2025-09-08T10:02:33,767 Created temporary directory: /tmp/pip-build-tracker-6uwwrcsu 2025-09-08T10:02:33,768 Initialized build tracking at /tmp/pip-build-tracker-6uwwrcsu 2025-09-08T10:02:33,768 Created build tracker: /tmp/pip-build-tracker-6uwwrcsu 2025-09-08T10:02:33,768 Entered build tracker: /tmp/pip-build-tracker-6uwwrcsu 2025-09-08T10:02:33,768 Created temporary directory: /tmp/pip-wheel-y90woydz 2025-09-08T10:02:33,771 Created temporary directory: /tmp/pip-ephem-wheel-cache-d27y62y6 2025-09-08T10:02:33,829 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T10:02:33,832 2 location(s) to search for versions of coldatoms: 2025-09-08T10:02:33,832 * https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:33,832 * https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:33,832 Fetching project page and analyzing links: https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:33,832 Getting page https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:33,834 Found index url https://pypi.org/simple/ 2025-09-08T10:02:33,905 Fetched page https://pypi.org/simple/coldatoms/ as application/vnd.pypi.simple.v1+json 2025-09-08T10:02:33,908 Found link https://files.pythonhosted.org/packages/6e/ee/c83784c33206d373d7b87ec969cd0b8e32dcbd21ac548f1810cd7abf629c/coldatoms-0.1.0.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.0 2025-09-08T10:02:33,908 Found link https://files.pythonhosted.org/packages/cd/c3/c9c0cc120aa319e2152fdb3d193e1387baed5bce4fbacbb5a2a519b9406c/coldatoms-0.1.1.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.1 2025-09-08T10:02:33,908 Found link https://files.pythonhosted.org/packages/94/55/3c8135820d703a1e32afab1982d0070b579fa871fe4293166486bb36b956/coldatoms-0.1.2.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.2 2025-09-08T10:02:33,909 Found link https://files.pythonhosted.org/packages/c6/c3/557af9dc2695327ed0f8406a952a8d1948431cef8f415b6932e60bfe3c4e/coldatoms-0.1.3.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.3 2025-09-08T10:02:33,909 Found link https://files.pythonhosted.org/packages/8b/7a/1c2e545f787ed5ce93d70a5dd265f5d0899839bd380d585e037ca524aa40/coldatoms-0.1.4.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.4 2025-09-08T10:02:33,909 Found link https://files.pythonhosted.org/packages/b8/9e/f542ddbc690763200bb0a52e5af5af93428bb7faff1b9c707dc73fa87781/coldatoms-0.1.6.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.6 2025-09-08T10:02:33,909 Found link https://files.pythonhosted.org/packages/d1/84/a27e557c377cb19aea611cb4b80ea14fbc1b83c6775e19b3d0f29c4c4ee4/coldatoms-0.1.7.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.7 2025-09-08T10:02:33,909 Found link https://files.pythonhosted.org/packages/f4/23/ec62c3374b3f16d59bc6b0d5b3f51c3f34b46898bc361ca17edc37287a7e/coldatoms-0.1.8.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.8 2025-09-08T10:02:33,910 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/29/71/f8c4bf3b04bcf913f75f9b76f741f1acdcdc563a89b321b0b1dd134edf3a/coldatoms-0.1.9-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,910 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/39/30/ea392cbdfc8b02b17059eaf94c8a00a7aecc62887506a62857547b4e358c/coldatoms-0.1.9-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,910 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/d2/85/95e68870be4b156ca46aa048ad09d1bed503240b2d8fee02ab7ce9a1320b/coldatoms-0.1.9-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,910 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/9e/6f/e11e8448b2150baa9151686daca1abef2107607a885be46fa56e7e10762b/coldatoms-0.1.9-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,910 Found link https://files.pythonhosted.org/packages/5f/56/341583ff7eb1f1514d52d51d8582ee04fce1d8554ce025551650521b35f0/coldatoms-0.1.9.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.9 2025-09-08T10:02:33,910 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/9e/32/a18552f0277c044a2016a9f3b099fc97f656c3d25eec40a26ef56eae702c/coldatoms-0.1.10-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,910 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/1a/d0/90dae1a72fa5a8a005a2fee2eb1c03a8edc3af212aa884df80337d0846d9/coldatoms-0.1.10-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,911 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/00/5f/da4c70bef45c15d7ba771f74993c8384a0c11c29a6c310a8a73c48ea2285/coldatoms-0.1.10-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,911 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/17/40/6f72a8d694ec75e17246e6e42c98ee6fef55563faba31c666ee9a5b01c66/coldatoms-0.1.10-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,911 Found link https://files.pythonhosted.org/packages/e0/45/02d16769676b4bf87bbcbf3225c5ecf02157f8a0e6ac26f9d4600d2017e7/coldatoms-0.1.10.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.10 2025-09-08T10:02:33,911 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/a4/14/4ce514a941f29f89c498e3d0462142dd6441880eea16bb621924232b326c/coldatoms-0.1.11-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,911 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/20/9a/4219cad64e9123f334682a5f97d0771b5746228e320fd8c89f7555105ada/coldatoms-0.1.11-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,911 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/bd/fe/a1c846b554de7d2ad0737fdd5ea206451600087f3868490029fd9b873b97/coldatoms-0.1.11-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,911 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/b2/d3/8e110f9386336d1d2bc8410c2d8ce6c7162b1cac218b7b8d3dd3ce76a656/coldatoms-0.1.11-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,911 Found link https://files.pythonhosted.org/packages/2c/29/5709828c594f7dc89beb6c7d564833c9be7418c815f4e19140cfe5444b7b/coldatoms-0.1.11.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.11 2025-09-08T10:02:33,912 Fetching project page and analyzing links: https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:33,912 Getting page https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:33,913 Found index url https://www.piwheels.org/simple/ 2025-09-08T10:02:34,015 Fetched page https://www.piwheels.org/simple/coldatoms/ as text/html 2025-09-08T10:02:34,016 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.4-py3-none-any.whl#sha256=08310a9bb88144db465095da11853bb50cf221c7ab80a0c7027c6bbda2410037 (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:34,016 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.3-py3-none-any.whl#sha256=2ef31f59bfbc45eab173740b7cb991070145daad1b2fa98285a41054c5ba802f (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:34,016 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.2-py3-none-any.whl#sha256=44a268f6341574e339c6f71425806ac4a51ed78d7aa9d98e66d5b3f9a5751111 (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:34,016 Skipping link: not a file: https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:34,016 Skipping link: not a file: https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:34,042 Given no hashes to check 1 links for project 'coldatoms': discarding no candidates 2025-09-08T10:02:34,043 Collecting coldatoms==0.1.7 2025-09-08T10:02:34,045 Created temporary directory: /tmp/pip-unpack-bhr1y00t 2025-09-08T10:02:34,184 Downloading coldatoms-0.1.7.tar.gz (93 kB) 2025-09-08T10:02:34,244 Added coldatoms==0.1.7 from https://files.pythonhosted.org/packages/d1/84/a27e557c377cb19aea611cb4b80ea14fbc1b83c6775e19b3d0f29c4c4ee4/coldatoms-0.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-6uwwrcsu' 2025-09-08T10:02:34,245 Running setup.py (path:/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py) egg_info for package coldatoms 2025-09-08T10:02:34,245 Created temporary directory: /tmp/pip-pip-egg-info-f_am4g1g 2025-09-08T10:02:34,245 Preparing metadata (setup.py): started 2025-09-08T10:02:34,246 Running command python setup.py egg_info 2025-09-08T10:02:34,927 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T10:02:34,927 !! 2025-09-08T10:02:34,927 ******************************************************************************** 2025-09-08T10:02:34,927 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T10:02:34,928 versions. Please use the underscore name 'description_file' instead. 2025-09-08T10:02:34,928 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T10:02:34,928 or your builds will no longer be supported. 2025-09-08T10:02:34,928 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T10:02:34,928 ******************************************************************************** 2025-09-08T10:02:34,928 !! 2025-09-08T10:02:34,929 opt = self._enforce_underscore(opt, section) 2025-09-08T10:02:34,957 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T10:02:34,957 !! 2025-09-08T10:02:34,958 ******************************************************************************** 2025-09-08T10:02:34,958 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T10:02:34,958 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T10:02:34,958 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T10:02:34,958 or your builds will no longer be supported. 2025-09-08T10:02:34,958 ******************************************************************************** 2025-09-08T10:02:34,958 !! 2025-09-08T10:02:34,959 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T10:02:35,454 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T10:02:35,454 !! 2025-09-08T10:02:35,454 ******************************************************************************** 2025-09-08T10:02:35,454 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T10:02:35,454 versions. Please use the underscore name 'description_file' instead. 2025-09-08T10:02:35,455 (Affected: coldatoms). 2025-09-08T10:02:35,455 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T10:02:35,455 or your builds will no longer be supported. 2025-09-08T10:02:35,455 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T10:02:35,455 ******************************************************************************** 2025-09-08T10:02:35,455 !! 2025-09-08T10:02:35,455 opt = self._enforce_underscore(opt, section) 2025-09-08T10:02:35,530 running egg_info 2025-09-08T10:02:35,604 creating /tmp/pip-pip-egg-info-f_am4g1g/coldatoms.egg-info 2025-09-08T10:02:35,605 writing /tmp/pip-pip-egg-info-f_am4g1g/coldatoms.egg-info/PKG-INFO 2025-09-08T10:02:35,606 writing dependency_links to /tmp/pip-pip-egg-info-f_am4g1g/coldatoms.egg-info/dependency_links.txt 2025-09-08T10:02:35,606 writing requirements to /tmp/pip-pip-egg-info-f_am4g1g/coldatoms.egg-info/requires.txt 2025-09-08T10:02:35,607 writing top-level names to /tmp/pip-pip-egg-info-f_am4g1g/coldatoms.egg-info/top_level.txt 2025-09-08T10:02:35,607 writing manifest file '/tmp/pip-pip-egg-info-f_am4g1g/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:35,830 reading manifest file '/tmp/pip-pip-egg-info-f_am4g1g/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:35,830 reading manifest template 'MANIFEST.in' 2025-09-08T10:02:35,836 warning: no files found matching '*.pxi' under directory 'src' 2025-09-08T10:02:35,840 adding license file 'LICENSE' 2025-09-08T10:02:35,843 writing manifest file '/tmp/pip-pip-egg-info-f_am4g1g/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:35,957 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T10:02:35,961 Source in /tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096 has version 0.1.7, which satisfies requirement coldatoms==0.1.7 from https://files.pythonhosted.org/packages/d1/84/a27e557c377cb19aea611cb4b80ea14fbc1b83c6775e19b3d0f29c4c4ee4/coldatoms-0.1.7.tar.gz 2025-09-08T10:02:35,961 Removed coldatoms==0.1.7 from https://files.pythonhosted.org/packages/d1/84/a27e557c377cb19aea611cb4b80ea14fbc1b83c6775e19b3d0f29c4c4ee4/coldatoms-0.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-6uwwrcsu' 2025-09-08T10:02:35,965 Created temporary directory: /tmp/pip-unpack-2w0lqruo 2025-09-08T10:02:35,965 Created temporary directory: /tmp/pip-unpack-4p4ok14s 2025-09-08T10:02:35,965 Building wheels for collected packages: coldatoms 2025-09-08T10:02:35,967 Created temporary directory: /tmp/pip-wheel-if39b68c 2025-09-08T10:02:35,967 DEPRECATION: Building 'coldatoms' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'coldatoms'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T10:02:35,969 Building wheel for coldatoms (setup.py): started 2025-09-08T10:02:35,969 Destination directory: /tmp/pip-wheel-if39b68c 2025-09-08T10:02:35,969 Running command python setup.py bdist_wheel 2025-09-08T10:02:37,336 Compiling src/coldatoms_lib/coldatoms_lib.pyx because it changed. 2025-09-08T10:02:37,336 [1/1] Cythonizing src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:38,801 Error compiling Cython file: 2025-09-08T10:02:38,801 ------------------------------------------------------------ 2025-09-08T10:02:38,801 ... 2025-09-08T10:02:38,802 import cython 2025-09-08T10:02:38,802 import numpy as np 2025-09-08T10:02:38,802 cimport numpy as np 2025-09-08T10:02:38,802 cimport ccoldatoms_lib 2025-09-08T10:02:38,802 ^ 2025-09-08T10:02:38,802 ------------------------------------------------------------ 2025-09-08T10:02:38,802 src/coldatoms_lib/coldatoms_lib.pyx:4:8: 'ccoldatoms_lib.pxd' not found 2025-09-08T10:02:38,833 Error compiling Cython file: 2025-09-08T10:02:38,834 ------------------------------------------------------------ 2025-09-08T10:02:38,834 ... 2025-09-08T10:02:38,834 bend_kick_update_vector(dt, omegaB, x, v) 2025-09-08T10:02:38,834 cdef class Rng(object): 2025-09-08T10:02:38,834 cdef ccoldatoms_lib.CARandCtx* _generator 2025-09-08T10:02:38,834 ^ 2025-09-08T10:02:38,834 ------------------------------------------------------------ 2025-09-08T10:02:38,835 src/coldatoms_lib/coldatoms_lib.pyx:114:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:38,895 Error compiling Cython file: 2025-09-08T10:02:38,895 ------------------------------------------------------------ 2025-09-08T10:02:38,895 ... 2025-09-08T10:02:38,895 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:38,895 cdef num_ptcls 2025-09-08T10:02:38,895 num_ptcls = positions.shape[0] 2025-09-08T10:02:38,896 ccoldatoms_lib.ca_coulomb_force( 2025-09-08T10:02:38,896 ^ 2025-09-08T10:02:38,896 ------------------------------------------------------------ 2025-09-08T10:02:38,896 src/coldatoms_lib/coldatoms_lib.pyx:19:18: cimported module has no attribute 'ca_coulomb_force' 2025-09-08T10:02:38,896 Error compiling Cython file: 2025-09-08T10:02:38,896 ------------------------------------------------------------ 2025-09-08T10:02:38,896 ... 2025-09-08T10:02:38,897 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:38,897 cdef num_ptcls 2025-09-08T10:02:38,897 num_ptcls = positions.shape[0] 2025-09-08T10:02:38,897 ccoldatoms_lib.ca_coulomb_force_per_particle_charge( 2025-09-08T10:02:38,897 ^ 2025-09-08T10:02:38,897 ------------------------------------------------------------ 2025-09-08T10:02:38,897 src/coldatoms_lib/coldatoms_lib.pyx:34:18: cimported module has no attribute 'ca_coulomb_force_per_particle_charge' 2025-09-08T10:02:38,899 Error compiling Cython file: 2025-09-08T10:02:38,899 ------------------------------------------------------------ 2025-09-08T10:02:38,899 ... 2025-09-08T10:02:38,899 assert(forces.shape[1] == 3) 2025-09-08T10:02:38,899 cdef num_ptcls 2025-09-08T10:02:38,899 num_ptcls = positions.shape[0] 2025-09-08T10:02:38,900 ccoldatoms_lib.ca_harmonic_trap_forces( 2025-09-08T10:02:38,900 ^ 2025-09-08T10:02:38,900 ------------------------------------------------------------ 2025-09-08T10:02:38,900 src/coldatoms_lib/coldatoms_lib.pyx:53:18: cimported module has no attribute 'ca_harmonic_trap_forces' 2025-09-08T10:02:38,902 Error compiling Cython file: 2025-09-08T10:02:38,902 ------------------------------------------------------------ 2025-09-08T10:02:38,902 ... 2025-09-08T10:02:38,902 assert(forces.shape[1] == 3) 2025-09-08T10:02:38,902 cdef num_ptcls 2025-09-08T10:02:38,902 num_ptcls = positions.shape[0] 2025-09-08T10:02:38,902 ccoldatoms_lib.ca_harmonic_trap_forces_per_particle_charge( 2025-09-08T10:02:38,902 ^ 2025-09-08T10:02:38,903 ------------------------------------------------------------ 2025-09-08T10:02:38,903 src/coldatoms_lib/coldatoms_lib.pyx:72:18: cimported module has no attribute 'ca_harmonic_trap_forces_per_particle_charge' 2025-09-08T10:02:38,903 Error compiling Cython file: 2025-09-08T10:02:38,903 ------------------------------------------------------------ 2025-09-08T10:02:38,903 ... 2025-09-08T10:02:38,903 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:38,903 cdef num_ptcls 2025-09-08T10:02:38,904 num_ptcls = x.shape[0] 2025-09-08T10:02:38,904 ccoldatoms_lib.ca_bend_kick_update_scalar( 2025-09-08T10:02:38,904 ^ 2025-09-08T10:02:38,904 ------------------------------------------------------------ 2025-09-08T10:02:38,904 src/coldatoms_lib/coldatoms_lib.pyx:86:18: cimported module has no attribute 'ca_bend_kick_update_scalar' 2025-09-08T10:02:38,904 Error compiling Cython file: 2025-09-08T10:02:38,904 ------------------------------------------------------------ 2025-09-08T10:02:38,904 ... 2025-09-08T10:02:38,905 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:38,905 cdef num_ptcls 2025-09-08T10:02:38,905 num_ptcls = x.shape[0] 2025-09-08T10:02:38,905 ccoldatoms_lib.ca_bend_kick_update_vector( 2025-09-08T10:02:38,905 ^ 2025-09-08T10:02:38,905 ------------------------------------------------------------ 2025-09-08T10:02:38,905 src/coldatoms_lib/coldatoms_lib.pyx:101:18: cimported module has no attribute 'ca_bend_kick_update_vector' 2025-09-08T10:02:38,906 Error compiling Cython file: 2025-09-08T10:02:38,906 ------------------------------------------------------------ 2025-09-08T10:02:38,906 ... 2025-09-08T10:02:38,906 def context(self): 2025-09-08T10:02:38,907 return self._generator 2025-09-08T10:02:38,907 def __cinit__(self, seed=None): 2025-09-08T10:02:38,907 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:38,907 ^ 2025-09-08T10:02:38,907 ------------------------------------------------------------ 2025-09-08T10:02:38,907 src/coldatoms_lib/coldatoms_lib.pyx:120:40: cimported module has no attribute 'ca_rand_create' 2025-09-08T10:02:38,907 Error compiling Cython file: 2025-09-08T10:02:38,907 ------------------------------------------------------------ 2025-09-08T10:02:38,908 ... 2025-09-08T10:02:38,908 return self._generator 2025-09-08T10:02:38,908 def __cinit__(self, seed=None): 2025-09-08T10:02:38,908 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:38,908 if seed is not None: 2025-09-08T10:02:38,908 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:38,908 ^ 2025-09-08T10:02:38,908 ------------------------------------------------------------ 2025-09-08T10:02:38,908 src/coldatoms_lib/coldatoms_lib.pyx:122:26: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:38,909 Error compiling Cython file: 2025-09-08T10:02:38,909 ------------------------------------------------------------ 2025-09-08T10:02:38,909 ... 2025-09-08T10:02:38,909 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:38,909 if seed is not None: 2025-09-08T10:02:38,909 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:38,909 def __dealloc__(self): 2025-09-08T10:02:38,909 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:38,909 ^ 2025-09-08T10:02:38,910 ------------------------------------------------------------ 2025-09-08T10:02:38,910 src/coldatoms_lib/coldatoms_lib.pyx:125:22: cimported module has no attribute 'ca_rand_destroy' 2025-09-08T10:02:38,910 Error compiling Cython file: 2025-09-08T10:02:38,910 ------------------------------------------------------------ 2025-09-08T10:02:38,910 ... 2025-09-08T10:02:38,910 def __dealloc__(self): 2025-09-08T10:02:38,910 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:38,910 def seed(self, unsigned int seed): 2025-09-08T10:02:38,911 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:38,911 ^ 2025-09-08T10:02:38,911 ------------------------------------------------------------ 2025-09-08T10:02:38,911 src/coldatoms_lib/coldatoms_lib.pyx:128:22: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:38,911 Error compiling Cython file: 2025-09-08T10:02:38,911 ------------------------------------------------------------ 2025-09-08T10:02:38,911 ... 2025-09-08T10:02:38,911 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:38,912 def fill(self, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:38,912 cdef int n = array.size 2025-09-08T10:02:38,912 cdef double *a = array.data 2025-09-08T10:02:38,912 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:38,912 ^ 2025-09-08T10:02:38,912 ------------------------------------------------------------ 2025-09-08T10:02:38,912 src/coldatoms_lib/coldatoms_lib.pyx:133:22: cimported module has no attribute 'ca_rand' 2025-09-08T10:02:38,912 Error compiling Cython file: 2025-09-08T10:02:38,913 ------------------------------------------------------------ 2025-09-08T10:02:38,913 ... 2025-09-08T10:02:38,913 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:38,913 def fill_gaussian(self, double mean, double std, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:38,913 cdef int n = array.size 2025-09-08T10:02:38,913 cdef double *a = array.data 2025-09-08T10:02:38,913 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:38,913 ^ 2025-09-08T10:02:38,913 ------------------------------------------------------------ 2025-09-08T10:02:38,914 src/coldatoms_lib/coldatoms_lib.pyx:138:22: cimported module has no attribute 'ca_rand_gaussian' 2025-09-08T10:02:38,914 Error compiling Cython file: 2025-09-08T10:02:38,914 ------------------------------------------------------------ 2025-09-08T10:02:38,914 ... 2025-09-08T10:02:38,914 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:38,914 def fill_poisson(self, double nbar, np.ndarray[int, mode="c"] array): 2025-09-08T10:02:38,914 cdef int n = array.size 2025-09-08T10:02:38,914 cdef int *a = array.data 2025-09-08T10:02:38,914 ccoldatoms_lib.ca_rand_poisson(self._generator, n, nbar, a) 2025-09-08T10:02:38,914 ^ 2025-09-08T10:02:38,915 ------------------------------------------------------------ 2025-09-08T10:02:38,915 src/coldatoms_lib/coldatoms_lib.pyx:143:22: cimported module has no attribute 'ca_rand_poisson' 2025-09-08T10:02:38,915 Error compiling Cython file: 2025-09-08T10:02:38,915 ------------------------------------------------------------ 2025-09-08T10:02:38,915 ... 2025-09-08T10:02:38,915 assert(delta.shape[0] == nbar.shape[0]) 2025-09-08T10:02:38,915 cdef num_ptcls 2025-09-08T10:02:38,915 num_ptcls = nbar.shape[0] 2025-09-08T10:02:38,916 ccoldatoms_lib.ca_compute_nbars(num_ptcls, dt, gamma, &s_of_r[0], &delta[0], &nbar[0]) 2025-09-08T10:02:38,916 ^ 2025-09-08T10:02:38,916 ------------------------------------------------------------ 2025-09-08T10:02:38,916 src/coldatoms_lib/coldatoms_lib.pyx:162:18: cimported module has no attribute 'ca_compute_nbars' 2025-09-08T10:02:38,916 Error compiling Cython file: 2025-09-08T10:02:38,916 ------------------------------------------------------------ 2025-09-08T10:02:38,916 ... 2025-09-08T10:02:38,916 assert(f.shape[1] == 3) 2025-09-08T10:02:38,917 assert(hbar_k.size == 3) 2025-09-08T10:02:38,917 cdef num_ptcls 2025-09-08T10:02:38,917 num_ptcls = nbars.shape[0] 2025-09-08T10:02:38,917 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:38,917 ^ 2025-09-08T10:02:38,917 ------------------------------------------------------------ 2025-09-08T10:02:38,917 src/coldatoms_lib/coldatoms_lib.pyx:175:18: cimported module has no attribute 'ca_add_radiation_pressure' 2025-09-08T10:02:38,917 Error compiling Cython file: 2025-09-08T10:02:38,918 ------------------------------------------------------------ 2025-09-08T10:02:38,918 ... 2025-09-08T10:02:38,918 cdef num_ptcls 2025-09-08T10:02:38,918 num_ptcls = nbars.shape[0] 2025-09-08T10:02:38,918 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:38,918 num_ptcls, 2025-09-08T10:02:38,918 rng_context, 2025-09-08T10:02:38,918 ^ 2025-09-08T10:02:38,918 ------------------------------------------------------------ 2025-09-08T10:02:38,918 src/coldatoms_lib/coldatoms_lib.pyx:177:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:38,942 Traceback (most recent call last): 2025-09-08T10:02:38,945 File "", line 2, in 2025-09-08T10:02:38,945 exec(compile(''' 2025-09-08T10:02:38,945 ~~~~^^^^^^^^^^^^ 2025-09-08T10:02:38,945 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:38,945 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:38,945 ...<32 lines>... 2025-09-08T10:02:38,945 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:38,946 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:38,946 ''' % ('/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py',), "", "exec")) 2025-09-08T10:02:38,946 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:38,946 File "", line 35, in 2025-09-08T10:02:38,946 File "/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py", line 106, in 2025-09-08T10:02:38,946 setup_package() 2025-09-08T10:02:38,946 ~~~~~~~~~~~~~^^ 2025-09-08T10:02:38,946 File "/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py", line 101, in setup_package 2025-09-08T10:02:38,946 metadata.update(get_package_info()) 2025-09-08T10:02:38,947 ~~~~~~~~~~~~~~~~^^ 2025-09-08T10:02:38,947 File "/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py", line 54, in get_package_info 2025-09-08T10:02:38,947 coldatoms_lib = cythonize([Extension( 2025-09-08T10:02:38,947 'coldatoms_lib.coldatoms_lib', 2025-09-08T10:02:38,947 ...<8 lines>... 2025-09-08T10:02:38,947 extra_link_args=extra_link_args 2025-09-08T10:02:38,947 )]) 2025-09-08T10:02:38,947 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T10:02:38,948 cythonize_one(*args) 2025-09-08T10:02:38,948 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T10:02:38,948 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T10:02:38,948 raise CompileError(None, pyx_file) 2025-09-08T10:02:38,948 Cython.Compiler.Errors.CompileError: src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:39,281 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T10:02:39,293 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T10:02:39,293 exec(compile('"'"''"'"''"'"' 2025-09-08T10:02:39,293 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:39,293 # 2025-09-08T10:02:39,293 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T10:02:39,293 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T10:02:39,293 # - It provides a clear error message when setuptools is not installed. 2025-09-08T10:02:39,293 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T10:02:39,293 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T10:02:39,293 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T10:02:39,293 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T10:02:39,293 import os, sys, tokenize, traceback 2025-09-08T10:02:39,293 2025-09-08T10:02:39,293 try: 2025-09-08T10:02:39,293 import setuptools 2025-09-08T10:02:39,293 except ImportError: 2025-09-08T10:02:39,293 print( 2025-09-08T10:02:39,293 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T10:02:39,293 "the build environment with exception:", 2025-09-08T10:02:39,293 file=sys.stderr, 2025-09-08T10:02:39,293 ) 2025-09-08T10:02:39,293 traceback.print_exc() 2025-09-08T10:02:39,293 sys.exit(1) 2025-09-08T10:02:39,293 2025-09-08T10:02:39,293 __file__ = %r 2025-09-08T10:02:39,293 sys.argv[0] = __file__ 2025-09-08T10:02:39,293 2025-09-08T10:02:39,293 if os.path.exists(__file__): 2025-09-08T10:02:39,293 filename = __file__ 2025-09-08T10:02:39,293 with tokenize.open(__file__) as f: 2025-09-08T10:02:39,293 setup_py_code = f.read() 2025-09-08T10:02:39,293 else: 2025-09-08T10:02:39,293 filename = "" 2025-09-08T10:02:39,293 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T10:02:39,293 2025-09-08T10:02:39,293 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:39,293 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-if39b68c[/] 2025-09-08T10:02:39,293 [bold magenta]cwd[/]: /tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/ 2025-09-08T10:02:39,293 Building wheel for coldatoms (setup.py): finished with status 'error' 2025-09-08T10:02:39,294 ERROR: Failed building wheel for coldatoms 2025-09-08T10:02:39,295 Running setup.py clean for coldatoms 2025-09-08T10:02:39,295 Running command python setup.py clean 2025-09-08T10:02:40,621 Compiling src/coldatoms_lib/coldatoms_lib.pyx because it changed. 2025-09-08T10:02:40,621 [1/1] Cythonizing src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:42,070 Error compiling Cython file: 2025-09-08T10:02:42,070 ------------------------------------------------------------ 2025-09-08T10:02:42,070 ... 2025-09-08T10:02:42,070 import cython 2025-09-08T10:02:42,071 import numpy as np 2025-09-08T10:02:42,071 cimport numpy as np 2025-09-08T10:02:42,071 cimport ccoldatoms_lib 2025-09-08T10:02:42,071 ^ 2025-09-08T10:02:42,071 ------------------------------------------------------------ 2025-09-08T10:02:42,071 src/coldatoms_lib/coldatoms_lib.pyx:4:8: 'ccoldatoms_lib.pxd' not found 2025-09-08T10:02:42,101 Error compiling Cython file: 2025-09-08T10:02:42,101 ------------------------------------------------------------ 2025-09-08T10:02:42,102 ... 2025-09-08T10:02:42,102 bend_kick_update_vector(dt, omegaB, x, v) 2025-09-08T10:02:42,102 cdef class Rng(object): 2025-09-08T10:02:42,102 cdef ccoldatoms_lib.CARandCtx* _generator 2025-09-08T10:02:42,102 ^ 2025-09-08T10:02:42,102 ------------------------------------------------------------ 2025-09-08T10:02:42,103 src/coldatoms_lib/coldatoms_lib.pyx:114:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:42,162 Error compiling Cython file: 2025-09-08T10:02:42,163 ------------------------------------------------------------ 2025-09-08T10:02:42,163 ... 2025-09-08T10:02:42,163 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:42,163 cdef num_ptcls 2025-09-08T10:02:42,163 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,163 ccoldatoms_lib.ca_coulomb_force( 2025-09-08T10:02:42,163 ^ 2025-09-08T10:02:42,163 ------------------------------------------------------------ 2025-09-08T10:02:42,164 src/coldatoms_lib/coldatoms_lib.pyx:19:18: cimported module has no attribute 'ca_coulomb_force' 2025-09-08T10:02:42,164 Error compiling Cython file: 2025-09-08T10:02:42,164 ------------------------------------------------------------ 2025-09-08T10:02:42,164 ... 2025-09-08T10:02:42,164 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:42,164 cdef num_ptcls 2025-09-08T10:02:42,164 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,165 ccoldatoms_lib.ca_coulomb_force_per_particle_charge( 2025-09-08T10:02:42,165 ^ 2025-09-08T10:02:42,165 ------------------------------------------------------------ 2025-09-08T10:02:42,165 src/coldatoms_lib/coldatoms_lib.pyx:34:18: cimported module has no attribute 'ca_coulomb_force_per_particle_charge' 2025-09-08T10:02:42,167 Error compiling Cython file: 2025-09-08T10:02:42,167 ------------------------------------------------------------ 2025-09-08T10:02:42,167 ... 2025-09-08T10:02:42,167 assert(forces.shape[1] == 3) 2025-09-08T10:02:42,167 cdef num_ptcls 2025-09-08T10:02:42,167 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,167 ccoldatoms_lib.ca_harmonic_trap_forces( 2025-09-08T10:02:42,167 ^ 2025-09-08T10:02:42,167 ------------------------------------------------------------ 2025-09-08T10:02:42,168 src/coldatoms_lib/coldatoms_lib.pyx:53:18: cimported module has no attribute 'ca_harmonic_trap_forces' 2025-09-08T10:02:42,169 Error compiling Cython file: 2025-09-08T10:02:42,169 ------------------------------------------------------------ 2025-09-08T10:02:42,169 ... 2025-09-08T10:02:42,169 assert(forces.shape[1] == 3) 2025-09-08T10:02:42,170 cdef num_ptcls 2025-09-08T10:02:42,170 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,170 ccoldatoms_lib.ca_harmonic_trap_forces_per_particle_charge( 2025-09-08T10:02:42,170 ^ 2025-09-08T10:02:42,170 ------------------------------------------------------------ 2025-09-08T10:02:42,170 src/coldatoms_lib/coldatoms_lib.pyx:72:18: cimported module has no attribute 'ca_harmonic_trap_forces_per_particle_charge' 2025-09-08T10:02:42,170 Error compiling Cython file: 2025-09-08T10:02:42,171 ------------------------------------------------------------ 2025-09-08T10:02:42,171 ... 2025-09-08T10:02:42,171 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:42,171 cdef num_ptcls 2025-09-08T10:02:42,171 num_ptcls = x.shape[0] 2025-09-08T10:02:42,171 ccoldatoms_lib.ca_bend_kick_update_scalar( 2025-09-08T10:02:42,171 ^ 2025-09-08T10:02:42,171 ------------------------------------------------------------ 2025-09-08T10:02:42,172 src/coldatoms_lib/coldatoms_lib.pyx:86:18: cimported module has no attribute 'ca_bend_kick_update_scalar' 2025-09-08T10:02:42,172 Error compiling Cython file: 2025-09-08T10:02:42,172 ------------------------------------------------------------ 2025-09-08T10:02:42,172 ... 2025-09-08T10:02:42,172 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:42,172 cdef num_ptcls 2025-09-08T10:02:42,172 num_ptcls = x.shape[0] 2025-09-08T10:02:42,172 ccoldatoms_lib.ca_bend_kick_update_vector( 2025-09-08T10:02:42,173 ^ 2025-09-08T10:02:42,173 ------------------------------------------------------------ 2025-09-08T10:02:42,173 src/coldatoms_lib/coldatoms_lib.pyx:101:18: cimported module has no attribute 'ca_bend_kick_update_vector' 2025-09-08T10:02:42,174 Error compiling Cython file: 2025-09-08T10:02:42,174 ------------------------------------------------------------ 2025-09-08T10:02:42,174 ... 2025-09-08T10:02:42,174 def context(self): 2025-09-08T10:02:42,174 return self._generator 2025-09-08T10:02:42,174 def __cinit__(self, seed=None): 2025-09-08T10:02:42,174 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:42,174 ^ 2025-09-08T10:02:42,175 ------------------------------------------------------------ 2025-09-08T10:02:42,175 src/coldatoms_lib/coldatoms_lib.pyx:120:40: cimported module has no attribute 'ca_rand_create' 2025-09-08T10:02:42,175 Error compiling Cython file: 2025-09-08T10:02:42,175 ------------------------------------------------------------ 2025-09-08T10:02:42,175 ... 2025-09-08T10:02:42,175 return self._generator 2025-09-08T10:02:42,175 def __cinit__(self, seed=None): 2025-09-08T10:02:42,175 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:42,176 if seed is not None: 2025-09-08T10:02:42,176 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,176 ^ 2025-09-08T10:02:42,176 ------------------------------------------------------------ 2025-09-08T10:02:42,176 src/coldatoms_lib/coldatoms_lib.pyx:122:26: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:42,176 Error compiling Cython file: 2025-09-08T10:02:42,176 ------------------------------------------------------------ 2025-09-08T10:02:42,176 ... 2025-09-08T10:02:42,176 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:42,177 if seed is not None: 2025-09-08T10:02:42,177 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,177 def __dealloc__(self): 2025-09-08T10:02:42,177 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:42,177 ^ 2025-09-08T10:02:42,177 ------------------------------------------------------------ 2025-09-08T10:02:42,177 src/coldatoms_lib/coldatoms_lib.pyx:125:22: cimported module has no attribute 'ca_rand_destroy' 2025-09-08T10:02:42,177 Error compiling Cython file: 2025-09-08T10:02:42,178 ------------------------------------------------------------ 2025-09-08T10:02:42,178 ... 2025-09-08T10:02:42,178 def __dealloc__(self): 2025-09-08T10:02:42,178 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:42,178 def seed(self, unsigned int seed): 2025-09-08T10:02:42,178 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,178 ^ 2025-09-08T10:02:42,178 ------------------------------------------------------------ 2025-09-08T10:02:42,179 src/coldatoms_lib/coldatoms_lib.pyx:128:22: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:42,179 Error compiling Cython file: 2025-09-08T10:02:42,179 ------------------------------------------------------------ 2025-09-08T10:02:42,179 ... 2025-09-08T10:02:42,179 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,179 def fill(self, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:42,179 cdef int n = array.size 2025-09-08T10:02:42,179 cdef double *a = array.data 2025-09-08T10:02:42,179 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:42,180 ^ 2025-09-08T10:02:42,180 ------------------------------------------------------------ 2025-09-08T10:02:42,180 src/coldatoms_lib/coldatoms_lib.pyx:133:22: cimported module has no attribute 'ca_rand' 2025-09-08T10:02:42,180 Error compiling Cython file: 2025-09-08T10:02:42,180 ------------------------------------------------------------ 2025-09-08T10:02:42,180 ... 2025-09-08T10:02:42,180 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:42,180 def fill_gaussian(self, double mean, double std, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:42,180 cdef int n = array.size 2025-09-08T10:02:42,181 cdef double *a = array.data 2025-09-08T10:02:42,181 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:42,181 ^ 2025-09-08T10:02:42,181 ------------------------------------------------------------ 2025-09-08T10:02:42,181 src/coldatoms_lib/coldatoms_lib.pyx:138:22: cimported module has no attribute 'ca_rand_gaussian' 2025-09-08T10:02:42,181 Error compiling Cython file: 2025-09-08T10:02:42,181 ------------------------------------------------------------ 2025-09-08T10:02:42,181 ... 2025-09-08T10:02:42,181 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:42,182 def fill_poisson(self, double nbar, np.ndarray[int, mode="c"] array): 2025-09-08T10:02:42,182 cdef int n = array.size 2025-09-08T10:02:42,182 cdef int *a = array.data 2025-09-08T10:02:42,182 ccoldatoms_lib.ca_rand_poisson(self._generator, n, nbar, a) 2025-09-08T10:02:42,182 ^ 2025-09-08T10:02:42,182 ------------------------------------------------------------ 2025-09-08T10:02:42,182 src/coldatoms_lib/coldatoms_lib.pyx:143:22: cimported module has no attribute 'ca_rand_poisson' 2025-09-08T10:02:42,183 Error compiling Cython file: 2025-09-08T10:02:42,183 ------------------------------------------------------------ 2025-09-08T10:02:42,183 ... 2025-09-08T10:02:42,183 assert(delta.shape[0] == nbar.shape[0]) 2025-09-08T10:02:42,183 cdef num_ptcls 2025-09-08T10:02:42,183 num_ptcls = nbar.shape[0] 2025-09-08T10:02:42,183 ccoldatoms_lib.ca_compute_nbars(num_ptcls, dt, gamma, &s_of_r[0], &delta[0], &nbar[0]) 2025-09-08T10:02:42,183 ^ 2025-09-08T10:02:42,183 ------------------------------------------------------------ 2025-09-08T10:02:42,184 src/coldatoms_lib/coldatoms_lib.pyx:162:18: cimported module has no attribute 'ca_compute_nbars' 2025-09-08T10:02:42,184 Error compiling Cython file: 2025-09-08T10:02:42,184 ------------------------------------------------------------ 2025-09-08T10:02:42,184 ... 2025-09-08T10:02:42,184 assert(f.shape[1] == 3) 2025-09-08T10:02:42,184 assert(hbar_k.size == 3) 2025-09-08T10:02:42,184 cdef num_ptcls 2025-09-08T10:02:42,184 num_ptcls = nbars.shape[0] 2025-09-08T10:02:42,184 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:42,185 ^ 2025-09-08T10:02:42,185 ------------------------------------------------------------ 2025-09-08T10:02:42,185 src/coldatoms_lib/coldatoms_lib.pyx:175:18: cimported module has no attribute 'ca_add_radiation_pressure' 2025-09-08T10:02:42,185 Error compiling Cython file: 2025-09-08T10:02:42,185 ------------------------------------------------------------ 2025-09-08T10:02:42,185 ... 2025-09-08T10:02:42,185 cdef num_ptcls 2025-09-08T10:02:42,185 num_ptcls = nbars.shape[0] 2025-09-08T10:02:42,185 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:42,186 num_ptcls, 2025-09-08T10:02:42,186 rng_context, 2025-09-08T10:02:42,186 ^ 2025-09-08T10:02:42,186 ------------------------------------------------------------ 2025-09-08T10:02:42,186 src/coldatoms_lib/coldatoms_lib.pyx:177:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:42,209 Traceback (most recent call last): 2025-09-08T10:02:42,212 File "", line 2, in 2025-09-08T10:02:42,212 exec(compile(''' 2025-09-08T10:02:42,212 ~~~~^^^^^^^^^^^^ 2025-09-08T10:02:42,212 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:42,212 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:42,212 ...<32 lines>... 2025-09-08T10:02:42,213 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:42,213 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:42,213 ''' % ('/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py',), "", "exec")) 2025-09-08T10:02:42,213 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:42,213 File "", line 35, in 2025-09-08T10:02:42,213 File "/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py", line 106, in 2025-09-08T10:02:42,213 setup_package() 2025-09-08T10:02:42,213 ~~~~~~~~~~~~~^^ 2025-09-08T10:02:42,214 File "/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py", line 101, in setup_package 2025-09-08T10:02:42,214 metadata.update(get_package_info()) 2025-09-08T10:02:42,214 ~~~~~~~~~~~~~~~~^^ 2025-09-08T10:02:42,214 File "/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py", line 54, in get_package_info 2025-09-08T10:02:42,214 coldatoms_lib = cythonize([Extension( 2025-09-08T10:02:42,214 'coldatoms_lib.coldatoms_lib', 2025-09-08T10:02:42,214 ...<8 lines>... 2025-09-08T10:02:42,214 extra_link_args=extra_link_args 2025-09-08T10:02:42,215 )]) 2025-09-08T10:02:42,215 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T10:02:42,215 cythonize_one(*args) 2025-09-08T10:02:42,215 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T10:02:42,215 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T10:02:42,215 raise CompileError(None, pyx_file) 2025-09-08T10:02:42,215 Cython.Compiler.Errors.CompileError: src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:42,546 ERROR: python setup.py clean exited with 1 2025-09-08T10:02:42,551 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T10:02:42,551 exec(compile('"'"''"'"''"'"' 2025-09-08T10:02:42,551 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:42,551 # 2025-09-08T10:02:42,551 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T10:02:42,551 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T10:02:42,551 # - It provides a clear error message when setuptools is not installed. 2025-09-08T10:02:42,551 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T10:02:42,551 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T10:02:42,551 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T10:02:42,551 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T10:02:42,551 import os, sys, tokenize, traceback 2025-09-08T10:02:42,551 2025-09-08T10:02:42,551 try: 2025-09-08T10:02:42,551 import setuptools 2025-09-08T10:02:42,551 except ImportError: 2025-09-08T10:02:42,551 print( 2025-09-08T10:02:42,551 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T10:02:42,551 "the build environment with exception:", 2025-09-08T10:02:42,551 file=sys.stderr, 2025-09-08T10:02:42,551 ) 2025-09-08T10:02:42,551 traceback.print_exc() 2025-09-08T10:02:42,551 sys.exit(1) 2025-09-08T10:02:42,551 2025-09-08T10:02:42,551 __file__ = %r 2025-09-08T10:02:42,551 sys.argv[0] = __file__ 2025-09-08T10:02:42,551 2025-09-08T10:02:42,551 if os.path.exists(__file__): 2025-09-08T10:02:42,551 filename = __file__ 2025-09-08T10:02:42,551 with tokenize.open(__file__) as f: 2025-09-08T10:02:42,551 setup_py_code = f.read() 2025-09-08T10:02:42,551 else: 2025-09-08T10:02:42,551 filename = "" 2025-09-08T10:02:42,551 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T10:02:42,551 2025-09-08T10:02:42,551 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:42,551 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096/setup.py'"'"',), "", "exec"))' clean --all[/] 2025-09-08T10:02:42,551 [bold magenta]cwd[/]: /tmp/pip-wheel-y90woydz/coldatoms_f9ace74c7e124b07a75309bc5cf4d096 2025-09-08T10:02:42,551 ERROR: Failed cleaning build dir for coldatoms 2025-09-08T10:02:42,552 Failed to build coldatoms 2025-09-08T10:02:42,553 ERROR: Failed to build one or more wheels 2025-09-08T10:02:42,554 Exception information: 2025-09-08T10:02:42,554 Traceback (most recent call last): 2025-09-08T10:02:42,554 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T10:02:42,554 status = _inner_run() 2025-09-08T10:02:42,554 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T10:02:42,554 return self.run(options, args) 2025-09-08T10:02:42,554 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T10:02:42,554 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T10:02:42,554 return func(self, options, args) 2025-09-08T10:02:42,554 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T10:02:42,554 raise CommandError("Failed to build one or more wheels") 2025-09-08T10:02:42,554 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T10:02:42,559 Removed build tracker: '/tmp/pip-build-tracker-6uwwrcsu'