2025-09-08T09:35:08,075 Created temporary directory: /tmp/pip-build-tracker-oz_m0h8c 2025-09-08T09:35:08,076 Initialized build tracking at /tmp/pip-build-tracker-oz_m0h8c 2025-09-08T09:35:08,076 Created build tracker: /tmp/pip-build-tracker-oz_m0h8c 2025-09-08T09:35:08,076 Entered build tracker: /tmp/pip-build-tracker-oz_m0h8c 2025-09-08T09:35:08,076 Created temporary directory: /tmp/pip-wheel-mhwr0i0d 2025-09-08T09:35:08,080 Created temporary directory: /tmp/pip-ephem-wheel-cache-lm1jd9jc 2025-09-08T09:35:08,139 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T09:35:08,141 2 location(s) to search for versions of hapflk: 2025-09-08T09:35:08,141 * https://pypi.org/simple/hapflk/ 2025-09-08T09:35:08,141 * https://www.piwheels.org/simple/hapflk/ 2025-09-08T09:35:08,142 Fetching project page and analyzing links: https://pypi.org/simple/hapflk/ 2025-09-08T09:35:08,142 Getting page https://pypi.org/simple/hapflk/ 2025-09-08T09:35:08,143 Found index url https://pypi.org/simple/ 2025-09-08T09:35:08,212 Fetched page https://pypi.org/simple/hapflk/ as application/vnd.pypi.simple.v1+json 2025-09-08T09:35:08,214 Found link https://files.pythonhosted.org/packages/b2/ad/85999140cbc66853d701f214fd6548aab07dc46fe29c2d8632c332e97689/hapflk-1.3.2.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.2 2025-09-08T09:35:08,215 Found link https://files.pythonhosted.org/packages/ca/fa/51a8f51e01fbc13e8f4b36acbdb6d31188481f4c1ce440b8797ec769d910/hapflk-1.3.3.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.3 2025-09-08T09:35:08,215 Found link https://files.pythonhosted.org/packages/63/d9/33d91f8a3376ab13ffc0a102caa32a2332fccda2db96009f7cf317593e1b/hapflk-1.3.4.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.4 2025-09-08T09:35:08,215 Found link https://files.pythonhosted.org/packages/65/21/a92bba282c49dcacbdb002ed60a7a9b2bddfb98f7eedc382a3d0c134abe7/hapflk-1.3.5.dev0.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev0 2025-09-08T09:35:08,216 Found link https://files.pythonhosted.org/packages/6b/81/cc8f04f774e8728b5167bc58ae12eb4fb2125b784a395fdfefb3e78f7733/hapflk-1.3.5.dev1.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev1 2025-09-08T09:35:08,216 Found link https://files.pythonhosted.org/packages/f8/34/1bd9c49ea13e6be4afec643acfe9f960ae6714fea4d5499a75988e81663e/hapflk-1.3.5.dev2.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev2 2025-09-08T09:35:08,216 Found link https://files.pythonhosted.org/packages/96/14/256f0eda9b570de3b48a7fcff1d062ab7694bd32e7f2ad7ef8bd483b926f/hapflk-1.3.5.dev3.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev3 2025-09-08T09:35:08,216 Found link https://files.pythonhosted.org/packages/aa/c6/c72917e6d4492061b47104c7922b0368c38be20b87bf3e0553d8824a9cfe/hapflk-1.3.5.dev4.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev4 2025-09-08T09:35:08,216 Found link https://files.pythonhosted.org/packages/a4/96/4b534230ad9ea961235c5841bde1054bacbb574f88fe19324a776d4b0992/hapflk-1.3.5.dev5.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev5 2025-09-08T09:35:08,217 Found link https://files.pythonhosted.org/packages/5c/f9/f5bd0ea0712da4d11795fda5b40c44be0421a85d6b05f8e9687ce30b8089/hapflk-1.3.5.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5 2025-09-08T09:35:08,217 Found link https://files.pythonhosted.org/packages/51/c4/ed7b823aa136185d750d60f53268cfb6804dcc87183dbe216135e63aa583/hapflk-1.4.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.4 2025-09-08T09:35:08,217 Found link https://files.pythonhosted.org/packages/c6/a6/ed1b0c03bdb79de6f288c5e982af3afcaae7a26cdd00ff75dd98bf81a13e/hapflk-2.0.dev0.tar.gz (from https://pypi.org/simple/hapflk/), version: 2.0.dev0 2025-09-08T09:35:08,217 Found link https://files.pythonhosted.org/packages/30/60/1dab8e6a54e7ef2c19a62114527d5512da17a09a590d5551610b2fce8195/hapflk-2.0.dev1.tar.gz (from https://pypi.org/simple/hapflk/), version: 2.0.dev1 2025-09-08T09:35:08,218 Found link https://files.pythonhosted.org/packages/89/5d/fa3af0a5d868d5154d1516696a317c13bcb686706143ec2052f789e17017/hapflk-2.0.dev2.tar.gz (from https://pypi.org/simple/hapflk/), version: 2.0.dev2 2025-09-08T09:35:08,218 Skipping link: No binaries permitted for hapflk: https://files.pythonhosted.org/packages/17/3e/be1a90cc099e9ab4e2031be8539dad16495f9fc61f72424cee5dd0260f08/hapflk-2.1-py3-none-any.whl (from https://pypi.org/simple/hapflk/) (requires-python:>=3.8) 2025-09-08T09:35:08,218 Found link https://files.pythonhosted.org/packages/6c/ea/807cf8f36f1af15848db5264d8af4a260c081525943a932d69a81543ca8e/hapflk-2.1.tar.gz (from https://pypi.org/simple/hapflk/) (requires-python:>=3.8), version: 2.1 2025-09-08T09:35:08,219 Fetching project page and analyzing links: https://www.piwheels.org/simple/hapflk/ 2025-09-08T09:35:08,219 Getting page https://www.piwheels.org/simple/hapflk/ 2025-09-08T09:35:08,220 Found index url https://www.piwheels.org/simple/ 2025-09-08T09:35:08,316 Fetched page https://www.piwheels.org/simple/hapflk/ as text/html 2025-09-08T09:35:08,322 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-2.1-py3-none-any.whl#sha256=12ca832837ecb12292516fbb6ab0aff875d2be9a41f09362808a6973e3b3114e (from https://www.piwheels.org/simple/hapflk/) (requires-python:>=3.8) 2025-09-08T09:35:08,322 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.4-cp35-cp35m-linux_armv6l.whl#sha256=f7038eca9bba9d085b3b2ba6c6cba6778b3767a641d8c77b4a6770167d4d322d (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,322 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.4-cp35-cp35m-linux_armv7l.whl#sha256=f7038eca9bba9d085b3b2ba6c6cba6778b3767a641d8c77b4a6770167d4d322d (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,322 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.4-cp34-cp34m-linux_armv7l.whl#sha256=fb3798d9a4c7b3e2fb4b977a8d6dc3ae44b4cb0102ca67167d58182da2bdce0b (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,323 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5-cp35-cp35m-linux_armv6l.whl#sha256=73ecd00dcf029388178f31b3cbf3c04cbb264f752a6d05214bd6df8db316df6f (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,323 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5-cp35-cp35m-linux_armv7l.whl#sha256=73ecd00dcf029388178f31b3cbf3c04cbb264f752a6d05214bd6df8db316df6f (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,323 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5-cp34-cp34m-linux_armv7l.whl#sha256=5a64b9b9dae78e36eca456a2e9709b21d7a7bdb908a3d47e2b6529e1a5a64d1b (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,323 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev5-cp34-cp34m-linux_armv7l.whl#sha256=fc973aad2b2ab1f031c8f17bd84b9707d283a7ce888fd944c7af2b0a925a4deb (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,323 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev5-cp35-cp35m-linux_armv7l.whl#sha256=2801d5ffbdc9b9fcbf8e6cce77a1514b01ca28f562e550bfd093296db4ef9a95 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,323 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev5-cp35-cp35m-linux_armv6l.whl#sha256=2801d5ffbdc9b9fcbf8e6cce77a1514b01ca28f562e550bfd093296db4ef9a95 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,323 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev4-cp35-cp35m-linux_armv6l.whl#sha256=36fb4c6462ef30dda62684182251105eb2c822311065fd8ecd3b8a50f71ff244 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,323 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev4-cp35-cp35m-linux_armv7l.whl#sha256=36fb4c6462ef30dda62684182251105eb2c822311065fd8ecd3b8a50f71ff244 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,324 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev4-cp34-cp34m-linux_armv7l.whl#sha256=ba9a150f4c149df5b850e3dd31a6b7c442c50be76885355dc4a61611769ea367 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,324 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev3-cp34-cp34m-linux_armv7l.whl#sha256=12a3afe8bcb1936f5e30f374a25c6c3ad3f95ae5f59debcd89d3411d54899c86 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,324 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev3-cp35-cp35m-linux_armv7l.whl#sha256=e102a09db17e00ce4674077242b8abe77b140ccbc28084bc872a84f6a1f5dab0 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,324 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev3-cp35-cp35m-linux_armv6l.whl#sha256=e102a09db17e00ce4674077242b8abe77b140ccbc28084bc872a84f6a1f5dab0 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,324 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev2-cp34-cp34m-linux_armv7l.whl#sha256=12bd84214f6f58f4c6f555ae0634e7113ce57a3acdd1f6d868c9e7af24fa02b9 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,324 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev2-cp35-cp35m-linux_armv7l.whl#sha256=85ee36207b1cd90230358cc0a26778bda8e49013f9d5f7c8ceb5cea13e0dc6c1 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,324 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev2-cp35-cp35m-linux_armv6l.whl#sha256=85ee36207b1cd90230358cc0a26778bda8e49013f9d5f7c8ceb5cea13e0dc6c1 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,324 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev1-cp34-cp34m-linux_armv7l.whl#sha256=bab3585f6d546ed89812d88ba4d53169fec7ed73ea4998b71ff15b044cac28fb (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,325 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev1-cp35-cp35m-linux_armv6l.whl#sha256=35e24788097f96d5805a7deb3fb82097bd48e535242bc017451a29d7b7330b64 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,325 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev1-cp35-cp35m-linux_armv7l.whl#sha256=35e24788097f96d5805a7deb3fb82097bd48e535242bc017451a29d7b7330b64 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,325 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev0-cp34-cp34m-linux_armv7l.whl#sha256=7bc675908db24bc875711def8f5103a4072f0708f3aa25e4947ca14666b6175b (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,325 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev0-cp35-cp35m-linux_armv6l.whl#sha256=b3c6463a3333cb6d9246c27e81417b47bf70e14044a9c20fe9f11bed9b674215 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,325 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.5.dev0-cp35-cp35m-linux_armv7l.whl#sha256=b3c6463a3333cb6d9246c27e81417b47bf70e14044a9c20fe9f11bed9b674215 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,325 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.4-cp35-cp35m-linux_armv7l.whl#sha256=800b7833e4834c2b1376c8720f91d0a268d68f015607f79809e1ee7029ef2037 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,325 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.4-cp35-cp35m-linux_armv6l.whl#sha256=800b7833e4834c2b1376c8720f91d0a268d68f015607f79809e1ee7029ef2037 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,325 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.4-cp34-cp34m-linux_armv7l.whl#sha256=90f903ac669e6630c734222d9d32160aba9bcc7bccfa461f13f96d6003c1c935 (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,326 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.3-cp35-cp35m-linux_armv7l.whl#sha256=b75ac5587497663f5dc6408cb449fac164d073dc6484492b692955d58e16cf6f (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,326 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.3-cp35-cp35m-linux_armv6l.whl#sha256=b75ac5587497663f5dc6408cb449fac164d073dc6484492b692955d58e16cf6f (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,326 Skipping link: No binaries permitted for hapflk: https://archive1.piwheels.org/simple/hapflk/hapflk-1.3.3-cp34-cp34m-linux_armv7l.whl#sha256=4f02cb00f9b7473476979a98ce9531d641cf13cc2bc2b300a8d9c3d64d8deceb (from https://www.piwheels.org/simple/hapflk/) 2025-09-08T09:35:08,326 Skipping link: not a file: https://www.piwheels.org/simple/hapflk/ 2025-09-08T09:35:08,326 Skipping link: not a file: https://pypi.org/simple/hapflk/ 2025-09-08T09:35:08,356 Given no hashes to check 1 links for project 'hapflk': discarding no candidates 2025-09-08T09:35:08,357 Collecting hapflk==1.3.5.dev5 2025-09-08T09:35:08,359 Created temporary directory: /tmp/pip-unpack-5plzhdtq 2025-09-08T09:35:08,498 Downloading hapflk-1.3.5.dev5.tar.gz (276 kB) 2025-09-08T09:35:08,597 Added hapflk==1.3.5.dev5 from https://files.pythonhosted.org/packages/a4/96/4b534230ad9ea961235c5841bde1054bacbb574f88fe19324a776d4b0992/hapflk-1.3.5.dev5.tar.gz to build tracker '/tmp/pip-build-tracker-oz_m0h8c' 2025-09-08T09:35:08,598 Running setup.py (path:/tmp/pip-wheel-mhwr0i0d/hapflk_eb10eb9d478540c08edbc03cc7e67acc/setup.py) egg_info for package hapflk 2025-09-08T09:35:08,598 Created temporary directory: /tmp/pip-pip-egg-info-ryhlbeh0 2025-09-08T09:35:08,598 Preparing metadata (setup.py): started 2025-09-08T09:35:08,599 Running command python setup.py egg_info 2025-09-08T09:35:10,159 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:35:10,159 !! 2025-09-08T09:35:10,160 ******************************************************************************** 2025-09-08T09:35:10,160 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:35:10,160 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T09:35:10,160 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:35:10,160 ******************************************************************************** 2025-09-08T09:35:10,160 !! 2025-09-08T09:35:10,160 self._finalize_license_expression() 2025-09-08T09:35:10,234 running egg_info 2025-09-08T09:35:10,311 creating /tmp/pip-pip-egg-info-ryhlbeh0/hapflk.egg-info 2025-09-08T09:35:10,311 writing /tmp/pip-pip-egg-info-ryhlbeh0/hapflk.egg-info/PKG-INFO 2025-09-08T09:35:10,312 writing dependency_links to /tmp/pip-pip-egg-info-ryhlbeh0/hapflk.egg-info/dependency_links.txt 2025-09-08T09:35:10,313 writing top-level names to /tmp/pip-pip-egg-info-ryhlbeh0/hapflk.egg-info/top_level.txt 2025-09-08T09:35:10,313 writing manifest file '/tmp/pip-pip-egg-info-ryhlbeh0/hapflk.egg-info/SOURCES.txt' 2025-09-08T09:35:10,686 reading manifest file '/tmp/pip-pip-egg-info-ryhlbeh0/hapflk.egg-info/SOURCES.txt' 2025-09-08T09:35:10,686 reading manifest template 'MANIFEST.in' 2025-09-08T09:35:10,688 adding license file 'LICENSE.txt' 2025-09-08T09:35:10,688 adding license file 'COPYING.txt' 2025-09-08T09:35:10,690 writing manifest file '/tmp/pip-pip-egg-info-ryhlbeh0/hapflk.egg-info/SOURCES.txt' 2025-09-08T09:35:10,826 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T09:35:10,831 Source in /tmp/pip-wheel-mhwr0i0d/hapflk_eb10eb9d478540c08edbc03cc7e67acc has version 1.3.5.dev5, which satisfies requirement hapflk==1.3.5.dev5 from https://files.pythonhosted.org/packages/a4/96/4b534230ad9ea961235c5841bde1054bacbb574f88fe19324a776d4b0992/hapflk-1.3.5.dev5.tar.gz 2025-09-08T09:35:10,832 Removed hapflk==1.3.5.dev5 from https://files.pythonhosted.org/packages/a4/96/4b534230ad9ea961235c5841bde1054bacbb574f88fe19324a776d4b0992/hapflk-1.3.5.dev5.tar.gz from build tracker '/tmp/pip-build-tracker-oz_m0h8c' 2025-09-08T09:35:10,835 Created temporary directory: /tmp/pip-unpack-m5juge3s 2025-09-08T09:35:10,835 Created temporary directory: /tmp/pip-unpack-qnahf85p 2025-09-08T09:35:10,836 Building wheels for collected packages: hapflk 2025-09-08T09:35:10,837 Created temporary directory: /tmp/pip-wheel-eburztwh 2025-09-08T09:35:10,837 DEPRECATION: Building 'hapflk' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hapflk'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T09:35:10,839 Building wheel for hapflk (setup.py): started 2025-09-08T09:35:10,840 Destination directory: /tmp/pip-wheel-eburztwh 2025-09-08T09:35:10,840 Running command python setup.py bdist_wheel 2025-09-08T09:35:12,151 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:35:12,151 !! 2025-09-08T09:35:12,151 ******************************************************************************** 2025-09-08T09:35:12,151 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:35:12,152 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T09:35:12,152 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:35:12,152 ******************************************************************************** 2025-09-08T09:35:12,152 !! 2025-09-08T09:35:12,152 self._finalize_license_expression() 2025-09-08T09:35:12,153 running bdist_wheel 2025-09-08T09:35:12,523 running build 2025-09-08T09:35:12,523 running build_py 2025-09-08T09:35:12,601 creating build/lib.linux-armv7l-cpython-313/fastphase 2025-09-08T09:35:12,601 copying fastphase/__init__.py -> build/lib.linux-armv7l-cpython-313/fastphase 2025-09-08T09:35:12,602 creating build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:35:12,602 copying hapflk/popgen.py -> build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:35:12,603 copying hapflk/InputOutput.py -> build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:35:12,604 copying hapflk/nj.py -> build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:35:12,604 copying hapflk/data.py -> build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:35:12,605 copying hapflk/__init__.py -> build/lib.linux-armv7l-cpython-313/hapflk 2025-09-08T09:35:12,607 running build_ext 2025-09-08T09:35:12,931 building 'fastphaseCython' extension 2025-09-08T09:35:12,932 creating build/temp.linux-armv7l-cpython-313/fastphase 2025-09-08T09:35:12,932 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c fastphase/fastphaseCython.c -o build/temp.linux-armv7l-cpython-313/fastphase/fastphaseCython.o 2025-09-08T09:35:13,347 fastphase/fastphaseCython.c: In function ‘__Pyx_ListComp_Append’: 2025-09-08T09:35:13,347 fastphase/fastphaseCython.c:916:23: error: lvalue required as left operand of assignment 2025-09-08T09:35:13,347 916 | Py_SIZE(list) = len+1; 2025-09-08T09:35:13,347 | ^ 2025-09-08T09:35:13,348 fastphase/fastphaseCython.c: In function ‘__Pyx_PyList_Append’: 2025-09-08T09:35:13,348 fastphase/fastphaseCython.c:975:23: error: lvalue required as left operand of assignment 2025-09-08T09:35:13,348 975 | Py_SIZE(list) = len+1; 2025-09-08T09:35:13,348 | ^ 2025-09-08T09:35:13,443 fastphase/fastphaseCython.c: In function ‘__pyx_pf_15fastphaseCython_9fastphase___init__’: 2025-09-08T09:35:13,447 fastphase/fastphaseCython.c:4188:3: warning: ‘Py_OptimizeFlag’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:13,447 4188 | if (unlikely(!Py_OptimizeFlag)) { 2025-09-08T09:35:13,447 | ^~ 2025-09-08T09:35:13,447 In file included from /usr/include/python3.13/Python.h:76, 2025-09-08T09:35:13,447 from fastphase/fastphaseCython.c:4: 2025-09-08T09:35:13,448 /usr/include/python3.13/cpython/pydebug.h:13:37: note: declared here 2025-09-08T09:35:13,448 13 | Py_DEPRECATED(3.12) PyAPI_DATA(int) Py_OptimizeFlag; 2025-09-08T09:35:13,448 | ^~~~~~~~~~~~~~~ 2025-09-08T09:35:13,453 fastphase/fastphaseCython.c: In function ‘__pyx_pf_15fastphaseCython_9fastphase_4addHaplotype’: 2025-09-08T09:35:13,458 fastphase/fastphaseCython.c:4463:7: warning: ‘Py_OptimizeFlag’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:13,458 4463 | if (unlikely(!Py_OptimizeFlag)) { 2025-09-08T09:35:13,458 | ^~ 2025-09-08T09:35:13,458 /usr/include/python3.13/cpython/pydebug.h:13:37: note: declared here 2025-09-08T09:35:13,458 13 | Py_DEPRECATED(3.12) PyAPI_DATA(int) Py_OptimizeFlag; 2025-09-08T09:35:13,458 | ^~~~~~~~~~~~~~~ 2025-09-08T09:35:13,465 fastphase/fastphaseCython.c: In function ‘__pyx_pf_15fastphaseCython_9fastphase_6addGenotype’: 2025-09-08T09:35:13,470 fastphase/fastphaseCython.c:4749:7: warning: ‘Py_OptimizeFlag’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:13,470 4749 | if (unlikely(!Py_OptimizeFlag)) { 2025-09-08T09:35:13,470 | ^~ 2025-09-08T09:35:13,470 /usr/include/python3.13/cpython/pydebug.h:13:37: note: declared here 2025-09-08T09:35:13,470 13 | Py_DEPRECATED(3.12) PyAPI_DATA(int) Py_OptimizeFlag; 2025-09-08T09:35:13,470 | ^~~~~~~~~~~~~~~ 2025-09-08T09:35:14,707 fastphase/fastphaseCython.c: In function ‘__pyx_pf_5numpy_7ndarray___getbuffer__’: 2025-09-08T09:35:14,728 fastphase/fastphaseCython.c:13311:50: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_C_CONTIGUOUS’? 2025-09-08T09:35:14,728 13311 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_C_CONTIGUOUS) != 0)) != 0); 2025-09-08T09:35:14,728 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:14,729 | PyBUF_C_CONTIGUOUS 2025-09-08T09:35:14,730 fastphase/fastphaseCython.c:13311:50: note: each undeclared identifier is reported only once for each function it appears in 2025-09-08T09:35:14,773 fastphase/fastphaseCython.c:13367:50: error: ‘NPY_F_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_F_CONTIGUOUS’? 2025-09-08T09:35:14,773 13367 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0); 2025-09-08T09:35:14,773 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:14,773 | PyBUF_F_CONTIGUOUS 2025-09-08T09:35:14,780 fastphase/fastphaseCython.c: In function ‘__pyx_f_5numpy__util_dtypestring’: 2025-09-08T09:35:14,796 fastphase/fastphaseCython.c:14433:29: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T09:35:14,796 14433 | if (unlikely(__pyx_v_descr->names == Py_None)) { 2025-09-08T09:35:14,796 | ^~ 2025-09-08T09:35:14,796 fastphase/fastphaseCython.c:434:43: note: in definition of macro ‘unlikely’ 2025-09-08T09:35:14,796 434 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T09:35:14,797 | ^ 2025-09-08T09:35:14,814 fastphase/fastphaseCython.c:14437:28: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T09:35:14,815 14437 | __pyx_t_1 = __pyx_v_descr->names; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0; 2025-09-08T09:35:14,815 | ^~ 2025-09-08T09:35:14,835 fastphase/fastphaseCython.c:14456:31: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T09:35:14,835 14456 | if (unlikely(__pyx_v_descr->fields == Py_None)) { 2025-09-08T09:35:14,835 | ^~ 2025-09-08T09:35:14,835 fastphase/fastphaseCython.c:434:43: note: in definition of macro ‘unlikely’ 2025-09-08T09:35:14,835 434 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T09:35:14,835 | ^ 2025-09-08T09:35:14,853 fastphase/fastphaseCython.c:14460:51: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T09:35:14,853 14460 | __pyx_t_3 = __Pyx_PyDict_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 795; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; 2025-09-08T09:35:14,854 | ^~ 2025-09-08T09:35:14,884 fastphase/fastphaseCython.c:14665:79: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘elsize’ 2025-09-08T09:35:14,884 14665 | (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + __pyx_v_child->elsize); 2025-09-08T09:35:14,884 | ^~ 2025-09-08T09:35:14,901 fastphase/fastphaseCython.c: In function ‘__Pyx_InitCachedConstants’: 2025-09-08T09:35:14,918 fastphase/fastphaseCython.c:15588:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:14,918 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:14,919 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:14,919 In file included from /usr/include/python3.13/Python.h:101: 2025-09-08T09:35:14,919 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:14,919 213 | PyCode_New( 2025-09-08T09:35:14,919 | ^~~~~~~~~~ 2025-09-08T09:35:14,938 fastphase/fastphaseCython.c:15588:238: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:14,939 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:14,939 | ^~ 2025-09-08T09:35:14,939 | | 2025-09-08T09:35:14,939 | int 2025-09-08T09:35:14,939 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:14,939 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:14,939 | ^~~~~ 2025-09-08T09:35:14,939 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:14,939 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:14,939 | ~~~~~~~~~~^ 2025-09-08T09:35:14,960 fastphase/fastphaseCython.c:15588:242: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:14,960 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:14,960 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:14,960 | | 2025-09-08T09:35:14,960 | PyObject * {aka struct _object *} 2025-09-08T09:35:14,960 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:14,961 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:14,961 | ^~~~ 2025-09-08T09:35:14,961 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:14,961 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:14,961 | ~~~~^ 2025-09-08T09:35:14,979 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:14,980 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:14,980 | ^~~~~~~~~~ 2025-09-08T09:35:14,980 fastphase/fastphaseCython.c:15588:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:14,980 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:14,980 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:14,980 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:14,980 213 | PyCode_New( 2025-09-08T09:35:14,980 | ^~~~~~~~~~ 2025-09-08T09:35:15,000 fastphase/fastphaseCython.c:15600:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:15,000 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,000 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,000 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,000 213 | PyCode_New( 2025-09-08T09:35:15,000 | ^~~~~~~~~~ 2025-09-08T09:35:15,019 fastphase/fastphaseCython.c:15600:244: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:15,019 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,020 | ^~ 2025-09-08T09:35:15,020 | | 2025-09-08T09:35:15,020 | int 2025-09-08T09:35:15,020 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,020 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,020 | ^~~~~ 2025-09-08T09:35:15,020 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:15,020 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,020 | ~~~~~~~~~~^ 2025-09-08T09:35:15,042 fastphase/fastphaseCython.c:15600:248: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:15,042 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,042 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,042 | | 2025-09-08T09:35:15,042 | PyObject * {aka struct _object *} 2025-09-08T09:35:15,042 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,042 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,042 | ^~~~ 2025-09-08T09:35:15,043 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:15,043 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,043 | ~~~~^ 2025-09-08T09:35:15,061 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:15,061 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,061 | ^~~~~~~~~~ 2025-09-08T09:35:15,062 fastphase/fastphaseCython.c:15600:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,062 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,062 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,062 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,062 213 | PyCode_New( 2025-09-08T09:35:15,062 | ^~~~~~~~~~ 2025-09-08T09:35:15,079 fastphase/fastphaseCython.c:15612:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:15,079 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,079 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,079 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,079 213 | PyCode_New( 2025-09-08T09:35:15,080 | ^~~~~~~~~~ 2025-09-08T09:35:15,099 fastphase/fastphaseCython.c:15612:245: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:15,099 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,099 | ^~ 2025-09-08T09:35:15,099 | | 2025-09-08T09:35:15,099 | int 2025-09-08T09:35:15,099 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,099 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,099 | ^~~~~ 2025-09-08T09:35:15,099 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:15,100 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,100 | ~~~~~~~~~~^ 2025-09-08T09:35:15,118 fastphase/fastphaseCython.c:15612:249: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:15,118 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,118 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,119 | | 2025-09-08T09:35:15,119 | PyObject * {aka struct _object *} 2025-09-08T09:35:15,119 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,119 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,119 | ^~~~ 2025-09-08T09:35:15,119 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:15,119 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,119 | ~~~~^ 2025-09-08T09:35:15,138 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:15,138 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,138 | ^~~~~~~~~~ 2025-09-08T09:35:15,138 fastphase/fastphaseCython.c:15612:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,138 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,138 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,139 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,139 213 | PyCode_New( 2025-09-08T09:35:15,139 | ^~~~~~~~~~ 2025-09-08T09:35:15,156 fastphase/fastphaseCython.c:15624:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:15,156 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,156 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,156 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,156 213 | PyCode_New( 2025-09-08T09:35:15,156 | ^~~~~~~~~~ 2025-09-08T09:35:15,175 fastphase/fastphaseCython.c:15624:240: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:15,175 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,176 | ^~ 2025-09-08T09:35:15,176 | | 2025-09-08T09:35:15,176 | int 2025-09-08T09:35:15,176 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,176 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,176 | ^~~~~ 2025-09-08T09:35:15,176 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:15,176 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,176 | ~~~~~~~~~~^ 2025-09-08T09:35:15,195 fastphase/fastphaseCython.c:15624:244: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:15,195 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,195 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,195 | | 2025-09-08T09:35:15,195 | PyObject * {aka struct _object *} 2025-09-08T09:35:15,196 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,196 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,196 | ^~~~ 2025-09-08T09:35:15,196 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:15,196 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,196 | ~~~~^ 2025-09-08T09:35:15,215 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:15,215 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,215 | ^~~~~~~~~~ 2025-09-08T09:35:15,215 fastphase/fastphaseCython.c:15624:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,215 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,215 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,215 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,215 213 | PyCode_New( 2025-09-08T09:35:15,215 | ^~~~~~~~~~ 2025-09-08T09:35:15,232 fastphase/fastphaseCython.c:15636:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:15,233 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,233 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,233 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,233 213 | PyCode_New( 2025-09-08T09:35:15,233 | ^~~~~~~~~~ 2025-09-08T09:35:15,252 fastphase/fastphaseCython.c:15636:239: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:15,252 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,252 | ^~ 2025-09-08T09:35:15,252 | | 2025-09-08T09:35:15,253 | int 2025-09-08T09:35:15,253 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,253 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,253 | ^~~~~ 2025-09-08T09:35:15,253 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:15,253 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,253 | ~~~~~~~~~~^ 2025-09-08T09:35:15,272 fastphase/fastphaseCython.c:15636:243: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:15,272 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,272 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,272 | | 2025-09-08T09:35:15,272 | PyObject * {aka struct _object *} 2025-09-08T09:35:15,272 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,272 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,272 | ^~~~ 2025-09-08T09:35:15,273 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:15,273 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,273 | ~~~~^ 2025-09-08T09:35:15,291 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:15,292 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,292 | ^~~~~~~~~~ 2025-09-08T09:35:15,292 fastphase/fastphaseCython.c:15636:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,292 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,292 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,292 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,292 213 | PyCode_New( 2025-09-08T09:35:15,292 | ^~~~~~~~~~ 2025-09-08T09:35:15,309 fastphase/fastphaseCython.c:15648:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:15,309 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,310 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,310 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,310 213 | PyCode_New( 2025-09-08T09:35:15,310 | ^~~~~~~~~~ 2025-09-08T09:35:15,329 fastphase/fastphaseCython.c:15648:238: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:15,329 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,329 | ^~ 2025-09-08T09:35:15,329 | | 2025-09-08T09:35:15,329 | int 2025-09-08T09:35:15,329 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,329 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,330 | ^~~~~ 2025-09-08T09:35:15,330 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:15,330 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,330 | ~~~~~~~~~~^ 2025-09-08T09:35:15,349 fastphase/fastphaseCython.c:15648:242: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:15,349 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,349 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,349 | | 2025-09-08T09:35:15,349 | PyObject * {aka struct _object *} 2025-09-08T09:35:15,349 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,349 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,349 | ^~~~ 2025-09-08T09:35:15,349 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:15,350 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,350 | ~~~~^ 2025-09-08T09:35:15,368 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:15,368 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,368 | ^~~~~~~~~~ 2025-09-08T09:35:15,369 fastphase/fastphaseCython.c:15648:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,369 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,369 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,369 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,369 213 | PyCode_New( 2025-09-08T09:35:15,369 | ^~~~~~~~~~ 2025-09-08T09:35:15,386 fastphase/fastphaseCython.c:15660:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:15,386 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,386 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,386 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,387 213 | PyCode_New( 2025-09-08T09:35:15,387 | ^~~~~~~~~~ 2025-09-08T09:35:15,406 fastphase/fastphaseCython.c:15660:239: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:15,406 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,406 | ^~ 2025-09-08T09:35:15,406 | | 2025-09-08T09:35:15,406 | int 2025-09-08T09:35:15,406 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,406 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,406 | ^~~~~ 2025-09-08T09:35:15,407 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:15,407 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,407 | ~~~~~~~~~~^ 2025-09-08T09:35:15,425 fastphase/fastphaseCython.c:15660:243: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:15,426 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,426 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,426 | | 2025-09-08T09:35:15,426 | PyObject * {aka struct _object *} 2025-09-08T09:35:15,426 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,426 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,426 | ^~~~ 2025-09-08T09:35:15,426 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:15,426 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,427 | ~~~~^ 2025-09-08T09:35:15,445 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:15,445 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,445 | ^~~~~~~~~~ 2025-09-08T09:35:15,446 fastphase/fastphaseCython.c:15660:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,446 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,446 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,446 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,446 213 | PyCode_New( 2025-09-08T09:35:15,446 | ^~~~~~~~~~ 2025-09-08T09:35:15,463 fastphase/fastphaseCython.c:15672:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:15,463 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,463 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,463 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,464 213 | PyCode_New( 2025-09-08T09:35:15,464 | ^~~~~~~~~~ 2025-09-08T09:35:15,483 fastphase/fastphaseCython.c:15672:246: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:15,483 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,483 | ^~ 2025-09-08T09:35:15,483 | | 2025-09-08T09:35:15,483 | int 2025-09-08T09:35:15,483 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,483 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,483 | ^~~~~ 2025-09-08T09:35:15,484 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:15,484 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,484 | ~~~~~~~~~~^ 2025-09-08T09:35:15,502 fastphase/fastphaseCython.c:15672:250: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:15,503 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,503 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,503 | | 2025-09-08T09:35:15,503 | PyObject * {aka struct _object *} 2025-09-08T09:35:15,503 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,503 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,503 | ^~~~ 2025-09-08T09:35:15,503 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:15,503 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,504 | ~~~~^ 2025-09-08T09:35:15,522 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:15,522 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,522 | ^~~~~~~~~~ 2025-09-08T09:35:15,522 fastphase/fastphaseCython.c:15672:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,523 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,523 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,523 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,523 213 | PyCode_New( 2025-09-08T09:35:15,523 | ^~~~~~~~~~ 2025-09-08T09:35:15,540 fastphase/fastphaseCython.c:15687:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:15,540 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,540 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,541 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,541 213 | PyCode_New( 2025-09-08T09:35:15,541 | ^~~~~~~~~~ 2025-09-08T09:35:15,560 fastphase/fastphaseCython.c:15687:245: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:15,560 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,560 | ^~~ 2025-09-08T09:35:15,560 | | 2025-09-08T09:35:15,560 | int 2025-09-08T09:35:15,560 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,561 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,561 | ^~~~~ 2025-09-08T09:35:15,561 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:15,561 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,561 | ~~~~~~~~~~^ 2025-09-08T09:35:15,580 fastphase/fastphaseCython.c:15687:250: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:15,580 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,580 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,580 | | 2025-09-08T09:35:15,580 | PyObject * {aka struct _object *} 2025-09-08T09:35:15,580 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,580 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,580 | ^~~~ 2025-09-08T09:35:15,581 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:15,581 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,581 | ~~~~^ 2025-09-08T09:35:15,599 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:15,600 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,600 | ^~~~~~~~~~ 2025-09-08T09:35:15,600 fastphase/fastphaseCython.c:15687:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,600 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,600 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,600 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,600 213 | PyCode_New( 2025-09-08T09:35:15,600 | ^~~~~~~~~~ 2025-09-08T09:35:15,618 fastphase/fastphaseCython.c:15702:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:15,618 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,618 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,618 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,618 213 | PyCode_New( 2025-09-08T09:35:15,618 | ^~~~~~~~~~ 2025-09-08T09:35:15,637 fastphase/fastphaseCython.c:15702:238: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:15,638 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,638 | ^~~ 2025-09-08T09:35:15,638 | | 2025-09-08T09:35:15,638 | int 2025-09-08T09:35:15,638 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,638 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,638 | ^~~~~ 2025-09-08T09:35:15,638 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:15,638 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,638 | ~~~~~~~~~~^ 2025-09-08T09:35:15,657 fastphase/fastphaseCython.c:15702:243: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:15,657 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,657 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,658 | | 2025-09-08T09:35:15,658 | PyObject * {aka struct _object *} 2025-09-08T09:35:15,658 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,658 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,658 | ^~~~ 2025-09-08T09:35:15,658 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:15,658 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,658 | ~~~~^ 2025-09-08T09:35:15,677 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:15,677 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,677 | ^~~~~~~~~~ 2025-09-08T09:35:15,677 fastphase/fastphaseCython.c:15702:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,677 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,678 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,678 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,678 213 | PyCode_New( 2025-09-08T09:35:15,678 | ^~~~~~~~~~ 2025-09-08T09:35:15,695 fastphase/fastphaseCython.c:15717:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T09:35:15,695 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,695 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,696 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,696 213 | PyCode_New( 2025-09-08T09:35:15,696 | ^~~~~~~~~~ 2025-09-08T09:35:15,715 fastphase/fastphaseCython.c:15717:241: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T09:35:15,715 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,715 | ^~~ 2025-09-08T09:35:15,715 | | 2025-09-08T09:35:15,715 | int 2025-09-08T09:35:15,715 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,716 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,716 | ^~~~~ 2025-09-08T09:35:15,716 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T09:35:15,716 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,716 | ~~~~~~~~~~^ 2025-09-08T09:35:15,735 fastphase/fastphaseCython.c:15717:246: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T09:35:15,735 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,735 | ^~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,735 | | 2025-09-08T09:35:15,735 | PyObject * {aka struct _object *} 2025-09-08T09:35:15,735 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,735 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,735 | ^~~~ 2025-09-08T09:35:15,736 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T09:35:15,736 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T09:35:15,736 | ~~~~^ 2025-09-08T09:35:15,755 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T09:35:15,755 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T09:35:15,755 | ^~~~~~~~~~ 2025-09-08T09:35:15,755 fastphase/fastphaseCython.c:15717:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T09:35:15,755 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T09:35:15,755 | ^~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,755 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T09:35:15,755 213 | PyCode_New( 2025-09-08T09:35:15,755 | ^~~~~~~~~~ 2025-09-08T09:35:15,793 fastphase/fastphaseCython.c: In function ‘__Pyx_ParseOptionalKeywords’: 2025-09-08T09:35:15,819 fastphase/fastphaseCython.c:16241:22: error: implicit declaration of function ‘PyUnicode_GET_SIZE’; did you mean ‘PyDict_GET_SIZE’? [-Wimplicit-function-declaration] 2025-09-08T09:35:15,819 16241 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2025-09-08T09:35:15,819 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T09:35:15,820 | PyDict_GET_SIZE 2025-09-08T09:35:15,837 fastphase/fastphaseCython.c: At top level: 2025-09-08T09:35:15,856 fastphase/fastphaseCython.c:16295:12: fatal error: longintrepr.h: No such file or directory 2025-09-08T09:35:15,856 16295 | #include "longintrepr.h" 2025-09-08T09:35:15,856 | ^~~~~~~~~~~~~~~ 2025-09-08T09:35:15,856 compilation terminated. 2025-09-08T09:35:15,861 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T09:35:16,031 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T09:35:16,044 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T09:35:16,044 exec(compile('"'"''"'"''"'"' 2025-09-08T09:35:16,044 # This is -- a caller that pip uses to run setup.py 2025-09-08T09:35:16,044 # 2025-09-08T09:35:16,044 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T09:35:16,044 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T09:35:16,044 # - It provides a clear error message when setuptools is not installed. 2025-09-08T09:35:16,044 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T09:35:16,044 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T09:35:16,044 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T09:35:16,044 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T09:35:16,044 import os, sys, tokenize, traceback 2025-09-08T09:35:16,044 2025-09-08T09:35:16,044 try: 2025-09-08T09:35:16,044 import setuptools 2025-09-08T09:35:16,044 except ImportError: 2025-09-08T09:35:16,044 print( 2025-09-08T09:35:16,044 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T09:35:16,044 "the build environment with exception:", 2025-09-08T09:35:16,044 file=sys.stderr, 2025-09-08T09:35:16,044 ) 2025-09-08T09:35:16,044 traceback.print_exc() 2025-09-08T09:35:16,044 sys.exit(1) 2025-09-08T09:35:16,044 2025-09-08T09:35:16,044 __file__ = %r 2025-09-08T09:35:16,044 sys.argv[0] = __file__ 2025-09-08T09:35:16,044 2025-09-08T09:35:16,044 if os.path.exists(__file__): 2025-09-08T09:35:16,044 filename = __file__ 2025-09-08T09:35:16,044 with tokenize.open(__file__) as f: 2025-09-08T09:35:16,044 setup_py_code = f.read() 2025-09-08T09:35:16,044 else: 2025-09-08T09:35:16,044 filename = "" 2025-09-08T09:35:16,044 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T09:35:16,044 2025-09-08T09:35:16,044 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T09:35:16,044 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-mhwr0i0d/hapflk_eb10eb9d478540c08edbc03cc7e67acc/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-eburztwh[/] 2025-09-08T09:35:16,044 [bold magenta]cwd[/]: /tmp/pip-wheel-mhwr0i0d/hapflk_eb10eb9d478540c08edbc03cc7e67acc/ 2025-09-08T09:35:16,044 Building wheel for hapflk (setup.py): finished with status 'error' 2025-09-08T09:35:16,045 ERROR: Failed building wheel for hapflk 2025-09-08T09:35:16,046 Running setup.py clean for hapflk 2025-09-08T09:35:16,046 Running command python setup.py clean 2025-09-08T09:35:17,354 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T09:35:17,354 !! 2025-09-08T09:35:17,355 ******************************************************************************** 2025-09-08T09:35:17,355 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T09:35:17,355 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T09:35:17,355 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T09:35:17,355 ******************************************************************************** 2025-09-08T09:35:17,355 !! 2025-09-08T09:35:17,356 self._finalize_license_expression() 2025-09-08T09:35:17,431 running clean 2025-09-08T09:35:17,578 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T09:35:17,579 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T09:35:17,579 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T09:35:17,579 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T09:35:17,579 removing 'build' 2025-09-08T09:35:17,715 Failed to build hapflk 2025-09-08T09:35:17,715 ERROR: Failed to build one or more wheels 2025-09-08T09:35:17,716 Exception information: 2025-09-08T09:35:17,716 Traceback (most recent call last): 2025-09-08T09:35:17,716 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T09:35:17,716 status = _inner_run() 2025-09-08T09:35:17,716 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T09:35:17,716 return self.run(options, args) 2025-09-08T09:35:17,716 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T09:35:17,716 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T09:35:17,716 return func(self, options, args) 2025-09-08T09:35:17,716 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T09:35:17,716 raise CommandError("Failed to build one or more wheels") 2025-09-08T09:35:17,716 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T09:35:17,720 Removed build tracker: '/tmp/pip-build-tracker-oz_m0h8c'