2025-09-08T09:28:42,650 Created temporary directory: /tmp/pip-build-tracker-0j5zakji 2025-09-08T09:28:42,651 Initialized build tracking at /tmp/pip-build-tracker-0j5zakji 2025-09-08T09:28:42,651 Created build tracker: /tmp/pip-build-tracker-0j5zakji 2025-09-08T09:28:42,651 Entered build tracker: /tmp/pip-build-tracker-0j5zakji 2025-09-08T09:28:42,651 Created temporary directory: /tmp/pip-wheel-hs67pnv8 2025-09-08T09:28:42,655 Created temporary directory: /tmp/pip-ephem-wheel-cache-t8gyl8kq 2025-09-08T09:28:42,723 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T09:28:42,725 2 location(s) to search for versions of yaff: 2025-09-08T09:28:42,725 * https://pypi.org/simple/yaff/ 2025-09-08T09:28:42,725 * https://www.piwheels.org/simple/yaff/ 2025-09-08T09:28:42,726 Fetching project page and analyzing links: https://pypi.org/simple/yaff/ 2025-09-08T09:28:42,726 Getting page https://pypi.org/simple/yaff/ 2025-09-08T09:28:42,727 Found index url https://pypi.org/simple/ 2025-09-08T09:28:42,799 Fetched page https://pypi.org/simple/yaff/ as application/vnd.pypi.simple.v1+json 2025-09-08T09:28:42,800 Found link https://files.pythonhosted.org/packages/c9/f2/047512dde0eb54740406d6a712e96dc03731293ea4cd729be862bf81b6e4/yaff-1.2.0.tar.gz (from https://pypi.org/simple/yaff/), version: 1.2.0 2025-09-08T09:28:42,800 Found link https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz (from https://pypi.org/simple/yaff/), version: 1.3.0 2025-09-08T09:28:42,801 Found link https://files.pythonhosted.org/packages/18/d1/80fd22fb23b0991a9f09a7efc0f163d764205bac1eaed4fa6b322a6f7482/yaff-1.4.0.tar.gz (from https://pypi.org/simple/yaff/), version: 1.4.0 2025-09-08T09:28:42,801 Found link https://files.pythonhosted.org/packages/10/fd/8c080b0443c8d200c4dd06378adc1a6877c31c2ecf6f4a41c9be8c73d8a0/yaff-1.4.1.tar.gz (from https://pypi.org/simple/yaff/), version: 1.4.1 2025-09-08T09:28:42,801 Found link https://files.pythonhosted.org/packages/3f/21/6269a78287d1b3efce078e0f81566a9e5d2106655a35b83cc2b35eab69e7/yaff-1.4.2.tar.gz (from https://pypi.org/simple/yaff/), version: 1.4.2 2025-09-08T09:28:42,801 Fetching project page and analyzing links: https://www.piwheels.org/simple/yaff/ 2025-09-08T09:28:42,802 Getting page https://www.piwheels.org/simple/yaff/ 2025-09-08T09:28:42,802 Found index url https://www.piwheels.org/simple/ 2025-09-08T09:28:42,897 Fetched page https://www.piwheels.org/simple/yaff/ as text/html 2025-09-08T09:28:42,902 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp35-cp35m-linux_armv7l.whl#sha256=05eeae8318b3bf4a5161fdecb47dc62633b3977a877445f48901fba4d349fa94 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,902 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp35-cp35m-linux_armv6l.whl#sha256=05eeae8318b3bf4a5161fdecb47dc62633b3977a877445f48901fba4d349fa94 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,902 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp37-cp37m-linux_armv6l.whl#sha256=34b102088d7f75b099d713c83f48230bad7356bda4047a4970465151b3d3045d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,903 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp37-cp37m-linux_armv7l.whl#sha256=34b102088d7f75b099d713c83f48230bad7356bda4047a4970465151b3d3045d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,903 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp39-cp39-linux_armv6l.whl#sha256=9b0058e42bbfc37e4e09b5e25437de94436624c799a0915e1c7fac3195c2ad09 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,903 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.2-cp39-cp39-linux_armv7l.whl#sha256=9b0058e42bbfc37e4e09b5e25437de94436624c799a0915e1c7fac3195c2ad09 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,903 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp37-cp37m-linux_armv7l.whl#sha256=ee39b976fef8e83eaebb43b270fcc7fe279dcae59a1afe3fb071231c58a3f73d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,903 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp37-cp37m-linux_armv6l.whl#sha256=ee39b976fef8e83eaebb43b270fcc7fe279dcae59a1afe3fb071231c58a3f73d (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,903 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp35-cp35m-linux_armv7l.whl#sha256=2299cea4af208ca4f7fe708aedf1580770206c4ef50adddf03bc79243770b251 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,903 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp35-cp35m-linux_armv6l.whl#sha256=2299cea4af208ca4f7fe708aedf1580770206c4ef50adddf03bc79243770b251 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,904 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp39-cp39-linux_armv6l.whl#sha256=32dd02a0a69308ed168af1cefa72335d7eec599ada71910d97ea22b17dfd4703 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,904 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.1-cp39-cp39-linux_armv7l.whl#sha256=32dd02a0a69308ed168af1cefa72335d7eec599ada71910d97ea22b17dfd4703 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,904 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp37-cp37m-linux_armv7l.whl#sha256=2ea621f98879ef71738a38a79c95c9f10f4f49cf4e3d791c9f6dfe60ddaf1e02 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,904 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp37-cp37m-linux_armv6l.whl#sha256=2ea621f98879ef71738a38a79c95c9f10f4f49cf4e3d791c9f6dfe60ddaf1e02 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,904 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp39-cp39-linux_armv6l.whl#sha256=791724fa64558c54f8b3181c8b84bc2540c74f788528493ae829a996173c200c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,904 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.4.0-cp39-cp39-linux_armv7l.whl#sha256=791724fa64558c54f8b3181c8b84bc2540c74f788528493ae829a996173c200c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,904 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp37-cp37m-linux_armv6l.whl#sha256=321de664d883048ebdcc2058ac271776c195e16e3ccd52b5c99a3efb06ddfe36 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,904 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp37-cp37m-linux_armv7l.whl#sha256=321de664d883048ebdcc2058ac271776c195e16e3ccd52b5c99a3efb06ddfe36 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,905 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp35-cp35m-linux_armv7l.whl#sha256=fd1021a4087710d708884595b480e84cabb77750568fc9624d0967670c7c7cce (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,905 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp35-cp35m-linux_armv6l.whl#sha256=fd1021a4087710d708884595b480e84cabb77750568fc9624d0967670c7c7cce (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,905 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp39-cp39-linux_armv6l.whl#sha256=b7d58b67c3e944f93f1d908241a4438f074f69a0aecb3624519814faa0e9132c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,905 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.3.0-cp39-cp39-linux_armv7l.whl#sha256=b7d58b67c3e944f93f1d908241a4438f074f69a0aecb3624519814faa0e9132c (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,905 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp37-cp37m-linux_armv6l.whl#sha256=7fd5902f3f017a76bce6f931cf1f474dc3220aa18e663b8060e578b7ef94907a (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,905 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp37-cp37m-linux_armv7l.whl#sha256=7fd5902f3f017a76bce6f931cf1f474dc3220aa18e663b8060e578b7ef94907a (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,905 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp35-cp35m-linux_armv6l.whl#sha256=0e866c86ae0c7d8de5f473f7d81042a6f686c00ccb586ff5349ecdd5eb147303 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,905 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp35-cp35m-linux_armv7l.whl#sha256=0e866c86ae0c7d8de5f473f7d81042a6f686c00ccb586ff5349ecdd5eb147303 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,906 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp39-cp39-linux_armv6l.whl#sha256=a0834da5b114cd8972c0201df0b08bd9b2b7c81fe36ccadd1e2427262b85f8c6 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,906 Skipping link: No binaries permitted for yaff: https://archive1.piwheels.org/simple/yaff/yaff-1.2.0-cp39-cp39-linux_armv7l.whl#sha256=a0834da5b114cd8972c0201df0b08bd9b2b7c81fe36ccadd1e2427262b85f8c6 (from https://www.piwheels.org/simple/yaff/) 2025-09-08T09:28:42,906 Skipping link: not a file: https://www.piwheels.org/simple/yaff/ 2025-09-08T09:28:42,906 Skipping link: not a file: https://pypi.org/simple/yaff/ 2025-09-08T09:28:42,929 Given no hashes to check 1 links for project 'yaff': discarding no candidates 2025-09-08T09:28:42,930 Collecting yaff==1.4.2 2025-09-08T09:28:42,931 Created temporary directory: /tmp/pip-unpack-f2fs30sr 2025-09-08T09:28:43,288 Downloading yaff-1.4.2.tar.gz (654 kB) 2025-09-08T09:28:43,539 Added yaff==1.4.2 from https://files.pythonhosted.org/packages/3f/21/6269a78287d1b3efce078e0f81566a9e5d2106655a35b83cc2b35eab69e7/yaff-1.4.2.tar.gz to build tracker '/tmp/pip-build-tracker-0j5zakji' 2025-09-08T09:28:43,540 Running setup.py (path:/tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/setup.py) egg_info for package yaff 2025-09-08T09:28:43,541 Created temporary directory: /tmp/pip-pip-egg-info-c5wlnu1r 2025-09-08T09:28:43,541 Preparing metadata (setup.py): started 2025-09-08T09:28:43,542 Running command python setup.py egg_info 2025-09-08T09:28:44,484 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T09:28:44,484 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T09:28:44,602 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T09:28:44,602 !! 2025-09-08T09:28:44,603 ******************************************************************************** 2025-09-08T09:28:44,603 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T09:28:44,603 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T09:28:44,603 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T09:28:44,603 or your builds will no longer be supported. 2025-09-08T09:28:44,603 ******************************************************************************** 2025-09-08T09:28:44,603 !! 2025-09-08T09:28:44,604 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T09:28:44,974 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:28:44,974 !! 2025-09-08T09:28:44,974 ******************************************************************************** 2025-09-08T09:28:44,974 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:28:44,974 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-09-08T09:28:44,975 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:28:44,975 ******************************************************************************** 2025-09-08T09:28:44,975 !! 2025-09-08T09:28:44,975 self._finalize_license_expression() 2025-09-08T09:28:45,050 Trying to get the version from git describe 2025-09-08T09:28:45,050 Trying to get the version from {} /tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/yaff/version.py 2025-09-08T09:28:45,050 Version according to /tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/yaff/version.py: 1.4.2 2025-09-08T09:28:45,050 running egg_info 2025-09-08T09:28:45,126 creating /tmp/pip-pip-egg-info-c5wlnu1r/yaff.egg-info 2025-09-08T09:28:45,126 writing /tmp/pip-pip-egg-info-c5wlnu1r/yaff.egg-info/PKG-INFO 2025-09-08T09:28:45,127 writing dependency_links to /tmp/pip-pip-egg-info-c5wlnu1r/yaff.egg-info/dependency_links.txt 2025-09-08T09:28:45,128 writing requirements to /tmp/pip-pip-egg-info-c5wlnu1r/yaff.egg-info/requires.txt 2025-09-08T09:28:45,128 writing top-level names to /tmp/pip-pip-egg-info-c5wlnu1r/yaff.egg-info/top_level.txt 2025-09-08T09:28:45,129 writing manifest file '/tmp/pip-pip-egg-info-c5wlnu1r/yaff.egg-info/SOURCES.txt' 2025-09-08T09:28:45,440 reading manifest file '/tmp/pip-pip-egg-info-c5wlnu1r/yaff.egg-info/SOURCES.txt' 2025-09-08T09:28:45,441 reading manifest template 'MANIFEST.in' 2025-09-08T09:28:45,441 warning: no files found matching 'README' 2025-09-08T09:28:45,442 warning: no files found matching 'LICENSE.txt' 2025-09-08T09:28:45,489 warning: no previously-included files matching 'ext.c' found under directory 'yaff' 2025-09-08T09:28:45,506 writing manifest file '/tmp/pip-pip-egg-info-c5wlnu1r/yaff.egg-info/SOURCES.txt' 2025-09-08T09:28:45,653 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T09:28:45,658 Source in /tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e has version 1.4.2, which satisfies requirement yaff==1.4.2 from https://files.pythonhosted.org/packages/3f/21/6269a78287d1b3efce078e0f81566a9e5d2106655a35b83cc2b35eab69e7/yaff-1.4.2.tar.gz 2025-09-08T09:28:45,658 Removed yaff==1.4.2 from https://files.pythonhosted.org/packages/3f/21/6269a78287d1b3efce078e0f81566a9e5d2106655a35b83cc2b35eab69e7/yaff-1.4.2.tar.gz from build tracker '/tmp/pip-build-tracker-0j5zakji' 2025-09-08T09:28:45,663 Created temporary directory: /tmp/pip-unpack-mo1l7_oe 2025-09-08T09:28:45,664 Created temporary directory: /tmp/pip-unpack-yefxmtio 2025-09-08T09:28:45,664 Building wheels for collected packages: yaff 2025-09-08T09:28:45,665 Created temporary directory: /tmp/pip-wheel-cr_txl5w 2025-09-08T09:28:45,666 DEPRECATION: Building 'yaff' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'yaff'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T09:28:45,667 Building wheel for yaff (setup.py): started 2025-09-08T09:28:45,668 Destination directory: /tmp/pip-wheel-cr_txl5w 2025-09-08T09:28:45,668 Running command python setup.py bdist_wheel 2025-09-08T09:28:46,583 Trying to get the version from git describe 2025-09-08T09:28:46,589 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T09:28:46,589 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T09:28:46,590 Trying to get the version from {} /tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/yaff/version.py 2025-09-08T09:28:46,590 Version according to /tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/yaff/version.py: 1.4.2 2025-09-08T09:28:46,711 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T09:28:46,711 !! 2025-09-08T09:28:46,711 ******************************************************************************** 2025-09-08T09:28:46,711 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T09:28:46,711 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T09:28:46,711 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T09:28:46,712 or your builds will no longer be supported. 2025-09-08T09:28:46,712 ******************************************************************************** 2025-09-08T09:28:46,712 !! 2025-09-08T09:28:46,712 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T09:28:47,088 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:28:47,088 !! 2025-09-08T09:28:47,088 ******************************************************************************** 2025-09-08T09:28:47,089 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:28:47,089 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-09-08T09:28:47,089 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:28:47,089 ******************************************************************************** 2025-09-08T09:28:47,089 !! 2025-09-08T09:28:47,089 self._finalize_license_expression() 2025-09-08T09:28:47,090 running bdist_wheel 2025-09-08T09:28:47,387 running build 2025-09-08T09:28:47,387 running build_py 2025-09-08T09:28:47,465 creating build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:28:47,465 copying yaff/version.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:28:47,466 copying yaff/system.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:28:47,467 copying yaff/log.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:28:47,467 copying yaff/atselect.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:28:47,468 copying yaff/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff 2025-09-08T09:28:47,469 creating build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:28:47,469 copying yaff/test/test_system.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:28:47,469 copying yaff/test/test_examples.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:28:47,470 copying yaff/test/test_atselect.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:28:47,471 copying yaff/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:28:47,471 copying yaff/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/test 2025-09-08T09:28:47,472 creating build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,472 copying yaff/pes/vlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,473 copying yaff/pes/scaling.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,474 copying yaff/pes/parameters.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,474 copying yaff/pes/nlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,475 copying yaff/pes/iclist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,475 copying yaff/pes/generator.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,476 copying yaff/pes/ff.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,477 copying yaff/pes/dlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,477 copying yaff/pes/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,478 creating build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,478 copying yaff/pes/test/test_vlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,479 copying yaff/pes/test/test_truncation.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,480 copying yaff/pes/test/test_topology.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,480 copying yaff/pes/test/test_scaling.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,481 copying yaff/pes/test/test_pext.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,481 copying yaff/pes/test/test_parameters.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,482 copying yaff/pes/test/test_pair_pot.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,482 copying yaff/pes/test/test_nlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,483 copying yaff/pes/test/test_md.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,483 copying yaff/pes/test/test_iclist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,484 copying yaff/pes/test/test_grid.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,484 copying yaff/pes/test/test_generator.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,485 copying yaff/pes/test/test_ewald.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,486 copying yaff/pes/test/test_dlist.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,486 copying yaff/pes/test/test_cell.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,487 copying yaff/pes/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,487 copying yaff/pes/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/pes/test 2025-09-08T09:28:47,488 creating build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,488 copying yaff/sampling/verlet.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,489 copying yaff/sampling/utils.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,490 copying yaff/sampling/trajectory.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,490 copying yaff/sampling/opt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,491 copying yaff/sampling/nvt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,491 copying yaff/sampling/npt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,492 copying yaff/sampling/iterative.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,492 copying yaff/sampling/io.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,493 copying yaff/sampling/harmonic.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,494 copying yaff/sampling/dof.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,494 copying yaff/sampling/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling 2025-09-08T09:28:47,495 creating build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:28:47,495 copying yaff/sampling/test/test_verlet.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:28:47,496 copying yaff/sampling/test/test_utils.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:28:47,496 copying yaff/sampling/test/test_opt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:28:47,497 copying yaff/sampling/test/test_nvt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:28:47,497 copying yaff/sampling/test/test_npt.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:28:47,498 copying yaff/sampling/test/test_harmonic.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:28:47,498 copying yaff/sampling/test/test_dof.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:28:47,499 copying yaff/sampling/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:28:47,499 copying yaff/sampling/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/sampling/test 2025-09-08T09:28:47,500 creating build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:28:47,501 copying yaff/analysis/utils.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:28:47,501 copying yaff/analysis/spectrum.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:28:47,502 copying yaff/analysis/rdf.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:28:47,502 copying yaff/analysis/pca.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:28:47,503 copying yaff/analysis/hook.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:28:47,503 copying yaff/analysis/diffusion.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:28:47,504 copying yaff/analysis/blav.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:28:47,504 copying yaff/analysis/basic.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:28:47,505 copying yaff/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis 2025-09-08T09:28:47,506 creating build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:28:47,506 copying yaff/analysis/test/test_spectrum.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:28:47,507 copying yaff/analysis/test/test_rdf.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:28:47,507 copying yaff/analysis/test/test_diffusion.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:28:47,508 copying yaff/analysis/test/test_blav.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:28:47,508 copying yaff/analysis/test/test_basic.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:28:47,509 copying yaff/analysis/test/common.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:28:47,509 copying yaff/analysis/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/analysis/test 2025-09-08T09:28:47,510 creating build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:28:47,510 copying yaff/tune/transform.py -> build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:28:47,511 copying yaff/tune/cost.py -> build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:28:47,511 copying yaff/tune/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/tune 2025-09-08T09:28:47,512 creating build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:28:47,512 copying yaff/tune/test/test_transform.py -> build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:28:47,513 copying yaff/tune/test/test_cost.py -> build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:28:47,513 copying yaff/tune/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/tune/test 2025-09-08T09:28:47,514 creating build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:28:47,514 copying yaff/conversion/xyz.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:28:47,515 copying yaff/conversion/gaussian.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:28:47,515 copying yaff/conversion/dlpoly.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:28:47,516 copying yaff/conversion/cp2k.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:28:47,516 copying yaff/conversion/common.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:28:47,517 copying yaff/conversion/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion 2025-09-08T09:28:47,518 creating build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:28:47,518 copying yaff/conversion/test/test_xyz.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:28:47,518 copying yaff/conversion/test/test_gaussian.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:28:47,519 copying yaff/conversion/test/test_dlpoly.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:28:47,519 copying yaff/conversion/test/test_cp2k.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:28:47,520 copying yaff/conversion/test/__init__.py -> build/lib.linux-armv7l-cpython-313/yaff/conversion/test 2025-09-08T09:28:47,520 running egg_info 2025-09-08T09:28:47,593 writing yaff.egg-info/PKG-INFO 2025-09-08T09:28:47,595 writing dependency_links to yaff.egg-info/dependency_links.txt 2025-09-08T09:28:47,595 writing requirements to yaff.egg-info/requires.txt 2025-09-08T09:28:47,596 writing top-level names to yaff.egg-info/top_level.txt 2025-09-08T09:28:47,678 reading manifest file 'yaff.egg-info/SOURCES.txt' 2025-09-08T09:28:47,691 reading manifest template 'MANIFEST.in' 2025-09-08T09:28:47,692 warning: no files found matching 'README' 2025-09-08T09:28:47,692 warning: no files found matching 'LICENSE.txt' 2025-09-08T09:28:47,739 warning: no previously-included files matching 'ext.c' found under directory 'yaff' 2025-09-08T09:28:47,757 writing manifest file 'yaff.egg-info/SOURCES.txt' 2025-09-08T09:28:47,759 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'yaff.data.opttest' is absent from the `packages` configuration. 2025-09-08T09:28:47,759 !! 2025-09-08T09:28:47,759 ******************************************************************************** 2025-09-08T09:28:47,760 ############################ 2025-09-08T09:28:47,760 # Package would be ignored # 2025-09-08T09:28:47,760 ############################ 2025-09-08T09:28:47,760 Python recognizes 'yaff.data.opttest' as an importable package[^1], 2025-09-08T09:28:47,760 but it is absent from setuptools' `packages` configuration. 2025-09-08T09:28:47,760 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T09:28:47,760 package, please make sure that 'yaff.data.opttest' is explicitly added 2025-09-08T09:28:47,760 to the `packages` configuration field. 2025-09-08T09:28:47,760 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T09:28:47,760 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T09:28:47,761 instead of `find_packages(...)`/`find:`). 2025-09-08T09:28:47,761 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T09:28:47,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T09:28:47,761 If you don't want 'yaff.data.opttest' to be distributed and are 2025-09-08T09:28:47,761 already explicitly excluding 'yaff.data.opttest' via 2025-09-08T09:28:47,761 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T09:28:47,761 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T09:28:47,761 combination with a more fine grained `package-data` configuration. 2025-09-08T09:28:47,762 You can read more about "package data files" on setuptools documentation page: 2025-09-08T09:28:47,762 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T09:28:47,762 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T09:28:47,762 even if it does not contain any `.py` files. 2025-09-08T09:28:47,762 On the other hand, currently there is no concept of package data 2025-09-08T09:28:47,762 directory, all directories are treated like packages. 2025-09-08T09:28:47,762 ******************************************************************************** 2025-09-08T09:28:47,763 !! 2025-09-08T09:28:47,763 check.warn(importable) 2025-09-08T09:28:47,763 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'yaff.data.test' is absent from the `packages` configuration. 2025-09-08T09:28:47,763 !! 2025-09-08T09:28:47,763 ******************************************************************************** 2025-09-08T09:28:47,763 ############################ 2025-09-08T09:28:47,763 # Package would be ignored # 2025-09-08T09:28:47,763 ############################ 2025-09-08T09:28:47,763 Python recognizes 'yaff.data.test' as an importable package[^1], 2025-09-08T09:28:47,763 but it is absent from setuptools' `packages` configuration. 2025-09-08T09:28:47,764 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T09:28:47,764 package, please make sure that 'yaff.data.test' is explicitly added 2025-09-08T09:28:47,764 to the `packages` configuration field. 2025-09-08T09:28:47,764 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T09:28:47,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T09:28:47,764 instead of `find_packages(...)`/`find:`). 2025-09-08T09:28:47,764 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T09:28:47,765 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T09:28:47,765 If you don't want 'yaff.data.test' to be distributed and are 2025-09-08T09:28:47,765 already explicitly excluding 'yaff.data.test' via 2025-09-08T09:28:47,765 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T09:28:47,765 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T09:28:47,765 combination with a more fine grained `package-data` configuration. 2025-09-08T09:28:47,765 You can read more about "package data files" on setuptools documentation page: 2025-09-08T09:28:47,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T09:28:47,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T09:28:47,766 even if it does not contain any `.py` files. 2025-09-08T09:28:47,766 On the other hand, currently there is no concept of package data 2025-09-08T09:28:47,766 directory, all directories are treated like packages. 2025-09-08T09:28:47,766 ******************************************************************************** 2025-09-08T09:28:47,766 !! 2025-09-08T09:28:47,766 check.warn(importable) 2025-09-08T09:28:47,766 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'yaff.examples' is absent from the `packages` configuration. 2025-09-08T09:28:47,766 !! 2025-09-08T09:28:47,767 ******************************************************************************** 2025-09-08T09:28:47,767 ############################ 2025-09-08T09:28:47,767 # Package would be ignored # 2025-09-08T09:28:47,767 ############################ 2025-09-08T09:28:47,767 Python recognizes 'yaff.examples' as an importable package[^1], 2025-09-08T09:28:47,767 but it is absent from setuptools' `packages` configuration. 2025-09-08T09:28:47,767 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T09:28:47,767 package, please make sure that 'yaff.examples' is explicitly added 2025-09-08T09:28:47,767 to the `packages` configuration field. 2025-09-08T09:28:47,768 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T09:28:47,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T09:28:47,768 instead of `find_packages(...)`/`find:`). 2025-09-08T09:28:47,768 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T09:28:47,768 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T09:28:47,768 If you don't want 'yaff.examples' to be distributed and are 2025-09-08T09:28:47,768 already explicitly excluding 'yaff.examples' via 2025-09-08T09:28:47,768 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T09:28:47,768 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T09:28:47,769 combination with a more fine grained `package-data` configuration. 2025-09-08T09:28:47,769 You can read more about "package data files" on setuptools documentation page: 2025-09-08T09:28:47,769 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T09:28:47,769 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T09:28:47,769 even if it does not contain any `.py` files. 2025-09-08T09:28:47,769 On the other hand, currently there is no concept of package data 2025-09-08T09:28:47,769 directory, all directories are treated like packages. 2025-09-08T09:28:47,769 ******************************************************************************** 2025-09-08T09:28:47,770 !! 2025-09-08T09:28:47,770 check.warn(importable) 2025-09-08T09:28:47,773 creating build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,774 copying yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,774 copying yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,775 copying yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,776 copying yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,777 copying yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,777 copying yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,778 copying yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,778 copying yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,779 copying yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,780 copying yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,780 copying yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,781 copying yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,781 copying yaff/data/opttest/alpha_quartz.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,782 copying yaff/data/opttest/alpha_quartz_distorted.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,782 copying yaff/data/opttest/cases.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,783 copying yaff/data/opttest/merlonite_debug.pot -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,784 copying yaff/data/opttest/merlonite_fragment.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,785 copying yaff/data/opttest/merlonite_fragment_overbonded.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,786 copying yaff/data/opttest/water_dimer.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/opttest 2025-09-08T09:28:47,786 creating build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,786 copying yaff/data/test/chloro_pos.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,788 copying yaff/data/test/chloro_vol.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,789 copying yaff/data/test/cp2k-1.ener -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,789 copying yaff/data/test/dlpoly_HISTORY_an1 -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,790 copying yaff/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,790 copying yaff/data/test/dlpoly_HISTORY_sam -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,791 copying yaff/data/test/dlpoly_HISTORY_uo -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,791 copying yaff/data/test/gaussian_sioh4_md.log -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,792 copying yaff/data/test/gaussian_sioh4_md.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,792 copying yaff/data/test/guaianolide.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,793 copying yaff/data/test/guaianolide_framework_ordered.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,793 copying yaff/data/test/nobornane.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,794 copying yaff/data/test/parameters_alkane.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,795 copying yaff/data/test/parameters_bks.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,795 copying yaff/data/test/parameters_fake_d3bj.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,796 copying yaff/data/test/parameters_fake_dampdisp1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,796 copying yaff/data/test/parameters_fake_exprep1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,797 copying yaff/data/test/parameters_fake_lj.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,797 copying yaff/data/test/parameters_fake_mm3.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,798 copying yaff/data/test/parameters_fake_qmdffrep.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,798 copying yaff/data/test/parameters_fake_torsion1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,799 copying yaff/data/test/parameters_fake_torsion2.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,799 copying yaff/data/test/parameters_formaldehyde_cross.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,800 copying yaff/data/test/parameters_formaldehyde_cross_alt.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,800 copying yaff/data/test/parameters_formaldehyde_inversion.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,801 copying yaff/data/test/parameters_formaldehyde_wrong_cross.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,801 copying yaff/data/test/parameters_glycine_fixq.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,802 copying yaff/data/test/parameters_glycine_torsion.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,802 copying yaff/data/test/parameters_nacl.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,803 copying yaff/data/test/parameters_polyene.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,803 copying yaff/data/test/parameters_water.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,804 copying yaff/data/test/parameters_water_bendaharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,804 copying yaff/data/test/parameters_water_bendcharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,805 copying yaff/data/test/parameters_water_bondcross.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,805 copying yaff/data/test/parameters_water_bondfues.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,806 copying yaff/data/test/parameters_water_bondharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,806 copying yaff/data/test/parameters_water_cross.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,807 copying yaff/data/test/parameters_water_dampdisp1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,807 copying yaff/data/test/parameters_water_dampdisp2.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,808 copying yaff/data/test/parameters_water_exprep1.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,808 copying yaff/data/test/parameters_water_exprep2.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,809 copying yaff/data/test/parameters_water_exprep3.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,809 copying yaff/data/test/parameters_water_fixq.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,810 copying yaff/data/test/parameters_water_fixq_dielectric.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,810 copying yaff/data/test/parameters_water_lj.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,811 copying yaff/data/test/parameters_water_mm3.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,811 copying yaff/data/test/parameters_water_ubharm.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,812 copying yaff/data/test/parameters_water_wrong_cross.txt -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,812 copying yaff/data/test/rhodium_complex_nobornane.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,813 copying yaff/data/test/water_hessian.chk -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,813 copying yaff/data/test/water_trajectory.xyz -> build/lib.linux-armv7l-cpython-313/yaff/data/test 2025-09-08T09:28:47,814 creating build/lib.linux-armv7l-cpython-313/yaff/examples 2025-09-08T09:28:47,814 copying yaff/examples/.gitignore -> build/lib.linux-armv7l-cpython-313/yaff/examples 2025-09-08T09:28:47,815 creating build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:28:47,815 copying yaff/examples/000_overview/parameters.txt -> build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:28:47,816 copying yaff/examples/000_overview/simulation.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:28:47,816 copying yaff/examples/000_overview/system.chk -> build/lib.linux-armv7l-cpython-313/yaff/examples/000_overview 2025-09-08T09:28:47,817 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks 2025-09-08T09:28:47,817 copying yaff/examples/001_tutorial_bks/bks.pot -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks 2025-09-08T09:28:47,818 copying yaff/examples/001_tutorial_bks/runall.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks 2025-09-08T09:28:47,818 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:28:47,818 copying yaff/examples/001_tutorial_bks/init/mksystem.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:28:47,819 copying yaff/examples/001_tutorial_bks/init/rvecs.txt -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:28:47,819 copying yaff/examples/001_tutorial_bks/init/struct.xyz -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/init 2025-09-08T09:28:47,820 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/nvt 2025-09-08T09:28:47,820 copying yaff/examples/001_tutorial_bks/nvt/analysis.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/nvt 2025-09-08T09:28:47,821 copying yaff/examples/001_tutorial_bks/nvt/simulation.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/nvt 2025-09-08T09:28:47,821 creating build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/opt 2025-09-08T09:28:47,821 copying yaff/examples/001_tutorial_bks/opt/analysis.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/opt 2025-09-08T09:28:47,822 copying yaff/examples/001_tutorial_bks/opt/simulation.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/001_tutorial_bks/opt 2025-09-08T09:28:47,822 creating build/lib.linux-armv7l-cpython-313/yaff/examples/002_external_trajectory 2025-09-08T09:28:47,823 copying yaff/examples/002_external_trajectory/rdf.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/002_external_trajectory 2025-09-08T09:28:47,823 copying yaff/examples/002_external_trajectory/trajectory.xyz -> build/lib.linux-armv7l-cpython-313/yaff/examples/002_external_trajectory 2025-09-08T09:28:47,824 creating build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:28:47,824 copying yaff/examples/003_water_thermostat/md.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:28:47,825 copying yaff/examples/003_water_thermostat/parameters.txt -> build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:28:47,825 copying yaff/examples/003_water_thermostat/system.chk -> build/lib.linux-armv7l-cpython-313/yaff/examples/003_water_thermostat 2025-09-08T09:28:47,826 creating build/lib.linux-armv7l-cpython-313/yaff/examples/999_back_propagation 2025-09-08T09:28:47,826 copying yaff/examples/999_back_propagation/bp.py -> build/lib.linux-armv7l-cpython-313/yaff/examples/999_back_propagation 2025-09-08T09:28:47,826 copying yaff/pes/cell.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,827 copying yaff/pes/cell.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,827 copying yaff/pes/cell.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,828 copying yaff/pes/constants.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,828 copying yaff/pes/dlist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,829 copying yaff/pes/dlist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,829 copying yaff/pes/dlist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,830 copying yaff/pes/ewald.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,830 copying yaff/pes/ewald.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,831 copying yaff/pes/ewald.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,831 copying yaff/pes/ext.pyx -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,832 copying yaff/pes/grid.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,833 copying yaff/pes/grid.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,833 copying yaff/pes/grid.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,834 copying yaff/pes/iclist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,834 copying yaff/pes/iclist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,835 copying yaff/pes/iclist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,835 copying yaff/pes/nlist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,836 copying yaff/pes/nlist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,836 copying yaff/pes/nlist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,837 copying yaff/pes/pair_pot.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,838 copying yaff/pes/pair_pot.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,838 copying yaff/pes/pair_pot.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,839 copying yaff/pes/slater.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,839 copying yaff/pes/slater.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,840 copying yaff/pes/slater.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,840 copying yaff/pes/truncation.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,841 copying yaff/pes/truncation.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,841 copying yaff/pes/truncation.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,842 copying yaff/pes/vlist.c -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,842 copying yaff/pes/vlist.h -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,843 copying yaff/pes/vlist.pxd -> build/lib.linux-armv7l-cpython-313/yaff/pes 2025-09-08T09:28:47,847 running build_ext 2025-09-08T09:28:48,309 Compiling yaff/pes/ext.pyx because it changed. 2025-09-08T09:28:48,310 [1/1] Cythonizing yaff/pes/ext.pyx 2025-09-08T09:28:50,153 Error compiling Cython file: 2025-09-08T09:28:50,153 ------------------------------------------------------------ 2025-09-08T09:28:50,153 ... 2025-09-08T09:28:50,153 from __future__ import division 2025-09-08T09:28:50,153 import numpy as np 2025-09-08T09:28:50,153 cimport numpy as np 2025-09-08T09:28:50,154 cimport cell 2025-09-08T09:28:50,154 ^ 2025-09-08T09:28:50,154 ------------------------------------------------------------ 2025-09-08T09:28:50,154 yaff/pes/ext.pyx:37:8: 'cell.pxd' not found 2025-09-08T09:28:50,178 Error compiling Cython file: 2025-09-08T09:28:50,178 ------------------------------------------------------------ 2025-09-08T09:28:50,178 ... 2025-09-08T09:28:50,178 import numpy as np 2025-09-08T09:28:50,178 cimport numpy as np 2025-09-08T09:28:50,178 cimport cell 2025-09-08T09:28:50,179 cimport nlist 2025-09-08T09:28:50,179 ^ 2025-09-08T09:28:50,179 ------------------------------------------------------------ 2025-09-08T09:28:50,179 yaff/pes/ext.pyx:38:8: 'nlist.pxd' not found 2025-09-08T09:28:50,202 Error compiling Cython file: 2025-09-08T09:28:50,202 ------------------------------------------------------------ 2025-09-08T09:28:50,202 ... 2025-09-08T09:28:50,202 import numpy as np 2025-09-08T09:28:50,202 cimport numpy as np 2025-09-08T09:28:50,202 cimport cell 2025-09-08T09:28:50,202 cimport nlist 2025-09-08T09:28:50,202 cimport pair_pot 2025-09-08T09:28:50,202 ^ 2025-09-08T09:28:50,203 ------------------------------------------------------------ 2025-09-08T09:28:50,203 yaff/pes/ext.pyx:39:8: 'pair_pot.pxd' not found 2025-09-08T09:28:50,225 Error compiling Cython file: 2025-09-08T09:28:50,225 ------------------------------------------------------------ 2025-09-08T09:28:50,226 ... 2025-09-08T09:28:50,226 import numpy as np 2025-09-08T09:28:50,226 cimport numpy as np 2025-09-08T09:28:50,226 cimport cell 2025-09-08T09:28:50,226 cimport nlist 2025-09-08T09:28:50,226 cimport pair_pot 2025-09-08T09:28:50,226 cimport ewald 2025-09-08T09:28:50,226 ^ 2025-09-08T09:28:50,226 ------------------------------------------------------------ 2025-09-08T09:28:50,227 yaff/pes/ext.pyx:40:8: 'ewald.pxd' not found 2025-09-08T09:28:50,249 Error compiling Cython file: 2025-09-08T09:28:50,250 ------------------------------------------------------------ 2025-09-08T09:28:50,250 ... 2025-09-08T09:28:50,250 cimport numpy as np 2025-09-08T09:28:50,250 cimport cell 2025-09-08T09:28:50,250 cimport nlist 2025-09-08T09:28:50,250 cimport pair_pot 2025-09-08T09:28:50,250 cimport ewald 2025-09-08T09:28:50,250 cimport dlist 2025-09-08T09:28:50,250 ^ 2025-09-08T09:28:50,250 ------------------------------------------------------------ 2025-09-08T09:28:50,251 yaff/pes/ext.pyx:41:8: 'dlist.pxd' not found 2025-09-08T09:28:50,274 Error compiling Cython file: 2025-09-08T09:28:50,274 ------------------------------------------------------------ 2025-09-08T09:28:50,274 ... 2025-09-08T09:28:50,274 cimport cell 2025-09-08T09:28:50,274 cimport nlist 2025-09-08T09:28:50,274 cimport pair_pot 2025-09-08T09:28:50,274 cimport ewald 2025-09-08T09:28:50,274 cimport dlist 2025-09-08T09:28:50,274 cimport iclist 2025-09-08T09:28:50,274 ^ 2025-09-08T09:28:50,274 ------------------------------------------------------------ 2025-09-08T09:28:50,275 yaff/pes/ext.pyx:42:8: 'iclist.pxd' not found 2025-09-08T09:28:50,298 Error compiling Cython file: 2025-09-08T09:28:50,298 ------------------------------------------------------------ 2025-09-08T09:28:50,298 ... 2025-09-08T09:28:50,298 cimport nlist 2025-09-08T09:28:50,298 cimport pair_pot 2025-09-08T09:28:50,298 cimport ewald 2025-09-08T09:28:50,298 cimport dlist 2025-09-08T09:28:50,299 cimport iclist 2025-09-08T09:28:50,299 cimport vlist 2025-09-08T09:28:50,299 ^ 2025-09-08T09:28:50,299 ------------------------------------------------------------ 2025-09-08T09:28:50,299 yaff/pes/ext.pyx:43:8: 'vlist.pxd' not found 2025-09-08T09:28:50,322 Error compiling Cython file: 2025-09-08T09:28:50,322 ------------------------------------------------------------ 2025-09-08T09:28:50,322 ... 2025-09-08T09:28:50,322 cimport pair_pot 2025-09-08T09:28:50,322 cimport ewald 2025-09-08T09:28:50,322 cimport dlist 2025-09-08T09:28:50,322 cimport iclist 2025-09-08T09:28:50,322 cimport vlist 2025-09-08T09:28:50,322 cimport truncation 2025-09-08T09:28:50,322 ^ 2025-09-08T09:28:50,323 ------------------------------------------------------------ 2025-09-08T09:28:50,323 yaff/pes/ext.pyx:44:8: 'truncation.pxd' not found 2025-09-08T09:28:50,345 Error compiling Cython file: 2025-09-08T09:28:50,346 ------------------------------------------------------------ 2025-09-08T09:28:50,346 ... 2025-09-08T09:28:50,346 cimport ewald 2025-09-08T09:28:50,346 cimport dlist 2025-09-08T09:28:50,346 cimport iclist 2025-09-08T09:28:50,346 cimport vlist 2025-09-08T09:28:50,346 cimport truncation 2025-09-08T09:28:50,346 cimport grid 2025-09-08T09:28:50,346 ^ 2025-09-08T09:28:50,346 ------------------------------------------------------------ 2025-09-08T09:28:50,347 yaff/pes/ext.pyx:45:8: 'grid.pxd' not found 2025-09-08T09:28:50,347 Error compiling Cython file: 2025-09-08T09:28:50,347 ------------------------------------------------------------ 2025-09-08T09:28:50,347 ... 2025-09-08T09:28:50,347 '''Representation of periodic boundary conditions. 2025-09-08T09:28:50,347 0, 1, 2 and 3 dimensional systems are supported. The cell vectors need 2025-09-08T09:28:50,347 not to be orthogonal. 2025-09-08T09:28:50,348 ''' 2025-09-08T09:28:50,348 cdef cell.cell_type* _c_cell 2025-09-08T09:28:50,348 ^ 2025-09-08T09:28:50,348 ------------------------------------------------------------ 2025-09-08T09:28:50,348 yaff/pes/ext.pyx:78:9: 'cell_type' is not a type identifier 2025-09-08T09:28:50,351 Error compiling Cython file: 2025-09-08T09:28:50,351 ------------------------------------------------------------ 2025-09-08T09:28:50,351 ... 2025-09-08T09:28:50,351 # 2025-09-08T09:28:50,352 # Neighbor lists 2025-09-08T09:28:50,352 # 2025-09-08T09:28:50,352 cdef nlist.neigh_row_type _neigh_row_tmp 2025-09-08T09:28:50,352 ^ 2025-09-08T09:28:50,352 ------------------------------------------------------------ 2025-09-08T09:28:50,352 yaff/pes/ext.pyx:352:5: 'neigh_row_type' is not a type identifier 2025-09-08T09:28:50,353 Error compiling Cython file: 2025-09-08T09:28:50,353 ------------------------------------------------------------ 2025-09-08T09:28:50,353 ... 2025-09-08T09:28:50,353 def nlist_build(np.ndarray[double, ndim=2] pos, double rcut, 2025-09-08T09:28:50,353 np.ndarray[long, ndim=1] rmax, 2025-09-08T09:28:50,353 Cell unitcell, np.ndarray[long, ndim=1] status, 2025-09-08T09:28:50,353 np.ndarray[nlist.neigh_row_type, ndim=1] neighs): 2025-09-08T09:28:50,354 ^ 2025-09-08T09:28:50,354 ------------------------------------------------------------ 2025-09-08T09:28:50,354 yaff/pes/ext.pyx:378:33: Invalid type. 2025-09-08T09:28:50,364 Traceback (most recent call last): 2025-09-08T09:28:50,373 File "", line 2, in 2025-09-08T09:28:50,373 exec(compile(''' 2025-09-08T09:28:50,373 ~~~~^^^^^^^^^^^^ 2025-09-08T09:28:50,373 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:28:50,373 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:28:50,373 ...<32 lines>... 2025-09-08T09:28:50,373 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:28:50,374 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:28:50,374 ''' % ('/tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/setup.py',), "", "exec")) 2025-09-08T09:28:50,374 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:28:50,374 File "", line 35, in 2025-09-08T09:28:50,374 File "/tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/setup.py", line 76, in 2025-09-08T09:28:50,374 setup( 2025-09-08T09:28:50,374 ~~~~~^ 2025-09-08T09:28:50,374 name='yaff', 2025-09-08T09:28:50,375 ^^^^^^^^^^^^ 2025-09-08T09:28:50,375 ...<47 lines>... 2025-09-08T09:28:50,375 ], 2025-09-08T09:28:50,375 ^^ 2025-09-08T09:28:50,375 ) 2025-09-08T09:28:50,375 ^ 2025-09-08T09:28:50,375 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T09:28:50,375 return distutils.core.setup(**attrs) 2025-09-08T09:28:50,376 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:28:50,376 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T09:28:50,376 return run_commands(dist) 2025-09-08T09:28:50,376 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T09:28:50,376 dist.run_commands() 2025-09-08T09:28:50,376 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:28:50,376 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T09:28:50,376 self.run_command(cmd) 2025-09-08T09:28:50,376 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T09:28:50,377 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:28:50,377 super().run_command(command) 2025-09-08T09:28:50,377 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:28:50,377 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:28:50,377 cmd_obj.run() 2025-09-08T09:28:50,377 ~~~~~~~~~~~^^ 2025-09-08T09:28:50,377 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T09:28:50,377 self.run_command("build") 2025-09-08T09:28:50,378 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:28:50,378 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T09:28:50,378 self.distribution.run_command(command) 2025-09-08T09:28:50,378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:28:50,378 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:28:50,378 super().run_command(command) 2025-09-08T09:28:50,378 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:28:50,378 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:28:50,379 cmd_obj.run() 2025-09-08T09:28:50,379 ~~~~~~~~~~~^^ 2025-09-08T09:28:50,379 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T09:28:50,379 self.run_command(cmd_name) 2025-09-08T09:28:50,379 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T09:28:50,379 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T09:28:50,379 self.distribution.run_command(command) 2025-09-08T09:28:50,379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:28:50,379 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T09:28:50,380 super().run_command(command) 2025-09-08T09:28:50,380 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T09:28:50,380 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T09:28:50,380 cmd_obj.run() 2025-09-08T09:28:50,380 ~~~~~~~~~~~^^ 2025-09-08T09:28:50,380 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-08T09:28:50,380 self.build_extensions() 2025-09-08T09:28:50,380 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:28:50,381 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-08T09:28:50,381 self._build_extensions_serial() 2025-09-08T09:28:50,381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T09:28:50,381 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-08T09:28:50,381 self.build_extension(ext) 2025-09-08T09:28:50,381 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T09:28:50,381 File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension 2025-09-08T09:28:50,381 new_ext = cythonize( 2025-09-08T09:28:50,381 ~~~~~~~~~^ 2025-09-08T09:28:50,382 ext,force=self.force, quiet=self.verbose == 0, **options 2025-09-08T09:28:50,382 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T09:28:50,382 )[0] 2025-09-08T09:28:50,382 ^ 2025-09-08T09:28:50,382 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T09:28:50,382 cythonize_one(*args) 2025-09-08T09:28:50,382 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T09:28:50,382 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T09:28:50,383 raise CompileError(None, pyx_file) 2025-09-08T09:28:50,383 Cython.Compiler.Errors.CompileError: yaff/pes/ext.pyx 2025-09-08T09:28:50,750 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T09:28:50,761 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T09:28:50,761 exec(compile('"'"''"'"''"'"' 2025-09-08T09:28:50,761 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:28:50,761 # 2025-09-08T09:28:50,761 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T09:28:50,761 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T09:28:50,761 # - It provides a clear error message when setuptools is not installed. 2025-09-08T09:28:50,761 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T09:28:50,761 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T09:28:50,761 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T09:28:50,761 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T09:28:50,761 import os, sys, tokenize, traceback 2025-09-08T09:28:50,761 2025-09-08T09:28:50,761 try: 2025-09-08T09:28:50,761 import setuptools 2025-09-08T09:28:50,761 except ImportError: 2025-09-08T09:28:50,761 print( 2025-09-08T09:28:50,761 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T09:28:50,761 "the build environment with exception:", 2025-09-08T09:28:50,761 file=sys.stderr, 2025-09-08T09:28:50,761 ) 2025-09-08T09:28:50,761 traceback.print_exc() 2025-09-08T09:28:50,761 sys.exit(1) 2025-09-08T09:28:50,761 2025-09-08T09:28:50,761 __file__ = %r 2025-09-08T09:28:50,761 sys.argv[0] = __file__ 2025-09-08T09:28:50,761 2025-09-08T09:28:50,761 if os.path.exists(__file__): 2025-09-08T09:28:50,761 filename = __file__ 2025-09-08T09:28:50,761 with tokenize.open(__file__) as f: 2025-09-08T09:28:50,761 setup_py_code = f.read() 2025-09-08T09:28:50,761 else: 2025-09-08T09:28:50,761 filename = "" 2025-09-08T09:28:50,761 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T09:28:50,761 2025-09-08T09:28:50,761 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:28:50,761 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-cr_txl5w[/] 2025-09-08T09:28:50,761 [bold magenta]cwd[/]: /tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/ 2025-09-08T09:28:50,762 Building wheel for yaff (setup.py): finished with status 'error' 2025-09-08T09:28:50,762 ERROR: Failed building wheel for yaff 2025-09-08T09:28:50,763 Running setup.py clean for yaff 2025-09-08T09:28:50,764 Running command python setup.py clean 2025-09-08T09:28:51,675 Trying to get the version from git describe 2025-09-08T09:28:51,680 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T09:28:51,681 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T09:28:51,681 Trying to get the version from {} /tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/yaff/version.py 2025-09-08T09:28:51,682 Version according to /tmp/pip-wheel-hs67pnv8/yaff_5248f8f94b634be1aa5cd321172b9e3e/yaff/version.py: 1.4.2 2025-09-08T09:28:51,801 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T09:28:51,801 !! 2025-09-08T09:28:51,801 ******************************************************************************** 2025-09-08T09:28:51,801 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T09:28:51,801 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T09:28:51,802 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T09:28:51,802 or your builds will no longer be supported. 2025-09-08T09:28:51,802 ******************************************************************************** 2025-09-08T09:28:51,802 !! 2025-09-08T09:28:51,802 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T09:28:52,186 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:28:52,186 !! 2025-09-08T09:28:52,186 ******************************************************************************** 2025-09-08T09:28:52,186 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:28:52,187 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-09-08T09:28:52,187 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:28:52,187 ******************************************************************************** 2025-09-08T09:28:52,187 !! 2025-09-08T09:28:52,187 self._finalize_license_expression() 2025-09-08T09:28:52,264 running clean 2025-09-08T09:28:52,419 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T09:28:52,427 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T09:28:52,427 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T09:28:52,427 removing 'build' 2025-09-08T09:28:52,567 Failed to build yaff 2025-09-08T09:28:52,568 ERROR: Failed to build one or more wheels 2025-09-08T09:28:52,569 Exception information: 2025-09-08T09:28:52,569 Traceback (most recent call last): 2025-09-08T09:28:52,569 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T09:28:52,569 status = _inner_run() 2025-09-08T09:28:52,569 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T09:28:52,569 return self.run(options, args) 2025-09-08T09:28:52,569 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T09:28:52,569 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T09:28:52,569 return func(self, options, args) 2025-09-08T09:28:52,569 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T09:28:52,569 raise CommandError("Failed to build one or more wheels") 2025-09-08T09:28:52,569 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T09:28:52,573 Removed build tracker: '/tmp/pip-build-tracker-0j5zakji'