2025-09-08T10:02:33,316 Created temporary directory: /tmp/pip-build-tracker-4iryxbz6 2025-09-08T10:02:33,317 Initialized build tracking at /tmp/pip-build-tracker-4iryxbz6 2025-09-08T10:02:33,317 Created build tracker: /tmp/pip-build-tracker-4iryxbz6 2025-09-08T10:02:33,317 Entered build tracker: /tmp/pip-build-tracker-4iryxbz6 2025-09-08T10:02:33,317 Created temporary directory: /tmp/pip-wheel-igeirmls 2025-09-08T10:02:33,321 Created temporary directory: /tmp/pip-ephem-wheel-cache-rtdy3b54 2025-09-08T10:02:33,385 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T10:02:33,387 2 location(s) to search for versions of coldatoms: 2025-09-08T10:02:33,387 * https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:33,387 * https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:33,387 Fetching project page and analyzing links: https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:33,388 Getting page https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:33,389 Found index url https://pypi.org/simple/ 2025-09-08T10:02:33,465 Fetched page https://pypi.org/simple/coldatoms/ as application/vnd.pypi.simple.v1+json 2025-09-08T10:02:33,468 Found link https://files.pythonhosted.org/packages/6e/ee/c83784c33206d373d7b87ec969cd0b8e32dcbd21ac548f1810cd7abf629c/coldatoms-0.1.0.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.0 2025-09-08T10:02:33,469 Found link https://files.pythonhosted.org/packages/cd/c3/c9c0cc120aa319e2152fdb3d193e1387baed5bce4fbacbb5a2a519b9406c/coldatoms-0.1.1.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.1 2025-09-08T10:02:33,469 Found link https://files.pythonhosted.org/packages/94/55/3c8135820d703a1e32afab1982d0070b579fa871fe4293166486bb36b956/coldatoms-0.1.2.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.2 2025-09-08T10:02:33,469 Found link https://files.pythonhosted.org/packages/c6/c3/557af9dc2695327ed0f8406a952a8d1948431cef8f415b6932e60bfe3c4e/coldatoms-0.1.3.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.3 2025-09-08T10:02:33,470 Found link https://files.pythonhosted.org/packages/8b/7a/1c2e545f787ed5ce93d70a5dd265f5d0899839bd380d585e037ca524aa40/coldatoms-0.1.4.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.4 2025-09-08T10:02:33,470 Found link https://files.pythonhosted.org/packages/b8/9e/f542ddbc690763200bb0a52e5af5af93428bb7faff1b9c707dc73fa87781/coldatoms-0.1.6.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.6 2025-09-08T10:02:33,470 Found link https://files.pythonhosted.org/packages/d1/84/a27e557c377cb19aea611cb4b80ea14fbc1b83c6775e19b3d0f29c4c4ee4/coldatoms-0.1.7.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.7 2025-09-08T10:02:33,470 Found link https://files.pythonhosted.org/packages/f4/23/ec62c3374b3f16d59bc6b0d5b3f51c3f34b46898bc361ca17edc37287a7e/coldatoms-0.1.8.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.8 2025-09-08T10:02:33,471 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/29/71/f8c4bf3b04bcf913f75f9b76f741f1acdcdc563a89b321b0b1dd134edf3a/coldatoms-0.1.9-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,471 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/39/30/ea392cbdfc8b02b17059eaf94c8a00a7aecc62887506a62857547b4e358c/coldatoms-0.1.9-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,471 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/d2/85/95e68870be4b156ca46aa048ad09d1bed503240b2d8fee02ab7ce9a1320b/coldatoms-0.1.9-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,471 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/9e/6f/e11e8448b2150baa9151686daca1abef2107607a885be46fa56e7e10762b/coldatoms-0.1.9-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,471 Found link https://files.pythonhosted.org/packages/5f/56/341583ff7eb1f1514d52d51d8582ee04fce1d8554ce025551650521b35f0/coldatoms-0.1.9.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.9 2025-09-08T10:02:33,472 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/9e/32/a18552f0277c044a2016a9f3b099fc97f656c3d25eec40a26ef56eae702c/coldatoms-0.1.10-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,472 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/1a/d0/90dae1a72fa5a8a005a2fee2eb1c03a8edc3af212aa884df80337d0846d9/coldatoms-0.1.10-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,472 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/00/5f/da4c70bef45c15d7ba771f74993c8384a0c11c29a6c310a8a73c48ea2285/coldatoms-0.1.10-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,472 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/17/40/6f72a8d694ec75e17246e6e42c98ee6fef55563faba31c666ee9a5b01c66/coldatoms-0.1.10-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,472 Found link https://files.pythonhosted.org/packages/e0/45/02d16769676b4bf87bbcbf3225c5ecf02157f8a0e6ac26f9d4600d2017e7/coldatoms-0.1.10.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.10 2025-09-08T10:02:33,473 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/a4/14/4ce514a941f29f89c498e3d0462142dd6441880eea16bb621924232b326c/coldatoms-0.1.11-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,473 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/20/9a/4219cad64e9123f334682a5f97d0771b5746228e320fd8c89f7555105ada/coldatoms-0.1.11-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,473 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/bd/fe/a1c846b554de7d2ad0737fdd5ea206451600087f3868490029fd9b873b97/coldatoms-0.1.11-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,473 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/b2/d3/8e110f9386336d1d2bc8410c2d8ce6c7162b1cac218b7b8d3dd3ce76a656/coldatoms-0.1.11-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:33,473 Found link https://files.pythonhosted.org/packages/2c/29/5709828c594f7dc89beb6c7d564833c9be7418c815f4e19140cfe5444b7b/coldatoms-0.1.11.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.11 2025-09-08T10:02:33,474 Fetching project page and analyzing links: https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:33,474 Getting page https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:33,475 Found index url https://www.piwheels.org/simple/ 2025-09-08T10:02:33,579 Fetched page https://www.piwheels.org/simple/coldatoms/ as text/html 2025-09-08T10:02:33,581 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.4-py3-none-any.whl#sha256=08310a9bb88144db465095da11853bb50cf221c7ab80a0c7027c6bbda2410037 (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:33,581 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.3-py3-none-any.whl#sha256=2ef31f59bfbc45eab173740b7cb991070145daad1b2fa98285a41054c5ba802f (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:33,581 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.2-py3-none-any.whl#sha256=44a268f6341574e339c6f71425806ac4a51ed78d7aa9d98e66d5b3f9a5751111 (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:33,581 Skipping link: not a file: https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:33,581 Skipping link: not a file: https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:33,607 Given no hashes to check 1 links for project 'coldatoms': discarding no candidates 2025-09-08T10:02:33,609 Collecting coldatoms==0.1.6 2025-09-08T10:02:33,610 Created temporary directory: /tmp/pip-unpack-hog6q3ee 2025-09-08T10:02:33,749 Downloading coldatoms-0.1.6.tar.gz (93 kB) 2025-09-08T10:02:33,816 Added coldatoms==0.1.6 from https://files.pythonhosted.org/packages/b8/9e/f542ddbc690763200bb0a52e5af5af93428bb7faff1b9c707dc73fa87781/coldatoms-0.1.6.tar.gz to build tracker '/tmp/pip-build-tracker-4iryxbz6' 2025-09-08T10:02:33,818 Running setup.py (path:/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py) egg_info for package coldatoms 2025-09-08T10:02:33,818 Created temporary directory: /tmp/pip-pip-egg-info-ry34w8_b 2025-09-08T10:02:33,818 Preparing metadata (setup.py): started 2025-09-08T10:02:33,819 Running command python setup.py egg_info 2025-09-08T10:02:34,527 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T10:02:34,527 !! 2025-09-08T10:02:34,528 ******************************************************************************** 2025-09-08T10:02:34,528 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T10:02:34,528 versions. Please use the underscore name 'description_file' instead. 2025-09-08T10:02:34,528 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T10:02:34,528 or your builds will no longer be supported. 2025-09-08T10:02:34,529 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T10:02:34,529 ******************************************************************************** 2025-09-08T10:02:34,529 !! 2025-09-08T10:02:34,529 opt = self._enforce_underscore(opt, section) 2025-09-08T10:02:34,560 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T10:02:34,560 !! 2025-09-08T10:02:34,560 ******************************************************************************** 2025-09-08T10:02:34,560 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T10:02:34,560 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T10:02:34,561 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T10:02:34,561 or your builds will no longer be supported. 2025-09-08T10:02:34,561 ******************************************************************************** 2025-09-08T10:02:34,561 !! 2025-09-08T10:02:34,561 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T10:02:35,180 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T10:02:35,181 !! 2025-09-08T10:02:35,181 ******************************************************************************** 2025-09-08T10:02:35,181 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T10:02:35,181 versions. Please use the underscore name 'description_file' instead. 2025-09-08T10:02:35,181 (Affected: coldatoms). 2025-09-08T10:02:35,181 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T10:02:35,181 or your builds will no longer be supported. 2025-09-08T10:02:35,182 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T10:02:35,182 ******************************************************************************** 2025-09-08T10:02:35,182 !! 2025-09-08T10:02:35,182 opt = self._enforce_underscore(opt, section) 2025-09-08T10:02:35,280 running egg_info 2025-09-08T10:02:35,377 creating /tmp/pip-pip-egg-info-ry34w8_b/coldatoms.egg-info 2025-09-08T10:02:35,377 writing /tmp/pip-pip-egg-info-ry34w8_b/coldatoms.egg-info/PKG-INFO 2025-09-08T10:02:35,379 writing dependency_links to /tmp/pip-pip-egg-info-ry34w8_b/coldatoms.egg-info/dependency_links.txt 2025-09-08T10:02:35,379 writing requirements to /tmp/pip-pip-egg-info-ry34w8_b/coldatoms.egg-info/requires.txt 2025-09-08T10:02:35,380 writing top-level names to /tmp/pip-pip-egg-info-ry34w8_b/coldatoms.egg-info/top_level.txt 2025-09-08T10:02:35,380 writing manifest file '/tmp/pip-pip-egg-info-ry34w8_b/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:35,674 reading manifest file '/tmp/pip-pip-egg-info-ry34w8_b/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:35,675 reading manifest template 'MANIFEST.in' 2025-09-08T10:02:35,681 warning: no files found matching '*.pxi' under directory 'src' 2025-09-08T10:02:35,687 adding license file 'LICENSE' 2025-09-08T10:02:35,690 writing manifest file '/tmp/pip-pip-egg-info-ry34w8_b/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:35,837 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T10:02:35,842 Source in /tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed has version 0.1.6, which satisfies requirement coldatoms==0.1.6 from https://files.pythonhosted.org/packages/b8/9e/f542ddbc690763200bb0a52e5af5af93428bb7faff1b9c707dc73fa87781/coldatoms-0.1.6.tar.gz 2025-09-08T10:02:35,843 Removed coldatoms==0.1.6 from https://files.pythonhosted.org/packages/b8/9e/f542ddbc690763200bb0a52e5af5af93428bb7faff1b9c707dc73fa87781/coldatoms-0.1.6.tar.gz from build tracker '/tmp/pip-build-tracker-4iryxbz6' 2025-09-08T10:02:35,847 Created temporary directory: /tmp/pip-unpack-su__zldk 2025-09-08T10:02:35,847 Created temporary directory: /tmp/pip-unpack-kb4jlzmu 2025-09-08T10:02:35,847 Building wheels for collected packages: coldatoms 2025-09-08T10:02:35,849 Created temporary directory: /tmp/pip-wheel-2_77puye 2025-09-08T10:02:35,849 DEPRECATION: Building 'coldatoms' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'coldatoms'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T10:02:35,850 Building wheel for coldatoms (setup.py): started 2025-09-08T10:02:35,851 Destination directory: /tmp/pip-wheel-2_77puye 2025-09-08T10:02:35,851 Running command python setup.py bdist_wheel 2025-09-08T10:02:37,512 Compiling src/coldatoms_lib/coldatoms_lib.pyx because it changed. 2025-09-08T10:02:37,512 [1/1] Cythonizing src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:39,227 Error compiling Cython file: 2025-09-08T10:02:39,227 ------------------------------------------------------------ 2025-09-08T10:02:39,227 ... 2025-09-08T10:02:39,227 import cython 2025-09-08T10:02:39,227 import numpy as np 2025-09-08T10:02:39,228 cimport numpy as np 2025-09-08T10:02:39,228 cimport ccoldatoms_lib 2025-09-08T10:02:39,228 ^ 2025-09-08T10:02:39,228 ------------------------------------------------------------ 2025-09-08T10:02:39,228 src/coldatoms_lib/coldatoms_lib.pyx:4:8: 'ccoldatoms_lib.pxd' not found 2025-09-08T10:02:39,261 Error compiling Cython file: 2025-09-08T10:02:39,261 ------------------------------------------------------------ 2025-09-08T10:02:39,261 ... 2025-09-08T10:02:39,261 bend_kick_update_vector(dt, omegaB, x, v) 2025-09-08T10:02:39,262 cdef class Rng(object): 2025-09-08T10:02:39,262 cdef ccoldatoms_lib.CARandCtx* _generator 2025-09-08T10:02:39,262 ^ 2025-09-08T10:02:39,262 ------------------------------------------------------------ 2025-09-08T10:02:39,262 src/coldatoms_lib/coldatoms_lib.pyx:114:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:39,331 Error compiling Cython file: 2025-09-08T10:02:39,331 ------------------------------------------------------------ 2025-09-08T10:02:39,331 ... 2025-09-08T10:02:39,331 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:39,331 cdef num_ptcls 2025-09-08T10:02:39,331 num_ptcls = positions.shape[0] 2025-09-08T10:02:39,332 ccoldatoms_lib.ca_coulomb_force( 2025-09-08T10:02:39,332 ^ 2025-09-08T10:02:39,332 ------------------------------------------------------------ 2025-09-08T10:02:39,332 src/coldatoms_lib/coldatoms_lib.pyx:19:18: cimported module has no attribute 'ca_coulomb_force' 2025-09-08T10:02:39,332 Error compiling Cython file: 2025-09-08T10:02:39,332 ------------------------------------------------------------ 2025-09-08T10:02:39,333 ... 2025-09-08T10:02:39,333 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:39,333 cdef num_ptcls 2025-09-08T10:02:39,333 num_ptcls = positions.shape[0] 2025-09-08T10:02:39,333 ccoldatoms_lib.ca_coulomb_force_per_particle_charge( 2025-09-08T10:02:39,333 ^ 2025-09-08T10:02:39,333 ------------------------------------------------------------ 2025-09-08T10:02:39,334 src/coldatoms_lib/coldatoms_lib.pyx:34:18: cimported module has no attribute 'ca_coulomb_force_per_particle_charge' 2025-09-08T10:02:39,336 Error compiling Cython file: 2025-09-08T10:02:39,336 ------------------------------------------------------------ 2025-09-08T10:02:39,336 ... 2025-09-08T10:02:39,336 assert(forces.shape[1] == 3) 2025-09-08T10:02:39,336 cdef num_ptcls 2025-09-08T10:02:39,336 num_ptcls = positions.shape[0] 2025-09-08T10:02:39,336 ccoldatoms_lib.ca_harmonic_trap_forces( 2025-09-08T10:02:39,336 ^ 2025-09-08T10:02:39,337 ------------------------------------------------------------ 2025-09-08T10:02:39,337 src/coldatoms_lib/coldatoms_lib.pyx:53:18: cimported module has no attribute 'ca_harmonic_trap_forces' 2025-09-08T10:02:39,339 Error compiling Cython file: 2025-09-08T10:02:39,339 ------------------------------------------------------------ 2025-09-08T10:02:39,339 ... 2025-09-08T10:02:39,339 assert(forces.shape[1] == 3) 2025-09-08T10:02:39,339 cdef num_ptcls 2025-09-08T10:02:39,339 num_ptcls = positions.shape[0] 2025-09-08T10:02:39,339 ccoldatoms_lib.ca_harmonic_trap_forces_per_particle_charge( 2025-09-08T10:02:39,340 ^ 2025-09-08T10:02:39,340 ------------------------------------------------------------ 2025-09-08T10:02:39,340 src/coldatoms_lib/coldatoms_lib.pyx:72:18: cimported module has no attribute 'ca_harmonic_trap_forces_per_particle_charge' 2025-09-08T10:02:39,340 Error compiling Cython file: 2025-09-08T10:02:39,340 ------------------------------------------------------------ 2025-09-08T10:02:39,340 ... 2025-09-08T10:02:39,341 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:39,341 cdef num_ptcls 2025-09-08T10:02:39,341 num_ptcls = x.shape[0] 2025-09-08T10:02:39,341 ccoldatoms_lib.ca_bend_kick_update_scalar( 2025-09-08T10:02:39,341 ^ 2025-09-08T10:02:39,341 ------------------------------------------------------------ 2025-09-08T10:02:39,341 src/coldatoms_lib/coldatoms_lib.pyx:86:18: cimported module has no attribute 'ca_bend_kick_update_scalar' 2025-09-08T10:02:39,342 Error compiling Cython file: 2025-09-08T10:02:39,342 ------------------------------------------------------------ 2025-09-08T10:02:39,342 ... 2025-09-08T10:02:39,342 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:39,342 cdef num_ptcls 2025-09-08T10:02:39,342 num_ptcls = x.shape[0] 2025-09-08T10:02:39,343 ccoldatoms_lib.ca_bend_kick_update_vector( 2025-09-08T10:02:39,343 ^ 2025-09-08T10:02:39,343 ------------------------------------------------------------ 2025-09-08T10:02:39,343 src/coldatoms_lib/coldatoms_lib.pyx:101:18: cimported module has no attribute 'ca_bend_kick_update_vector' 2025-09-08T10:02:39,344 Error compiling Cython file: 2025-09-08T10:02:39,344 ------------------------------------------------------------ 2025-09-08T10:02:39,344 ... 2025-09-08T10:02:39,345 def context(self): 2025-09-08T10:02:39,345 return self._generator 2025-09-08T10:02:39,345 def __cinit__(self, seed=None): 2025-09-08T10:02:39,345 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:39,345 ^ 2025-09-08T10:02:39,345 ------------------------------------------------------------ 2025-09-08T10:02:39,345 src/coldatoms_lib/coldatoms_lib.pyx:120:40: cimported module has no attribute 'ca_rand_create' 2025-09-08T10:02:39,346 Error compiling Cython file: 2025-09-08T10:02:39,346 ------------------------------------------------------------ 2025-09-08T10:02:39,346 ... 2025-09-08T10:02:39,346 return self._generator 2025-09-08T10:02:39,346 def __cinit__(self, seed=None): 2025-09-08T10:02:39,346 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:39,346 if seed is not None: 2025-09-08T10:02:39,347 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:39,347 ^ 2025-09-08T10:02:39,347 ------------------------------------------------------------ 2025-09-08T10:02:39,347 src/coldatoms_lib/coldatoms_lib.pyx:122:26: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:39,347 Error compiling Cython file: 2025-09-08T10:02:39,347 ------------------------------------------------------------ 2025-09-08T10:02:39,347 ... 2025-09-08T10:02:39,347 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:39,348 if seed is not None: 2025-09-08T10:02:39,348 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:39,348 def __dealloc__(self): 2025-09-08T10:02:39,348 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:39,348 ^ 2025-09-08T10:02:39,348 ------------------------------------------------------------ 2025-09-08T10:02:39,348 src/coldatoms_lib/coldatoms_lib.pyx:125:22: cimported module has no attribute 'ca_rand_destroy' 2025-09-08T10:02:39,349 Error compiling Cython file: 2025-09-08T10:02:39,349 ------------------------------------------------------------ 2025-09-08T10:02:39,349 ... 2025-09-08T10:02:39,349 def __dealloc__(self): 2025-09-08T10:02:39,349 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:39,349 def seed(self, unsigned int seed): 2025-09-08T10:02:39,350 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:39,350 ^ 2025-09-08T10:02:39,350 ------------------------------------------------------------ 2025-09-08T10:02:39,350 src/coldatoms_lib/coldatoms_lib.pyx:128:22: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:39,350 Error compiling Cython file: 2025-09-08T10:02:39,350 ------------------------------------------------------------ 2025-09-08T10:02:39,350 ... 2025-09-08T10:02:39,351 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:39,351 def fill(self, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:39,351 cdef int n = array.size 2025-09-08T10:02:39,351 cdef double *a = array.data 2025-09-08T10:02:39,351 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:39,351 ^ 2025-09-08T10:02:39,351 ------------------------------------------------------------ 2025-09-08T10:02:39,352 src/coldatoms_lib/coldatoms_lib.pyx:133:22: cimported module has no attribute 'ca_rand' 2025-09-08T10:02:39,352 Error compiling Cython file: 2025-09-08T10:02:39,352 ------------------------------------------------------------ 2025-09-08T10:02:39,352 ... 2025-09-08T10:02:39,352 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:39,352 def fill_gaussian(self, double mean, double std, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:39,352 cdef int n = array.size 2025-09-08T10:02:39,353 cdef double *a = array.data 2025-09-08T10:02:39,353 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:39,353 ^ 2025-09-08T10:02:39,353 ------------------------------------------------------------ 2025-09-08T10:02:39,353 src/coldatoms_lib/coldatoms_lib.pyx:138:22: cimported module has no attribute 'ca_rand_gaussian' 2025-09-08T10:02:39,353 Error compiling Cython file: 2025-09-08T10:02:39,353 ------------------------------------------------------------ 2025-09-08T10:02:39,353 ... 2025-09-08T10:02:39,354 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:39,354 def fill_poisson(self, double nbar, np.ndarray[int, mode="c"] array): 2025-09-08T10:02:39,354 cdef int n = array.size 2025-09-08T10:02:39,354 cdef int *a = array.data 2025-09-08T10:02:39,354 ccoldatoms_lib.ca_rand_poisson(self._generator, n, nbar, a) 2025-09-08T10:02:39,354 ^ 2025-09-08T10:02:39,354 ------------------------------------------------------------ 2025-09-08T10:02:39,355 src/coldatoms_lib/coldatoms_lib.pyx:143:22: cimported module has no attribute 'ca_rand_poisson' 2025-09-08T10:02:39,355 Error compiling Cython file: 2025-09-08T10:02:39,355 ------------------------------------------------------------ 2025-09-08T10:02:39,355 ... 2025-09-08T10:02:39,355 assert(delta.shape[0] == nbar.shape[0]) 2025-09-08T10:02:39,355 cdef num_ptcls 2025-09-08T10:02:39,355 num_ptcls = nbar.shape[0] 2025-09-08T10:02:39,356 ccoldatoms_lib.ca_compute_nbars(num_ptcls, dt, gamma, &s_of_r[0], &delta[0], &nbar[0]) 2025-09-08T10:02:39,356 ^ 2025-09-08T10:02:39,356 ------------------------------------------------------------ 2025-09-08T10:02:39,356 src/coldatoms_lib/coldatoms_lib.pyx:162:18: cimported module has no attribute 'ca_compute_nbars' 2025-09-08T10:02:39,356 Error compiling Cython file: 2025-09-08T10:02:39,356 ------------------------------------------------------------ 2025-09-08T10:02:39,357 ... 2025-09-08T10:02:39,357 assert(f.shape[1] == 3) 2025-09-08T10:02:39,357 assert(hbar_k.size == 3) 2025-09-08T10:02:39,357 cdef num_ptcls 2025-09-08T10:02:39,357 num_ptcls = nbars.shape[0] 2025-09-08T10:02:39,357 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:39,357 ^ 2025-09-08T10:02:39,357 ------------------------------------------------------------ 2025-09-08T10:02:39,358 src/coldatoms_lib/coldatoms_lib.pyx:175:18: cimported module has no attribute 'ca_add_radiation_pressure' 2025-09-08T10:02:39,358 Error compiling Cython file: 2025-09-08T10:02:39,358 ------------------------------------------------------------ 2025-09-08T10:02:39,358 ... 2025-09-08T10:02:39,358 cdef num_ptcls 2025-09-08T10:02:39,358 num_ptcls = nbars.shape[0] 2025-09-08T10:02:39,358 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:39,358 num_ptcls, 2025-09-08T10:02:39,359 rng_context, 2025-09-08T10:02:39,359 ^ 2025-09-08T10:02:39,359 ------------------------------------------------------------ 2025-09-08T10:02:39,359 src/coldatoms_lib/coldatoms_lib.pyx:177:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:39,385 Traceback (most recent call last): 2025-09-08T10:02:39,389 File "", line 2, in 2025-09-08T10:02:39,389 exec(compile(''' 2025-09-08T10:02:39,389 ~~~~^^^^^^^^^^^^ 2025-09-08T10:02:39,389 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:39,389 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:39,389 ...<32 lines>... 2025-09-08T10:02:39,390 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:39,390 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:39,390 ''' % ('/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py',), "", "exec")) 2025-09-08T10:02:39,390 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:39,390 File "", line 35, in 2025-09-08T10:02:39,391 File "/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py", line 106, in 2025-09-08T10:02:39,391 setup_package() 2025-09-08T10:02:39,391 ~~~~~~~~~~~~~^^ 2025-09-08T10:02:39,391 File "/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py", line 101, in setup_package 2025-09-08T10:02:39,391 metadata.update(get_package_info()) 2025-09-08T10:02:39,391 ~~~~~~~~~~~~~~~~^^ 2025-09-08T10:02:39,392 File "/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py", line 54, in get_package_info 2025-09-08T10:02:39,392 coldatoms_lib = cythonize([Extension( 2025-09-08T10:02:39,392 'coldatoms_lib.coldatoms_lib', 2025-09-08T10:02:39,392 ...<8 lines>... 2025-09-08T10:02:39,392 extra_link_args=extra_link_args 2025-09-08T10:02:39,393 )]) 2025-09-08T10:02:39,393 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T10:02:39,393 cythonize_one(*args) 2025-09-08T10:02:39,393 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T10:02:39,393 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T10:02:39,393 raise CompileError(None, pyx_file) 2025-09-08T10:02:39,394 Cython.Compiler.Errors.CompileError: src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:39,774 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T10:02:39,787 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T10:02:39,787 exec(compile('"'"''"'"''"'"' 2025-09-08T10:02:39,787 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:39,787 # 2025-09-08T10:02:39,787 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T10:02:39,787 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T10:02:39,787 # - It provides a clear error message when setuptools is not installed. 2025-09-08T10:02:39,787 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T10:02:39,787 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T10:02:39,787 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T10:02:39,787 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T10:02:39,787 import os, sys, tokenize, traceback 2025-09-08T10:02:39,787 2025-09-08T10:02:39,787 try: 2025-09-08T10:02:39,787 import setuptools 2025-09-08T10:02:39,787 except ImportError: 2025-09-08T10:02:39,787 print( 2025-09-08T10:02:39,787 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T10:02:39,787 "the build environment with exception:", 2025-09-08T10:02:39,787 file=sys.stderr, 2025-09-08T10:02:39,787 ) 2025-09-08T10:02:39,787 traceback.print_exc() 2025-09-08T10:02:39,787 sys.exit(1) 2025-09-08T10:02:39,787 2025-09-08T10:02:39,787 __file__ = %r 2025-09-08T10:02:39,787 sys.argv[0] = __file__ 2025-09-08T10:02:39,787 2025-09-08T10:02:39,787 if os.path.exists(__file__): 2025-09-08T10:02:39,787 filename = __file__ 2025-09-08T10:02:39,787 with tokenize.open(__file__) as f: 2025-09-08T10:02:39,787 setup_py_code = f.read() 2025-09-08T10:02:39,787 else: 2025-09-08T10:02:39,787 filename = "" 2025-09-08T10:02:39,787 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T10:02:39,787 2025-09-08T10:02:39,787 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:39,787 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-2_77puye[/] 2025-09-08T10:02:39,787 [bold magenta]cwd[/]: /tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/ 2025-09-08T10:02:39,788 Building wheel for coldatoms (setup.py): finished with status 'error' 2025-09-08T10:02:39,788 ERROR: Failed building wheel for coldatoms 2025-09-08T10:02:39,789 Running setup.py clean for coldatoms 2025-09-08T10:02:39,790 Running command python setup.py clean 2025-09-08T10:02:41,209 Compiling src/coldatoms_lib/coldatoms_lib.pyx because it changed. 2025-09-08T10:02:41,209 [1/1] Cythonizing src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:42,856 Error compiling Cython file: 2025-09-08T10:02:42,856 ------------------------------------------------------------ 2025-09-08T10:02:42,856 ... 2025-09-08T10:02:42,856 import cython 2025-09-08T10:02:42,856 import numpy as np 2025-09-08T10:02:42,856 cimport numpy as np 2025-09-08T10:02:42,856 cimport ccoldatoms_lib 2025-09-08T10:02:42,856 ^ 2025-09-08T10:02:42,857 ------------------------------------------------------------ 2025-09-08T10:02:42,857 src/coldatoms_lib/coldatoms_lib.pyx:4:8: 'ccoldatoms_lib.pxd' not found 2025-09-08T10:02:42,890 Error compiling Cython file: 2025-09-08T10:02:42,890 ------------------------------------------------------------ 2025-09-08T10:02:42,890 ... 2025-09-08T10:02:42,891 bend_kick_update_vector(dt, omegaB, x, v) 2025-09-08T10:02:42,891 cdef class Rng(object): 2025-09-08T10:02:42,891 cdef ccoldatoms_lib.CARandCtx* _generator 2025-09-08T10:02:42,891 ^ 2025-09-08T10:02:42,891 ------------------------------------------------------------ 2025-09-08T10:02:42,892 src/coldatoms_lib/coldatoms_lib.pyx:114:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:42,960 Error compiling Cython file: 2025-09-08T10:02:42,960 ------------------------------------------------------------ 2025-09-08T10:02:42,960 ... 2025-09-08T10:02:42,960 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:42,961 cdef num_ptcls 2025-09-08T10:02:42,961 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,961 ccoldatoms_lib.ca_coulomb_force( 2025-09-08T10:02:42,961 ^ 2025-09-08T10:02:42,961 ------------------------------------------------------------ 2025-09-08T10:02:42,961 src/coldatoms_lib/coldatoms_lib.pyx:19:18: cimported module has no attribute 'ca_coulomb_force' 2025-09-08T10:02:42,962 Error compiling Cython file: 2025-09-08T10:02:42,962 ------------------------------------------------------------ 2025-09-08T10:02:42,962 ... 2025-09-08T10:02:42,962 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:42,962 cdef num_ptcls 2025-09-08T10:02:42,963 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,963 ccoldatoms_lib.ca_coulomb_force_per_particle_charge( 2025-09-08T10:02:42,963 ^ 2025-09-08T10:02:42,963 ------------------------------------------------------------ 2025-09-08T10:02:42,963 src/coldatoms_lib/coldatoms_lib.pyx:34:18: cimported module has no attribute 'ca_coulomb_force_per_particle_charge' 2025-09-08T10:02:42,965 Error compiling Cython file: 2025-09-08T10:02:42,965 ------------------------------------------------------------ 2025-09-08T10:02:42,966 ... 2025-09-08T10:02:42,966 assert(forces.shape[1] == 3) 2025-09-08T10:02:42,966 cdef num_ptcls 2025-09-08T10:02:42,966 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,966 ccoldatoms_lib.ca_harmonic_trap_forces( 2025-09-08T10:02:42,966 ^ 2025-09-08T10:02:42,966 ------------------------------------------------------------ 2025-09-08T10:02:42,967 src/coldatoms_lib/coldatoms_lib.pyx:53:18: cimported module has no attribute 'ca_harmonic_trap_forces' 2025-09-08T10:02:42,969 Error compiling Cython file: 2025-09-08T10:02:42,969 ------------------------------------------------------------ 2025-09-08T10:02:42,969 ... 2025-09-08T10:02:42,969 assert(forces.shape[1] == 3) 2025-09-08T10:02:42,969 cdef num_ptcls 2025-09-08T10:02:42,969 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,969 ccoldatoms_lib.ca_harmonic_trap_forces_per_particle_charge( 2025-09-08T10:02:42,969 ^ 2025-09-08T10:02:42,970 ------------------------------------------------------------ 2025-09-08T10:02:42,970 src/coldatoms_lib/coldatoms_lib.pyx:72:18: cimported module has no attribute 'ca_harmonic_trap_forces_per_particle_charge' 2025-09-08T10:02:42,970 Error compiling Cython file: 2025-09-08T10:02:42,970 ------------------------------------------------------------ 2025-09-08T10:02:42,971 ... 2025-09-08T10:02:42,971 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:42,971 cdef num_ptcls 2025-09-08T10:02:42,971 num_ptcls = x.shape[0] 2025-09-08T10:02:42,971 ccoldatoms_lib.ca_bend_kick_update_scalar( 2025-09-08T10:02:42,971 ^ 2025-09-08T10:02:42,971 ------------------------------------------------------------ 2025-09-08T10:02:42,972 src/coldatoms_lib/coldatoms_lib.pyx:86:18: cimported module has no attribute 'ca_bend_kick_update_scalar' 2025-09-08T10:02:42,972 Error compiling Cython file: 2025-09-08T10:02:42,972 ------------------------------------------------------------ 2025-09-08T10:02:42,972 ... 2025-09-08T10:02:42,972 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:42,972 cdef num_ptcls 2025-09-08T10:02:42,973 num_ptcls = x.shape[0] 2025-09-08T10:02:42,973 ccoldatoms_lib.ca_bend_kick_update_vector( 2025-09-08T10:02:42,973 ^ 2025-09-08T10:02:42,973 ------------------------------------------------------------ 2025-09-08T10:02:42,973 src/coldatoms_lib/coldatoms_lib.pyx:101:18: cimported module has no attribute 'ca_bend_kick_update_vector' 2025-09-08T10:02:42,974 Error compiling Cython file: 2025-09-08T10:02:42,974 ------------------------------------------------------------ 2025-09-08T10:02:42,974 ... 2025-09-08T10:02:42,975 def context(self): 2025-09-08T10:02:42,975 return self._generator 2025-09-08T10:02:42,975 def __cinit__(self, seed=None): 2025-09-08T10:02:42,975 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:42,975 ^ 2025-09-08T10:02:42,975 ------------------------------------------------------------ 2025-09-08T10:02:42,976 src/coldatoms_lib/coldatoms_lib.pyx:120:40: cimported module has no attribute 'ca_rand_create' 2025-09-08T10:02:42,976 Error compiling Cython file: 2025-09-08T10:02:42,976 ------------------------------------------------------------ 2025-09-08T10:02:42,976 ... 2025-09-08T10:02:42,976 return self._generator 2025-09-08T10:02:42,976 def __cinit__(self, seed=None): 2025-09-08T10:02:42,976 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:42,977 if seed is not None: 2025-09-08T10:02:42,977 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,977 ^ 2025-09-08T10:02:42,977 ------------------------------------------------------------ 2025-09-08T10:02:42,977 src/coldatoms_lib/coldatoms_lib.pyx:122:26: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:42,977 Error compiling Cython file: 2025-09-08T10:02:42,977 ------------------------------------------------------------ 2025-09-08T10:02:42,978 ... 2025-09-08T10:02:42,978 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:42,978 if seed is not None: 2025-09-08T10:02:42,978 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,978 def __dealloc__(self): 2025-09-08T10:02:42,978 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:42,978 ^ 2025-09-08T10:02:42,978 ------------------------------------------------------------ 2025-09-08T10:02:42,979 src/coldatoms_lib/coldatoms_lib.pyx:125:22: cimported module has no attribute 'ca_rand_destroy' 2025-09-08T10:02:42,979 Error compiling Cython file: 2025-09-08T10:02:42,979 ------------------------------------------------------------ 2025-09-08T10:02:42,979 ... 2025-09-08T10:02:42,979 def __dealloc__(self): 2025-09-08T10:02:42,979 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:42,980 def seed(self, unsigned int seed): 2025-09-08T10:02:42,980 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,980 ^ 2025-09-08T10:02:42,980 ------------------------------------------------------------ 2025-09-08T10:02:42,980 src/coldatoms_lib/coldatoms_lib.pyx:128:22: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:42,980 Error compiling Cython file: 2025-09-08T10:02:42,980 ------------------------------------------------------------ 2025-09-08T10:02:42,981 ... 2025-09-08T10:02:42,981 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,981 def fill(self, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:42,981 cdef int n = array.size 2025-09-08T10:02:42,981 cdef double *a = array.data 2025-09-08T10:02:42,981 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:42,981 ^ 2025-09-08T10:02:42,981 ------------------------------------------------------------ 2025-09-08T10:02:42,982 src/coldatoms_lib/coldatoms_lib.pyx:133:22: cimported module has no attribute 'ca_rand' 2025-09-08T10:02:42,982 Error compiling Cython file: 2025-09-08T10:02:42,982 ------------------------------------------------------------ 2025-09-08T10:02:42,982 ... 2025-09-08T10:02:42,982 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:42,982 def fill_gaussian(self, double mean, double std, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:42,983 cdef int n = array.size 2025-09-08T10:02:42,983 cdef double *a = array.data 2025-09-08T10:02:42,983 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:42,983 ^ 2025-09-08T10:02:42,983 ------------------------------------------------------------ 2025-09-08T10:02:42,983 src/coldatoms_lib/coldatoms_lib.pyx:138:22: cimported module has no attribute 'ca_rand_gaussian' 2025-09-08T10:02:42,983 Error compiling Cython file: 2025-09-08T10:02:42,984 ------------------------------------------------------------ 2025-09-08T10:02:42,984 ... 2025-09-08T10:02:42,984 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:42,984 def fill_poisson(self, double nbar, np.ndarray[int, mode="c"] array): 2025-09-08T10:02:42,984 cdef int n = array.size 2025-09-08T10:02:42,984 cdef int *a = array.data 2025-09-08T10:02:42,984 ccoldatoms_lib.ca_rand_poisson(self._generator, n, nbar, a) 2025-09-08T10:02:42,984 ^ 2025-09-08T10:02:42,984 ------------------------------------------------------------ 2025-09-08T10:02:42,985 src/coldatoms_lib/coldatoms_lib.pyx:143:22: cimported module has no attribute 'ca_rand_poisson' 2025-09-08T10:02:42,985 Error compiling Cython file: 2025-09-08T10:02:42,985 ------------------------------------------------------------ 2025-09-08T10:02:42,985 ... 2025-09-08T10:02:42,985 assert(delta.shape[0] == nbar.shape[0]) 2025-09-08T10:02:42,985 cdef num_ptcls 2025-09-08T10:02:42,986 num_ptcls = nbar.shape[0] 2025-09-08T10:02:42,986 ccoldatoms_lib.ca_compute_nbars(num_ptcls, dt, gamma, &s_of_r[0], &delta[0], &nbar[0]) 2025-09-08T10:02:42,986 ^ 2025-09-08T10:02:42,986 ------------------------------------------------------------ 2025-09-08T10:02:42,986 src/coldatoms_lib/coldatoms_lib.pyx:162:18: cimported module has no attribute 'ca_compute_nbars' 2025-09-08T10:02:42,987 Error compiling Cython file: 2025-09-08T10:02:42,987 ------------------------------------------------------------ 2025-09-08T10:02:42,987 ... 2025-09-08T10:02:42,987 assert(f.shape[1] == 3) 2025-09-08T10:02:42,987 assert(hbar_k.size == 3) 2025-09-08T10:02:42,987 cdef num_ptcls 2025-09-08T10:02:42,987 num_ptcls = nbars.shape[0] 2025-09-08T10:02:42,987 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:42,987 ^ 2025-09-08T10:02:42,988 ------------------------------------------------------------ 2025-09-08T10:02:42,988 src/coldatoms_lib/coldatoms_lib.pyx:175:18: cimported module has no attribute 'ca_add_radiation_pressure' 2025-09-08T10:02:42,988 Error compiling Cython file: 2025-09-08T10:02:42,988 ------------------------------------------------------------ 2025-09-08T10:02:42,988 ... 2025-09-08T10:02:42,988 cdef num_ptcls 2025-09-08T10:02:42,988 num_ptcls = nbars.shape[0] 2025-09-08T10:02:42,989 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:42,989 num_ptcls, 2025-09-08T10:02:42,989 rng_context, 2025-09-08T10:02:42,989 ^ 2025-09-08T10:02:42,989 ------------------------------------------------------------ 2025-09-08T10:02:42,989 src/coldatoms_lib/coldatoms_lib.pyx:177:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:43,015 Traceback (most recent call last): 2025-09-08T10:02:43,019 File "", line 2, in 2025-09-08T10:02:43,019 exec(compile(''' 2025-09-08T10:02:43,019 ~~~~^^^^^^^^^^^^ 2025-09-08T10:02:43,020 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:43,020 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:43,020 ...<32 lines>... 2025-09-08T10:02:43,020 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:43,020 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:43,020 ''' % ('/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py',), "", "exec")) 2025-09-08T10:02:43,021 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:43,021 File "", line 35, in 2025-09-08T10:02:43,021 File "/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py", line 106, in 2025-09-08T10:02:43,021 setup_package() 2025-09-08T10:02:43,021 ~~~~~~~~~~~~~^^ 2025-09-08T10:02:43,022 File "/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py", line 101, in setup_package 2025-09-08T10:02:43,022 metadata.update(get_package_info()) 2025-09-08T10:02:43,022 ~~~~~~~~~~~~~~~~^^ 2025-09-08T10:02:43,022 File "/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py", line 54, in get_package_info 2025-09-08T10:02:43,022 coldatoms_lib = cythonize([Extension( 2025-09-08T10:02:43,023 'coldatoms_lib.coldatoms_lib', 2025-09-08T10:02:43,023 ...<8 lines>... 2025-09-08T10:02:43,023 extra_link_args=extra_link_args 2025-09-08T10:02:43,023 )]) 2025-09-08T10:02:43,023 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T10:02:43,024 cythonize_one(*args) 2025-09-08T10:02:43,024 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T10:02:43,024 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T10:02:43,024 raise CompileError(None, pyx_file) 2025-09-08T10:02:43,024 Cython.Compiler.Errors.CompileError: src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:43,395 ERROR: python setup.py clean exited with 1 2025-09-08T10:02:43,401 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T10:02:43,401 exec(compile('"'"''"'"''"'"' 2025-09-08T10:02:43,401 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:43,401 # 2025-09-08T10:02:43,401 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T10:02:43,401 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T10:02:43,401 # - It provides a clear error message when setuptools is not installed. 2025-09-08T10:02:43,401 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T10:02:43,401 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T10:02:43,401 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T10:02:43,401 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T10:02:43,401 import os, sys, tokenize, traceback 2025-09-08T10:02:43,401 2025-09-08T10:02:43,401 try: 2025-09-08T10:02:43,401 import setuptools 2025-09-08T10:02:43,401 except ImportError: 2025-09-08T10:02:43,401 print( 2025-09-08T10:02:43,401 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T10:02:43,401 "the build environment with exception:", 2025-09-08T10:02:43,401 file=sys.stderr, 2025-09-08T10:02:43,401 ) 2025-09-08T10:02:43,401 traceback.print_exc() 2025-09-08T10:02:43,401 sys.exit(1) 2025-09-08T10:02:43,401 2025-09-08T10:02:43,401 __file__ = %r 2025-09-08T10:02:43,401 sys.argv[0] = __file__ 2025-09-08T10:02:43,401 2025-09-08T10:02:43,401 if os.path.exists(__file__): 2025-09-08T10:02:43,401 filename = __file__ 2025-09-08T10:02:43,401 with tokenize.open(__file__) as f: 2025-09-08T10:02:43,401 setup_py_code = f.read() 2025-09-08T10:02:43,401 else: 2025-09-08T10:02:43,401 filename = "" 2025-09-08T10:02:43,401 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T10:02:43,401 2025-09-08T10:02:43,401 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:43,401 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed/setup.py'"'"',), "", "exec"))' clean --all[/] 2025-09-08T10:02:43,401 [bold magenta]cwd[/]: /tmp/pip-wheel-igeirmls/coldatoms_62b0882fe9ec4c4da2ddd9c1c20155ed 2025-09-08T10:02:43,401 ERROR: Failed cleaning build dir for coldatoms 2025-09-08T10:02:43,402 Failed to build coldatoms 2025-09-08T10:02:43,403 ERROR: Failed to build one or more wheels 2025-09-08T10:02:43,404 Exception information: 2025-09-08T10:02:43,404 Traceback (most recent call last): 2025-09-08T10:02:43,404 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T10:02:43,404 status = _inner_run() 2025-09-08T10:02:43,404 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T10:02:43,404 return self.run(options, args) 2025-09-08T10:02:43,404 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T10:02:43,404 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T10:02:43,404 return func(self, options, args) 2025-09-08T10:02:43,404 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T10:02:43,404 raise CommandError("Failed to build one or more wheels") 2025-09-08T10:02:43,404 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T10:02:43,409 Removed build tracker: '/tmp/pip-build-tracker-4iryxbz6'