2025-09-08T10:02:37,008 Created temporary directory: /tmp/pip-build-tracker-skz_xnd_ 2025-09-08T10:02:37,009 Initialized build tracking at /tmp/pip-build-tracker-skz_xnd_ 2025-09-08T10:02:37,009 Created build tracker: /tmp/pip-build-tracker-skz_xnd_ 2025-09-08T10:02:37,009 Entered build tracker: /tmp/pip-build-tracker-skz_xnd_ 2025-09-08T10:02:37,009 Created temporary directory: /tmp/pip-wheel-o5dxv5pt 2025-09-08T10:02:37,012 Created temporary directory: /tmp/pip-ephem-wheel-cache-06knhums 2025-09-08T10:02:37,072 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T10:02:37,075 2 location(s) to search for versions of coldatoms: 2025-09-08T10:02:37,075 * https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:37,075 * https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:37,075 Fetching project page and analyzing links: https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:37,075 Getting page https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:37,077 Found index url https://pypi.org/simple/ 2025-09-08T10:02:37,147 Fetched page https://pypi.org/simple/coldatoms/ as application/vnd.pypi.simple.v1+json 2025-09-08T10:02:37,151 Found link https://files.pythonhosted.org/packages/6e/ee/c83784c33206d373d7b87ec969cd0b8e32dcbd21ac548f1810cd7abf629c/coldatoms-0.1.0.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.0 2025-09-08T10:02:37,151 Found link https://files.pythonhosted.org/packages/cd/c3/c9c0cc120aa319e2152fdb3d193e1387baed5bce4fbacbb5a2a519b9406c/coldatoms-0.1.1.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.1 2025-09-08T10:02:37,151 Found link https://files.pythonhosted.org/packages/94/55/3c8135820d703a1e32afab1982d0070b579fa871fe4293166486bb36b956/coldatoms-0.1.2.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.2 2025-09-08T10:02:37,151 Found link https://files.pythonhosted.org/packages/c6/c3/557af9dc2695327ed0f8406a952a8d1948431cef8f415b6932e60bfe3c4e/coldatoms-0.1.3.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.3 2025-09-08T10:02:37,151 Found link https://files.pythonhosted.org/packages/8b/7a/1c2e545f787ed5ce93d70a5dd265f5d0899839bd380d585e037ca524aa40/coldatoms-0.1.4.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.4 2025-09-08T10:02:37,152 Found link https://files.pythonhosted.org/packages/b8/9e/f542ddbc690763200bb0a52e5af5af93428bb7faff1b9c707dc73fa87781/coldatoms-0.1.6.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.6 2025-09-08T10:02:37,152 Found link https://files.pythonhosted.org/packages/d1/84/a27e557c377cb19aea611cb4b80ea14fbc1b83c6775e19b3d0f29c4c4ee4/coldatoms-0.1.7.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.7 2025-09-08T10:02:37,152 Found link https://files.pythonhosted.org/packages/f4/23/ec62c3374b3f16d59bc6b0d5b3f51c3f34b46898bc361ca17edc37287a7e/coldatoms-0.1.8.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.8 2025-09-08T10:02:37,152 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/29/71/f8c4bf3b04bcf913f75f9b76f741f1acdcdc563a89b321b0b1dd134edf3a/coldatoms-0.1.9-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,152 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/39/30/ea392cbdfc8b02b17059eaf94c8a00a7aecc62887506a62857547b4e358c/coldatoms-0.1.9-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,152 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/d2/85/95e68870be4b156ca46aa048ad09d1bed503240b2d8fee02ab7ce9a1320b/coldatoms-0.1.9-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,153 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/9e/6f/e11e8448b2150baa9151686daca1abef2107607a885be46fa56e7e10762b/coldatoms-0.1.9-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,153 Found link https://files.pythonhosted.org/packages/5f/56/341583ff7eb1f1514d52d51d8582ee04fce1d8554ce025551650521b35f0/coldatoms-0.1.9.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.9 2025-09-08T10:02:37,153 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/9e/32/a18552f0277c044a2016a9f3b099fc97f656c3d25eec40a26ef56eae702c/coldatoms-0.1.10-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,153 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/1a/d0/90dae1a72fa5a8a005a2fee2eb1c03a8edc3af212aa884df80337d0846d9/coldatoms-0.1.10-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,153 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/00/5f/da4c70bef45c15d7ba771f74993c8384a0c11c29a6c310a8a73c48ea2285/coldatoms-0.1.10-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,153 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/17/40/6f72a8d694ec75e17246e6e42c98ee6fef55563faba31c666ee9a5b01c66/coldatoms-0.1.10-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,153 Found link https://files.pythonhosted.org/packages/e0/45/02d16769676b4bf87bbcbf3225c5ecf02157f8a0e6ac26f9d4600d2017e7/coldatoms-0.1.10.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.10 2025-09-08T10:02:37,154 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/a4/14/4ce514a941f29f89c498e3d0462142dd6441880eea16bb621924232b326c/coldatoms-0.1.11-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,154 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/20/9a/4219cad64e9123f334682a5f97d0771b5746228e320fd8c89f7555105ada/coldatoms-0.1.11-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,154 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/bd/fe/a1c846b554de7d2ad0737fdd5ea206451600087f3868490029fd9b873b97/coldatoms-0.1.11-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,154 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/b2/d3/8e110f9386336d1d2bc8410c2d8ce6c7162b1cac218b7b8d3dd3ce76a656/coldatoms-0.1.11-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,154 Found link https://files.pythonhosted.org/packages/2c/29/5709828c594f7dc89beb6c7d564833c9be7418c815f4e19140cfe5444b7b/coldatoms-0.1.11.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.11 2025-09-08T10:02:37,155 Fetching project page and analyzing links: https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:37,155 Getting page https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:37,156 Found index url https://www.piwheels.org/simple/ 2025-09-08T10:02:37,259 Fetched page https://www.piwheels.org/simple/coldatoms/ as text/html 2025-09-08T10:02:37,260 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.4-py3-none-any.whl#sha256=08310a9bb88144db465095da11853bb50cf221c7ab80a0c7027c6bbda2410037 (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:37,260 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.3-py3-none-any.whl#sha256=2ef31f59bfbc45eab173740b7cb991070145daad1b2fa98285a41054c5ba802f (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:37,260 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.2-py3-none-any.whl#sha256=44a268f6341574e339c6f71425806ac4a51ed78d7aa9d98e66d5b3f9a5751111 (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:37,261 Skipping link: not a file: https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:37,261 Skipping link: not a file: https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:37,284 Given no hashes to check 1 links for project 'coldatoms': discarding no candidates 2025-09-08T10:02:37,285 Collecting coldatoms==0.1.9 2025-09-08T10:02:37,287 Created temporary directory: /tmp/pip-unpack-re02zq_0 2025-09-08T10:02:37,425 Downloading coldatoms-0.1.9.tar.gz (93 kB) 2025-09-08T10:02:37,493 Added coldatoms==0.1.9 from https://files.pythonhosted.org/packages/5f/56/341583ff7eb1f1514d52d51d8582ee04fce1d8554ce025551650521b35f0/coldatoms-0.1.9.tar.gz to build tracker '/tmp/pip-build-tracker-skz_xnd_' 2025-09-08T10:02:37,494 Running setup.py (path:/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py) egg_info for package coldatoms 2025-09-08T10:02:37,494 Created temporary directory: /tmp/pip-pip-egg-info-7hnjngvw 2025-09-08T10:02:37,495 Preparing metadata (setup.py): started 2025-09-08T10:02:37,495 Running command python setup.py egg_info 2025-09-08T10:02:38,095 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T10:02:38,095 !! 2025-09-08T10:02:38,095 ******************************************************************************** 2025-09-08T10:02:38,096 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T10:02:38,096 versions. Please use the underscore name 'description_file' instead. 2025-09-08T10:02:38,096 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T10:02:38,096 or your builds will no longer be supported. 2025-09-08T10:02:38,096 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T10:02:38,096 ******************************************************************************** 2025-09-08T10:02:38,096 !! 2025-09-08T10:02:38,096 opt = self._enforce_underscore(opt, section) 2025-09-08T10:02:38,121 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T10:02:38,121 !! 2025-09-08T10:02:38,122 ******************************************************************************** 2025-09-08T10:02:38,122 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T10:02:38,122 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T10:02:38,122 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T10:02:38,122 or your builds will no longer be supported. 2025-09-08T10:02:38,122 ******************************************************************************** 2025-09-08T10:02:38,122 !! 2025-09-08T10:02:38,122 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T10:02:38,373 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T10:02:38,373 !! 2025-09-08T10:02:38,374 ******************************************************************************** 2025-09-08T10:02:38,374 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T10:02:38,374 versions. Please use the underscore name 'description_file' instead. 2025-09-08T10:02:38,374 (Affected: coldatoms). 2025-09-08T10:02:38,374 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T10:02:38,374 or your builds will no longer be supported. 2025-09-08T10:02:38,374 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T10:02:38,374 ******************************************************************************** 2025-09-08T10:02:38,375 !! 2025-09-08T10:02:38,375 opt = self._enforce_underscore(opt, section) 2025-09-08T10:02:38,452 running egg_info 2025-09-08T10:02:38,519 creating /tmp/pip-pip-egg-info-7hnjngvw/coldatoms.egg-info 2025-09-08T10:02:38,519 writing /tmp/pip-pip-egg-info-7hnjngvw/coldatoms.egg-info/PKG-INFO 2025-09-08T10:02:38,520 writing dependency_links to /tmp/pip-pip-egg-info-7hnjngvw/coldatoms.egg-info/dependency_links.txt 2025-09-08T10:02:38,521 writing requirements to /tmp/pip-pip-egg-info-7hnjngvw/coldatoms.egg-info/requires.txt 2025-09-08T10:02:38,521 writing top-level names to /tmp/pip-pip-egg-info-7hnjngvw/coldatoms.egg-info/top_level.txt 2025-09-08T10:02:38,521 writing manifest file '/tmp/pip-pip-egg-info-7hnjngvw/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:38,729 reading manifest file '/tmp/pip-pip-egg-info-7hnjngvw/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:38,729 reading manifest template 'MANIFEST.in' 2025-09-08T10:02:38,735 warning: no files found matching '*.pxi' under directory 'src' 2025-09-08T10:02:38,739 adding license file 'LICENSE' 2025-09-08T10:02:38,742 writing manifest file '/tmp/pip-pip-egg-info-7hnjngvw/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:38,837 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T10:02:38,841 Source in /tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4 has version 0.1.9, which satisfies requirement coldatoms==0.1.9 from https://files.pythonhosted.org/packages/5f/56/341583ff7eb1f1514d52d51d8582ee04fce1d8554ce025551650521b35f0/coldatoms-0.1.9.tar.gz 2025-09-08T10:02:38,842 Removed coldatoms==0.1.9 from https://files.pythonhosted.org/packages/5f/56/341583ff7eb1f1514d52d51d8582ee04fce1d8554ce025551650521b35f0/coldatoms-0.1.9.tar.gz from build tracker '/tmp/pip-build-tracker-skz_xnd_' 2025-09-08T10:02:38,845 Created temporary directory: /tmp/pip-unpack-lvxtg9j0 2025-09-08T10:02:38,845 Created temporary directory: /tmp/pip-unpack-kmct1hj9 2025-09-08T10:02:38,846 Building wheels for collected packages: coldatoms 2025-09-08T10:02:38,847 Created temporary directory: /tmp/pip-wheel-06518wg2 2025-09-08T10:02:38,848 DEPRECATION: Building 'coldatoms' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'coldatoms'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T10:02:38,849 Building wheel for coldatoms (setup.py): started 2025-09-08T10:02:38,850 Destination directory: /tmp/pip-wheel-06518wg2 2025-09-08T10:02:38,850 Running command python setup.py bdist_wheel 2025-09-08T10:02:40,229 Compiling src/coldatoms_lib/coldatoms_lib.pyx because it changed. 2025-09-08T10:02:40,229 [1/1] Cythonizing src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:41,696 Error compiling Cython file: 2025-09-08T10:02:41,696 ------------------------------------------------------------ 2025-09-08T10:02:41,696 ... 2025-09-08T10:02:41,696 import cython 2025-09-08T10:02:41,696 import numpy as np 2025-09-08T10:02:41,696 cimport numpy as np 2025-09-08T10:02:41,696 cimport ccoldatoms_lib 2025-09-08T10:02:41,696 ^ 2025-09-08T10:02:41,697 ------------------------------------------------------------ 2025-09-08T10:02:41,697 src/coldatoms_lib/coldatoms_lib.pyx:4:8: 'ccoldatoms_lib.pxd' not found 2025-09-08T10:02:41,728 Error compiling Cython file: 2025-09-08T10:02:41,728 ------------------------------------------------------------ 2025-09-08T10:02:41,728 ... 2025-09-08T10:02:41,728 bend_kick_update_vector(dt, omegaB, x, v) 2025-09-08T10:02:41,728 cdef class Rng(object): 2025-09-08T10:02:41,729 cdef ccoldatoms_lib.CARandCtx* _generator 2025-09-08T10:02:41,729 ^ 2025-09-08T10:02:41,729 ------------------------------------------------------------ 2025-09-08T10:02:41,729 src/coldatoms_lib/coldatoms_lib.pyx:114:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:41,789 Error compiling Cython file: 2025-09-08T10:02:41,790 ------------------------------------------------------------ 2025-09-08T10:02:41,790 ... 2025-09-08T10:02:41,790 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:41,790 cdef num_ptcls 2025-09-08T10:02:41,790 num_ptcls = positions.shape[0] 2025-09-08T10:02:41,790 ccoldatoms_lib.ca_coulomb_force( 2025-09-08T10:02:41,790 ^ 2025-09-08T10:02:41,790 ------------------------------------------------------------ 2025-09-08T10:02:41,791 src/coldatoms_lib/coldatoms_lib.pyx:19:18: cimported module has no attribute 'ca_coulomb_force' 2025-09-08T10:02:41,791 Error compiling Cython file: 2025-09-08T10:02:41,791 ------------------------------------------------------------ 2025-09-08T10:02:41,791 ... 2025-09-08T10:02:41,791 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:41,791 cdef num_ptcls 2025-09-08T10:02:41,791 num_ptcls = positions.shape[0] 2025-09-08T10:02:41,791 ccoldatoms_lib.ca_coulomb_force_per_particle_charge( 2025-09-08T10:02:41,792 ^ 2025-09-08T10:02:41,792 ------------------------------------------------------------ 2025-09-08T10:02:41,792 src/coldatoms_lib/coldatoms_lib.pyx:34:18: cimported module has no attribute 'ca_coulomb_force_per_particle_charge' 2025-09-08T10:02:41,793 Error compiling Cython file: 2025-09-08T10:02:41,794 ------------------------------------------------------------ 2025-09-08T10:02:41,794 ... 2025-09-08T10:02:41,794 assert(forces.shape[1] == 3) 2025-09-08T10:02:41,794 cdef num_ptcls 2025-09-08T10:02:41,794 num_ptcls = positions.shape[0] 2025-09-08T10:02:41,794 ccoldatoms_lib.ca_harmonic_trap_forces( 2025-09-08T10:02:41,794 ^ 2025-09-08T10:02:41,794 ------------------------------------------------------------ 2025-09-08T10:02:41,795 src/coldatoms_lib/coldatoms_lib.pyx:53:18: cimported module has no attribute 'ca_harmonic_trap_forces' 2025-09-08T10:02:41,796 Error compiling Cython file: 2025-09-08T10:02:41,796 ------------------------------------------------------------ 2025-09-08T10:02:41,796 ... 2025-09-08T10:02:41,796 assert(forces.shape[1] == 3) 2025-09-08T10:02:41,797 cdef num_ptcls 2025-09-08T10:02:41,797 num_ptcls = positions.shape[0] 2025-09-08T10:02:41,797 ccoldatoms_lib.ca_harmonic_trap_forces_per_particle_charge( 2025-09-08T10:02:41,797 ^ 2025-09-08T10:02:41,797 ------------------------------------------------------------ 2025-09-08T10:02:41,797 src/coldatoms_lib/coldatoms_lib.pyx:72:18: cimported module has no attribute 'ca_harmonic_trap_forces_per_particle_charge' 2025-09-08T10:02:41,797 Error compiling Cython file: 2025-09-08T10:02:41,798 ------------------------------------------------------------ 2025-09-08T10:02:41,798 ... 2025-09-08T10:02:41,798 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:41,798 cdef num_ptcls 2025-09-08T10:02:41,798 num_ptcls = x.shape[0] 2025-09-08T10:02:41,798 ccoldatoms_lib.ca_bend_kick_update_scalar( 2025-09-08T10:02:41,798 ^ 2025-09-08T10:02:41,798 ------------------------------------------------------------ 2025-09-08T10:02:41,799 src/coldatoms_lib/coldatoms_lib.pyx:86:18: cimported module has no attribute 'ca_bend_kick_update_scalar' 2025-09-08T10:02:41,799 Error compiling Cython file: 2025-09-08T10:02:41,799 ------------------------------------------------------------ 2025-09-08T10:02:41,799 ... 2025-09-08T10:02:41,799 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:41,799 cdef num_ptcls 2025-09-08T10:02:41,799 num_ptcls = x.shape[0] 2025-09-08T10:02:41,799 ccoldatoms_lib.ca_bend_kick_update_vector( 2025-09-08T10:02:41,800 ^ 2025-09-08T10:02:41,800 ------------------------------------------------------------ 2025-09-08T10:02:41,800 src/coldatoms_lib/coldatoms_lib.pyx:101:18: cimported module has no attribute 'ca_bend_kick_update_vector' 2025-09-08T10:02:41,801 Error compiling Cython file: 2025-09-08T10:02:41,801 ------------------------------------------------------------ 2025-09-08T10:02:41,801 ... 2025-09-08T10:02:41,801 def context(self): 2025-09-08T10:02:41,801 return self._generator 2025-09-08T10:02:41,801 def __cinit__(self, seed=None): 2025-09-08T10:02:41,801 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:41,801 ^ 2025-09-08T10:02:41,802 ------------------------------------------------------------ 2025-09-08T10:02:41,802 src/coldatoms_lib/coldatoms_lib.pyx:120:40: cimported module has no attribute 'ca_rand_create' 2025-09-08T10:02:41,802 Error compiling Cython file: 2025-09-08T10:02:41,802 ------------------------------------------------------------ 2025-09-08T10:02:41,802 ... 2025-09-08T10:02:41,802 return self._generator 2025-09-08T10:02:41,802 def __cinit__(self, seed=None): 2025-09-08T10:02:41,802 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:41,803 if seed is not None: 2025-09-08T10:02:41,803 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:41,803 ^ 2025-09-08T10:02:41,803 ------------------------------------------------------------ 2025-09-08T10:02:41,803 src/coldatoms_lib/coldatoms_lib.pyx:122:26: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:41,803 Error compiling Cython file: 2025-09-08T10:02:41,803 ------------------------------------------------------------ 2025-09-08T10:02:41,803 ... 2025-09-08T10:02:41,803 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:41,803 if seed is not None: 2025-09-08T10:02:41,804 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:41,804 def __dealloc__(self): 2025-09-08T10:02:41,804 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:41,804 ^ 2025-09-08T10:02:41,804 ------------------------------------------------------------ 2025-09-08T10:02:41,804 src/coldatoms_lib/coldatoms_lib.pyx:125:22: cimported module has no attribute 'ca_rand_destroy' 2025-09-08T10:02:41,804 Error compiling Cython file: 2025-09-08T10:02:41,805 ------------------------------------------------------------ 2025-09-08T10:02:41,805 ... 2025-09-08T10:02:41,805 def __dealloc__(self): 2025-09-08T10:02:41,805 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:41,805 def seed(self, unsigned int seed): 2025-09-08T10:02:41,805 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:41,805 ^ 2025-09-08T10:02:41,805 ------------------------------------------------------------ 2025-09-08T10:02:41,805 src/coldatoms_lib/coldatoms_lib.pyx:128:22: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:41,806 Error compiling Cython file: 2025-09-08T10:02:41,806 ------------------------------------------------------------ 2025-09-08T10:02:41,806 ... 2025-09-08T10:02:41,806 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:41,806 def fill(self, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:41,806 cdef int n = array.size 2025-09-08T10:02:41,806 cdef double *a = array.data 2025-09-08T10:02:41,806 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:41,806 ^ 2025-09-08T10:02:41,807 ------------------------------------------------------------ 2025-09-08T10:02:41,807 src/coldatoms_lib/coldatoms_lib.pyx:133:22: cimported module has no attribute 'ca_rand' 2025-09-08T10:02:41,807 Error compiling Cython file: 2025-09-08T10:02:41,807 ------------------------------------------------------------ 2025-09-08T10:02:41,807 ... 2025-09-08T10:02:41,807 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:41,807 def fill_gaussian(self, double mean, double std, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:41,807 cdef int n = array.size 2025-09-08T10:02:41,808 cdef double *a = array.data 2025-09-08T10:02:41,808 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:41,808 ^ 2025-09-08T10:02:41,808 ------------------------------------------------------------ 2025-09-08T10:02:41,808 src/coldatoms_lib/coldatoms_lib.pyx:138:22: cimported module has no attribute 'ca_rand_gaussian' 2025-09-08T10:02:41,808 Error compiling Cython file: 2025-09-08T10:02:41,808 ------------------------------------------------------------ 2025-09-08T10:02:41,808 ... 2025-09-08T10:02:41,808 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:41,809 def fill_poisson(self, double nbar, np.ndarray[int, mode="c"] array): 2025-09-08T10:02:41,809 cdef int n = array.size 2025-09-08T10:02:41,809 cdef int *a = array.data 2025-09-08T10:02:41,809 ccoldatoms_lib.ca_rand_poisson(self._generator, n, nbar, a) 2025-09-08T10:02:41,809 ^ 2025-09-08T10:02:41,809 ------------------------------------------------------------ 2025-09-08T10:02:41,809 src/coldatoms_lib/coldatoms_lib.pyx:143:22: cimported module has no attribute 'ca_rand_poisson' 2025-09-08T10:02:41,809 Error compiling Cython file: 2025-09-08T10:02:41,810 ------------------------------------------------------------ 2025-09-08T10:02:41,810 ... 2025-09-08T10:02:41,810 assert(delta.shape[0] == nbar.shape[0]) 2025-09-08T10:02:41,810 cdef num_ptcls 2025-09-08T10:02:41,810 num_ptcls = nbar.shape[0] 2025-09-08T10:02:41,810 ccoldatoms_lib.ca_compute_nbars(num_ptcls, dt, gamma, &s_of_r[0], &delta[0], &nbar[0]) 2025-09-08T10:02:41,810 ^ 2025-09-08T10:02:41,810 ------------------------------------------------------------ 2025-09-08T10:02:41,810 src/coldatoms_lib/coldatoms_lib.pyx:162:18: cimported module has no attribute 'ca_compute_nbars' 2025-09-08T10:02:41,811 Error compiling Cython file: 2025-09-08T10:02:41,811 ------------------------------------------------------------ 2025-09-08T10:02:41,811 ... 2025-09-08T10:02:41,811 assert(f.shape[1] == 3) 2025-09-08T10:02:41,811 assert(hbar_k.size == 3) 2025-09-08T10:02:41,811 cdef num_ptcls 2025-09-08T10:02:41,811 num_ptcls = nbars.shape[0] 2025-09-08T10:02:41,811 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:41,811 ^ 2025-09-08T10:02:41,812 ------------------------------------------------------------ 2025-09-08T10:02:41,812 src/coldatoms_lib/coldatoms_lib.pyx:175:18: cimported module has no attribute 'ca_add_radiation_pressure' 2025-09-08T10:02:41,812 Error compiling Cython file: 2025-09-08T10:02:41,812 ------------------------------------------------------------ 2025-09-08T10:02:41,812 ... 2025-09-08T10:02:41,812 cdef num_ptcls 2025-09-08T10:02:41,812 num_ptcls = nbars.shape[0] 2025-09-08T10:02:41,812 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:41,812 num_ptcls, 2025-09-08T10:02:41,813 rng_context, 2025-09-08T10:02:41,813 ^ 2025-09-08T10:02:41,813 ------------------------------------------------------------ 2025-09-08T10:02:41,813 src/coldatoms_lib/coldatoms_lib.pyx:177:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:41,836 Traceback (most recent call last): 2025-09-08T10:02:41,839 File "", line 2, in 2025-09-08T10:02:41,839 exec(compile(''' 2025-09-08T10:02:41,839 ~~~~^^^^^^^^^^^^ 2025-09-08T10:02:41,840 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:41,840 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:41,840 ...<32 lines>... 2025-09-08T10:02:41,840 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:41,840 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:41,840 ''' % ('/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py',), "", "exec")) 2025-09-08T10:02:41,840 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:41,840 File "", line 35, in 2025-09-08T10:02:41,841 File "/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py", line 106, in 2025-09-08T10:02:41,841 setup_package() 2025-09-08T10:02:41,841 ~~~~~~~~~~~~~^^ 2025-09-08T10:02:41,841 File "/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py", line 101, in setup_package 2025-09-08T10:02:41,841 metadata.update(get_package_info()) 2025-09-08T10:02:41,841 ~~~~~~~~~~~~~~~~^^ 2025-09-08T10:02:41,841 File "/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py", line 54, in get_package_info 2025-09-08T10:02:41,841 coldatoms_lib = cythonize([Extension( 2025-09-08T10:02:41,841 'coldatoms_lib.coldatoms_lib', 2025-09-08T10:02:41,842 ...<8 lines>... 2025-09-08T10:02:41,842 extra_link_args=extra_link_args 2025-09-08T10:02:41,842 )]) 2025-09-08T10:02:41,842 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T10:02:41,842 cythonize_one(*args) 2025-09-08T10:02:41,842 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T10:02:41,842 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T10:02:41,842 raise CompileError(None, pyx_file) 2025-09-08T10:02:41,843 Cython.Compiler.Errors.CompileError: src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:42,172 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T10:02:42,185 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T10:02:42,185 exec(compile('"'"''"'"''"'"' 2025-09-08T10:02:42,185 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:42,185 # 2025-09-08T10:02:42,185 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T10:02:42,185 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T10:02:42,185 # - It provides a clear error message when setuptools is not installed. 2025-09-08T10:02:42,185 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T10:02:42,185 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T10:02:42,185 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T10:02:42,185 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T10:02:42,185 import os, sys, tokenize, traceback 2025-09-08T10:02:42,185 2025-09-08T10:02:42,185 try: 2025-09-08T10:02:42,185 import setuptools 2025-09-08T10:02:42,185 except ImportError: 2025-09-08T10:02:42,185 print( 2025-09-08T10:02:42,185 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T10:02:42,185 "the build environment with exception:", 2025-09-08T10:02:42,185 file=sys.stderr, 2025-09-08T10:02:42,185 ) 2025-09-08T10:02:42,185 traceback.print_exc() 2025-09-08T10:02:42,185 sys.exit(1) 2025-09-08T10:02:42,185 2025-09-08T10:02:42,185 __file__ = %r 2025-09-08T10:02:42,185 sys.argv[0] = __file__ 2025-09-08T10:02:42,185 2025-09-08T10:02:42,185 if os.path.exists(__file__): 2025-09-08T10:02:42,185 filename = __file__ 2025-09-08T10:02:42,185 with tokenize.open(__file__) as f: 2025-09-08T10:02:42,185 setup_py_code = f.read() 2025-09-08T10:02:42,185 else: 2025-09-08T10:02:42,185 filename = "" 2025-09-08T10:02:42,185 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T10:02:42,185 2025-09-08T10:02:42,185 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:42,185 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-06518wg2[/] 2025-09-08T10:02:42,185 [bold magenta]cwd[/]: /tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/ 2025-09-08T10:02:42,185 Building wheel for coldatoms (setup.py): finished with status 'error' 2025-09-08T10:02:42,186 ERROR: Failed building wheel for coldatoms 2025-09-08T10:02:42,187 Running setup.py clean for coldatoms 2025-09-08T10:02:42,187 Running command python setup.py clean 2025-09-08T10:02:43,519 Compiling src/coldatoms_lib/coldatoms_lib.pyx because it changed. 2025-09-08T10:02:43,519 [1/1] Cythonizing src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:44,984 Error compiling Cython file: 2025-09-08T10:02:44,984 ------------------------------------------------------------ 2025-09-08T10:02:44,984 ... 2025-09-08T10:02:44,984 import cython 2025-09-08T10:02:44,985 import numpy as np 2025-09-08T10:02:44,985 cimport numpy as np 2025-09-08T10:02:44,985 cimport ccoldatoms_lib 2025-09-08T10:02:44,985 ^ 2025-09-08T10:02:44,985 ------------------------------------------------------------ 2025-09-08T10:02:44,985 src/coldatoms_lib/coldatoms_lib.pyx:4:8: 'ccoldatoms_lib.pxd' not found 2025-09-08T10:02:45,014 Error compiling Cython file: 2025-09-08T10:02:45,014 ------------------------------------------------------------ 2025-09-08T10:02:45,014 ... 2025-09-08T10:02:45,014 bend_kick_update_vector(dt, omegaB, x, v) 2025-09-08T10:02:45,015 cdef class Rng(object): 2025-09-08T10:02:45,015 cdef ccoldatoms_lib.CARandCtx* _generator 2025-09-08T10:02:45,015 ^ 2025-09-08T10:02:45,015 ------------------------------------------------------------ 2025-09-08T10:02:45,015 src/coldatoms_lib/coldatoms_lib.pyx:114:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:45,075 Error compiling Cython file: 2025-09-08T10:02:45,076 ------------------------------------------------------------ 2025-09-08T10:02:45,076 ... 2025-09-08T10:02:45,076 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:45,076 cdef num_ptcls 2025-09-08T10:02:45,076 num_ptcls = positions.shape[0] 2025-09-08T10:02:45,076 ccoldatoms_lib.ca_coulomb_force( 2025-09-08T10:02:45,076 ^ 2025-09-08T10:02:45,076 ------------------------------------------------------------ 2025-09-08T10:02:45,077 src/coldatoms_lib/coldatoms_lib.pyx:19:18: cimported module has no attribute 'ca_coulomb_force' 2025-09-08T10:02:45,077 Error compiling Cython file: 2025-09-08T10:02:45,077 ------------------------------------------------------------ 2025-09-08T10:02:45,077 ... 2025-09-08T10:02:45,077 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:45,077 cdef num_ptcls 2025-09-08T10:02:45,077 num_ptcls = positions.shape[0] 2025-09-08T10:02:45,078 ccoldatoms_lib.ca_coulomb_force_per_particle_charge( 2025-09-08T10:02:45,078 ^ 2025-09-08T10:02:45,078 ------------------------------------------------------------ 2025-09-08T10:02:45,078 src/coldatoms_lib/coldatoms_lib.pyx:34:18: cimported module has no attribute 'ca_coulomb_force_per_particle_charge' 2025-09-08T10:02:45,079 Error compiling Cython file: 2025-09-08T10:02:45,080 ------------------------------------------------------------ 2025-09-08T10:02:45,080 ... 2025-09-08T10:02:45,080 assert(forces.shape[1] == 3) 2025-09-08T10:02:45,080 cdef num_ptcls 2025-09-08T10:02:45,080 num_ptcls = positions.shape[0] 2025-09-08T10:02:45,080 ccoldatoms_lib.ca_harmonic_trap_forces( 2025-09-08T10:02:45,080 ^ 2025-09-08T10:02:45,080 ------------------------------------------------------------ 2025-09-08T10:02:45,081 src/coldatoms_lib/coldatoms_lib.pyx:53:18: cimported module has no attribute 'ca_harmonic_trap_forces' 2025-09-08T10:02:45,082 Error compiling Cython file: 2025-09-08T10:02:45,082 ------------------------------------------------------------ 2025-09-08T10:02:45,082 ... 2025-09-08T10:02:45,082 assert(forces.shape[1] == 3) 2025-09-08T10:02:45,082 cdef num_ptcls 2025-09-08T10:02:45,083 num_ptcls = positions.shape[0] 2025-09-08T10:02:45,083 ccoldatoms_lib.ca_harmonic_trap_forces_per_particle_charge( 2025-09-08T10:02:45,083 ^ 2025-09-08T10:02:45,083 ------------------------------------------------------------ 2025-09-08T10:02:45,083 src/coldatoms_lib/coldatoms_lib.pyx:72:18: cimported module has no attribute 'ca_harmonic_trap_forces_per_particle_charge' 2025-09-08T10:02:45,083 Error compiling Cython file: 2025-09-08T10:02:45,083 ------------------------------------------------------------ 2025-09-08T10:02:45,084 ... 2025-09-08T10:02:45,084 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:45,084 cdef num_ptcls 2025-09-08T10:02:45,084 num_ptcls = x.shape[0] 2025-09-08T10:02:45,084 ccoldatoms_lib.ca_bend_kick_update_scalar( 2025-09-08T10:02:45,084 ^ 2025-09-08T10:02:45,084 ------------------------------------------------------------ 2025-09-08T10:02:45,084 src/coldatoms_lib/coldatoms_lib.pyx:86:18: cimported module has no attribute 'ca_bend_kick_update_scalar' 2025-09-08T10:02:45,085 Error compiling Cython file: 2025-09-08T10:02:45,085 ------------------------------------------------------------ 2025-09-08T10:02:45,085 ... 2025-09-08T10:02:45,085 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:45,085 cdef num_ptcls 2025-09-08T10:02:45,085 num_ptcls = x.shape[0] 2025-09-08T10:02:45,085 ccoldatoms_lib.ca_bend_kick_update_vector( 2025-09-08T10:02:45,085 ^ 2025-09-08T10:02:45,086 ------------------------------------------------------------ 2025-09-08T10:02:45,086 src/coldatoms_lib/coldatoms_lib.pyx:101:18: cimported module has no attribute 'ca_bend_kick_update_vector' 2025-09-08T10:02:45,087 Error compiling Cython file: 2025-09-08T10:02:45,087 ------------------------------------------------------------ 2025-09-08T10:02:45,087 ... 2025-09-08T10:02:45,087 def context(self): 2025-09-08T10:02:45,087 return self._generator 2025-09-08T10:02:45,087 def __cinit__(self, seed=None): 2025-09-08T10:02:45,087 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:45,087 ^ 2025-09-08T10:02:45,087 ------------------------------------------------------------ 2025-09-08T10:02:45,088 src/coldatoms_lib/coldatoms_lib.pyx:120:40: cimported module has no attribute 'ca_rand_create' 2025-09-08T10:02:45,088 Error compiling Cython file: 2025-09-08T10:02:45,088 ------------------------------------------------------------ 2025-09-08T10:02:45,088 ... 2025-09-08T10:02:45,088 return self._generator 2025-09-08T10:02:45,088 def __cinit__(self, seed=None): 2025-09-08T10:02:45,088 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:45,088 if seed is not None: 2025-09-08T10:02:45,088 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:45,089 ^ 2025-09-08T10:02:45,089 ------------------------------------------------------------ 2025-09-08T10:02:45,089 src/coldatoms_lib/coldatoms_lib.pyx:122:26: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:45,089 Error compiling Cython file: 2025-09-08T10:02:45,089 ------------------------------------------------------------ 2025-09-08T10:02:45,089 ... 2025-09-08T10:02:45,089 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:45,089 if seed is not None: 2025-09-08T10:02:45,089 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:45,090 def __dealloc__(self): 2025-09-08T10:02:45,090 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:45,090 ^ 2025-09-08T10:02:45,090 ------------------------------------------------------------ 2025-09-08T10:02:45,090 src/coldatoms_lib/coldatoms_lib.pyx:125:22: cimported module has no attribute 'ca_rand_destroy' 2025-09-08T10:02:45,090 Error compiling Cython file: 2025-09-08T10:02:45,090 ------------------------------------------------------------ 2025-09-08T10:02:45,090 ... 2025-09-08T10:02:45,091 def __dealloc__(self): 2025-09-08T10:02:45,091 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:45,091 def seed(self, unsigned int seed): 2025-09-08T10:02:45,091 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:45,091 ^ 2025-09-08T10:02:45,091 ------------------------------------------------------------ 2025-09-08T10:02:45,091 src/coldatoms_lib/coldatoms_lib.pyx:128:22: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:45,091 Error compiling Cython file: 2025-09-08T10:02:45,092 ------------------------------------------------------------ 2025-09-08T10:02:45,092 ... 2025-09-08T10:02:45,092 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:45,092 def fill(self, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:45,092 cdef int n = array.size 2025-09-08T10:02:45,092 cdef double *a = array.data 2025-09-08T10:02:45,092 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:45,092 ^ 2025-09-08T10:02:45,092 ------------------------------------------------------------ 2025-09-08T10:02:45,093 src/coldatoms_lib/coldatoms_lib.pyx:133:22: cimported module has no attribute 'ca_rand' 2025-09-08T10:02:45,093 Error compiling Cython file: 2025-09-08T10:02:45,093 ------------------------------------------------------------ 2025-09-08T10:02:45,093 ... 2025-09-08T10:02:45,093 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:45,093 def fill_gaussian(self, double mean, double std, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:45,093 cdef int n = array.size 2025-09-08T10:02:45,093 cdef double *a = array.data 2025-09-08T10:02:45,093 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:45,093 ^ 2025-09-08T10:02:45,094 ------------------------------------------------------------ 2025-09-08T10:02:45,094 src/coldatoms_lib/coldatoms_lib.pyx:138:22: cimported module has no attribute 'ca_rand_gaussian' 2025-09-08T10:02:45,094 Error compiling Cython file: 2025-09-08T10:02:45,094 ------------------------------------------------------------ 2025-09-08T10:02:45,094 ... 2025-09-08T10:02:45,094 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:45,094 def fill_poisson(self, double nbar, np.ndarray[int, mode="c"] array): 2025-09-08T10:02:45,095 cdef int n = array.size 2025-09-08T10:02:45,095 cdef int *a = array.data 2025-09-08T10:02:45,095 ccoldatoms_lib.ca_rand_poisson(self._generator, n, nbar, a) 2025-09-08T10:02:45,095 ^ 2025-09-08T10:02:45,095 ------------------------------------------------------------ 2025-09-08T10:02:45,095 src/coldatoms_lib/coldatoms_lib.pyx:143:22: cimported module has no attribute 'ca_rand_poisson' 2025-09-08T10:02:45,095 Error compiling Cython file: 2025-09-08T10:02:45,095 ------------------------------------------------------------ 2025-09-08T10:02:45,095 ... 2025-09-08T10:02:45,095 assert(delta.shape[0] == nbar.shape[0]) 2025-09-08T10:02:45,096 cdef num_ptcls 2025-09-08T10:02:45,096 num_ptcls = nbar.shape[0] 2025-09-08T10:02:45,096 ccoldatoms_lib.ca_compute_nbars(num_ptcls, dt, gamma, &s_of_r[0], &delta[0], &nbar[0]) 2025-09-08T10:02:45,096 ^ 2025-09-08T10:02:45,096 ------------------------------------------------------------ 2025-09-08T10:02:45,096 src/coldatoms_lib/coldatoms_lib.pyx:162:18: cimported module has no attribute 'ca_compute_nbars' 2025-09-08T10:02:45,097 Error compiling Cython file: 2025-09-08T10:02:45,097 ------------------------------------------------------------ 2025-09-08T10:02:45,097 ... 2025-09-08T10:02:45,097 assert(f.shape[1] == 3) 2025-09-08T10:02:45,097 assert(hbar_k.size == 3) 2025-09-08T10:02:45,097 cdef num_ptcls 2025-09-08T10:02:45,097 num_ptcls = nbars.shape[0] 2025-09-08T10:02:45,097 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:45,097 ^ 2025-09-08T10:02:45,097 ------------------------------------------------------------ 2025-09-08T10:02:45,098 src/coldatoms_lib/coldatoms_lib.pyx:175:18: cimported module has no attribute 'ca_add_radiation_pressure' 2025-09-08T10:02:45,098 Error compiling Cython file: 2025-09-08T10:02:45,098 ------------------------------------------------------------ 2025-09-08T10:02:45,098 ... 2025-09-08T10:02:45,098 cdef num_ptcls 2025-09-08T10:02:45,098 num_ptcls = nbars.shape[0] 2025-09-08T10:02:45,098 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:45,098 num_ptcls, 2025-09-08T10:02:45,098 rng_context, 2025-09-08T10:02:45,098 ^ 2025-09-08T10:02:45,099 ------------------------------------------------------------ 2025-09-08T10:02:45,099 src/coldatoms_lib/coldatoms_lib.pyx:177:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:45,121 Traceback (most recent call last): 2025-09-08T10:02:45,124 File "", line 2, in 2025-09-08T10:02:45,124 exec(compile(''' 2025-09-08T10:02:45,124 ~~~~^^^^^^^^^^^^ 2025-09-08T10:02:45,125 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:45,125 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:45,125 ...<32 lines>... 2025-09-08T10:02:45,125 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:45,125 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:45,125 ''' % ('/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py',), "", "exec")) 2025-09-08T10:02:45,125 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:45,125 File "", line 35, in 2025-09-08T10:02:45,126 File "/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py", line 106, in 2025-09-08T10:02:45,126 setup_package() 2025-09-08T10:02:45,126 ~~~~~~~~~~~~~^^ 2025-09-08T10:02:45,126 File "/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py", line 101, in setup_package 2025-09-08T10:02:45,126 metadata.update(get_package_info()) 2025-09-08T10:02:45,126 ~~~~~~~~~~~~~~~~^^ 2025-09-08T10:02:45,126 File "/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py", line 54, in get_package_info 2025-09-08T10:02:45,126 coldatoms_lib = cythonize([Extension( 2025-09-08T10:02:45,126 'coldatoms_lib.coldatoms_lib', 2025-09-08T10:02:45,127 ...<8 lines>... 2025-09-08T10:02:45,127 extra_link_args=extra_link_args 2025-09-08T10:02:45,127 )]) 2025-09-08T10:02:45,127 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T10:02:45,127 cythonize_one(*args) 2025-09-08T10:02:45,127 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T10:02:45,127 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T10:02:45,127 raise CompileError(None, pyx_file) 2025-09-08T10:02:45,127 Cython.Compiler.Errors.CompileError: src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:45,456 ERROR: python setup.py clean exited with 1 2025-09-08T10:02:45,461 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T10:02:45,461 exec(compile('"'"''"'"''"'"' 2025-09-08T10:02:45,461 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:45,461 # 2025-09-08T10:02:45,461 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T10:02:45,461 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T10:02:45,461 # - It provides a clear error message when setuptools is not installed. 2025-09-08T10:02:45,461 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T10:02:45,461 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T10:02:45,461 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T10:02:45,461 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T10:02:45,461 import os, sys, tokenize, traceback 2025-09-08T10:02:45,461 2025-09-08T10:02:45,461 try: 2025-09-08T10:02:45,461 import setuptools 2025-09-08T10:02:45,461 except ImportError: 2025-09-08T10:02:45,461 print( 2025-09-08T10:02:45,461 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T10:02:45,461 "the build environment with exception:", 2025-09-08T10:02:45,461 file=sys.stderr, 2025-09-08T10:02:45,461 ) 2025-09-08T10:02:45,461 traceback.print_exc() 2025-09-08T10:02:45,461 sys.exit(1) 2025-09-08T10:02:45,461 2025-09-08T10:02:45,461 __file__ = %r 2025-09-08T10:02:45,461 sys.argv[0] = __file__ 2025-09-08T10:02:45,461 2025-09-08T10:02:45,461 if os.path.exists(__file__): 2025-09-08T10:02:45,461 filename = __file__ 2025-09-08T10:02:45,461 with tokenize.open(__file__) as f: 2025-09-08T10:02:45,461 setup_py_code = f.read() 2025-09-08T10:02:45,461 else: 2025-09-08T10:02:45,461 filename = "" 2025-09-08T10:02:45,461 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T10:02:45,461 2025-09-08T10:02:45,461 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:45,461 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4/setup.py'"'"',), "", "exec"))' clean --all[/] 2025-09-08T10:02:45,461 [bold magenta]cwd[/]: /tmp/pip-wheel-o5dxv5pt/coldatoms_02a2f7b461f3462ca8f97ccd04b144c4 2025-09-08T10:02:45,461 ERROR: Failed cleaning build dir for coldatoms 2025-09-08T10:02:45,462 Failed to build coldatoms 2025-09-08T10:02:45,463 ERROR: Failed to build one or more wheels 2025-09-08T10:02:45,464 Exception information: 2025-09-08T10:02:45,464 Traceback (most recent call last): 2025-09-08T10:02:45,464 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T10:02:45,464 status = _inner_run() 2025-09-08T10:02:45,464 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T10:02:45,464 return self.run(options, args) 2025-09-08T10:02:45,464 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T10:02:45,464 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T10:02:45,464 return func(self, options, args) 2025-09-08T10:02:45,464 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T10:02:45,464 raise CommandError("Failed to build one or more wheels") 2025-09-08T10:02:45,464 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T10:02:45,468 Removed build tracker: '/tmp/pip-build-tracker-skz_xnd_'