2025-09-08T10:38:09,100 Created temporary directory: /tmp/pip-build-tracker-ayuadjzi 2025-09-08T10:38:09,101 Initialized build tracking at /tmp/pip-build-tracker-ayuadjzi 2025-09-08T10:38:09,101 Created build tracker: /tmp/pip-build-tracker-ayuadjzi 2025-09-08T10:38:09,101 Entered build tracker: /tmp/pip-build-tracker-ayuadjzi 2025-09-08T10:38:09,101 Created temporary directory: /tmp/pip-wheel-tnpg_qtj 2025-09-08T10:38:09,104 Created temporary directory: /tmp/pip-ephem-wheel-cache-uvdm7ct8 2025-09-08T10:38:09,162 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T10:38:09,164 2 location(s) to search for versions of cpinsim: 2025-09-08T10:38:09,164 * https://pypi.org/simple/cpinsim/ 2025-09-08T10:38:09,164 * https://www.piwheels.org/simple/cpinsim/ 2025-09-08T10:38:09,164 Fetching project page and analyzing links: https://pypi.org/simple/cpinsim/ 2025-09-08T10:38:09,165 Getting page https://pypi.org/simple/cpinsim/ 2025-09-08T10:38:09,166 Found index url https://pypi.org/simple/ 2025-09-08T10:38:09,371 Fetched page https://pypi.org/simple/cpinsim/ as application/vnd.pypi.simple.v1+json 2025-09-08T10:38:09,373 Found link https://files.pythonhosted.org/packages/f5/51/2fe29ce06898393129f52520fb6ff3dcb7e68daa9855880fb10f484b121e/cpinsim-0.5.0.zip (from https://pypi.org/simple/cpinsim/), version: 0.5.0 2025-09-08T10:38:09,374 Found link https://files.pythonhosted.org/packages/23/66/f6275a375684d95607ea4b0baf85ae0d29606cd4d7d9204d1baea4869a36/cpinsim-0.5.1.zip (from https://pypi.org/simple/cpinsim/), version: 0.5.1 2025-09-08T10:38:09,374 Found link https://files.pythonhosted.org/packages/bd/f4/a13bff177795f5202dbb560e6102c8031b0110c8a7cf6eb51e153bd9d506/cpinsim-0.5.2.zip (from https://pypi.org/simple/cpinsim/), version: 0.5.2 2025-09-08T10:38:09,375 Fetching project page and analyzing links: https://www.piwheels.org/simple/cpinsim/ 2025-09-08T10:38:09,375 Getting page https://www.piwheels.org/simple/cpinsim/ 2025-09-08T10:38:09,377 Found index url https://www.piwheels.org/simple/ 2025-09-08T10:38:09,478 Fetched page https://www.piwheels.org/simple/cpinsim/ as text/html 2025-09-08T10:38:09,479 Skipping link: No binaries permitted for cpinsim: https://archive1.piwheels.org/simple/cpinsim/cpinsim-0.5.2-py3-none-any.whl#sha256=8594f80d948f27fb0c301b1c14e28145a7a52de9e632c951679e735a353d3d53 (from https://www.piwheels.org/simple/cpinsim/) 2025-09-08T10:38:09,480 Skipping link: not a file: https://www.piwheels.org/simple/cpinsim/ 2025-09-08T10:38:09,480 Skipping link: not a file: https://pypi.org/simple/cpinsim/ 2025-09-08T10:38:09,508 Given no hashes to check 1 links for project 'cpinsim': discarding no candidates 2025-09-08T10:38:09,508 Collecting cpinsim==0.5.0 2025-09-08T10:38:09,510 Created temporary directory: /tmp/pip-unpack-4fg4v_du 2025-09-08T10:38:09,708 Downloading cpinsim-0.5.0.zip (25 kB) 2025-09-08T10:38:09,735 Added cpinsim==0.5.0 from https://files.pythonhosted.org/packages/f5/51/2fe29ce06898393129f52520fb6ff3dcb7e68daa9855880fb10f484b121e/cpinsim-0.5.0.zip to build tracker '/tmp/pip-build-tracker-ayuadjzi' 2025-09-08T10:38:09,736 Running setup.py (path:/tmp/pip-wheel-tnpg_qtj/cpinsim_fe7d5b8ec31748d4b53b004eeec6d38f/setup.py) egg_info for package cpinsim 2025-09-08T10:38:09,736 Created temporary directory: /tmp/pip-pip-egg-info-5_hbcdby 2025-09-08T10:38:09,737 Preparing metadata (setup.py): started 2025-09-08T10:38:09,737 Running command python setup.py egg_info 2025-09-08T10:38:10,287 Traceback (most recent call last): 2025-09-08T10:38:10,288 File "", line 2, in 2025-09-08T10:38:10,288 exec(compile(''' 2025-09-08T10:38:10,288 ~~~~^^^^^^^^^^^^ 2025-09-08T10:38:10,289 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:38:10,289 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,289 ...<32 lines>... 2025-09-08T10:38:10,289 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:38:10,289 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,289 ''' % ('/tmp/pip-wheel-tnpg_qtj/cpinsim_fe7d5b8ec31748d4b53b004eeec6d38f/setup.py',), "", "exec")) 2025-09-08T10:38:10,289 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,289 File "", line 35, in 2025-09-08T10:38:10,290 File "/tmp/pip-wheel-tnpg_qtj/cpinsim_fe7d5b8ec31748d4b53b004eeec6d38f/setup.py", line 5, in 2025-09-08T10:38:10,290 from cpinsim import __version__ 2025-09-08T10:38:10,290 File "/tmp/pip-wheel-tnpg_qtj/cpinsim_fe7d5b8ec31748d4b53b004eeec6d38f/cpinsim/__init__.py", line 7, in 2025-09-08T10:38:10,290 import cpinsim.protein_type as protein_type 2025-09-08T10:38:10,290 File "/tmp/pip-wheel-tnpg_qtj/cpinsim_fe7d5b8ec31748d4b53b004eeec6d38f/cpinsim/protein_type.py", line 5, in 2025-09-08T10:38:10,290 from bitarray import bitarray 2025-09-08T10:38:10,290 ModuleNotFoundError: No module named 'bitarray' 2025-09-08T10:38:10,375 ERROR: python setup.py egg_info exited with 1 2025-09-08T10:38:10,387 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T10:38:10,387 exec(compile('"'"''"'"''"'"' 2025-09-08T10:38:10,387 # This is -- a caller that pip uses to run setup.py 2025-09-08T10:38:10,387 # 2025-09-08T10:38:10,387 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T10:38:10,387 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T10:38:10,387 # - It provides a clear error message when setuptools is not installed. 2025-09-08T10:38:10,387 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T10:38:10,387 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T10:38:10,387 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T10:38:10,387 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T10:38:10,387 import os, sys, tokenize, traceback 2025-09-08T10:38:10,387 2025-09-08T10:38:10,387 try: 2025-09-08T10:38:10,387 import setuptools 2025-09-08T10:38:10,387 except ImportError: 2025-09-08T10:38:10,387 print( 2025-09-08T10:38:10,387 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T10:38:10,387 "the build environment with exception:", 2025-09-08T10:38:10,387 file=sys.stderr, 2025-09-08T10:38:10,387 ) 2025-09-08T10:38:10,387 traceback.print_exc() 2025-09-08T10:38:10,387 sys.exit(1) 2025-09-08T10:38:10,387 2025-09-08T10:38:10,387 __file__ = %r 2025-09-08T10:38:10,387 sys.argv[0] = __file__ 2025-09-08T10:38:10,387 2025-09-08T10:38:10,387 if os.path.exists(__file__): 2025-09-08T10:38:10,387 filename = __file__ 2025-09-08T10:38:10,387 with tokenize.open(__file__) as f: 2025-09-08T10:38:10,387 setup_py_code = f.read() 2025-09-08T10:38:10,387 else: 2025-09-08T10:38:10,387 filename = "" 2025-09-08T10:38:10,387 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T10:38:10,387 2025-09-08T10:38:10,387 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T10:38:10,387 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-tnpg_qtj/cpinsim_fe7d5b8ec31748d4b53b004eeec6d38f/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-5_hbcdby[/] 2025-09-08T10:38:10,387 [bold magenta]cwd[/]: /tmp/pip-wheel-tnpg_qtj/cpinsim_fe7d5b8ec31748d4b53b004eeec6d38f/ 2025-09-08T10:38:10,388 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T10:38:10,388 ERROR: metadata generation failed 2025-09-08T10:38:10,393 Exception information: 2025-09-08T10:38:10,393 Traceback (most recent call last): 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T10:38:10,393 call_subprocess( 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~~~^ 2025-09-08T10:38:10,393 args, 2025-09-08T10:38:10,393 ^^^^^ 2025-09-08T10:38:10,393 ...<2 lines>... 2025-09-08T10:38:10,393 spinner=spinner, 2025-09-08T10:38:10,393 ^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 ) 2025-09-08T10:38:10,393 ^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T10:38:10,393 raise error 2025-09-08T10:38:10,393 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T10:38:10,393 2025-09-08T10:38:10,393 The above exception was the direct cause of the following exception: 2025-09-08T10:38:10,393 2025-09-08T10:38:10,393 Traceback (most recent call last): 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T10:38:10,393 status = _inner_run() 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T10:38:10,393 return self.run(options, args) 2025-09-08T10:38:10,393 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T10:38:10,393 return func(self, options, args) 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T10:38:10,393 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T10:38:10,393 result = self._result = resolver.resolve( 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~~~~^ 2025-09-08T10:38:10,393 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T10:38:10,393 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 ) 2025-09-08T10:38:10,393 ^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T10:38:10,393 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T10:38:10,393 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T10:38:10,393 if not criterion.candidates: 2025-09-08T10:38:10,393 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T10:38:10,393 return bool(self._sequence) 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T10:38:10,393 self._bool = any(self) 2025-09-08T10:38:10,393 ~~~^^^^^^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T10:38:10,393 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T10:38:10,393 ^^^^^^^^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T10:38:10,393 candidate = func() 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T10:38:10,393 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T10:38:10,393 link, template, name, version 2025-09-08T10:38:10,393 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 ) 2025-09-08T10:38:10,393 ^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T10:38:10,393 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~^ 2025-09-08T10:38:10,393 link, 2025-09-08T10:38:10,393 ^^^^^ 2025-09-08T10:38:10,393 ...<3 lines>... 2025-09-08T10:38:10,393 version=version, 2025-09-08T10:38:10,393 ^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 ) 2025-09-08T10:38:10,393 ^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T10:38:10,393 super().__init__( 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~~~~^ 2025-09-08T10:38:10,393 link=link, 2025-09-08T10:38:10,393 ^^^^^^^^^^ 2025-09-08T10:38:10,393 ...<4 lines>... 2025-09-08T10:38:10,393 version=version, 2025-09-08T10:38:10,393 ^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 ) 2025-09-08T10:38:10,393 ^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T10:38:10,393 self.dist = self._prepare() 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~^^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T10:38:10,393 dist = self._prepare_distribution() 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T10:38:10,393 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T10:38:10,393 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T10:38:10,393 dist = _get_prepared_distribution( 2025-09-08T10:38:10,393 req, 2025-09-08T10:38:10,393 ...<3 lines>... 2025-09-08T10:38:10,393 self.check_build_deps, 2025-09-08T10:38:10,393 ) 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T10:38:10,393 abstract_dist.prepare_distribution_metadata( 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T10:38:10,393 finder, build_isolation, check_build_deps 2025-09-08T10:38:10,393 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 ) 2025-09-08T10:38:10,393 ^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T10:38:10,393 self.req.prepare_metadata() 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T10:38:10,393 self.metadata_directory = generate_metadata_legacy( 2025-09-08T10:38:10,393 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T10:38:10,393 build_env=self.build_env, 2025-09-08T10:38:10,393 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 ...<3 lines>... 2025-09-08T10:38:10,393 details=details, 2025-09-08T10:38:10,393 ^^^^^^^^^^^^^^^^ 2025-09-08T10:38:10,393 ) 2025-09-08T10:38:10,393 ^ 2025-09-08T10:38:10,393 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T10:38:10,393 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T10:38:10,393 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T10:38:10,416 Removed cpinsim==0.5.0 from https://files.pythonhosted.org/packages/f5/51/2fe29ce06898393129f52520fb6ff3dcb7e68daa9855880fb10f484b121e/cpinsim-0.5.0.zip from build tracker '/tmp/pip-build-tracker-ayuadjzi' 2025-09-08T10:38:10,416 Removed build tracker: '/tmp/pip-build-tracker-ayuadjzi'