypi.org/simple/pydensecrf/), version: 1.0rc1 2025-09-08T09:13:40,854 Found link https://files.pythonhosted.org/packages/dd/11/7a79e817078323893f8071bb3fda1f45e34e443ec4a0790f8542158bbced/pydensecrf-1.0rc2.tar.gz (from https://pypi.org/simple/pydensecrf/), version: 1.0rc2 2025-09-08T09:13:40,854 Found link https://files.pythonhosted.org/packages/31/5a/1c2ab48e8019d282c128bc5c621332267bb954d32eecdda3ba57306b1551/pydensecrf-1.0rc3.tar.gz (from https://pypi.org/simple/pydensecrf/), version: 1.0rc3 2025-09-08T09:13:40,855 Fetching project page and analyzing links: https://www.piwheels.org/simple/pydensecrf/ 2025-09-08T09:13:40,855 Getting page https://www.piwheels.org/simple/pydensecrf/ 2025-09-08T09:13:40,856 Found index url https://www.piwheels.org/simple/ 2025-09-08T09:13:40,945 Fetched page https://www.piwheels.org/simple/pydensecrf/ as text/html 2025-09-08T09:13:40,948 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc3-cp34-cp34m-linux_armv6l.whl#sha256=10b3c73f1525f811209ecccc1f6c4c428bf493ddacc88091c8c2f97c5c1a52a4 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,948 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc3-cp34-cp34m-linux_armv7l.whl#sha256=10b3c73f1525f811209ecccc1f6c4c428bf493ddacc88091c8c2f97c5c1a52a4 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,948 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc3-cp35-cp35m-linux_armv7l.whl#sha256=097b990b0058792311dc92c8568d434685054fa51dd6c2b2b20a9f81c29e7b1d (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,948 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc3-cp35-cp35m-linux_armv6l.whl#sha256=097b990b0058792311dc92c8568d434685054fa51dd6c2b2b20a9f81c29e7b1d (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,948 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc2-cp34-cp34m-linux_armv6l.whl#sha256=72376de0d7e5c4f4d20e10701a5c6baff63266ad7b69da29dad270263fe92563 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,949 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc2-cp34-cp34m-linux_armv7l.whl#sha256=72376de0d7e5c4f4d20e10701a5c6baff63266ad7b69da29dad270263fe92563 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,949 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc2-cp35-cp35m-linux_armv7l.whl#sha256=9c5ac6c66ed3d66607fa12832a19ce4366c0826d3030e1cd84825d9eb80bedae (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,949 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc2-cp35-cp35m-linux_armv6l.whl#sha256=9c5ac6c66ed3d66607fa12832a19ce4366c0826d3030e1cd84825d9eb80bedae (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,949 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc1-cp35-cp35m-linux_armv6l.whl#sha256=ed50ded72e9ee0d18aa6c0a8b83d40251834554a543313f84e90041cdc18b9bd (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,949 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc1-cp35-cp35m-linux_armv7l.whl#sha256=ed50ded72e9ee0d18aa6c0a8b83d40251834554a543313f84e90041cdc18b9bd (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,949 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc1-cp34-cp34m-linux_armv7l.whl#sha256=243d9cd5d31c6c6b3f9be94fe3483f569f55cadc574b85a5f3850b0cc720a035 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,949 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc1-cp34-cp34m-linux_armv6l.whl#sha256=243d9cd5d31c6c6b3f9be94fe3483f569f55cadc574b85a5f3850b0cc720a035 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T09:13:40,950 Skipping link: not a file: https://www.piwheels.org/simple/pydensecrf/ 2025-09-08T09:13:40,950 Skipping link: not a file: https://pypi.org/simple/pydensecrf/ 2025-09-08T09:13:40,973 Given no hashes to check 1 links for project 'pydensecrf': discarding no candidates 2025-09-08T09:13:40,974 Collecting pydensecrf==1.0rc2 2025-09-08T09:13:40,976 Created temporary directory: /tmp/pip-unpack-j71z7qqy 2025-09-08T09:13:41,128 Downloading pydensecrf-1.0rc2.tar.gz (1.0 MB) 2025-09-08T09:13:41,560 Added pydensecrf==1.0rc2 from https://files.pythonhosted.org/packages/dd/11/7a79e817078323893f8071bb3fda1f45e34e443ec4a0790f8542158bbced/pydensecrf-1.0rc2.tar.gz to build tracker '/tmp/pip-build-tracker-dgyq9d0x' 2025-09-08T09:13:41,561 Running setup.py (path:/tmp/pip-wheel-2k6oq109/pydensecrf_7bc43695ebed4e7eab6d5106c68033a7/setup.py) egg_info for package pydensecrf 2025-09-08T09:13:41,561 Created temporary directory: /tmp/pip-pip-egg-info-r4lixcp4 2025-09-08T09:13:41,562 Preparing metadata (setup.py): started 2025-09-08T09:13:41,562 Running command python setup.py egg_info 2025-09-08T09:13:43,483 Error compiling Cython file: 2025-09-08T09:13:43,483 ------------------------------------------------------------ 2025-09-08T09:13:43,483 ... 2025-09-08T09:13:43,484 from eigen cimport * 2025-09-08T09:13:43,484 ^ 2025-09-08T09:13:43,484 ------------------------------------------------------------ 2025-09-08T09:13:43,484 pydensecrf/densecrf.pxd:1:0: 'eigen.pxd' not found 2025-09-08T09:13:43,484 Error compiling Cython file: 2025-09-08T09:13:43,485 ------------------------------------------------------------ 2025-09-08T09:13:43,485 ... 2025-09-08T09:13:43,485 cdef cppclass PottsCompatibility(LabelCompatibility): 2025-09-08T09:13:43,485 PottsCompatibility(float) except + 2025-09-08T09:13:43,485 cdef cppclass DiagonalCompatibility(LabelCompatibility): 2025-09-08T09:13:43,485 DiagonalCompatibility(const c_VectorXf&) except + 2025-09-08T09:13:43,485 ^ 2025-09-08T09:13:43,485 ------------------------------------------------------------ 2025-09-08T09:13:43,486 pydensecrf/densecrf.pxd:12:36: 'c_VectorXf' is not a type identifier 2025-09-08T09:13:43,486 Error compiling Cython file: 2025-09-08T09:13:43,486 ------------------------------------------------------------ 2025-09-08T09:13:43,486 ... 2025-09-08T09:13:43,486 cdef cppclass DiagonalCompatibility(LabelCompatibility): 2025-09-08T09:13:43,486 DiagonalCompatibility(const c_VectorXf&) except + 2025-09-08T09:13:43,487 cdef cppclass MatrixCompatibility(LabelCompatibility): 2025-09-08T09:13:43,487 MatrixCompatibility(const c_MatrixXf&) except + 2025-09-08T09:13:43,487 ^ 2025-09-08T09:13:43,487 ------------------------------------------------------------ 2025-09-08T09:13:43,487 pydensecrf/densecrf.pxd:15:34: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,487 Error compiling Cython file: 2025-09-08T09:13:43,487 ------------------------------------------------------------ 2025-09-08T09:13:43,487 ... 2025-09-08T09:13:43,487 cdef extern from "densecrf/include/unary.h": 2025-09-08T09:13:43,488 cdef cppclass UnaryEnergy: 2025-09-08T09:13:43,488 pass 2025-09-08T09:13:43,488 cdef cppclass ConstUnaryEnergy(UnaryEnergy): 2025-09-08T09:13:43,488 ConstUnaryEnergy(const c_MatrixXf& unary) except + 2025-09-08T09:13:43,488 ^ 2025-09-08T09:13:43,488 ------------------------------------------------------------ 2025-09-08T09:13:43,488 pydensecrf/densecrf.pxd:23:31: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,489 Error compiling Cython file: 2025-09-08T09:13:43,489 ------------------------------------------------------------ 2025-09-08T09:13:43,489 ... 2025-09-08T09:13:43,489 cdef cppclass ConstUnaryEnergy(UnaryEnergy): 2025-09-08T09:13:43,489 ConstUnaryEnergy(const c_MatrixXf& unary) except + 2025-09-08T09:13:43,489 cdef cppclass LogisticUnaryEnergy(UnaryEnergy): 2025-09-08T09:13:43,489 LogisticUnaryEnergy(const c_MatrixXf& L, const c_MatrixXf& feature) except + 2025-09-08T09:13:43,489 ^ 2025-09-08T09:13:43,489 ------------------------------------------------------------ 2025-09-08T09:13:43,490 pydensecrf/densecrf.pxd:26:34: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,490 Error compiling Cython file: 2025-09-08T09:13:43,490 ------------------------------------------------------------ 2025-09-08T09:13:43,490 ... 2025-09-08T09:13:43,490 cdef cppclass ConstUnaryEnergy(UnaryEnergy): 2025-09-08T09:13:43,490 ConstUnaryEnergy(const c_MatrixXf& unary) except + 2025-09-08T09:13:43,490 cdef cppclass LogisticUnaryEnergy(UnaryEnergy): 2025-09-08T09:13:43,491 LogisticUnaryEnergy(const c_MatrixXf& L, const c_MatrixXf& feature) except + 2025-09-08T09:13:43,491 ^ 2025-09-08T09:13:43,491 ------------------------------------------------------------ 2025-09-08T09:13:43,491 pydensecrf/densecrf.pxd:26:55: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,491 Error compiling Cython file: 2025-09-08T09:13:43,491 ------------------------------------------------------------ 2025-09-08T09:13:43,491 ... 2025-09-08T09:13:43,491 c_DenseCRF(int N, int M) except + 2025-09-08T09:13:43,492 # Setup methods. 2025-09-08T09:13:43,492 # TODO 2025-09-08T09:13:43,492 #void addPairwiseEnergy(PairwisePotential *potential) 2025-09-08T09:13:43,492 void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType) 2025-09-08T09:13:43,492 ^ 2025-09-08T09:13:43,492 ------------------------------------------------------------ 2025-09-08T09:13:43,492 pydensecrf/densecrf.pxd:54:37: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,492 Error compiling Cython file: 2025-09-08T09:13:43,493 ------------------------------------------------------------ 2025-09-08T09:13:43,493 ... 2025-09-08T09:13:43,493 # Setup methods. 2025-09-08T09:13:43,493 # TODO 2025-09-08T09:13:43,493 #void addPairwiseEnergy(PairwisePotential *potential) 2025-09-08T09:13:43,493 void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType) 2025-09-08T09:13:43,493 void setUnaryEnergy(UnaryEnergy *unary) 2025-09-08T09:13:43,493 void setUnaryEnergy(const c_MatrixXf &unary) 2025-09-08T09:13:43,493 ^ 2025-09-08T09:13:43,493 ------------------------------------------------------------ 2025-09-08T09:13:43,494 pydensecrf/densecrf.pxd:56:34: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,494 Error compiling Cython file: 2025-09-08T09:13:43,494 ------------------------------------------------------------ 2025-09-08T09:13:43,494 ... 2025-09-08T09:13:43,494 # TODO 2025-09-08T09:13:43,494 #void addPairwiseEnergy(PairwisePotential *potential) 2025-09-08T09:13:43,494 void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType) 2025-09-08T09:13:43,494 void setUnaryEnergy(UnaryEnergy *unary) 2025-09-08T09:13:43,495 void setUnaryEnergy(const c_MatrixXf &unary) 2025-09-08T09:13:43,495 void setUnaryEnergy(const c_MatrixXf &L, const c_MatrixXf &feature) 2025-09-08T09:13:43,495 ^ 2025-09-08T09:13:43,495 ------------------------------------------------------------ 2025-09-08T09:13:43,495 pydensecrf/densecrf.pxd:57:34: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,495 Error compiling Cython file: 2025-09-08T09:13:43,495 ------------------------------------------------------------ 2025-09-08T09:13:43,495 ... 2025-09-08T09:13:43,495 # TODO 2025-09-08T09:13:43,496 #void addPairwiseEnergy(PairwisePotential *potential) 2025-09-08T09:13:43,496 void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType) 2025-09-08T09:13:43,496 void setUnaryEnergy(UnaryEnergy *unary) 2025-09-08T09:13:43,496 void setUnaryEnergy(const c_MatrixXf &unary) 2025-09-08T09:13:43,496 void setUnaryEnergy(const c_MatrixXf &L, const c_MatrixXf &feature) 2025-09-08T09:13:43,496 ^ 2025-09-08T09:13:43,496 ------------------------------------------------------------ 2025-09-08T09:13:43,496 pydensecrf/densecrf.pxd:57:55: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,496 Error compiling Cython file: 2025-09-08T09:13:43,497 ------------------------------------------------------------ 2025-09-08T09:13:43,497 ... 2025-09-08T09:13:43,497 void setUnaryEnergy(UnaryEnergy *unary) 2025-09-08T09:13:43,497 void setUnaryEnergy(const c_MatrixXf &unary) 2025-09-08T09:13:43,497 void setUnaryEnergy(const c_MatrixXf &L, const c_MatrixXf &feature) 2025-09-08T09:13:43,497 # Inference methods. 2025-09-08T09:13:43,497 c_MatrixXf inference(int n_iterations) 2025-09-08T09:13:43,497 ^ 2025-09-08T09:13:43,497 ------------------------------------------------------------ 2025-09-08T09:13:43,498 pydensecrf/densecrf.pxd:60:8: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,498 Error compiling Cython file: 2025-09-08T09:13:43,498 ------------------------------------------------------------ 2025-09-08T09:13:43,498 ... 2025-09-08T09:13:43,498 c_MatrixXf inference(int n_iterations) 2025-09-08T09:13:43,498 # TODO: Not enabled because it would require wrapping VectorXs (note the `s`) 2025-09-08T09:13:43,498 #c_VectorXs map(int n_iterations) 2025-09-08T09:13:43,498 # Step-by-step inference methods. 2025-09-08T09:13:43,498 c_MatrixXf startInference() const 2025-09-08T09:13:43,499 ^ 2025-09-08T09:13:43,499 ------------------------------------------------------------ 2025-09-08T09:13:43,499 pydensecrf/densecrf.pxd:65:8: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,499 Error compiling Cython file: 2025-09-08T09:13:43,499 ------------------------------------------------------------ 2025-09-08T09:13:43,499 ... 2025-09-08T09:13:43,499 # TODO: Not enabled because it would require wrapping VectorXs (note the `s`) 2025-09-08T09:13:43,499 #c_VectorXs map(int n_iterations) 2025-09-08T09:13:43,500 # Step-by-step inference methods. 2025-09-08T09:13:43,500 c_MatrixXf startInference() const 2025-09-08T09:13:43,500 void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const 2025-09-08T09:13:43,500 ^ 2025-09-08T09:13:43,500 ------------------------------------------------------------ 2025-09-08T09:13:43,500 pydensecrf/densecrf.pxd:66:27: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,500 Error compiling Cython file: 2025-09-08T09:13:43,500 ------------------------------------------------------------ 2025-09-08T09:13:43,501 ... 2025-09-08T09:13:43,501 # TODO: Not enabled because it would require wrapping VectorXs (note the `s`) 2025-09-08T09:13:43,501 #c_VectorXs map(int n_iterations) 2025-09-08T09:13:43,501 # Step-by-step inference methods. 2025-09-08T09:13:43,501 c_MatrixXf startInference() const 2025-09-08T09:13:43,501 void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const 2025-09-08T09:13:43,501 ^ 2025-09-08T09:13:43,501 ------------------------------------------------------------ 2025-09-08T09:13:43,501 pydensecrf/densecrf.pxd:66:42: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,502 Error compiling Cython file: 2025-09-08T09:13:43,502 ------------------------------------------------------------ 2025-09-08T09:13:43,502 ... 2025-09-08T09:13:43,502 # TODO: Not enabled because it would require wrapping VectorXs (note the `s`) 2025-09-08T09:13:43,502 #c_VectorXs map(int n_iterations) 2025-09-08T09:13:43,502 # Step-by-step inference methods. 2025-09-08T09:13:43,502 c_MatrixXf startInference() const 2025-09-08T09:13:43,502 void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const 2025-09-08T09:13:43,502 ^ 2025-09-08T09:13:43,503 ------------------------------------------------------------ 2025-09-08T09:13:43,503 pydensecrf/densecrf.pxd:66:60: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,503 Error compiling Cython file: 2025-09-08T09:13:43,503 ------------------------------------------------------------ 2025-09-08T09:13:43,503 ... 2025-09-08T09:13:43,503 # Step-by-step inference methods. 2025-09-08T09:13:43,503 c_MatrixXf startInference() const 2025-09-08T09:13:43,503 void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const 2025-09-08T09:13:43,503 #double gradient( int n_iterations, const ObjectiveFunction & objective, c_VectorXf * unary_grad, c_VectorXf * lbl_cmp_grad, c_VectorXf * kernel_grad=NULL ) const; 2025-09-08T09:13:43,504 double klDivergence(const c_MatrixXf &Q) const 2025-09-08T09:13:43,504 ^ 2025-09-08T09:13:43,504 ------------------------------------------------------------ 2025-09-08T09:13:43,504 pydensecrf/densecrf.pxd:69:34: 'c_MatrixXf' is not a type identifier 2025-09-08T09:13:43,526 warning: pydensecrf/densecrf.pyx:20:4: Unreachable code 2025-09-08T09:13:43,993 Error compiling Cython file: 2025-09-08T09:13:43,993 ------------------------------------------------------------ 2025-09-08T09:13:43,993 ... 2025-09-08T09:13:43,993 return eigen.MatrixXf().wrap(self._this.inference(niter)) 2025-09-08T09:13:43,993 def startInference(self): 2025-09-08T09:13:43,993 return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf() 2025-09-08T09:13:43,993 def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2): 2025-09-08T09:13:43,993 ^ 2025-09-08T09:13:43,994 ------------------------------------------------------------ 2025-09-08T09:13:43,994 pydensecrf/densecrf.pyx:97:28: 'MatrixXf' is not a type identifier 2025-09-08T09:13:43,994 Error compiling Cython file: 2025-09-08T09:13:43,994 ------------------------------------------------------------ 2025-09-08T09:13:43,994 ... 2025-09-08T09:13:43,994 return eigen.MatrixXf().wrap(self._this.inference(niter)) 2025-09-08T09:13:43,995 def startInference(self): 2025-09-08T09:13:43,995 return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf() 2025-09-08T09:13:43,995 def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2): 2025-09-08T09:13:43,995 ^ 2025-09-08T09:13:43,995 ------------------------------------------------------------ 2025-09-08T09:13:43,995 pydensecrf/densecrf.pyx:97:40: 'MatrixXf' is not a type identifier 2025-09-08T09:13:43,995 Error compiling Cython file: 2025-09-08T09:13:43,996 ------------------------------------------------------------ 2025-09-08T09:13:43,996 ... 2025-09-08T09:13:43,996 return eigen.MatrixXf().wrap(self._this.inference(niter)) 2025-09-08T09:13:43,996 def startInference(self): 2025-09-08T09:13:43,996 return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf() 2025-09-08T09:13:43,996 def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2): 2025-09-08T09:13:43,996 ^ 2025-09-08T09:13:43,996 ------------------------------------------------------------ 2025-09-08T09:13:43,996 pydensecrf/densecrf.pyx:97:55: 'MatrixXf' is not a type identifier 2025-09-08T09:13:43,997 Error compiling Cython file: 2025-09-08T09:13:43,997 ------------------------------------------------------------ 2025-09-08T09:13:43,997 ... 2025-09-08T09:13:43,997 return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf() 2025-09-08T09:13:43,997 def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2): 2025-09-08T09:13:43,997 self._this.stepInference(Q.m, tmp1.m, tmp2.m) 2025-09-08T09:13:43,997 def klDivergence(self, MatrixXf Q): 2025-09-08T09:13:43,997 ^ 2025-09-08T09:13:43,998 ------------------------------------------------------------ 2025-09-08T09:13:43,998 pydensecrf/densecrf.pyx:100:27: 'MatrixXf' is not a type identifier 2025-09-08T09:13:45,046 Traceback (most recent call last): 2025-09-08T09:13:45,048 File "", line 2, in 2025-09-08T09:13:45,048 exec(compile(''' 2025-09-08T09:13:45,048 ~~~~^^^^^^^^^^^^ 2025-09-08T09:13:45,048 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:13:45,048 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,049 ...<32 lines>... 2025-09-08T09:13:45,049 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:13:45,049 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,049 ''' % ('/tmp/pip-wheel-2k6oq109/pydensecrf_7bc43695ebed4e7eab6d5106c68033a7/setup.py',), "", "exec")) 2025-09-08T09:13:45,049 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,049 File "", line 35, in 2025-09-08T09:13:45,049 File "/tmp/pip-wheel-2k6oq109/pydensecrf_7bc43695ebed4e7eab6d5106c68033a7/setup.py", line 13, in 2025-09-08T09:13:45,049 ext_modules = cythonize(['pydensecrf/eigen.pyx', 'pydensecrf/densecrf.pyx']) 2025-09-08T09:13:45,049 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T09:13:45,050 cythonize_one(*args) 2025-09-08T09:13:45,050 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T09:13:45,050 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T09:13:45,050 raise CompileError(None, pyx_file) 2025-09-08T09:13:45,050 Cython.Compiler.Errors.CompileError: pydensecrf/densecrf.pyx 2025-09-08T09:13:45,050 Compiling pydensecrf/eigen.pyx because it changed. 2025-09-08T09:13:45,050 Compiling pydensecrf/densecrf.pyx because it changed. 2025-09-08T09:13:45,050 [1/2] Cythonizing pydensecrf/densecrf.pyx 2025-09-08T09:13:45,474 ERROR: python setup.py egg_info exited with 1 2025-09-08T09:13:45,485 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T09:13:45,485 exec(compile('"'"''"'"''"'"' 2025-09-08T09:13:45,485 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:13:45,485 # 2025-09-08T09:13:45,485 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T09:13:45,485 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T09:13:45,485 # - It provides a clear error message when setuptools is not installed. 2025-09-08T09:13:45,485 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T09:13:45,485 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T09:13:45,485 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T09:13:45,485 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T09:13:45,485 import os, sys, tokenize, traceback 2025-09-08T09:13:45,485 2025-09-08T09:13:45,485 try: 2025-09-08T09:13:45,485 import setuptools 2025-09-08T09:13:45,485 except ImportError: 2025-09-08T09:13:45,485 print( 2025-09-08T09:13:45,485 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T09:13:45,485 "the build environment with exception:", 2025-09-08T09:13:45,485 file=sys.stderr, 2025-09-08T09:13:45,485 ) 2025-09-08T09:13:45,485 traceback.print_exc() 2025-09-08T09:13:45,485 sys.exit(1) 2025-09-08T09:13:45,485 2025-09-08T09:13:45,485 __file__ = %r 2025-09-08T09:13:45,485 sys.argv[0] = __file__ 2025-09-08T09:13:45,485 2025-09-08T09:13:45,485 if os.path.exists(__file__): 2025-09-08T09:13:45,485 filename = __file__ 2025-09-08T09:13:45,485 with tokenize.open(__file__) as f: 2025-09-08T09:13:45,485 setup_py_code = f.read() 2025-09-08T09:13:45,485 else: 2025-09-08T09:13:45,485 filename = "" 2025-09-08T09:13:45,485 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T09:13:45,485 2025-09-08T09:13:45,485 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:13:45,485 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-2k6oq109/pydensecrf_7bc43695ebed4e7eab6d5106c68033a7/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-r4lixcp4[/] 2025-09-08T09:13:45,486 [bold magenta]cwd[/]: /tmp/pip-wheel-2k6oq109/pydensecrf_7bc43695ebed4e7eab6d5106c68033a7/ 2025-09-08T09:13:45,486 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T09:13:45,487 ERROR: metadata generation failed 2025-09-08T09:13:45,491 Exception information: 2025-09-08T09:13:45,491 Traceback (most recent call last): 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T09:13:45,491 call_subprocess( 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~~~^ 2025-09-08T09:13:45,491 args, 2025-09-08T09:13:45,491 ^^^^^ 2025-09-08T09:13:45,491 ...<2 lines>... 2025-09-08T09:13:45,491 spinner=spinner, 2025-09-08T09:13:45,491 ^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 ) 2025-09-08T09:13:45,491 ^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T09:13:45,491 raise error 2025-09-08T09:13:45,491 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T09:13:45,491 2025-09-08T09:13:45,491 The above exception was the direct cause of the following exception: 2025-09-08T09:13:45,491 2025-09-08T09:13:45,491 Traceback (most recent call last): 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T09:13:45,491 status = _inner_run() 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T09:13:45,491 return self.run(options, args) 2025-09-08T09:13:45,491 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T09:13:45,491 return func(self, options, args) 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T09:13:45,491 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T09:13:45,491 result = self._result = resolver.resolve( 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~~~~^ 2025-09-08T09:13:45,491 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T09:13:45,491 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 ) 2025-09-08T09:13:45,491 ^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T09:13:45,491 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T09:13:45,491 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T09:13:45,491 if not criterion.candidates: 2025-09-08T09:13:45,491 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T09:13:45,491 return bool(self._sequence) 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T09:13:45,491 self._bool = any(self) 2025-09-08T09:13:45,491 ~~~^^^^^^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T09:13:45,491 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T09:13:45,491 ^^^^^^^^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T09:13:45,491 candidate = func() 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T09:13:45,491 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T09:13:45,491 link, template, name, version 2025-09-08T09:13:45,491 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 ) 2025-09-08T09:13:45,491 ^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T09:13:45,491 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~^ 2025-09-08T09:13:45,491 link, 2025-09-08T09:13:45,491 ^^^^^ 2025-09-08T09:13:45,491 ...<3 lines>... 2025-09-08T09:13:45,491 version=version, 2025-09-08T09:13:45,491 ^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 ) 2025-09-08T09:13:45,491 ^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T09:13:45,491 super().__init__( 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~~~~^ 2025-09-08T09:13:45,491 link=link, 2025-09-08T09:13:45,491 ^^^^^^^^^^ 2025-09-08T09:13:45,491 ...<4 lines>... 2025-09-08T09:13:45,491 version=version, 2025-09-08T09:13:45,491 ^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 ) 2025-09-08T09:13:45,491 ^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T09:13:45,491 self.dist = self._prepare() 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~^^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T09:13:45,491 dist = self._prepare_distribution() 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T09:13:45,491 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T09:13:45,491 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T09:13:45,491 dist = _get_prepared_distribution( 2025-09-08T09:13:45,491 req, 2025-09-08T09:13:45,491 ...<3 lines>... 2025-09-08T09:13:45,491 self.check_build_deps, 2025-09-08T09:13:45,491 ) 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T09:13:45,491 abstract_dist.prepare_distribution_metadata( 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T09:13:45,491 finder, build_isolation, check_build_deps 2025-09-08T09:13:45,491 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 ) 2025-09-08T09:13:45,491 ^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T09:13:45,491 self.req.prepare_metadata() 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T09:13:45,491 self.metadata_directory = generate_metadata_legacy( 2025-09-08T09:13:45,491 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T09:13:45,491 build_env=self.build_env, 2025-09-08T09:13:45,491 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 ...<3 lines>... 2025-09-08T09:13:45,491 details=details, 2025-09-08T09:13:45,491 ^^^^^^^^^^^^^^^^ 2025-09-08T09:13:45,491 ) 2025-09-08T09:13:45,491 ^ 2025-09-08T09:13:45,491 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T09:13:45,491 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T09:13:45,491 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T09:13:45,511 Removed pydensecrf==1.0rc2 from https://files.pythonhosted.org/packages/dd/11/7a79e817078323893f8071bb3fda1f45e34e443ec4a0790f8542158bbced/pydensecrf-1.0rc2.tar.gz from build tracker '/tmp/pip-build-tracker-dgyq9d0x' 2025-09-08T09:13:45,512 Removed build tracker: '/tmp/pip-build-tracker-dgyq9d0x'