2025-09-08T10:02:36,878 Created temporary directory: /tmp/pip-build-tracker-52a82960 2025-09-08T10:02:36,879 Initialized build tracking at /tmp/pip-build-tracker-52a82960 2025-09-08T10:02:36,879 Created build tracker: /tmp/pip-build-tracker-52a82960 2025-09-08T10:02:36,879 Entered build tracker: /tmp/pip-build-tracker-52a82960 2025-09-08T10:02:36,879 Created temporary directory: /tmp/pip-wheel-idi6ax14 2025-09-08T10:02:36,882 Created temporary directory: /tmp/pip-ephem-wheel-cache-1fx887e_ 2025-09-08T10:02:36,939 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T10:02:36,942 2 location(s) to search for versions of coldatoms: 2025-09-08T10:02:36,942 * https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:36,942 * https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:36,942 Fetching project page and analyzing links: https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:36,942 Getting page https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:36,943 Found index url https://pypi.org/simple/ 2025-09-08T10:02:37,013 Fetched page https://pypi.org/simple/coldatoms/ as application/vnd.pypi.simple.v1+json 2025-09-08T10:02:37,016 Found link https://files.pythonhosted.org/packages/6e/ee/c83784c33206d373d7b87ec969cd0b8e32dcbd21ac548f1810cd7abf629c/coldatoms-0.1.0.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.0 2025-09-08T10:02:37,016 Found link https://files.pythonhosted.org/packages/cd/c3/c9c0cc120aa319e2152fdb3d193e1387baed5bce4fbacbb5a2a519b9406c/coldatoms-0.1.1.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.1 2025-09-08T10:02:37,017 Found link https://files.pythonhosted.org/packages/94/55/3c8135820d703a1e32afab1982d0070b579fa871fe4293166486bb36b956/coldatoms-0.1.2.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.2 2025-09-08T10:02:37,017 Found link https://files.pythonhosted.org/packages/c6/c3/557af9dc2695327ed0f8406a952a8d1948431cef8f415b6932e60bfe3c4e/coldatoms-0.1.3.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.3 2025-09-08T10:02:37,017 Found link https://files.pythonhosted.org/packages/8b/7a/1c2e545f787ed5ce93d70a5dd265f5d0899839bd380d585e037ca524aa40/coldatoms-0.1.4.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.4 2025-09-08T10:02:37,017 Found link https://files.pythonhosted.org/packages/b8/9e/f542ddbc690763200bb0a52e5af5af93428bb7faff1b9c707dc73fa87781/coldatoms-0.1.6.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.6 2025-09-08T10:02:37,018 Found link https://files.pythonhosted.org/packages/d1/84/a27e557c377cb19aea611cb4b80ea14fbc1b83c6775e19b3d0f29c4c4ee4/coldatoms-0.1.7.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.7 2025-09-08T10:02:37,018 Found link https://files.pythonhosted.org/packages/f4/23/ec62c3374b3f16d59bc6b0d5b3f51c3f34b46898bc361ca17edc37287a7e/coldatoms-0.1.8.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.8 2025-09-08T10:02:37,018 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/29/71/f8c4bf3b04bcf913f75f9b76f741f1acdcdc563a89b321b0b1dd134edf3a/coldatoms-0.1.9-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,018 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/39/30/ea392cbdfc8b02b17059eaf94c8a00a7aecc62887506a62857547b4e358c/coldatoms-0.1.9-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,018 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/d2/85/95e68870be4b156ca46aa048ad09d1bed503240b2d8fee02ab7ce9a1320b/coldatoms-0.1.9-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,018 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/9e/6f/e11e8448b2150baa9151686daca1abef2107607a885be46fa56e7e10762b/coldatoms-0.1.9-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,019 Found link https://files.pythonhosted.org/packages/5f/56/341583ff7eb1f1514d52d51d8582ee04fce1d8554ce025551650521b35f0/coldatoms-0.1.9.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.9 2025-09-08T10:02:37,019 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/9e/32/a18552f0277c044a2016a9f3b099fc97f656c3d25eec40a26ef56eae702c/coldatoms-0.1.10-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,019 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/1a/d0/90dae1a72fa5a8a005a2fee2eb1c03a8edc3af212aa884df80337d0846d9/coldatoms-0.1.10-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,019 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/00/5f/da4c70bef45c15d7ba771f74993c8384a0c11c29a6c310a8a73c48ea2285/coldatoms-0.1.10-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,019 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/17/40/6f72a8d694ec75e17246e6e42c98ee6fef55563faba31c666ee9a5b01c66/coldatoms-0.1.10-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,019 Found link https://files.pythonhosted.org/packages/e0/45/02d16769676b4bf87bbcbf3225c5ecf02157f8a0e6ac26f9d4600d2017e7/coldatoms-0.1.10.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.10 2025-09-08T10:02:37,019 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/a4/14/4ce514a941f29f89c498e3d0462142dd6441880eea16bb621924232b326c/coldatoms-0.1.11-cp27-cp27m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,020 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/20/9a/4219cad64e9123f334682a5f97d0771b5746228e320fd8c89f7555105ada/coldatoms-0.1.11-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,020 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/bd/fe/a1c846b554de7d2ad0737fdd5ea206451600087f3868490029fd9b873b97/coldatoms-0.1.11-cp34-cp34m-win32.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,020 Skipping link: No binaries permitted for coldatoms: https://files.pythonhosted.org/packages/b2/d3/8e110f9386336d1d2bc8410c2d8ce6c7162b1cac218b7b8d3dd3ce76a656/coldatoms-0.1.11-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/coldatoms/) 2025-09-08T10:02:37,020 Found link https://files.pythonhosted.org/packages/2c/29/5709828c594f7dc89beb6c7d564833c9be7418c815f4e19140cfe5444b7b/coldatoms-0.1.11.tar.gz (from https://pypi.org/simple/coldatoms/), version: 0.1.11 2025-09-08T10:02:37,020 Fetching project page and analyzing links: https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:37,021 Getting page https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:37,022 Found index url https://www.piwheels.org/simple/ 2025-09-08T10:02:37,112 Fetched page https://www.piwheels.org/simple/coldatoms/ as text/html 2025-09-08T10:02:37,114 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.4-py3-none-any.whl#sha256=08310a9bb88144db465095da11853bb50cf221c7ab80a0c7027c6bbda2410037 (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:37,114 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.3-py3-none-any.whl#sha256=2ef31f59bfbc45eab173740b7cb991070145daad1b2fa98285a41054c5ba802f (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:37,114 Skipping link: No binaries permitted for coldatoms: https://archive1.piwheels.org/simple/coldatoms/coldatoms-0.1.2-py3-none-any.whl#sha256=44a268f6341574e339c6f71425806ac4a51ed78d7aa9d98e66d5b3f9a5751111 (from https://www.piwheels.org/simple/coldatoms/) 2025-09-08T10:02:37,114 Skipping link: not a file: https://www.piwheels.org/simple/coldatoms/ 2025-09-08T10:02:37,114 Skipping link: not a file: https://pypi.org/simple/coldatoms/ 2025-09-08T10:02:37,140 Given no hashes to check 1 links for project 'coldatoms': discarding no candidates 2025-09-08T10:02:37,141 Collecting coldatoms==0.1.10 2025-09-08T10:02:37,142 Created temporary directory: /tmp/pip-unpack-xl_963jp 2025-09-08T10:02:37,373 Downloading coldatoms-0.1.10.tar.gz (93 kB) 2025-09-08T10:02:37,431 Added coldatoms==0.1.10 from https://files.pythonhosted.org/packages/e0/45/02d16769676b4bf87bbcbf3225c5ecf02157f8a0e6ac26f9d4600d2017e7/coldatoms-0.1.10.tar.gz to build tracker '/tmp/pip-build-tracker-52a82960' 2025-09-08T10:02:37,432 Running setup.py (path:/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py) egg_info for package coldatoms 2025-09-08T10:02:37,433 Created temporary directory: /tmp/pip-pip-egg-info-ylhenkm5 2025-09-08T10:02:37,433 Preparing metadata (setup.py): started 2025-09-08T10:02:37,434 Running command python setup.py egg_info 2025-09-08T10:02:38,054 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T10:02:38,054 !! 2025-09-08T10:02:38,054 ******************************************************************************** 2025-09-08T10:02:38,054 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T10:02:38,054 versions. Please use the underscore name 'description_file' instead. 2025-09-08T10:02:38,055 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T10:02:38,055 or your builds will no longer be supported. 2025-09-08T10:02:38,055 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T10:02:38,055 ******************************************************************************** 2025-09-08T10:02:38,055 !! 2025-09-08T10:02:38,055 opt = self._enforce_underscore(opt, section) 2025-09-08T10:02:38,080 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T10:02:38,080 !! 2025-09-08T10:02:38,080 ******************************************************************************** 2025-09-08T10:02:38,081 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T10:02:38,081 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T10:02:38,081 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T10:02:38,081 or your builds will no longer be supported. 2025-09-08T10:02:38,081 ******************************************************************************** 2025-09-08T10:02:38,081 !! 2025-09-08T10:02:38,081 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T10:02:38,688 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T10:02:38,688 !! 2025-09-08T10:02:38,688 ******************************************************************************** 2025-09-08T10:02:38,688 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T10:02:38,689 versions. Please use the underscore name 'description_file' instead. 2025-09-08T10:02:38,689 (Affected: coldatoms). 2025-09-08T10:02:38,689 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T10:02:38,689 or your builds will no longer be supported. 2025-09-08T10:02:38,689 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T10:02:38,689 ******************************************************************************** 2025-09-08T10:02:38,689 !! 2025-09-08T10:02:38,689 opt = self._enforce_underscore(opt, section) 2025-09-08T10:02:38,765 running egg_info 2025-09-08T10:02:38,842 creating /tmp/pip-pip-egg-info-ylhenkm5/coldatoms.egg-info 2025-09-08T10:02:38,842 writing /tmp/pip-pip-egg-info-ylhenkm5/coldatoms.egg-info/PKG-INFO 2025-09-08T10:02:38,843 writing dependency_links to /tmp/pip-pip-egg-info-ylhenkm5/coldatoms.egg-info/dependency_links.txt 2025-09-08T10:02:38,844 writing requirements to /tmp/pip-pip-egg-info-ylhenkm5/coldatoms.egg-info/requires.txt 2025-09-08T10:02:38,844 writing top-level names to /tmp/pip-pip-egg-info-ylhenkm5/coldatoms.egg-info/top_level.txt 2025-09-08T10:02:38,844 writing manifest file '/tmp/pip-pip-egg-info-ylhenkm5/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:39,071 reading manifest file '/tmp/pip-pip-egg-info-ylhenkm5/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:39,072 reading manifest template 'MANIFEST.in' 2025-09-08T10:02:39,077 warning: no files found matching '*.pxi' under directory 'src' 2025-09-08T10:02:39,082 adding license file 'LICENSE' 2025-09-08T10:02:39,085 writing manifest file '/tmp/pip-pip-egg-info-ylhenkm5/coldatoms.egg-info/SOURCES.txt' 2025-09-08T10:02:39,203 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T10:02:39,208 Source in /tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a has version 0.1.10, which satisfies requirement coldatoms==0.1.10 from https://files.pythonhosted.org/packages/e0/45/02d16769676b4bf87bbcbf3225c5ecf02157f8a0e6ac26f9d4600d2017e7/coldatoms-0.1.10.tar.gz 2025-09-08T10:02:39,208 Removed coldatoms==0.1.10 from https://files.pythonhosted.org/packages/e0/45/02d16769676b4bf87bbcbf3225c5ecf02157f8a0e6ac26f9d4600d2017e7/coldatoms-0.1.10.tar.gz from build tracker '/tmp/pip-build-tracker-52a82960' 2025-09-08T10:02:39,212 Created temporary directory: /tmp/pip-unpack-no_h6rl5 2025-09-08T10:02:39,212 Created temporary directory: /tmp/pip-unpack-493tzks8 2025-09-08T10:02:39,212 Building wheels for collected packages: coldatoms 2025-09-08T10:02:39,213 Created temporary directory: /tmp/pip-wheel-ae8a0am6 2025-09-08T10:02:39,214 DEPRECATION: Building 'coldatoms' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'coldatoms'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T10:02:39,215 Building wheel for coldatoms (setup.py): started 2025-09-08T10:02:39,215 Destination directory: /tmp/pip-wheel-ae8a0am6 2025-09-08T10:02:39,216 Running command python setup.py bdist_wheel 2025-09-08T10:02:40,565 Compiling src/coldatoms_lib/coldatoms_lib.pyx because it changed. 2025-09-08T10:02:40,565 [1/1] Cythonizing src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:42,033 Error compiling Cython file: 2025-09-08T10:02:42,033 ------------------------------------------------------------ 2025-09-08T10:02:42,033 ... 2025-09-08T10:02:42,033 import cython 2025-09-08T10:02:42,034 import numpy as np 2025-09-08T10:02:42,034 cimport numpy as np 2025-09-08T10:02:42,034 cimport ccoldatoms_lib 2025-09-08T10:02:42,034 ^ 2025-09-08T10:02:42,034 ------------------------------------------------------------ 2025-09-08T10:02:42,034 src/coldatoms_lib/coldatoms_lib.pyx:4:8: 'ccoldatoms_lib.pxd' not found 2025-09-08T10:02:42,066 Error compiling Cython file: 2025-09-08T10:02:42,066 ------------------------------------------------------------ 2025-09-08T10:02:42,066 ... 2025-09-08T10:02:42,066 bend_kick_update_vector(dt, omegaB, x, v) 2025-09-08T10:02:42,067 cdef class Rng(object): 2025-09-08T10:02:42,067 cdef ccoldatoms_lib.CARandCtx* _generator 2025-09-08T10:02:42,067 ^ 2025-09-08T10:02:42,067 ------------------------------------------------------------ 2025-09-08T10:02:42,067 src/coldatoms_lib/coldatoms_lib.pyx:114:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:42,128 Error compiling Cython file: 2025-09-08T10:02:42,128 ------------------------------------------------------------ 2025-09-08T10:02:42,128 ... 2025-09-08T10:02:42,128 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:42,128 cdef num_ptcls 2025-09-08T10:02:42,129 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,129 ccoldatoms_lib.ca_coulomb_force( 2025-09-08T10:02:42,129 ^ 2025-09-08T10:02:42,129 ------------------------------------------------------------ 2025-09-08T10:02:42,129 src/coldatoms_lib/coldatoms_lib.pyx:19:18: cimported module has no attribute 'ca_coulomb_force' 2025-09-08T10:02:42,129 Error compiling Cython file: 2025-09-08T10:02:42,129 ------------------------------------------------------------ 2025-09-08T10:02:42,129 ... 2025-09-08T10:02:42,130 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:42,130 cdef num_ptcls 2025-09-08T10:02:42,130 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,130 ccoldatoms_lib.ca_coulomb_force_per_particle_charge( 2025-09-08T10:02:42,130 ^ 2025-09-08T10:02:42,130 ------------------------------------------------------------ 2025-09-08T10:02:42,130 src/coldatoms_lib/coldatoms_lib.pyx:34:18: cimported module has no attribute 'ca_coulomb_force_per_particle_charge' 2025-09-08T10:02:42,132 Error compiling Cython file: 2025-09-08T10:02:42,132 ------------------------------------------------------------ 2025-09-08T10:02:42,132 ... 2025-09-08T10:02:42,132 assert(forces.shape[1] == 3) 2025-09-08T10:02:42,132 cdef num_ptcls 2025-09-08T10:02:42,133 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,133 ccoldatoms_lib.ca_harmonic_trap_forces( 2025-09-08T10:02:42,133 ^ 2025-09-08T10:02:42,133 ------------------------------------------------------------ 2025-09-08T10:02:42,133 src/coldatoms_lib/coldatoms_lib.pyx:53:18: cimported module has no attribute 'ca_harmonic_trap_forces' 2025-09-08T10:02:42,135 Error compiling Cython file: 2025-09-08T10:02:42,135 ------------------------------------------------------------ 2025-09-08T10:02:42,135 ... 2025-09-08T10:02:42,135 assert(forces.shape[1] == 3) 2025-09-08T10:02:42,135 cdef num_ptcls 2025-09-08T10:02:42,135 num_ptcls = positions.shape[0] 2025-09-08T10:02:42,135 ccoldatoms_lib.ca_harmonic_trap_forces_per_particle_charge( 2025-09-08T10:02:42,135 ^ 2025-09-08T10:02:42,135 ------------------------------------------------------------ 2025-09-08T10:02:42,136 src/coldatoms_lib/coldatoms_lib.pyx:72:18: cimported module has no attribute 'ca_harmonic_trap_forces_per_particle_charge' 2025-09-08T10:02:42,136 Error compiling Cython file: 2025-09-08T10:02:42,136 ------------------------------------------------------------ 2025-09-08T10:02:42,136 ... 2025-09-08T10:02:42,136 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:42,136 cdef num_ptcls 2025-09-08T10:02:42,136 num_ptcls = x.shape[0] 2025-09-08T10:02:42,137 ccoldatoms_lib.ca_bend_kick_update_scalar( 2025-09-08T10:02:42,137 ^ 2025-09-08T10:02:42,137 ------------------------------------------------------------ 2025-09-08T10:02:42,137 src/coldatoms_lib/coldatoms_lib.pyx:86:18: cimported module has no attribute 'ca_bend_kick_update_scalar' 2025-09-08T10:02:42,137 Error compiling Cython file: 2025-09-08T10:02:42,137 ------------------------------------------------------------ 2025-09-08T10:02:42,137 ... 2025-09-08T10:02:42,137 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:42,138 cdef num_ptcls 2025-09-08T10:02:42,138 num_ptcls = x.shape[0] 2025-09-08T10:02:42,138 ccoldatoms_lib.ca_bend_kick_update_vector( 2025-09-08T10:02:42,138 ^ 2025-09-08T10:02:42,138 ------------------------------------------------------------ 2025-09-08T10:02:42,138 src/coldatoms_lib/coldatoms_lib.pyx:101:18: cimported module has no attribute 'ca_bend_kick_update_vector' 2025-09-08T10:02:42,139 Error compiling Cython file: 2025-09-08T10:02:42,139 ------------------------------------------------------------ 2025-09-08T10:02:42,139 ... 2025-09-08T10:02:42,139 def context(self): 2025-09-08T10:02:42,140 return self._generator 2025-09-08T10:02:42,140 def __cinit__(self, seed=None): 2025-09-08T10:02:42,140 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:42,140 ^ 2025-09-08T10:02:42,140 ------------------------------------------------------------ 2025-09-08T10:02:42,140 src/coldatoms_lib/coldatoms_lib.pyx:120:40: cimported module has no attribute 'ca_rand_create' 2025-09-08T10:02:42,140 Error compiling Cython file: 2025-09-08T10:02:42,141 ------------------------------------------------------------ 2025-09-08T10:02:42,141 ... 2025-09-08T10:02:42,141 return self._generator 2025-09-08T10:02:42,141 def __cinit__(self, seed=None): 2025-09-08T10:02:42,141 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:42,141 if seed is not None: 2025-09-08T10:02:42,141 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,141 ^ 2025-09-08T10:02:42,141 ------------------------------------------------------------ 2025-09-08T10:02:42,141 src/coldatoms_lib/coldatoms_lib.pyx:122:26: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:42,142 Error compiling Cython file: 2025-09-08T10:02:42,142 ------------------------------------------------------------ 2025-09-08T10:02:42,142 ... 2025-09-08T10:02:42,142 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:42,142 if seed is not None: 2025-09-08T10:02:42,142 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,142 def __dealloc__(self): 2025-09-08T10:02:42,142 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:42,142 ^ 2025-09-08T10:02:42,143 ------------------------------------------------------------ 2025-09-08T10:02:42,143 src/coldatoms_lib/coldatoms_lib.pyx:125:22: cimported module has no attribute 'ca_rand_destroy' 2025-09-08T10:02:42,143 Error compiling Cython file: 2025-09-08T10:02:42,143 ------------------------------------------------------------ 2025-09-08T10:02:42,143 ... 2025-09-08T10:02:42,143 def __dealloc__(self): 2025-09-08T10:02:42,143 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:42,143 def seed(self, unsigned int seed): 2025-09-08T10:02:42,144 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,144 ^ 2025-09-08T10:02:42,144 ------------------------------------------------------------ 2025-09-08T10:02:42,144 src/coldatoms_lib/coldatoms_lib.pyx:128:22: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:42,144 Error compiling Cython file: 2025-09-08T10:02:42,144 ------------------------------------------------------------ 2025-09-08T10:02:42,144 ... 2025-09-08T10:02:42,144 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:42,145 def fill(self, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:42,145 cdef int n = array.size 2025-09-08T10:02:42,145 cdef double *a = array.data 2025-09-08T10:02:42,145 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:42,145 ^ 2025-09-08T10:02:42,145 ------------------------------------------------------------ 2025-09-08T10:02:42,145 src/coldatoms_lib/coldatoms_lib.pyx:133:22: cimported module has no attribute 'ca_rand' 2025-09-08T10:02:42,145 Error compiling Cython file: 2025-09-08T10:02:42,145 ------------------------------------------------------------ 2025-09-08T10:02:42,146 ... 2025-09-08T10:02:42,146 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:42,146 def fill_gaussian(self, double mean, double std, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:42,146 cdef int n = array.size 2025-09-08T10:02:42,146 cdef double *a = array.data 2025-09-08T10:02:42,146 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:42,146 ^ 2025-09-08T10:02:42,146 ------------------------------------------------------------ 2025-09-08T10:02:42,146 src/coldatoms_lib/coldatoms_lib.pyx:138:22: cimported module has no attribute 'ca_rand_gaussian' 2025-09-08T10:02:42,147 Error compiling Cython file: 2025-09-08T10:02:42,147 ------------------------------------------------------------ 2025-09-08T10:02:42,147 ... 2025-09-08T10:02:42,147 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:42,147 def fill_poisson(self, double nbar, np.ndarray[int, mode="c"] array): 2025-09-08T10:02:42,147 cdef int n = array.size 2025-09-08T10:02:42,147 cdef int *a = array.data 2025-09-08T10:02:42,147 ccoldatoms_lib.ca_rand_poisson(self._generator, n, nbar, a) 2025-09-08T10:02:42,147 ^ 2025-09-08T10:02:42,147 ------------------------------------------------------------ 2025-09-08T10:02:42,148 src/coldatoms_lib/coldatoms_lib.pyx:143:22: cimported module has no attribute 'ca_rand_poisson' 2025-09-08T10:02:42,148 Error compiling Cython file: 2025-09-08T10:02:42,148 ------------------------------------------------------------ 2025-09-08T10:02:42,148 ... 2025-09-08T10:02:42,148 assert(delta.shape[0] == nbar.shape[0]) 2025-09-08T10:02:42,148 cdef num_ptcls 2025-09-08T10:02:42,148 num_ptcls = nbar.shape[0] 2025-09-08T10:02:42,149 ccoldatoms_lib.ca_compute_nbars(num_ptcls, dt, gamma, &s_of_r[0], &delta[0], &nbar[0]) 2025-09-08T10:02:42,149 ^ 2025-09-08T10:02:42,149 ------------------------------------------------------------ 2025-09-08T10:02:42,149 src/coldatoms_lib/coldatoms_lib.pyx:162:18: cimported module has no attribute 'ca_compute_nbars' 2025-09-08T10:02:42,149 Error compiling Cython file: 2025-09-08T10:02:42,149 ------------------------------------------------------------ 2025-09-08T10:02:42,149 ... 2025-09-08T10:02:42,149 assert(f.shape[1] == 3) 2025-09-08T10:02:42,149 assert(hbar_k.size == 3) 2025-09-08T10:02:42,150 cdef num_ptcls 2025-09-08T10:02:42,150 num_ptcls = nbars.shape[0] 2025-09-08T10:02:42,150 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:42,150 ^ 2025-09-08T10:02:42,150 ------------------------------------------------------------ 2025-09-08T10:02:42,150 src/coldatoms_lib/coldatoms_lib.pyx:175:18: cimported module has no attribute 'ca_add_radiation_pressure' 2025-09-08T10:02:42,150 Error compiling Cython file: 2025-09-08T10:02:42,150 ------------------------------------------------------------ 2025-09-08T10:02:42,151 ... 2025-09-08T10:02:42,151 cdef num_ptcls 2025-09-08T10:02:42,151 num_ptcls = nbars.shape[0] 2025-09-08T10:02:42,151 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:42,151 num_ptcls, 2025-09-08T10:02:42,151 rng_context, 2025-09-08T10:02:42,151 ^ 2025-09-08T10:02:42,151 ------------------------------------------------------------ 2025-09-08T10:02:42,151 src/coldatoms_lib/coldatoms_lib.pyx:177:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:42,174 Traceback (most recent call last): 2025-09-08T10:02:42,177 File "", line 2, in 2025-09-08T10:02:42,178 exec(compile(''' 2025-09-08T10:02:42,178 ~~~~^^^^^^^^^^^^ 2025-09-08T10:02:42,178 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:42,178 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:42,178 ...<32 lines>... 2025-09-08T10:02:42,178 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:42,178 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:42,178 ''' % ('/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py',), "", "exec")) 2025-09-08T10:02:42,178 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:42,179 File "", line 35, in 2025-09-08T10:02:42,179 File "/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py", line 106, in 2025-09-08T10:02:42,179 setup_package() 2025-09-08T10:02:42,179 ~~~~~~~~~~~~~^^ 2025-09-08T10:02:42,179 File "/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py", line 101, in setup_package 2025-09-08T10:02:42,179 metadata.update(get_package_info()) 2025-09-08T10:02:42,179 ~~~~~~~~~~~~~~~~^^ 2025-09-08T10:02:42,179 File "/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py", line 54, in get_package_info 2025-09-08T10:02:42,179 coldatoms_lib = cythonize([Extension( 2025-09-08T10:02:42,180 'coldatoms_lib.coldatoms_lib', 2025-09-08T10:02:42,180 ...<8 lines>... 2025-09-08T10:02:42,180 extra_link_args=extra_link_args 2025-09-08T10:02:42,180 )]) 2025-09-08T10:02:42,180 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T10:02:42,180 cythonize_one(*args) 2025-09-08T10:02:42,180 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T10:02:42,180 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T10:02:42,181 raise CompileError(None, pyx_file) 2025-09-08T10:02:42,181 Cython.Compiler.Errors.CompileError: src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:42,511 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T10:02:42,522 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T10:02:42,522 exec(compile('"'"''"'"''"'"' 2025-09-08T10:02:42,522 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:42,522 # 2025-09-08T10:02:42,522 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T10:02:42,522 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T10:02:42,522 # - It provides a clear error message when setuptools is not installed. 2025-09-08T10:02:42,522 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T10:02:42,522 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T10:02:42,522 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T10:02:42,522 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T10:02:42,522 import os, sys, tokenize, traceback 2025-09-08T10:02:42,522 2025-09-08T10:02:42,522 try: 2025-09-08T10:02:42,522 import setuptools 2025-09-08T10:02:42,522 except ImportError: 2025-09-08T10:02:42,522 print( 2025-09-08T10:02:42,522 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T10:02:42,522 "the build environment with exception:", 2025-09-08T10:02:42,522 file=sys.stderr, 2025-09-08T10:02:42,522 ) 2025-09-08T10:02:42,522 traceback.print_exc() 2025-09-08T10:02:42,522 sys.exit(1) 2025-09-08T10:02:42,522 2025-09-08T10:02:42,522 __file__ = %r 2025-09-08T10:02:42,522 sys.argv[0] = __file__ 2025-09-08T10:02:42,522 2025-09-08T10:02:42,522 if os.path.exists(__file__): 2025-09-08T10:02:42,522 filename = __file__ 2025-09-08T10:02:42,522 with tokenize.open(__file__) as f: 2025-09-08T10:02:42,522 setup_py_code = f.read() 2025-09-08T10:02:42,522 else: 2025-09-08T10:02:42,522 filename = "" 2025-09-08T10:02:42,522 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T10:02:42,522 2025-09-08T10:02:42,522 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:42,522 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-ae8a0am6[/] 2025-09-08T10:02:42,523 [bold magenta]cwd[/]: /tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/ 2025-09-08T10:02:42,523 Building wheel for coldatoms (setup.py): finished with status 'error' 2025-09-08T10:02:42,524 ERROR: Failed building wheel for coldatoms 2025-09-08T10:02:42,524 Running setup.py clean for coldatoms 2025-09-08T10:02:42,525 Running command python setup.py clean 2025-09-08T10:02:43,904 Compiling src/coldatoms_lib/coldatoms_lib.pyx because it changed. 2025-09-08T10:02:43,905 [1/1] Cythonizing src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:45,374 Error compiling Cython file: 2025-09-08T10:02:45,374 ------------------------------------------------------------ 2025-09-08T10:02:45,374 ... 2025-09-08T10:02:45,374 import cython 2025-09-08T10:02:45,374 import numpy as np 2025-09-08T10:02:45,374 cimport numpy as np 2025-09-08T10:02:45,374 cimport ccoldatoms_lib 2025-09-08T10:02:45,374 ^ 2025-09-08T10:02:45,374 ------------------------------------------------------------ 2025-09-08T10:02:45,375 src/coldatoms_lib/coldatoms_lib.pyx:4:8: 'ccoldatoms_lib.pxd' not found 2025-09-08T10:02:45,405 Error compiling Cython file: 2025-09-08T10:02:45,405 ------------------------------------------------------------ 2025-09-08T10:02:45,405 ... 2025-09-08T10:02:45,405 bend_kick_update_vector(dt, omegaB, x, v) 2025-09-08T10:02:45,406 cdef class Rng(object): 2025-09-08T10:02:45,406 cdef ccoldatoms_lib.CARandCtx* _generator 2025-09-08T10:02:45,406 ^ 2025-09-08T10:02:45,406 ------------------------------------------------------------ 2025-09-08T10:02:45,406 src/coldatoms_lib/coldatoms_lib.pyx:114:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:45,468 Error compiling Cython file: 2025-09-08T10:02:45,468 ------------------------------------------------------------ 2025-09-08T10:02:45,468 ... 2025-09-08T10:02:45,468 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:45,469 cdef num_ptcls 2025-09-08T10:02:45,469 num_ptcls = positions.shape[0] 2025-09-08T10:02:45,469 ccoldatoms_lib.ca_coulomb_force( 2025-09-08T10:02:45,469 ^ 2025-09-08T10:02:45,469 ------------------------------------------------------------ 2025-09-08T10:02:45,469 src/coldatoms_lib/coldatoms_lib.pyx:19:18: cimported module has no attribute 'ca_coulomb_force' 2025-09-08T10:02:45,471 Error compiling Cython file: 2025-09-08T10:02:45,471 ------------------------------------------------------------ 2025-09-08T10:02:45,471 ... 2025-09-08T10:02:45,471 np.ndarray[double, ndim=2, mode="c"] forces not None): 2025-09-08T10:02:45,471 cdef num_ptcls 2025-09-08T10:02:45,472 num_ptcls = positions.shape[0] 2025-09-08T10:02:45,472 ccoldatoms_lib.ca_coulomb_force_per_particle_charge( 2025-09-08T10:02:45,472 ^ 2025-09-08T10:02:45,472 ------------------------------------------------------------ 2025-09-08T10:02:45,472 src/coldatoms_lib/coldatoms_lib.pyx:34:18: cimported module has no attribute 'ca_coulomb_force_per_particle_charge' 2025-09-08T10:02:45,475 Error compiling Cython file: 2025-09-08T10:02:45,475 ------------------------------------------------------------ 2025-09-08T10:02:45,475 ... 2025-09-08T10:02:45,475 assert(forces.shape[1] == 3) 2025-09-08T10:02:45,475 cdef num_ptcls 2025-09-08T10:02:45,475 num_ptcls = positions.shape[0] 2025-09-08T10:02:45,476 ccoldatoms_lib.ca_harmonic_trap_forces( 2025-09-08T10:02:45,476 ^ 2025-09-08T10:02:45,476 ------------------------------------------------------------ 2025-09-08T10:02:45,476 src/coldatoms_lib/coldatoms_lib.pyx:53:18: cimported module has no attribute 'ca_harmonic_trap_forces' 2025-09-08T10:02:45,479 Error compiling Cython file: 2025-09-08T10:02:45,479 ------------------------------------------------------------ 2025-09-08T10:02:45,479 ... 2025-09-08T10:02:45,479 assert(forces.shape[1] == 3) 2025-09-08T10:02:45,479 cdef num_ptcls 2025-09-08T10:02:45,479 num_ptcls = positions.shape[0] 2025-09-08T10:02:45,480 ccoldatoms_lib.ca_harmonic_trap_forces_per_particle_charge( 2025-09-08T10:02:45,480 ^ 2025-09-08T10:02:45,480 ------------------------------------------------------------ 2025-09-08T10:02:45,480 src/coldatoms_lib/coldatoms_lib.pyx:72:18: cimported module has no attribute 'ca_harmonic_trap_forces_per_particle_charge' 2025-09-08T10:02:45,482 Error compiling Cython file: 2025-09-08T10:02:45,482 ------------------------------------------------------------ 2025-09-08T10:02:45,482 ... 2025-09-08T10:02:45,482 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:45,482 cdef num_ptcls 2025-09-08T10:02:45,482 num_ptcls = x.shape[0] 2025-09-08T10:02:45,482 ccoldatoms_lib.ca_bend_kick_update_scalar( 2025-09-08T10:02:45,483 ^ 2025-09-08T10:02:45,483 ------------------------------------------------------------ 2025-09-08T10:02:45,483 src/coldatoms_lib/coldatoms_lib.pyx:86:18: cimported module has no attribute 'ca_bend_kick_update_scalar' 2025-09-08T10:02:45,483 Error compiling Cython file: 2025-09-08T10:02:45,483 ------------------------------------------------------------ 2025-09-08T10:02:45,483 ... 2025-09-08T10:02:45,483 np.ndarray[double, ndim=2, mode="c"] v not None): 2025-09-08T10:02:45,484 cdef num_ptcls 2025-09-08T10:02:45,484 num_ptcls = x.shape[0] 2025-09-08T10:02:45,484 ccoldatoms_lib.ca_bend_kick_update_vector( 2025-09-08T10:02:45,484 ^ 2025-09-08T10:02:45,484 ------------------------------------------------------------ 2025-09-08T10:02:45,484 src/coldatoms_lib/coldatoms_lib.pyx:101:18: cimported module has no attribute 'ca_bend_kick_update_vector' 2025-09-08T10:02:45,485 Error compiling Cython file: 2025-09-08T10:02:45,485 ------------------------------------------------------------ 2025-09-08T10:02:45,485 ... 2025-09-08T10:02:45,485 def context(self): 2025-09-08T10:02:45,485 return self._generator 2025-09-08T10:02:45,485 def __cinit__(self, seed=None): 2025-09-08T10:02:45,486 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:45,486 ^ 2025-09-08T10:02:45,486 ------------------------------------------------------------ 2025-09-08T10:02:45,486 src/coldatoms_lib/coldatoms_lib.pyx:120:40: cimported module has no attribute 'ca_rand_create' 2025-09-08T10:02:45,486 Error compiling Cython file: 2025-09-08T10:02:45,486 ------------------------------------------------------------ 2025-09-08T10:02:45,486 ... 2025-09-08T10:02:45,486 return self._generator 2025-09-08T10:02:45,487 def __cinit__(self, seed=None): 2025-09-08T10:02:45,487 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:45,487 if seed is not None: 2025-09-08T10:02:45,487 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:45,487 ^ 2025-09-08T10:02:45,487 ------------------------------------------------------------ 2025-09-08T10:02:45,487 src/coldatoms_lib/coldatoms_lib.pyx:122:26: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:45,487 Error compiling Cython file: 2025-09-08T10:02:45,487 ------------------------------------------------------------ 2025-09-08T10:02:45,488 ... 2025-09-08T10:02:45,488 self._generator = ccoldatoms_lib.ca_rand_create() 2025-09-08T10:02:45,488 if seed is not None: 2025-09-08T10:02:45,488 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:45,488 def __dealloc__(self): 2025-09-08T10:02:45,488 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:45,488 ^ 2025-09-08T10:02:45,488 ------------------------------------------------------------ 2025-09-08T10:02:45,488 src/coldatoms_lib/coldatoms_lib.pyx:125:22: cimported module has no attribute 'ca_rand_destroy' 2025-09-08T10:02:45,489 Error compiling Cython file: 2025-09-08T10:02:45,489 ------------------------------------------------------------ 2025-09-08T10:02:45,489 ... 2025-09-08T10:02:45,489 def __dealloc__(self): 2025-09-08T10:02:45,489 ccoldatoms_lib.ca_rand_destroy(&self._generator) 2025-09-08T10:02:45,489 def seed(self, unsigned int seed): 2025-09-08T10:02:45,489 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:45,489 ^ 2025-09-08T10:02:45,489 ------------------------------------------------------------ 2025-09-08T10:02:45,490 src/coldatoms_lib/coldatoms_lib.pyx:128:22: cimported module has no attribute 'ca_rand_seed' 2025-09-08T10:02:45,490 Error compiling Cython file: 2025-09-08T10:02:45,490 ------------------------------------------------------------ 2025-09-08T10:02:45,490 ... 2025-09-08T10:02:45,490 ccoldatoms_lib.ca_rand_seed(self._generator, seed) 2025-09-08T10:02:45,490 def fill(self, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:45,490 cdef int n = array.size 2025-09-08T10:02:45,491 cdef double *a = array.data 2025-09-08T10:02:45,491 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:45,491 ^ 2025-09-08T10:02:45,491 ------------------------------------------------------------ 2025-09-08T10:02:45,491 src/coldatoms_lib/coldatoms_lib.pyx:133:22: cimported module has no attribute 'ca_rand' 2025-09-08T10:02:45,491 Error compiling Cython file: 2025-09-08T10:02:45,491 ------------------------------------------------------------ 2025-09-08T10:02:45,491 ... 2025-09-08T10:02:45,491 ccoldatoms_lib.ca_rand(self._generator, n, a) 2025-09-08T10:02:45,492 def fill_gaussian(self, double mean, double std, np.ndarray[double, mode="c"] array): 2025-09-08T10:02:45,492 cdef int n = array.size 2025-09-08T10:02:45,492 cdef double *a = array.data 2025-09-08T10:02:45,492 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:45,492 ^ 2025-09-08T10:02:45,492 ------------------------------------------------------------ 2025-09-08T10:02:45,492 src/coldatoms_lib/coldatoms_lib.pyx:138:22: cimported module has no attribute 'ca_rand_gaussian' 2025-09-08T10:02:45,492 Error compiling Cython file: 2025-09-08T10:02:45,492 ------------------------------------------------------------ 2025-09-08T10:02:45,493 ... 2025-09-08T10:02:45,493 ccoldatoms_lib.ca_rand_gaussian(self._generator, n, mean, std, a) 2025-09-08T10:02:45,493 def fill_poisson(self, double nbar, np.ndarray[int, mode="c"] array): 2025-09-08T10:02:45,493 cdef int n = array.size 2025-09-08T10:02:45,493 cdef int *a = array.data 2025-09-08T10:02:45,493 ccoldatoms_lib.ca_rand_poisson(self._generator, n, nbar, a) 2025-09-08T10:02:45,493 ^ 2025-09-08T10:02:45,493 ------------------------------------------------------------ 2025-09-08T10:02:45,493 src/coldatoms_lib/coldatoms_lib.pyx:143:22: cimported module has no attribute 'ca_rand_poisson' 2025-09-08T10:02:45,494 Error compiling Cython file: 2025-09-08T10:02:45,494 ------------------------------------------------------------ 2025-09-08T10:02:45,494 ... 2025-09-08T10:02:45,494 assert(delta.shape[0] == nbar.shape[0]) 2025-09-08T10:02:45,494 cdef num_ptcls 2025-09-08T10:02:45,494 num_ptcls = nbar.shape[0] 2025-09-08T10:02:45,494 ccoldatoms_lib.ca_compute_nbars(num_ptcls, dt, gamma, &s_of_r[0], &delta[0], &nbar[0]) 2025-09-08T10:02:45,494 ^ 2025-09-08T10:02:45,495 ------------------------------------------------------------ 2025-09-08T10:02:45,495 src/coldatoms_lib/coldatoms_lib.pyx:162:18: cimported module has no attribute 'ca_compute_nbars' 2025-09-08T10:02:45,495 Error compiling Cython file: 2025-09-08T10:02:45,495 ------------------------------------------------------------ 2025-09-08T10:02:45,495 ... 2025-09-08T10:02:45,495 assert(f.shape[1] == 3) 2025-09-08T10:02:45,495 assert(hbar_k.size == 3) 2025-09-08T10:02:45,495 cdef num_ptcls 2025-09-08T10:02:45,496 num_ptcls = nbars.shape[0] 2025-09-08T10:02:45,496 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:45,496 ^ 2025-09-08T10:02:45,496 ------------------------------------------------------------ 2025-09-08T10:02:45,496 src/coldatoms_lib/coldatoms_lib.pyx:175:18: cimported module has no attribute 'ca_add_radiation_pressure' 2025-09-08T10:02:45,496 Error compiling Cython file: 2025-09-08T10:02:45,496 ------------------------------------------------------------ 2025-09-08T10:02:45,496 ... 2025-09-08T10:02:45,496 cdef num_ptcls 2025-09-08T10:02:45,497 num_ptcls = nbars.shape[0] 2025-09-08T10:02:45,497 ccoldatoms_lib.ca_add_radiation_pressure( 2025-09-08T10:02:45,497 num_ptcls, 2025-09-08T10:02:45,497 rng_context, 2025-09-08T10:02:45,497 ^ 2025-09-08T10:02:45,497 ------------------------------------------------------------ 2025-09-08T10:02:45,497 src/coldatoms_lib/coldatoms_lib.pyx:177:9: 'CARandCtx' is not a type identifier 2025-09-08T10:02:45,521 Traceback (most recent call last): 2025-09-08T10:02:45,525 File "", line 2, in 2025-09-08T10:02:45,525 exec(compile(''' 2025-09-08T10:02:45,525 ~~~~^^^^^^^^^^^^ 2025-09-08T10:02:45,525 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:45,525 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:45,525 ...<32 lines>... 2025-09-08T10:02:45,525 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:45,525 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:45,526 ''' % ('/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py',), "", "exec")) 2025-09-08T10:02:45,526 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:02:45,526 File "", line 35, in 2025-09-08T10:02:45,526 File "/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py", line 106, in 2025-09-08T10:02:45,526 setup_package() 2025-09-08T10:02:45,526 ~~~~~~~~~~~~~^^ 2025-09-08T10:02:45,526 File "/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py", line 101, in setup_package 2025-09-08T10:02:45,526 metadata.update(get_package_info()) 2025-09-08T10:02:45,527 ~~~~~~~~~~~~~~~~^^ 2025-09-08T10:02:45,527 File "/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py", line 54, in get_package_info 2025-09-08T10:02:45,527 coldatoms_lib = cythonize([Extension( 2025-09-08T10:02:45,527 'coldatoms_lib.coldatoms_lib', 2025-09-08T10:02:45,527 ...<8 lines>... 2025-09-08T10:02:45,527 extra_link_args=extra_link_args 2025-09-08T10:02:45,527 )]) 2025-09-08T10:02:45,527 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T10:02:45,527 cythonize_one(*args) 2025-09-08T10:02:45,528 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T10:02:45,528 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T10:02:45,528 raise CompileError(None, pyx_file) 2025-09-08T10:02:45,528 Cython.Compiler.Errors.CompileError: src/coldatoms_lib/coldatoms_lib.pyx 2025-09-08T10:02:45,857 ERROR: python setup.py clean exited with 1 2025-09-08T10:02:45,862 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T10:02:45,862 exec(compile('"'"''"'"''"'"' 2025-09-08T10:02:45,862 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:02:45,862 # 2025-09-08T10:02:45,862 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T10:02:45,862 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T10:02:45,862 # - It provides a clear error message when setuptools is not installed. 2025-09-08T10:02:45,862 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T10:02:45,862 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T10:02:45,862 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T10:02:45,862 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T10:02:45,862 import os, sys, tokenize, traceback 2025-09-08T10:02:45,862 2025-09-08T10:02:45,862 try: 2025-09-08T10:02:45,862 import setuptools 2025-09-08T10:02:45,862 except ImportError: 2025-09-08T10:02:45,862 print( 2025-09-08T10:02:45,862 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T10:02:45,862 "the build environment with exception:", 2025-09-08T10:02:45,862 file=sys.stderr, 2025-09-08T10:02:45,862 ) 2025-09-08T10:02:45,862 traceback.print_exc() 2025-09-08T10:02:45,862 sys.exit(1) 2025-09-08T10:02:45,862 2025-09-08T10:02:45,862 __file__ = %r 2025-09-08T10:02:45,862 sys.argv[0] = __file__ 2025-09-08T10:02:45,862 2025-09-08T10:02:45,862 if os.path.exists(__file__): 2025-09-08T10:02:45,862 filename = __file__ 2025-09-08T10:02:45,862 with tokenize.open(__file__) as f: 2025-09-08T10:02:45,862 setup_py_code = f.read() 2025-09-08T10:02:45,862 else: 2025-09-08T10:02:45,862 filename = "" 2025-09-08T10:02:45,862 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T10:02:45,862 2025-09-08T10:02:45,862 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:02:45,862 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a/setup.py'"'"',), "", "exec"))' clean --all[/] 2025-09-08T10:02:45,862 [bold magenta]cwd[/]: /tmp/pip-wheel-idi6ax14/coldatoms_e57325955c2d4bd0af00abe21cb0a54a 2025-09-08T10:02:45,862 ERROR: Failed cleaning build dir for coldatoms 2025-09-08T10:02:45,863 Failed to build coldatoms 2025-09-08T10:02:45,864 ERROR: Failed to build one or more wheels 2025-09-08T10:02:45,865 Exception information: 2025-09-08T10:02:45,865 Traceback (most recent call last): 2025-09-08T10:02:45,865 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T10:02:45,865 status = _inner_run() 2025-09-08T10:02:45,865 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T10:02:45,865 return self.run(options, args) 2025-09-08T10:02:45,865 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T10:02:45,865 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T10:02:45,865 return func(self, options, args) 2025-09-08T10:02:45,865 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T10:02:45,865 raise CommandError("Failed to build one or more wheels") 2025-09-08T10:02:45,865 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T10:02:45,869 Removed build tracker: '/tmp/pip-build-tracker-52a82960'