2025-09-08T09:34:25,488 Created temporary directory: /tmp/pip-build-tracker-j7p2d_cq 2025-09-08T09:34:25,488 Initialized build tracking at /tmp/pip-build-tracker-j7p2d_cq 2025-09-08T09:34:25,488 Created build tracker: /tmp/pip-build-tracker-j7p2d_cq 2025-09-08T09:34:25,488 Entered build tracker: /tmp/pip-build-tracker-j7p2d_cq 2025-09-08T09:34:25,489 Created temporary directory: /tmp/pip-wheel-58ad253s 2025-09-08T09:34:25,492 Created temporary directory: /tmp/pip-ephem-wheel-cache-n6bujtp1 2025-09-08T09:34:25,550 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T09:34:25,553 2 location(s) to search for versions of hapflk: 2025-09-08T09:34:25,553 * https://pypi.org/simple/hapflk/ 2025-09-08T09:34:25,553 * https://www.piwheels.org/simple/hapflk/ 2025-09-08T09:34:25,553 Fetching project page and analyzing links: https://pypi.org/simple/hapflk/ 2025-09-08T09:34:25,553 Getting page https://pypi.org/simple/hapflk/ 2025-09-08T09:34:25,554 Found index url https://pypi.org/simple/ 2025-09-08T09:34:25,625 Fetched page https://pypi.org/simple/hapflk/ as application/vnd.pypi.simple.v1+json 2025-09-08T09:34:25,627 Found link https://files.pythonhosted.org/packages/b2/ad/85999140cbc66853d701f214fd6548aab07dc46fe29c2d8632c332e97689/hapflk-1.3.2.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.2 2025-09-08T09:34:25,628 Found link https://files.pythonhosted.org/packages/ca/fa/51a8f51e01fbc13e8f4b36acbdb6d31188481f4c1ce440b8797ec769d910/hapflk-1.3.3.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.3 2025-09-08T09:34:25,628 Found link https://files.pythonhosted.org/packages/63/d9/33d91f8a3376ab13ffc0a102caa32a2332fccda2db96009f7cf317593e1b/hapflk-1.3.4.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.4 2025-09-08T09:34:25,628 Found link https://files.pythonhosted.org/packages/65/21/a92bba282c49dcacbdb002ed60a7a9b2bddfb98f7eedc382a3d0c134abe7/hapflk-1.3.5.dev0.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev0 2025-09-08T09:34:25,628 Found link https://files.pythonhosted.org/packages/6b/81/cc8f04f774e8728b5167bc58ae12eb4fb2125b784a395fdfefb3e78f7733/hapflk-1.3.5.dev1.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev1 2025-09-08T09:34:25,628 Found link https://files.pythonhosted.org/packages/f8/34/1bd9c49ea13e6be4afec643acfe9f960ae6714fea4d5499a75988e81663e/hapflk-1.3.5.dev2.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev2 2025-09-08T09:34:25,629 Found link https://files.pythonhosted.org/packages/96/14/256f0eda9b570de3b48a7fcff1d062ab7694bd32e7f2ad7ef8bd483b926f/hapflk-1.3.5.dev3.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev3 2025-09-08T09:34:25,629 Found link https://files.pythonhosted.org/packages/aa/c6/c72917e6d4492061b47104c7922b0368c38be20b87bf3e0553d8824a9cfe/hapflk-1.3.5.dev4.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev4 2025-09-08T09:34:25,629 Found link https://files.pythonhosted.org/packages/a4/96/4b534230ad9ea961235c5841bde1054bacbb574f88fe19324a776d4b0992/hapflk-1.3.5.dev5.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev5 2025-09-08T09:34:25,629 Found link https://files.pythonhosted.org/packages/5c/f9/f5bd0ea0712da4d11795fda5b40c44be0421a85d6b05f8e9687ce30b8089/hapflk-1.3.5.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5 2025-09-08T09:34:25,629 Found link https://files.pythonhosted.org/packages/51/c4/ed7b823aa136185d750d60f53268cfb6804dcc87183dbe216135e63aa583/hapflk-1.4.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.4 2025-09-08T09:34:25,630 Found link https://files.pythonhosted.org/packages/c6/a6/ed1b0c03bdb79de6f288c5e982af3afcaae7a26cdd00ff75dd98bf81a13e/hapflk-2.0.dev0.tar.gz (from https://pypi.org/simple/hapflk/), version: 2.0.dev0 2025-09-08T09:34:25,630 Found link https://files.pythonhosted.org/packages/30/60/1dab8e6a54e7ef2c19a62114527d5512da17a09a590d5551610b2fce8195/hapflk-2.0.dev1.tar.gz (from https://pypi.org/simple/hapflk/), version: 2.0.dev1 2025-09-08T09:34:25,630 Found link https://files.pythonhosted.org/packages/89/5d/fa3af0a5d868d5154d1516696a317c13bcb686706143ec2052f789e17017/hapflk-2.0.dev2.tar.gz (from https://pypi.org/simple/hapflk/), version: 2.0.dev2 2025-09-08T09:34:25,630 Skipping link: No binaries permitted for hapflk: https://files.pythonhosted.org/packages/17/3e/be1a90cc099e9ab4e2031be8539dad16495f9fc61f72424cee5dd0260f08/hapflk-2.1-py3-none-any.whl (from https://pypi.org/simple/hapflk/) (requires-python:>=3.8) 2025-09-08T09:34:25,631 Found link https://files.pythonhosted.org/packages/6c/ea/807cf8f36f1af15848db5264d8af4a260c081525943a932d69a81543ca8e/hapflk-2.1.tar.gz (from https://pypi.org/simple/hapflk/) (requires-python:>=3.8), version: 2.1 2025-09-08T09:34:25,631 Fetching project page and analyzing links: https://www.piwheels.org/simple/hapflk/ 2025-09-08T09:34:25,631 Getting page https://www.piwheels.org/simple/hapflk/ 2025-09-08T09:34:25,632 Found index url https://www.piwheels.org/simple/ 2025-09-08T09:34:25,719 Fetched page https://www.piwheels.org/simple/hapflk/ as text/html 2025-09-08T09:34:25,727 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-2.1-py3-none-any.whl#sha256=12ca832837ecb12292516fbb6ab0aff875d2be9a41f09362808a6973e3b3114e (from https://www.piwheels.org/simple/hapflk/) (requires-python:>=3.8) 2025-09-08T09:34:25,727 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.4-cp35-cp35m-linux_armv6l.whl#sha256=f7038eca9bba9d085b3b2ba6c6cba6778b3767a641d8c77b4a6770167d4d322d (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,727 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.4-cp35-cp35m-linux_armv7l.whl#sha256=f7038eca9bba9d085b3b2ba6c6cba6778b3767a641d8c77b4a6770167d4d322d (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,727 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.4-cp34-cp34m-linux_armv7l.whl#sha256=fb3798d9a4c7b3e2fb4b977a8d6dc3ae44b4cb0102ca67167d58182da2bdce0b (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,727 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5-cp35-cp35m-linux_armv6l.whl#sha256=73ecd00dcf029388178f31b3cbf3c04cbb264f752a6d05214bd6df8db316df6f (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,727 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5-cp35-cp35m-linux_armv7l.whl#sha256=73ecd00dcf029388178f31b3cbf3c04cbb264f752a6d05214bd6df8db316df6f (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,727 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5-cp34-cp34m-linux_armv7l.whl#sha256=5a64b9b9dae78e36eca456a2e9709b21d7a7bdb908a3d47e2b6529e1a5a64d1b (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,728 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev5-cp34-cp34m-linux_armv7l.whl#sha256=fc973aad2b2ab1f031c8f17bd84b9707d283a7ce888fd944c7af2b0a925a4deb (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,728 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev5-cp35-cp35m-linux_armv7l.whl#sha256=2801d5ffbdc9b9fcbf8e6cce77a1514b01ca28f562e550bfd093296db4ef9a95 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,728 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev5-cp35-cp35m-linux_armv6l.whl#sha256=2801d5ffbdc9b9fcbf8e6cce77a1514b01ca28f562e550bfd093296db4ef9a95 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,728 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev4-cp35-cp35m-linux_armv6l.whl#sha256=36fb4c6462ef30dda62684182251105eb2c822311065fd8ecd3b8a50f71ff244 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,728 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev4-cp35-cp35m-linux_armv7l.whl#sha256=36fb4c6462ef30dda62684182251105eb2c822311065fd8ecd3b8a50f71ff244 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,728 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev4-cp34-cp34m-linux_armv7l.whl#sha256=ba9a150f4c149df5b850e3dd31a6b7c442c50be76885355dc4a61611769ea367 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,728 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev3-cp34-cp34m-linux_armv7l.whl#sha256=12a3afe8bcb1936f5e30f374a25c6c3ad3f95ae5f59debcd89d3411d54899c86 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,729 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev3-cp35-cp35m-linux_armv7l.whl#sha256=e102a09db17e00ce4674077242b8abe77b140ccbc28084bc872a84f6a1f5dab0 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,729 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev3-cp35-cp35m-linux_armv6l.whl#sha256=e102a09db17e00ce4674077242b8abe77b140ccbc28084bc872a84f6a1f5dab0 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,729 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev2-cp34-cp34m-linux_armv7l.whl#sha256=12bd84214f6f58f4c6f555ae0634e7113ce57a3acdd1f6d868c9e7af24fa02b9 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,729 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev2-cp35-cp35m-linux_armv7l.whl#sha256=85ee36207b1cd90230358cc0a26778bda8e49013f9d5f7c8ceb5cea13e0dc6c1 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,729 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev2-cp35-cp35m-linux_armv6l.whl#sha256=85ee36207b1cd90230358cc0a26778bda8e49013f9d5f7c8ceb5cea13e0dc6c1 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,729 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev1-cp34-cp34m-linux_armv7l.whl#sha256=bab3585f6d546ed89812d88ba4d53169fec7ed73ea4998b71ff15b044cac28fb (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,729 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev1-cp35-cp35m-linux_armv6l.whl#sha256=35e24788097f96d5805a7deb3fb82097bd48e535242bc017451a29d7b7330b64 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,729 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev1-cp35-cp35m-linux_armv7l.whl#sha256=35e24788097f96d5805a7deb3fb82097bd48e535242bc017451a29d7b7330b64 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,730 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev0-cp34-cp34m-linux_armv7l.whl#sha256=7bc675908db24bc875711def8f5103a4072f0708f3aa25e4947ca14666b6175b (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,730 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev0-cp35-cp35m-linux_armv6l.whl#sha256=b3c6463a3333cb6d9246c27e81417b47bf70e14044a9c20fe9f11bed9b674215 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,730 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev0-cp35-cp35m-linux_armv7l.whl#sha256=b3c6463a3333cb6d9246c27e81417b47bf70e14044a9c20fe9f11bed9b674215 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,730 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.4-cp35-cp35m-linux_armv7l.whl#sha256=800b7833e4834c2b1376c8720f91d0a268d68f015607f79809e1ee7029ef2037 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,730 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.4-cp35-cp35m-linux_armv6l.whl#sha256=800b7833e4834c2b1376c8720f91d0a268d68f015607f79809e1ee7029ef2037 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,730 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.4-cp34-cp34m-linux_armv7l.whl#sha256=90f903ac669e6630c734222d9d32160aba9bcc7bccfa461f13f96d6003c1c935 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,730 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.3-cp35-cp35m-linux_armv7l.whl#sha256=b75ac5587497663f5dc6408cb449fac164d073dc6484492b692955d58e16cf6f (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,730 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.3-cp35-cp35m-linux_armv6l.whl#sha256=b75ac5587497663f5dc6408cb449fac164d073dc6484492b692955d58e16cf6f (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,731 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.3-cp34-cp34m-linux_armv7l.whl#sha256=4f02cb00f9b7473476979a98ce9531d641cf13cc2bc2b300a8d9c3d64d8deceb (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:34:25,731 Skipping link: not a file: https://www.piwheels.org/simple/hapflk/ 2025-09-08T09:34:25,731 Skipping link: not a file: https://pypi.org/simple/hapflk/ 2025-09-08T09:34:25,755 Given no hashes to check 1 links for project 'hapflk': discarding no candidates 2025-09-08T09:34:25,756 Collecting hapflk==1.3.5.dev0 2025-09-08T09:34:25,757 Created temporary directory: /tmp/pip-unpack-3sss6lrb 2025-09-08T09:34:25,899 Downloading hapflk-1.3.5.dev0.tar.gz (276 kB) 2025-09-08T09:34:25,998 Added hapflk==1.3.5.dev0 from https://files.pythonhosted.org/packages/65/21/a92bba282c49dcacbdb002ed60a7a9b2bddfb98f7eedc382a3d0c134abe7/hapflk-1.3.5.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-j7p2d_cq' 2025-09-08T09:34:26,000 Running setup.py (path:/tmp/pip-wheel-58ad253s/hapflk_8ff1c7b693314fa8895cee95974bc8ec/setup.py) egg_info for package hapflk 2025-09-08T09:34:26,000 Created temporary directory: /tmp/pip-pip-egg-info-1nlqtbgf 2025-09-08T09:34:26,000 Preparing metadata (setup.py): started 2025-09-08T09:34:26,001 Running command python setup.py egg_info 2025-09-08T09:34:27,292 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.3.5-dev' to '1.3.5.dev0' 2025-09-08T09:34:27,292 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T09:34:27,294 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:34:27,294 !! 2025-09-08T09:34:27,295 ******************************************************************************** 2025-09-08T09:34:27,295 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:34:27,295 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T09:34:27,295 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:34:27,295 ******************************************************************************** 2025-09-08T09:34:27,295 !! 2025-09-08T09:34:27,295 self._finalize_license_expression() 2025-09-08T09:34:27,369 running egg_info 2025-09-08T09:34:27,446 creating /tmp/pip-pip-egg-info-1nlqtbgf/hapflk.egg-info 2025-09-08T09:34:27,446 writing /tmp/pip-pip-egg-info-1nlqtbgf/hapflk.egg-info/PKG-INFO 2025-09-08T09:34:27,447 writing dependency_links to /tmp/pip-pip-egg-info-1nlqtbgf/hapflk.egg-info/dependency_links.txt 2025-09-08T09:34:27,448 writing top-level names to /tmp/pip-pip-egg-info-1nlqtbgf/hapflk.egg-info/top_level.txt 2025-09-08T09:34:27,449 writing manifest file '/tmp/pip-pip-egg-info-1nlqtbgf/hapflk.egg-info/SOURCES.txt' 2025-09-08T09:34:27,825 reading manifest file '/tmp/pip-pip-egg-info-1nlqtbgf/hapflk.egg-info/SOURCES.txt' 2025-09-08T09:34:27,826 reading manifest template 'MANIFEST.in' 2025-09-08T09:34:27,827 adding license file 'LICENSE.txt' 2025-09-08T09:34:27,828 adding license file 'COPYING.txt' 2025-09-08T09:34:27,830 writing manifest file '/tmp/pip-pip-egg-info-1nlqtbgf/hapflk.egg-info/SOURCES.txt' 2025-09-08T09:34:27,966 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T09:34:27,971 Source in /tmp/pip-wheel-58ad253s/hapflk_8ff1c7b693314fa8895cee95974bc8ec has version 1.3.5.dev0, which satisfies requirement hapflk==1.3.5.dev0 from https://files.pythonhosted.org/packages/65/21/a92bba282c49dcacbdb002ed60a7a9b2bddfb98f7eedc382a3d0c134abe7/hapflk-1.3.5.dev0.tar.gz 2025-09-08T09:34:27,971 Removed hapflk==1.3.5.dev0 from https://files.pythonhosted.org/packages/65/21/a92bba282c49dcacbdb002ed60a7a9b2bddfb98f7eedc382a3d0c134abe7/hapflk-1.3.5.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-j7p2d_cq' 2025-09-08T09:34:27,975 Created temporary directory: /tmp/pip-unpack-t9y5aib7 2025-09-08T09:34:27,975 Created temporary directory: /tmp/pip-unpack-s5kph5nh 2025-09-08T09:34:27,975 Building wheels for collected packages: hapflk 2025-09-08T09:34:27,976 Created temporary directory: /tmp/pip-wheel-axt4t_ck 2025-09-08T09:34:27,977 DEPRECATION: Building 'hapflk' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hapflk'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T09:34:27,978 Building wheel for hapflk (setup.py): started 2025-09-08T09:34:27,978 Destination directory: /tmp/pip-wheel-axt4t_ck 2025-09-08T09:34:27,978 Running command python setup.py bdist_wheel 2025-09-08T09:34:29,252 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.3.5-dev' to '1.3.5.dev0' 2025-09-08T09:34:29,253 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T09:34:29,255 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:34:29,255 !! 2025-09-08T09:34:29,255 ******************************************************************************** 2025-09-08T09:34:29,255 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:34:29,255 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T09:34:29,255 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:34:29,256 ******************************************************************************** 2025-09-08T09:34:29,256 !! 2025-09-08T09:34:29,256 self._finalize_license_expression() 2025-09-08T09:34:29,256 running bdist_wheel 2025-09-08T09:34:29,630 running build 2025-09-08T09:34:29,631 running build_py 2025-09-08T09:34:29,708 creating build/lib.linux-armv7l-cpython-313/fastphase 2025-09-08T09:34:29,709 copying fastphase/__init__.py -> build/lib.linux-armv7l-cpython-313/fastphase 2025-09-08T09:34:29,710 creating build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:34:29,710 copying hapflk/popgen.py -> build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:34:29,710 copying hapflk/InputOutput.py -> build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:34:29,711 copying hapflk/nj.py -> build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:34:29,712 copying hapflk/data.py -> build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:34:29,712 copying hapflk/__init__.py -> build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:34:29,714 running build_ext 2025-09-08T09:34:30,044 building 'fastphase.fastphaseCython' extension 2025-09-08T09:34:30,045 creating build/temp.linux-armv7l-cpython-313/fastphase 2025-09-08T09:34:30,045 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c fastphase/fastphaseCython.c -o build/temp.linux-armv7l-cpython-313/fastphase/fastphaseCython.o 2025-09-08T09:34:30,455 fastphase/fastphaseCython.c: In function ‘__Pyx_ListComp_Append’: 2025-09-08T09:34:30,455 fastphase/fastphaseCython.c:916:23: error: lvalue required as left operand of assignment 2025-09-08T09:34:30,455 916 | Py_SIZE(list) = len+1; 2025-09-08T09:34:30,455 | ^ 2025-09-08T09:34:30,456 fastphase/fastphaseCython.c: In function ‘__Pyx_PyList_Append’: 2025-09-08T09:34:30,456 fastphase/fastphaseCython.c:975:23: error: lvalue required as left operand of assignment 2025-09-08T09:34:30,456 975 | Py_SIZE(list) = len+1; 2025-09-08T09:34:30,456 | ^ 2025-09-08T09:34:30,553 fastphase/fastphaseCython.c: In function ‘__pyx_pf_15fastphaseCython_9fastphase___init__’: 2025-09-08T09:34:30,557 fastphase/fastphaseCython.c:4188:3: warning: ‘Py_OptimizeFlag’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:30,557 4188 | if (unlikely(!Py_OptimizeFlag)) { 2025-09-08T09:34:30,557 | ^~ 2025-09-08T09:34:30,558 In file included from /usr/include/python3.13/Python.h:76, 2025-09-08T09:34:30,558 from fastphase/fastphaseCython.c:4: 2025-09-08T09:34:30,558 /usr/include/python3.13/cpython/pydebug.h:13:37: note: declared here 2025-09-08T09:34:30,558 13 | Py_DEPRECATED(3.12) PyAPI_DATA(int) Py_OptimizeFlag; 2025-09-08T09:34:30,558 | ^~~~~~~~~~~~~~~ 2025-09-08T09:34:30,563 fastphase/fastphaseCython.c: In function ‘__pyx_pf_15fastphaseCython_9fastphase_4addHaplotype’: 2025-09-08T09:34:30,568 fastphase/fastphaseCython.c:4463:7: warning: ‘Py_OptimizeFlag’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:30,568 4463 | if (unlikely(!Py_OptimizeFlag)) { 2025-09-08T09:34:30,568 | ^~ 2025-09-08T09:34:30,568 /usr/include/python3.13/cpython/pydebug.h:13:37: note: declared here 2025-09-08T09:34:30,568 13 | Py_DEPRECATED(3.12) PyAPI_DATA(int) Py_OptimizeFlag; 2025-09-08T09:34:30,568 | ^~~~~~~~~~~~~~~ 2025-09-08T09:34:30,575 fastphase/fastphaseCython.c: In function ‘__pyx_pf_15fastphaseCython_9fastphase_6addGenotype’: 2025-09-08T09:34:30,580 fastphase/fastphaseCython.c:4749:7: warning: ‘Py_OptimizeFlag’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:30,580 4749 | if (unlikely(!Py_OptimizeFlag)) { 2025-09-08T09:34:30,580 | ^~ 2025-09-08T09:34:30,580 /usr/include/python3.13/cpython/pydebug.h:13:37: note: declared here 2025-09-08T09:34:30,580 13 | Py_DEPRECATED(3.12) PyAPI_DATA(int) Py_OptimizeFlag; 2025-09-08T09:34:30,581 | ^~~~~~~~~~~~~~~ 2025-09-08T09:34:31,816 fastphase/fastphaseCython.c: In function ‘__pyx_pf_5numpy_7ndarray___getbuffer__’: 2025-09-08T09:34:31,840 fastphase/fastphaseCython.c:13311:50: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_C_CONTIGUOUS’? 2025-09-08T09:34:31,840 13311 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_C_CONTIGUOUS) != 0)) != 0); 2025-09-08T09:34:31,840 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:31,840 | PyBUF_C_CONTIGUOUS 2025-09-08T09:34:31,841 fastphase/fastphaseCython.c:13311:50: note: each undeclared identifier is reported only once for each function it appears in 2025-09-08T09:34:31,884 fastphase/fastphaseCython.c:13367:50: error: ‘NPY_F_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_F_CONTIGUOUS’? 2025-09-08T09:34:31,885 13367 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0); 2025-09-08T09:34:31,885 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:31,885 | PyBUF_F_CONTIGUOUS 2025-09-08T09:34:31,892 fastphase/fastphaseCython.c: In function ‘__pyx_f_5numpy__util_dtypestring’: 2025-09-08T09:34:31,908 fastphase/fastphaseCython.c:14433:29: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T09:34:31,908 14433 | if (unlikely(__pyx_v_descr->names == Py_None)) { 2025-09-08T09:34:31,908 | ^~ 2025-09-08T09:34:31,908 fastphase/fastphaseCython.c:434:43: note: in definition of macro ‘unlikely’ 2025-09-08T09:34:31,908 434 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T09:34:31,908 | ^ 2025-09-08T09:34:31,926 fastphase/fastphaseCython.c:14437:28: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T09:34:31,926 14437 | __pyx_t_1 = __pyx_v_descr->names; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0; 2025-09-08T09:34:31,927 | ^~ 2025-09-08T09:34:31,947 fastphase/fastphaseCython.c:14456:31: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T09:34:31,947 14456 | if (unlikely(__pyx_v_descr->fields == Py_None)) { 2025-09-08T09:34:31,947 | ^~ 2025-09-08T09:34:31,947 fastphase/fastphaseCython.c:434:43: note: in definition of macro ‘unlikely’ 2025-09-08T09:34:31,947 434 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T09:34:31,947 | ^ 2025-09-08T09:34:31,965 fastphase/fastphaseCython.c:14460:51: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T09:34:31,966 14460 | __pyx_t_3 = __Pyx_PyDict_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 795; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; 2025-09-08T09:34:31,966 | ^~ 2025-09-08T09:34:31,996 fastphase/fastphaseCython.c:14665:79: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘elsize’ 2025-09-08T09:34:31,996 14665 | (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + __pyx_v_child->elsize); 2025-09-08T09:34:31,996 | ^~ 2025-09-08T09:34:32,013 fastphase/fastphaseCython.c: In function ‘__Pyx_InitCachedConstants’: 2025-09-08T09:34:32,031 fastphase/fastphaseCython.c:15588:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,031 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,031 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,031 In file included from /usr/include/python3.13/Python.h:101: 2025-09-08T09:34:32,031 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,031 213 | PyCode_New( 2025-09-08T09:34:32,031 | ^~~~~~~~~~ 2025-09-08T09:34:32,051 fastphase/fastphaseCython.c:15588:238: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,051 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,051 | ^~ 2025-09-08T09:34:32,051 | | 2025-09-08T09:34:32,051 | int 2025-09-08T09:34:32,051 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,051 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,051 | ^~~~~ 2025-09-08T09:34:32,052 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,052 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,052 | ~~~~~~~~~~^ 2025-09-08T09:34:32,070 fastphase/fastphaseCython.c:15588:242: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,070 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,071 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,071 | | 2025-09-08T09:34:32,071 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,071 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,071 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,071 | ^~~~ 2025-09-08T09:34:32,071 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,071 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,071 | ~~~~^ 2025-09-08T09:34:32,090 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,090 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,090 | ^~~~~~~~~~ 2025-09-08T09:34:32,090 fastphase/fastphaseCython.c:15588:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,090 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,090 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,090 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,091 213 | PyCode_New( 2025-09-08T09:34:32,091 | ^~~~~~~~~~ 2025-09-08T09:34:32,108 fastphase/fastphaseCython.c:15600:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,108 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,108 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,108 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,108 213 | PyCode_New( 2025-09-08T09:34:32,108 | ^~~~~~~~~~ 2025-09-08T09:34:32,127 fastphase/fastphaseCython.c:15600:244: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,127 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,128 | ^~ 2025-09-08T09:34:32,128 | | 2025-09-08T09:34:32,128 | int 2025-09-08T09:34:32,128 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,128 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,128 | ^~~~~ 2025-09-08T09:34:32,128 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,128 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,128 | ~~~~~~~~~~^ 2025-09-08T09:34:32,147 fastphase/fastphaseCython.c:15600:248: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,147 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,147 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,147 | | 2025-09-08T09:34:32,147 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,147 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,148 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,148 | ^~~~ 2025-09-08T09:34:32,148 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,148 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,148 | ~~~~^ 2025-09-08T09:34:32,166 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,167 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,167 | ^~~~~~~~~~ 2025-09-08T09:34:32,167 fastphase/fastphaseCython.c:15600:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,167 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,167 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,167 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,167 213 | PyCode_New( 2025-09-08T09:34:32,167 | ^~~~~~~~~~ 2025-09-08T09:34:32,184 fastphase/fastphaseCython.c:15612:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,185 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,185 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,185 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,185 213 | PyCode_New( 2025-09-08T09:34:32,185 | ^~~~~~~~~~ 2025-09-08T09:34:32,204 fastphase/fastphaseCython.c:15612:245: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,204 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,204 | ^~ 2025-09-08T09:34:32,204 | | 2025-09-08T09:34:32,205 | int 2025-09-08T09:34:32,205 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,205 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,205 | ^~~~~ 2025-09-08T09:34:32,205 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,205 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,205 | ~~~~~~~~~~^ 2025-09-08T09:34:32,224 fastphase/fastphaseCython.c:15612:249: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,224 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,224 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,224 | | 2025-09-08T09:34:32,224 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,224 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,224 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,224 | ^~~~ 2025-09-08T09:34:32,225 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,225 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,225 | ~~~~^ 2025-09-08T09:34:32,243 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,243 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,244 | ^~~~~~~~~~ 2025-09-08T09:34:32,244 fastphase/fastphaseCython.c:15612:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,244 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,244 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,244 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,244 213 | PyCode_New( 2025-09-08T09:34:32,244 | ^~~~~~~~~~ 2025-09-08T09:34:32,261 fastphase/fastphaseCython.c:15624:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,261 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,261 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,262 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,262 213 | PyCode_New( 2025-09-08T09:34:32,262 | ^~~~~~~~~~ 2025-09-08T09:34:32,281 fastphase/fastphaseCython.c:15624:240: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,281 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,281 | ^~ 2025-09-08T09:34:32,281 | | 2025-09-08T09:34:32,281 | int 2025-09-08T09:34:32,281 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,281 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,282 | ^~~~~ 2025-09-08T09:34:32,282 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,282 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,282 | ~~~~~~~~~~^ 2025-09-08T09:34:32,300 fastphase/fastphaseCython.c:15624:244: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,301 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,301 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,301 | | 2025-09-08T09:34:32,301 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,301 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,301 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,301 | ^~~~ 2025-09-08T09:34:32,301 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,301 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,302 | ~~~~^ 2025-09-08T09:34:32,320 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,320 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,320 | ^~~~~~~~~~ 2025-09-08T09:34:32,321 fastphase/fastphaseCython.c:15624:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,321 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,321 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,321 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,321 213 | PyCode_New( 2025-09-08T09:34:32,321 | ^~~~~~~~~~ 2025-09-08T09:34:32,338 fastphase/fastphaseCython.c:15636:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,338 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,338 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,338 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,339 213 | PyCode_New( 2025-09-08T09:34:32,339 | ^~~~~~~~~~ 2025-09-08T09:34:32,358 fastphase/fastphaseCython.c:15636:239: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,358 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,358 | ^~ 2025-09-08T09:34:32,358 | | 2025-09-08T09:34:32,358 | int 2025-09-08T09:34:32,358 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,358 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,358 | ^~~~~ 2025-09-08T09:34:32,359 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,359 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,359 | ~~~~~~~~~~^ 2025-09-08T09:34:32,377 fastphase/fastphaseCython.c:15636:243: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,378 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,378 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,378 | | 2025-09-08T09:34:32,378 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,378 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,378 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,378 | ^~~~ 2025-09-08T09:34:32,378 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,378 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,378 | ~~~~^ 2025-09-08T09:34:32,397 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,397 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,397 | ^~~~~~~~~~ 2025-09-08T09:34:32,397 fastphase/fastphaseCython.c:15636:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,397 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,398 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,398 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,398 213 | PyCode_New( 2025-09-08T09:34:32,398 | ^~~~~~~~~~ 2025-09-08T09:34:32,415 fastphase/fastphaseCython.c:15648:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,415 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,415 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,415 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,415 213 | PyCode_New( 2025-09-08T09:34:32,416 | ^~~~~~~~~~ 2025-09-08T09:34:32,435 fastphase/fastphaseCython.c:15648:238: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,435 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,435 | ^~ 2025-09-08T09:34:32,435 | | 2025-09-08T09:34:32,435 | int 2025-09-08T09:34:32,435 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,435 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,435 | ^~~~~ 2025-09-08T09:34:32,436 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,436 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,436 | ~~~~~~~~~~^ 2025-09-08T09:34:32,454 fastphase/fastphaseCython.c:15648:242: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,455 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,455 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,455 | | 2025-09-08T09:34:32,455 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,455 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,455 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,455 | ^~~~ 2025-09-08T09:34:32,455 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,455 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,455 | ~~~~^ 2025-09-08T09:34:32,474 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,474 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,474 | ^~~~~~~~~~ 2025-09-08T09:34:32,474 fastphase/fastphaseCython.c:15648:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,475 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,475 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,475 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,475 213 | PyCode_New( 2025-09-08T09:34:32,475 | ^~~~~~~~~~ 2025-09-08T09:34:32,492 fastphase/fastphaseCython.c:15660:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,492 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,492 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,492 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,492 213 | PyCode_New( 2025-09-08T09:34:32,493 | ^~~~~~~~~~ 2025-09-08T09:34:32,512 fastphase/fastphaseCython.c:15660:239: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,512 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,512 | ^~ 2025-09-08T09:34:32,512 | | 2025-09-08T09:34:32,512 | int 2025-09-08T09:34:32,512 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,512 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,512 | ^~~~~ 2025-09-08T09:34:32,513 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,513 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,513 | ~~~~~~~~~~^ 2025-09-08T09:34:32,531 fastphase/fastphaseCython.c:15660:243: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,532 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,532 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,532 | | 2025-09-08T09:34:32,532 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,532 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,532 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,532 | ^~~~ 2025-09-08T09:34:32,532 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,532 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,532 | ~~~~^ 2025-09-08T09:34:32,551 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,551 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,551 | ^~~~~~~~~~ 2025-09-08T09:34:32,551 fastphase/fastphaseCython.c:15660:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,552 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,552 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,552 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,552 213 | PyCode_New( 2025-09-08T09:34:32,552 | ^~~~~~~~~~ 2025-09-08T09:34:32,569 fastphase/fastphaseCython.c:15672:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,569 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,569 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,569 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,570 213 | PyCode_New( 2025-09-08T09:34:32,570 | ^~~~~~~~~~ 2025-09-08T09:34:32,589 fastphase/fastphaseCython.c:15672:246: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,589 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,589 | ^~ 2025-09-08T09:34:32,589 | | 2025-09-08T09:34:32,589 | int 2025-09-08T09:34:32,589 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,589 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,589 | ^~~~~ 2025-09-08T09:34:32,590 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,590 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,590 | ~~~~~~~~~~^ 2025-09-08T09:34:32,609 fastphase/fastphaseCython.c:15672:250: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,609 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,609 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,609 | | 2025-09-08T09:34:32,609 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,609 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,609 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,609 | ^~~~ 2025-09-08T09:34:32,609 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,609 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,610 | ~~~~^ 2025-09-08T09:34:32,628 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,628 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,628 | ^~~~~~~~~~ 2025-09-08T09:34:32,629 fastphase/fastphaseCython.c:15672:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,629 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,629 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,629 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,629 213 | PyCode_New( 2025-09-08T09:34:32,629 | ^~~~~~~~~~ 2025-09-08T09:34:32,646 fastphase/fastphaseCython.c:15687:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,646 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,647 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,647 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,647 213 | PyCode_New( 2025-09-08T09:34:32,647 | ^~~~~~~~~~ 2025-09-08T09:34:32,666 fastphase/fastphaseCython.c:15687:245: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,666 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,666 | ^~~ 2025-09-08T09:34:32,666 | | 2025-09-08T09:34:32,667 | int 2025-09-08T09:34:32,667 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,667 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,667 | ^~~~~ 2025-09-08T09:34:32,667 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,667 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,667 | ~~~~~~~~~~^ 2025-09-08T09:34:32,686 fastphase/fastphaseCython.c:15687:250: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,686 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,686 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,686 | | 2025-09-08T09:34:32,686 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,686 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,687 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,687 | ^~~~ 2025-09-08T09:34:32,687 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,687 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,687 | ~~~~^ 2025-09-08T09:34:32,706 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,706 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,706 | ^~~~~~~~~~ 2025-09-08T09:34:32,706 fastphase/fastphaseCython.c:15687:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,706 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,706 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,706 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,706 213 | PyCode_New( 2025-09-08T09:34:32,706 | ^~~~~~~~~~ 2025-09-08T09:34:32,724 fastphase/fastphaseCython.c:15702:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,724 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,724 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,724 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,724 213 | PyCode_New( 2025-09-08T09:34:32,724 | ^~~~~~~~~~ 2025-09-08T09:34:32,744 fastphase/fastphaseCython.c:15702:238: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,744 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,744 | ^~~ 2025-09-08T09:34:32,744 | | 2025-09-08T09:34:32,744 | int 2025-09-08T09:34:32,744 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,744 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,744 | ^~~~~ 2025-09-08T09:34:32,744 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,744 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,745 | ~~~~~~~~~~^ 2025-09-08T09:34:32,763 fastphase/fastphaseCython.c:15702:243: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,764 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,764 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,764 | | 2025-09-08T09:34:32,764 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,764 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,764 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,764 | ^~~~ 2025-09-08T09:34:32,764 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,764 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,764 | ~~~~^ 2025-09-08T09:34:32,783 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,783 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,783 | ^~~~~~~~~~ 2025-09-08T09:34:32,783 fastphase/fastphaseCython.c:15702:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,784 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,784 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,784 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,784 213 | PyCode_New( 2025-09-08T09:34:32,784 | ^~~~~~~~~~ 2025-09-08T09:34:32,801 fastphase/fastphaseCython.c:15717:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:34:32,802 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,802 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,802 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,802 213 | PyCode_New( 2025-09-08T09:34:32,802 | ^~~~~~~~~~ 2025-09-08T09:34:32,821 fastphase/fastphaseCython.c:15717:241: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:34:32,821 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,821 | ^~~ 2025-09-08T09:34:32,822 | | 2025-09-08T09:34:32,822 | int 2025-09-08T09:34:32,822 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,822 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,822 | ^~~~~ 2025-09-08T09:34:32,822 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:34:32,822 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,822 | ~~~~~~~~~~^ 2025-09-08T09:34:32,841 fastphase/fastphaseCython.c:15717:246: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:34:32,841 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,841 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,841 | | 2025-09-08T09:34:32,841 | PyObject * {aka struct _object *} 2025-09-08T09:34:32,842 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,842 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,842 | ^~~~ 2025-09-08T09:34:32,842 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:34:32,842 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:34:32,842 | ~~~~^ 2025-09-08T09:34:32,861 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:34:32,861 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:34:32,861 | ^~~~~~~~~~ 2025-09-08T09:34:32,861 fastphase/fastphaseCython.c:15717:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:34:32,861 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:34:32,861 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,862 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:34:32,862 213 | PyCode_New( 2025-09-08T09:34:32,862 | ^~~~~~~~~~ 2025-09-08T09:34:32,899 fastphase/fastphaseCython.c: In function ‘__Pyx_ParseOptionalKeywords’: 2025-09-08T09:34:32,926 fastphase/fastphaseCython.c:16241:22: error: implicit declaration of function ‘PyUnicode_GET_SIZE’; did you mean ‘PyDict_GET_SIZE’? [-Wimplicit-function-declaration] 2025-09-08T09:34:32,926 16241 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2025-09-08T09:34:32,926 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T09:34:32,926 | PyDict_GET_SIZE 2025-09-08T09:34:32,944 fastphase/fastphaseCython.c: At top level: 2025-09-08T09:34:32,964 fastphase/fastphaseCython.c:16295:12: fatal error: longintrepr.h: No such file or directory 2025-09-08T09:34:32,964 16295 | #include "longintrepr.h" 2025-09-08T09:34:32,964 | ^~~~~~~~~~~~~~~ 2025-09-08T09:34:32,965 compilation terminated. 2025-09-08T09:34:32,969 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T09:34:33,141 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T09:34:33,152 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T09:34:33,152 exec(compile('"'"''"'"''"'"' 2025-09-08T09:34:33,152 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:34:33,152 # 2025-09-08T09:34:33,152 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T09:34:33,152 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T09:34:33,152 # - It provides a clear error message when setuptools is not installed. 2025-09-08T09:34:33,152 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T09:34:33,152 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T09:34:33,152 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T09:34:33,152 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T09:34:33,152 import os, sys, tokenize, traceback 2025-09-08T09:34:33,152 2025-09-08T09:34:33,152 try: 2025-09-08T09:34:33,152 import setuptools 2025-09-08T09:34:33,152 except ImportError: 2025-09-08T09:34:33,152 print( 2025-09-08T09:34:33,152 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T09:34:33,152 "the build environment with exception:", 2025-09-08T09:34:33,152 file=sys.stderr, 2025-09-08T09:34:33,152 ) 2025-09-08T09:34:33,152 traceback.print_exc() 2025-09-08T09:34:33,152 sys.exit(1) 2025-09-08T09:34:33,152 2025-09-08T09:34:33,152 __file__ = %r 2025-09-08T09:34:33,152 sys.argv[0] = __file__ 2025-09-08T09:34:33,152 2025-09-08T09:34:33,152 if os.path.exists(__file__): 2025-09-08T09:34:33,152 filename = __file__ 2025-09-08T09:34:33,152 with tokenize.open(__file__) as f: 2025-09-08T09:34:33,152 setup_py_code = f.read() 2025-09-08T09:34:33,152 else: 2025-09-08T09:34:33,152 filename = "" 2025-09-08T09:34:33,152 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T09:34:33,152 2025-09-08T09:34:33,152 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:34:33,152 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-58ad253s/hapflk_8ff1c7b693314fa8895cee95974bc8ec/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-axt4t_ck[/] 2025-09-08T09:34:33,152 [bold magenta]cwd[/]: /tmp/pip-wheel-58ad253s/hapflk_8ff1c7b693314fa8895cee95974bc8ec/ 2025-09-08T09:34:33,153 Building wheel for hapflk (setup.py): finished with status 'error' 2025-09-08T09:34:33,153 ERROR: Failed building wheel for hapflk 2025-09-08T09:34:33,154 Running setup.py clean for hapflk 2025-09-08T09:34:33,155 Running command python setup.py clean 2025-09-08T09:34:34,432 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.3.5-dev' to '1.3.5.dev0' 2025-09-08T09:34:34,432 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T09:34:34,434 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:34:34,434 !! 2025-09-08T09:34:34,434 ******************************************************************************** 2025-09-08T09:34:34,435 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:34:34,435 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T09:34:34,435 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:34:34,435 ******************************************************************************** 2025-09-08T09:34:34,435 !! 2025-09-08T09:34:34,435 self._finalize_license_expression() 2025-09-08T09:34:34,511 running clean 2025-09-08T09:34:34,660 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T09:34:34,661 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T09:34:34,661 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T09:34:34,661 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T09:34:34,661 removing 'build' 2025-09-08T09:34:34,797 Failed to build hapflk 2025-09-08T09:34:34,798 ERROR: Failed to build one or more wheels 2025-09-08T09:34:34,798 Exception information: 2025-09-08T09:34:34,798 Traceback (most recent call last): 2025-09-08T09:34:34,798 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T09:34:34,798 status = _inner_run() 2025-09-08T09:34:34,798 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T09:34:34,798 return self.run(options, args) 2025-09-08T09:34:34,798 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T09:34:34,798 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T09:34:34,798 return func(self, options, args) 2025-09-08T09:34:34,798 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T09:34:34,798 raise CommandError("Failed to build one or more wheels") 2025-09-08T09:34:34,798 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T09:34:34,803 Removed build tracker: '/tmp/pip-build-tracker-j7p2d_cq'