2025-09-08T10:41:57,749 Created temporary directory: /tmp/pip-build-tracker-fs381_xp 2025-09-08T10:41:57,749 Initialized build tracking at /tmp/pip-build-tracker-fs381_xp 2025-09-08T10:41:57,749 Created build tracker: /tmp/pip-build-tracker-fs381_xp 2025-09-08T10:41:57,749 Entered build tracker: /tmp/pip-build-tracker-fs381_xp 2025-09-08T10:41:57,750 Created temporary directory: /tmp/pip-wheel-vil3fts6 2025-09-08T10:41:57,753 Created temporary directory: /tmp/pip-ephem-wheel-cache-norjnjch 2025-09-08T10:41:57,810 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T10:41:57,813 2 location(s) to search for versions of mikado: 2025-09-08T10:41:57,813 * https://pypi.org/simple/mikado/ 2025-09-08T10:41:57,813 * https://www.piwheels.org/simple/mikado/ 2025-09-08T10:41:57,813 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2025-09-08T10:41:57,813 Getting page https://pypi.org/simple/mikado/ 2025-09-08T10:41:57,814 Found index url https://pypi.org/simple/ 2025-09-08T10:41:57,886 Fetched page https://pypi.org/simple/mikado/ as application/vnd.pypi.simple.v1+json 2025-09-08T10:41:57,890 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2025-09-08T10:41:57,890 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2025-09-08T10:41:57,891 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2025-09-08T10:41:57,891 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0 2025-09-08T10:41:57,891 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.1 2025-09-08T10:41:57,891 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2 2025-09-08T10:41:57,892 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.1 2025-09-08T10:41:57,892 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.2 2025-09-08T10:41:57,892 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/mikado/) 2025-09-08T10:41:57,892 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.4 2025-09-08T10:41:57,892 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc1 2025-09-08T10:41:57,893 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc2 2025-09-08T10:41:57,893 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2025-09-08T10:41:57,894 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2025-09-08T10:41:57,894 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2025-09-08T10:41:57,894 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2025-09-08T10:41:57,894 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2025-09-08T10:41:57,895 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2025-09-08T10:41:57,895 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2025-09-08T10:41:57,895 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2025-09-08T10:41:57,895 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2025-09-08T10:41:57,896 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2025-09-08T10:41:57,896 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2025-09-08T10:41:57,896 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2025-09-08T10:41:57,896 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2025-09-08T10:41:57,897 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2025-09-08T10:41:57,897 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2025-09-08T10:41:57,897 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2025-09-08T10:41:57,898 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2025-09-08T10:41:57,898 Getting page https://www.piwheels.org/simple/mikado/ 2025-09-08T10:41:57,899 Found index url https://www.piwheels.org/simple/ 2025-09-08T10:41:57,995 Fetched page https://www.piwheels.org/simple/mikado/ as text/html 2025-09-08T10:41:58,027 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,027 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,027 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,028 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,028 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,028 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,028 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,028 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,028 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,029 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,029 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,029 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,029 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,029 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,029 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,029 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,030 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,030 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,030 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,030 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,030 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,030 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv6l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv7l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv6l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv7l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T10:41:58,031 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.3-cp37-cp37m-linux_armv6l.whl#sha256=0ca20e373c9e6bb78e52fcc63bd76ce297019dc0398a342552de37e05393ec0d (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.3-cp37-cp37m-linux_armv7l.whl#sha256=0ca20e373c9e6bb78e52fcc63bd76ce297019dc0398a342552de37e05393ec0d (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.3-cp39-cp39-linux_armv6l.whl#sha256=6ab7b92ed4d7a2e550425206bf76466c2a06204965e72e2a037d0619c1176c17 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.3-cp39-cp39-linux_armv7l.whl#sha256=6ab7b92ed4d7a2e550425206bf76466c2a06204965e72e2a037d0619c1176c17 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.2-cp37-cp37m-linux_armv6l.whl#sha256=54e4cff71242ce161025563618f5de554b9850f22a3ce8a78e500862c0b2a540 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.2-cp37-cp37m-linux_armv7l.whl#sha256=54e4cff71242ce161025563618f5de554b9850f22a3ce8a78e500862c0b2a540 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,032 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.2-cp39-cp39-linux_armv6l.whl#sha256=18d61b880f9e7c86198a1c220aae05e9fbd56142e74ddc764e4d81dbacbd4262 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,032 Skipping link: No binaries permitted for mikado: 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https://archive1.piwheels.org/simple/mikado/Mikado-2.2.1-cp39-cp39-linux_armv6l.whl#sha256=9e52828b40718524193ce4980512a419424cc7d9c9b9cb878e1cfde9c1632be4 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,033 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.1-cp39-cp39-linux_armv7l.whl#sha256=9e52828b40718524193ce4980512a419424cc7d9c9b9cb878e1cfde9c1632be4 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,033 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp37-cp37m-linux_armv6l.whl#sha256=b280f5816066e0f347dc78973f3dba49da227f44894dd596e0d1d8b968232fe7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,033 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp37-cp37m-linux_armv7l.whl#sha256=b280f5816066e0f347dc78973f3dba49da227f44894dd596e0d1d8b968232fe7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp39-cp39-linux_armv6l.whl#sha256=a037ee8af5e543296153555c58e9d0ccd04adf06ebcd075b18ce38e5d6b8d676 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp39-cp39-linux_armv7l.whl#sha256=a037ee8af5e543296153555c58e9d0ccd04adf06ebcd075b18ce38e5d6b8d676 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.1-cp37-cp37m-linux_armv6l.whl#sha256=e093885a6c7fe5089e2e326c23cdbfc9ab107892b45fc5c52c93f79679a4ae36 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.1-cp37-cp37m-linux_armv7l.whl#sha256=e093885a6c7fe5089e2e326c23cdbfc9ab107892b45fc5c52c93f79679a4ae36 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.1-cp39-cp39-linux_armv6l.whl#sha256=61e184cd3ae19e270db7a5e664830fc57ce3b8a2ce8029fe4f3e155e69861958 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.1-cp39-cp39-linux_armv7l.whl#sha256=61e184cd3ae19e270db7a5e664830fc57ce3b8a2ce8029fe4f3e155e69861958 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,034 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=be778cd02475c39684cfb175ac30600fee5c7512e3bd5272662fef6a9b28da73 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=be778cd02475c39684cfb175ac30600fee5c7512e3bd5272662fef6a9b28da73 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=352b6d95b4ec9833a56b875166ebc51e217328dd6ee9d2740c8931ec1a1f5264 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=352b6d95b4ec9833a56b875166ebc51e217328dd6ee9d2740c8931ec1a1f5264 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp37-cp37m-linux_armv6l.whl#sha256=2f415150126f13a761de3741431aeeeedc7de2714bf481b1082993ad77d07529 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp37-cp37m-linux_armv7l.whl#sha256=2f415150126f13a761de3741431aeeeedc7de2714bf481b1082993ad77d07529 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=d470f2f06b5088be5229fff70d2f2453c550acccfed8693854613b383c3c2ceb (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,035 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=d470f2f06b5088be5229fff70d2f2453c550acccfed8693854613b383c3c2ceb (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,036 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=aa58f4246ed233041f1947ffec596fd5ddb6bd53113d31be9b6e2c82d87a3554 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,036 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=aa58f4246ed233041f1947ffec596fd5ddb6bd53113d31be9b6e2c82d87a3554 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,036 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=650d6cccd0d2d54620080fd88477dcf0ecefa34f7f65887febc654a9daee6938 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,036 Skipping link: No binaries permitted for mikado: 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https://archive1.piwheels.org/simple/mikado/Mikado-2.0-cp39-cp39-linux_armv6l.whl#sha256=399cb00521dc1062b7b0535806775c86408f5775694ca44fe7d9a16d1c7fea93 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0-cp39-cp39-linux_armv7l.whl#sha256=399cb00521dc1062b7b0535806775c86408f5775694ca44fe7d9a16d1c7fea93 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T10:41:58,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc2-cp35-cp35m-linux_armv7l.whl#sha256=88943d4573209fd7d3a4b821cb8f94e1343b4eafa6afaf34ac17961eb43b1dff (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc2-cp35-cp35m-linux_armv6l.whl#sha256=88943d4573209fd7d3a4b821cb8f94e1343b4eafa6afaf34ac17961eb43b1dff (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc2-cp37-cp37m-linux_armv7l.whl#sha256=f33058d38476176600e2e3cfdbbb028e98d0f62fa1bc7513f0e74bf6fc9668c1 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc2-cp37-cp37m-linux_armv6l.whl#sha256=f33058d38476176600e2e3cfdbbb028e98d0f62fa1bc7513f0e74bf6fc9668c1 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc2-cp39-cp39-linux_armv6l.whl#sha256=27d920e52482eb28c4c4915cd13022c57b6a2e9b24ab9cbb9c6fb84a57c86006 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,037 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc2-cp39-cp39-linux_armv7l.whl#sha256=27d920e52482eb28c4c4915cd13022c57b6a2e9b24ab9cbb9c6fb84a57c86006 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp35-cp35m-linux_armv6l.whl#sha256=f0c146400dbcde6c6b2b4691d3519ee99863e2f9a5a53473bb658567431c4e58 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp35-cp35m-linux_armv7l.whl#sha256=f0c146400dbcde6c6b2b4691d3519ee99863e2f9a5a53473bb658567431c4e58 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp37-cp37m-linux_armv6l.whl#sha256=4c7691d7cd8ce61164a13e3da86b2d4637c36014b90f25216924a8b9f07290cc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp37-cp37m-linux_armv7l.whl#sha256=4c7691d7cd8ce61164a13e3da86b2d4637c36014b90f25216924a8b9f07290cc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp39-cp39-linux_armv6l.whl#sha256=91ac0dfdc5145f7ac98064d92c6cc7a27c9737695bee341d5ccd4dd84778da0a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp39-cp39-linux_armv7l.whl#sha256=91ac0dfdc5145f7ac98064d92c6cc7a27c9737695bee341d5ccd4dd84778da0a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,038 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,039 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,039 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv7l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,039 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,039 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv7l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,039 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv6l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,039 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp311-cp311-linux_armv6l.whl#sha256=f046bdaea4a2cf6889ea15964c360551b58427311379d68e8d438b673e4f4d97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,039 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp311-cp311-linux_armv7l.whl#sha256=f046bdaea4a2cf6889ea15964c360551b58427311379d68e8d438b673e4f4d97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,040 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,040 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv7l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,040 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,040 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,040 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp311-cp311-linux_armv6l.whl#sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,040 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp311-cp311-linux_armv7l.whl#sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,040 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,041 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,041 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,041 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,041 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,041 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,041 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv6l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,041 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv7l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,042 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv7l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,042 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,042 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv6l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,042 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv7l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,042 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,042 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv7l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,042 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv6l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,043 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv7l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,043 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp39-cp39-linux_armv6l.whl#sha256=dfcb87da8afbf3806c9ba6ac00eb3fcc32717eecd66839e3981624e0c83102b9 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,043 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp39-cp39-linux_armv7l.whl#sha256=dfcb87da8afbf3806c9ba6ac00eb3fcc32717eecd66839e3981624e0c83102b9 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,043 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv6l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,043 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv7l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,043 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv6l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,043 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv7l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,044 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv6l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,044 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv7l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,044 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv7l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,044 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv6l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,044 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv6l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,044 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv7l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,045 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0-cp313-cp313-linux_armv6l.whl#sha256=7b05ef72b23835adf1757bbd0efb0cd8d5f5e3f9b505e72a913aef68936edead (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,045 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0-cp313-cp313-linux_armv7l.whl#sha256=7b05ef72b23835adf1757bbd0efb0cd8d5f5e3f9b505e72a913aef68936edead (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,045 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,045 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,045 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv6l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,045 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,045 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b10-cp313-cp313-linux_armv6l.whl#sha256=ffea753ff371f991add460bcf1ac33f764f959d104fbcee732e221437348aa03 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,046 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b10-cp313-cp313-linux_armv7l.whl#sha256=ffea753ff371f991add460bcf1ac33f764f959d104fbcee732e221437348aa03 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,046 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,046 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,046 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,047 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,047 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,047 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,047 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,047 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv6l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,047 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv7l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,047 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b5.post1-cp313-cp313-linux_armv6l.whl#sha256=a484381081c56e7106e45ed0d641845f6c7386588a9564360e66d4259c2a30c2 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,048 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b5.post1-cp313-cp313-linux_armv7l.whl#sha256=a484381081c56e7106e45ed0d641845f6c7386588a9564360e66d4259c2a30c2 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T10:41:58,048 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2025-09-08T10:41:58,048 Skipping link: not a file: https://pypi.org/simple/mikado/ 2025-09-08T10:41:58,071 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2025-09-08T10:41:58,073 Collecting mikado==1.1 2025-09-08T10:41:58,074 Created temporary directory: /tmp/pip-unpack-sqpeeqh4 2025-09-08T10:41:58,625 Downloading Mikado-1.1.tar.gz (17.5 MB) 2025-09-08T10:42:02,068 Added mikado==1.1 from https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz to build tracker '/tmp/pip-build-tracker-fs381_xp' 2025-09-08T10:42:02,069 Running setup.py (path:/tmp/pip-wheel-vil3fts6/mikado_bdcfd991f0584f6ab157265c40f6c86e/setup.py) egg_info for package mikado 2025-09-08T10:42:02,069 Created temporary directory: /tmp/pip-pip-egg-info-qiqb0_e8 2025-09-08T10:42:02,070 Preparing metadata (setup.py): started 2025-09-08T10:42:02,070 Running command python setup.py egg_info 2025-09-08T10:42:05,278 Compiling Mikado/utilities/overlap.pyx because it changed. 2025-09-08T10:42:05,278 Compiling Mikado/scales/f1.pyx because it changed. 2025-09-08T10:42:05,278 Compiling Mikado/scales/contrast.pyx because it changed. 2025-09-08T10:42:05,278 Compiling Mikado/utilities/intervaltree.pyx because it changed. 2025-09-08T10:42:05,278 [1/4] Cythonizing Mikado/scales/contrast.pyx 2025-09-08T10:42:05,278 [2/4] Cythonizing Mikado/scales/f1.pyx 2025-09-08T10:42:05,278 [3/4] Cythonizing Mikado/utilities/intervaltree.pyx 2025-09-08T10:42:05,278 [4/4] Cythonizing Mikado/utilities/overlap.pyx 2025-09-08T10:42:05,458 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T10:42:05,458 warnings.warn(msg) 2025-09-08T10:42:05,687 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T10:42:05,687 !! 2025-09-08T10:42:05,687 ******************************************************************************** 2025-09-08T10:42:05,688 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T10:42:05,688 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-09-08T10:42:05,688 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T10:42:05,688 ******************************************************************************** 2025-09-08T10:42:05,688 !! 2025-09-08T10:42:05,688 self._finalize_license_expression() 2025-09-08T10:42:05,763 running egg_info 2025-09-08T10:42:05,840 creating /tmp/pip-pip-egg-info-qiqb0_e8/Mikado.egg-info 2025-09-08T10:42:05,841 writing /tmp/pip-pip-egg-info-qiqb0_e8/Mikado.egg-info/PKG-INFO 2025-09-08T10:42:05,844 writing dependency_links to /tmp/pip-pip-egg-info-qiqb0_e8/Mikado.egg-info/dependency_links.txt 2025-09-08T10:42:05,845 writing entry points to /tmp/pip-pip-egg-info-qiqb0_e8/Mikado.egg-info/entry_points.txt 2025-09-08T10:42:05,847 writing requirements to /tmp/pip-pip-egg-info-qiqb0_e8/Mikado.egg-info/requires.txt 2025-09-08T10:42:05,848 writing top-level names to /tmp/pip-pip-egg-info-qiqb0_e8/Mikado.egg-info/top_level.txt 2025-09-08T10:42:05,848 writing manifest file '/tmp/pip-pip-egg-info-qiqb0_e8/Mikado.egg-info/SOURCES.txt' 2025-09-08T10:42:06,239 reading manifest file '/tmp/pip-pip-egg-info-qiqb0_e8/Mikado.egg-info/SOURCES.txt' 2025-09-08T10:42:06,239 reading manifest template 'MANIFEST.in' 2025-09-08T10:42:06,347 warning: no previously-included files matching '*' found under directory 'docs' 2025-09-08T10:42:06,347 adding license file 'AUTHORS' 2025-09-08T10:42:06,369 writing manifest file '/tmp/pip-pip-egg-info-qiqb0_e8/Mikado.egg-info/SOURCES.txt' 2025-09-08T10:42:06,684 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T10:42:06,689 Source in /tmp/pip-wheel-vil3fts6/mikado_bdcfd991f0584f6ab157265c40f6c86e has version 1.1, which satisfies requirement mikado==1.1 from https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz 2025-09-08T10:42:06,689 Removed mikado==1.1 from https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz from build tracker '/tmp/pip-build-tracker-fs381_xp' 2025-09-08T10:42:06,700 Created temporary directory: /tmp/pip-unpack-e3o4oku5 2025-09-08T10:42:06,701 Created temporary directory: /tmp/pip-unpack-t_xi2nnt 2025-09-08T10:42:06,701 Building wheels for collected packages: mikado 2025-09-08T10:42:06,702 Created temporary directory: /tmp/pip-wheel-167k4fnb 2025-09-08T10:42:06,703 DEPRECATION: Building 'mikado' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'mikado'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T10:42:06,704 Building wheel for mikado (setup.py): started 2025-09-08T10:42:06,705 Destination directory: /tmp/pip-wheel-167k4fnb 2025-09-08T10:42:06,705 Running command python setup.py bdist_wheel 2025-09-08T10:42:07,922 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T10:42:07,922 warnings.warn(msg) 2025-09-08T10:42:08,147 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T10:42:08,147 !! 2025-09-08T10:42:08,148 ******************************************************************************** 2025-09-08T10:42:08,148 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T10:42:08,148 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-09-08T10:42:08,148 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T10:42:08,148 ******************************************************************************** 2025-09-08T10:42:08,148 !! 2025-09-08T10:42:08,148 self._finalize_license_expression() 2025-09-08T10:42:08,149 running bdist_wheel 2025-09-08T10:42:08,543 running build 2025-09-08T10:42:08,544 running build_py 2025-09-08T10:42:08,623 creating build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T10:42:08,623 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T10:42:08,624 copying Mikado/version.py -> build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T10:42:08,624 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T10:42:08,625 creating build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T10:42:08,625 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T10:42:08,626 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T10:42:08,627 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T10:42:08,627 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T10:42:08,628 creating build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T10:42:08,629 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T10:42:08,629 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T10:42:08,630 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T10:42:08,630 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T10:42:08,631 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T10:42:08,632 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T10:42:08,632 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T10:42:08,633 creating build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T10:42:08,633 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T10:42:08,634 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T10:42:08,634 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T10:42:08,635 creating build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T10:42:08,635 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T10:42:08,636 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T10:42:08,636 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T10:42:08,638 creating build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,638 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,638 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,639 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,639 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,640 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,641 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,641 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,642 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,642 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,643 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,644 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,644 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,645 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,645 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,646 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,646 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,647 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,648 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,648 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,649 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,650 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,650 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,651 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,651 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:08,652 creating build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T10:42:08,652 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T10:42:08,653 creating build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T10:42:08,653 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T10:42:08,654 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T10:42:08,655 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T10:42:08,655 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T10:42:08,656 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T10:42:08,656 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T10:42:08,657 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T10:42:08,658 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T10:42:08,658 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T10:42:08,659 creating build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T10:42:08,659 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T10:42:08,660 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T10:42:08,660 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T10:42:08,661 creating build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T10:42:08,662 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T10:42:08,662 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T10:42:08,663 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T10:42:08,663 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T10:42:08,664 creating build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T10:42:08,665 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T10:42:08,665 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T10:42:08,666 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T10:42:08,666 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T10:42:08,667 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T10:42:08,667 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T10:42:08,668 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T10:42:08,669 creating build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:08,669 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:08,669 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:08,670 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:08,671 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:08,671 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:08,672 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:08,673 creating build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T10:42:08,673 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T10:42:08,674 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T10:42:08,674 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T10:42:08,675 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T10:42:08,675 creating build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T10:42:08,676 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T10:42:08,676 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T10:42:08,677 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T10:42:08,678 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T10:42:08,678 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T10:42:08,679 creating build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T10:42:08,679 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T10:42:08,680 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T10:42:08,680 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T10:42:08,681 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T10:42:08,682 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T10:42:08,682 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T10:42:08,683 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T10:42:08,683 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T10:42:08,684 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T10:42:08,684 creating build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T10:42:08,685 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T10:42:08,685 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T10:42:08,686 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T10:42:08,686 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T10:42:08,687 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T10:42:08,687 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T10:42:08,688 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T10:42:08,688 running egg_info 2025-09-08T10:42:08,771 writing Mikado.egg-info/PKG-INFO 2025-09-08T10:42:08,775 writing dependency_links to Mikado.egg-info/dependency_links.txt 2025-09-08T10:42:08,775 writing entry points to Mikado.egg-info/entry_points.txt 2025-09-08T10:42:08,778 writing requirements to Mikado.egg-info/requires.txt 2025-09-08T10:42:08,779 writing top-level names to Mikado.egg-info/top_level.txt 2025-09-08T10:42:08,869 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2025-09-08T10:42:08,908 reading manifest template 'MANIFEST.in' 2025-09-08T10:42:09,027 adding license file 'AUTHORS' 2025-09-08T10:42:09,061 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2025-09-08T10:42:09,078 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.configuration.scoring_files' is absent from the `packages` configuration. 2025-09-08T10:42:09,078 !! 2025-09-08T10:42:09,078 ******************************************************************************** 2025-09-08T10:42:09,078 ############################ 2025-09-08T10:42:09,078 # Package would be ignored # 2025-09-08T10:42:09,078 ############################ 2025-09-08T10:42:09,079 Python recognizes 'Mikado.configuration.scoring_files' as an importable package[^1], 2025-09-08T10:42:09,079 but it is absent from setuptools' `packages` configuration. 2025-09-08T10:42:09,079 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T10:42:09,079 package, please make sure that 'Mikado.configuration.scoring_files' is explicitly added 2025-09-08T10:42:09,079 to the `packages` configuration field. 2025-09-08T10:42:09,079 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T10:42:09,079 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T10:42:09,079 instead of `find_packages(...)`/`find:`). 2025-09-08T10:42:09,079 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T10:42:09,080 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T10:42:09,080 If you don't want 'Mikado.configuration.scoring_files' to be distributed and are 2025-09-08T10:42:09,080 already explicitly excluding 'Mikado.configuration.scoring_files' via 2025-09-08T10:42:09,080 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T10:42:09,080 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T10:42:09,080 combination with a more fine grained `package-data` configuration. 2025-09-08T10:42:09,080 You can read more about "package data files" on setuptools documentation page: 2025-09-08T10:42:09,081 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T10:42:09,081 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T10:42:09,081 even if it does not contain any `.py` files. 2025-09-08T10:42:09,081 On the other hand, currently there is no concept of package data 2025-09-08T10:42:09,081 directory, all directories are treated like packages. 2025-09-08T10:42:09,081 ******************************************************************************** 2025-09-08T10:42:09,081 !! 2025-09-08T10:42:09,081 check.warn(importable) 2025-09-08T10:42:09,082 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.tests.__pycache__' is absent from the `packages` configuration. 2025-09-08T10:42:09,082 !! 2025-09-08T10:42:09,082 ******************************************************************************** 2025-09-08T10:42:09,082 ############################ 2025-09-08T10:42:09,082 # Package would be ignored # 2025-09-08T10:42:09,082 ############################ 2025-09-08T10:42:09,082 Python recognizes 'Mikado.tests.__pycache__' as an importable package[^1], 2025-09-08T10:42:09,082 but it is absent from setuptools' `packages` configuration. 2025-09-08T10:42:09,082 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T10:42:09,083 package, please make sure that 'Mikado.tests.__pycache__' is explicitly added 2025-09-08T10:42:09,083 to the `packages` configuration field. 2025-09-08T10:42:09,083 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T10:42:09,083 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T10:42:09,083 instead of `find_packages(...)`/`find:`). 2025-09-08T10:42:09,083 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T10:42:09,083 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T10:42:09,084 If you don't want 'Mikado.tests.__pycache__' to be distributed and are 2025-09-08T10:42:09,084 already explicitly excluding 'Mikado.tests.__pycache__' via 2025-09-08T10:42:09,084 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T10:42:09,084 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T10:42:09,084 combination with a more fine grained `package-data` configuration. 2025-09-08T10:42:09,084 You can read more about "package data files" on setuptools documentation page: 2025-09-08T10:42:09,084 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T10:42:09,085 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T10:42:09,085 even if it does not contain any `.py` files. 2025-09-08T10:42:09,085 On the other hand, currently there is no concept of package data 2025-09-08T10:42:09,085 directory, all directories are treated like packages. 2025-09-08T10:42:09,085 ******************************************************************************** 2025-09-08T10:42:09,085 !! 2025-09-08T10:42:09,085 check.warn(importable) 2025-09-08T10:42:09,085 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.tests.fusion_test' is absent from the `packages` configuration. 2025-09-08T10:42:09,085 !! 2025-09-08T10:42:09,086 ******************************************************************************** 2025-09-08T10:42:09,086 ############################ 2025-09-08T10:42:09,086 # Package would be ignored # 2025-09-08T10:42:09,086 ############################ 2025-09-08T10:42:09,086 Python recognizes 'Mikado.tests.fusion_test' as an importable package[^1], 2025-09-08T10:42:09,086 but it is absent from setuptools' `packages` configuration. 2025-09-08T10:42:09,086 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T10:42:09,086 package, please make sure that 'Mikado.tests.fusion_test' is explicitly added 2025-09-08T10:42:09,086 to the `packages` configuration field. 2025-09-08T10:42:09,087 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T10:42:09,087 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T10:42:09,087 instead of `find_packages(...)`/`find:`). 2025-09-08T10:42:09,087 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T10:42:09,087 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T10:42:09,087 If you don't want 'Mikado.tests.fusion_test' to be distributed and are 2025-09-08T10:42:09,087 already explicitly excluding 'Mikado.tests.fusion_test' via 2025-09-08T10:42:09,087 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T10:42:09,088 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T10:42:09,088 combination with a more fine grained `package-data` configuration. 2025-09-08T10:42:09,088 You can read more about "package data files" on setuptools documentation page: 2025-09-08T10:42:09,088 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T10:42:09,088 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T10:42:09,088 even if it does not contain any `.py` files. 2025-09-08T10:42:09,088 On the other hand, currently there is no concept of package data 2025-09-08T10:42:09,088 directory, all directories are treated like packages. 2025-09-08T10:42:09,089 ******************************************************************************** 2025-09-08T10:42:09,089 !! 2025-09-08T10:42:09,089 check.warn(importable) 2025-09-08T10:42:09,094 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T10:42:09,095 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T10:42:09,096 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T10:42:09,096 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T10:42:09,097 creating build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T10:42:09,097 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T10:42:09,098 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T10:42:09,098 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T10:42:09,099 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T10:42:09,099 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T10:42:09,100 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T10:42:09,100 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T10:42:09,101 copying Mikado/configuration/scoring_files/scerevisiae.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T10:42:09,101 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T10:42:09,102 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T10:42:09,106 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T10:42:09,107 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T10:42:09,109 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T10:42:09,109 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T10:42:09,110 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,139 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,139 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,140 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,140 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,141 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,142 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,147 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,154 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,155 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,155 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,156 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,156 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,157 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,158 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,158 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,159 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,159 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T10:42:09,184 creating build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,184 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,184 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,185 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,186 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,186 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,187 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,188 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,188 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,189 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,189 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,190 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,191 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,192 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,192 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,193 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,194 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,194 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,195 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,195 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,196 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,196 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,197 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,197 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,198 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,198 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,199 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,199 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,200 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,200 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,201 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,202 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,202 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,203 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,203 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,204 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,204 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,205 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,205 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,206 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,206 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,207 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,207 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,208 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,208 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,209 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,209 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,210 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,210 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,211 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,211 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,212 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,213 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,213 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,214 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,214 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,215 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,216 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,216 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,217 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,217 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,218 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,219 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,219 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,220 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,220 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,221 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,222 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,222 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,223 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,224 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,225 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,225 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,226 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,226 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,227 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T10:42:09,227 creating build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T10:42:09,228 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T10:42:09,228 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T10:42:09,229 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T10:42:09,229 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T10:42:09,230 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T10:42:09,230 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T10:42:09,231 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T10:42:09,231 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T10:42:09,232 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:09,235 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:09,235 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:09,236 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:09,238 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:09,238 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:09,243 running build_ext 2025-09-08T10:42:09,251 building 'Mikado.utilities.overlap' extension 2025-09-08T10:42:09,251 creating build/temp.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T10:42:09,252 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-cpython-313/Mikado/utilities/overlap.o 2025-09-08T10:42:13,283 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/utilities/overlap.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so 2025-09-08T10:42:13,404 building 'Mikado.scales.f1' extension 2025-09-08T10:42:13,405 creating build/temp.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T10:42:13,405 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-cpython-313/Mikado/scales/f1.o 2025-09-08T10:42:16,721 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/scales/f1.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so 2025-09-08T10:42:16,838 building 'Mikado.scales.contrast' extension 2025-09-08T10:42:16,838 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-cpython-313/Mikado/scales/contrast.o 2025-09-08T10:42:29,388 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/scales/contrast.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so 2025-09-08T10:42:29,514 building 'Mikado.utilities.intervaltree' extension 2025-09-08T10:42:29,515 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.o 2025-09-08T10:42:49,331 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so 2025-09-08T10:42:49,473 running build_scripts 2025-09-08T10:42:49,474 creating build/scripts-3.13 2025-09-08T10:42:49,474 copying and adjusting util/trim_long_introns.py -> build/scripts-3.13 2025-09-08T10:42:49,474 copying and adjusting util/asm_collect.py -> build/scripts-3.13 2025-09-08T10:42:49,474 copying and adjusting util/bam2gtf.py -> build/scripts-3.13 2025-09-08T10:42:49,474 copying and adjusting util/self_training.py -> build/scripts-3.13 2025-09-08T10:42:49,474 copying and adjusting util/convert_cdna_match_gff3.py -> build/scripts-3.13 2025-09-08T10:42:49,474 copying and adjusting util/calculate_distances.py -> build/scripts-3.13 2025-09-08T10:42:49,474 copying util/tease_maker_apart.py -> build/scripts-3.13 2025-09-08T10:42:49,474 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.13 2025-09-08T10:42:49,475 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.13 2025-09-08T10:42:49,475 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.13 2025-09-08T10:42:49,476 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.13 2025-09-08T10:42:49,477 copying and adjusting util/remove_utrs.py -> build/scripts-3.13 2025-09-08T10:42:49,477 copying and adjusting util/align_collect.py -> build/scripts-3.13 2025-09-08T10:42:49,478 copying and adjusting util/extract_promoter_regions.py -> build/scripts-3.13 2025-09-08T10:42:49,479 copying and adjusting util/grep.py -> build/scripts-3.13 2025-09-08T10:42:49,480 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.13 2025-09-08T10:42:49,480 copying and adjusting util/class_run.py -> build/scripts-3.13 2025-09-08T10:42:49,481 copying and adjusting util/split_fasta.py -> build/scripts-3.13 2025-09-08T10:42:49,482 copying and adjusting util/remove_from_embl.py -> build/scripts-3.13 2025-09-08T10:42:49,482 copying and adjusting util/analyse_metrics.py -> build/scripts-3.13 2025-09-08T10:42:49,483 copying and adjusting util/create_model.py -> build/scripts-3.13 2025-09-08T10:42:49,484 changing mode of build/scripts-3.13/trim_long_introns.py from 644 to 755 2025-09-08T10:42:49,484 changing mode of build/scripts-3.13/asm_collect.py from 644 to 755 2025-09-08T10:42:49,484 changing mode of build/scripts-3.13/bam2gtf.py from 644 to 755 2025-09-08T10:42:49,485 changing mode of build/scripts-3.13/self_training.py from 644 to 755 2025-09-08T10:42:49,485 changing mode of build/scripts-3.13/convert_cdna_match_gff3.py from 644 to 755 2025-09-08T10:42:49,485 changing mode of build/scripts-3.13/calculate_distances.py from 644 to 755 2025-09-08T10:42:49,485 changing mode of build/scripts-3.13/tease_maker_apart.py from 644 to 755 2025-09-08T10:42:49,486 changing mode of build/scripts-3.13/merge_junction_bed12.py from 644 to 755 2025-09-08T10:42:49,486 changing mode of build/scripts-3.13/getFastaFromIds.py from 644 to 755 2025-09-08T10:42:49,486 changing mode of build/scripts-3.13/gffjunc_to_bed12.py from 644 to 755 2025-09-08T10:42:49,487 changing mode of build/scripts-3.13/sanitize_blast_db.py from 644 to 755 2025-09-08T10:42:49,487 changing mode of build/scripts-3.13/remove_utrs.py from 644 to 755 2025-09-08T10:42:49,487 changing mode of build/scripts-3.13/align_collect.py from 644 to 755 2025-09-08T10:42:49,488 changing mode of build/scripts-3.13/extract_promoter_regions.py from 644 to 755 2025-09-08T10:42:49,488 changing mode of build/scripts-3.13/grep.py from 644 to 755 2025-09-08T10:42:49,488 changing mode of build/scripts-3.13/add_transcript_feature_to_gtf.py from 644 to 755 2025-09-08T10:42:49,489 changing mode of build/scripts-3.13/class_run.py from 644 to 755 2025-09-08T10:42:49,489 changing mode of build/scripts-3.13/split_fasta.py from 644 to 755 2025-09-08T10:42:49,489 changing mode of build/scripts-3.13/remove_from_embl.py from 644 to 755 2025-09-08T10:42:49,490 changing mode of build/scripts-3.13/analyse_metrics.py from 644 to 755 2025-09-08T10:42:49,490 changing mode of build/scripts-3.13/create_model.py from 644 to 755 2025-09-08T10:42:49,631 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-08T10:42:49,631 !! 2025-09-08T10:42:49,631 ******************************************************************************** 2025-09-08T10:42:49,631 Please avoid running ``setup.py`` directly. 2025-09-08T10:42:49,631 Instead, use pypa/build, pypa/installer or other 2025-09-08T10:42:49,632 standards-based tools. 2025-09-08T10:42:49,632 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T10:42:49,632 or your builds will no longer be supported. 2025-09-08T10:42:49,632 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-08T10:42:49,632 ******************************************************************************** 2025-09-08T10:42:49,632 !! 2025-09-08T10:42:49,632 self.initialize_options() 2025-09-08T10:42:49,707 installing to build/bdist.linux-armv7l/wheel 2025-09-08T10:42:49,708 running install 2025-09-08T10:42:49,730 running install_lib 2025-09-08T10:42:49,804 creating build/bdist.linux-armv7l/wheel 2025-09-08T10:42:49,805 creating build/bdist.linux-armv7l/wheel/Mikado 2025-09-08T10:42:49,806 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2025-09-08T10:42:49,806 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2025-09-08T10:42:49,807 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T10:42:49,807 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T10:42:49,808 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T10:42:49,809 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T10:42:49,809 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T10:42:49,810 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T10:42:49,810 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T10:42:49,811 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T10:42:49,812 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T10:42:49,812 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T10:42:49,813 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T10:42:49,814 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2025-09-08T10:42:49,814 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,817 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,818 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,819 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,820 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.c -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,821 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,822 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,823 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.c -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,826 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,826 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,827 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/assigner.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,828 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,828 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/class_codes.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,829 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T10:42:49,830 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2025-09-08T10:42:49,830 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2025-09-08T10:42:49,831 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T10:42:49,832 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/merge_blast.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T10:42:49,832 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T10:42:49,833 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T10:42:49,834 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/class_codes.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T10:42:49,834 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T10:42:49,835 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T10:42:49,835 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T10:42:49,836 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T10:42:49,837 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T10:42:49,837 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T10:42:49,838 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T10:42:49,838 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T10:42:49,839 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T10:42:49,840 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T10:42:49,840 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T10:42:49,841 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2025-09-08T10:42:49,841 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T10:42:49,842 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T10:42:49,843 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T10:42:49,843 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T10:42:49,844 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2025-09-08T10:42:49,845 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T10:42:49,846 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T10:42:49,846 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T10:42:49,847 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2025-09-08T10:42:49,848 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T10:42:49,848 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/reference_gene.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T10:42:49,849 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T10:42:49,850 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T10:42:49,850 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T10:42:49,851 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T10:42:49,852 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T10:42:49,852 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T10:42:49,853 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T10:42:49,854 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2025-09-08T10:42:49,854 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/tr.snakefile -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T10:42:49,855 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/mikado.snakefile -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T10:42:49,856 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T10:42:49,856 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/hpc.json -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T10:42:49,857 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/example_config.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T10:42:49,857 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T10:42:49,858 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2025-09-08T10:42:49,859 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2025-09-08T10:42:49,859 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T10:42:49,860 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T10:42:49,861 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test.log -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T10:42:49,861 creating build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2025-09-08T10:42:49,862 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,863 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,863 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,864 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,864 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,865 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,866 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,867 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,867 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,868 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,869 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,870 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,870 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,871 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,872 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,872 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,873 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,873 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,874 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,875 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,875 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,876 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,877 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,877 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,878 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,878 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,879 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,880 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,880 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,881 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,881 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,882 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,882 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,883 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,884 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,884 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,885 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,885 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,886 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,887 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,887 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,888 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,888 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,889 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,889 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,890 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,891 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,891 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,892 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,892 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,893 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,894 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,894 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,895 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,895 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,896 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,897 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,897 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,898 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,898 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,899 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,899 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,900 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,901 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,902 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,902 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,903 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,904 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,904 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,905 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,906 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,907 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,907 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,908 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,908 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T10:42:49,909 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,933 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,934 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,935 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,935 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,936 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,936 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/scoring_only_cds.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,937 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/plants.yaml~ -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,938 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,938 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,939 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,946 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,950 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,952 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,953 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,953 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,954 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,955 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,983 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/utilities_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,984 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,985 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,985 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,986 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,987 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_single.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,987 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_positive.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,988 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/assigner_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,989 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_negative.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,990 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_json.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,990 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/intervaltree_tests.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,991 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,991 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,992 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,993 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,993 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,994 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,994 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,995 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,996 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_serialisation.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,996 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/locus_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,997 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/orf_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,998 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/parser_testing.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,998 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T10:42:49,999 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2025-09-08T10:42:50,000 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T10:42:50,004 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T10:42:50,006 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T10:42:50,006 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T10:42:50,007 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T10:42:50,009 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T10:42:50,009 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.c -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T10:42:50,014 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T10:42:50,014 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T10:42:50,015 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T10:42:50,016 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2025-09-08T10:42:50,016 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2025-09-08T10:42:50,017 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/worm.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T10:42:50,017 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/scerevisiae.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T10:42:50,018 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/plants.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T10:42:50,019 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/insects.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T10:42:50,019 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/human.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T10:42:50,020 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T10:42:50,020 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T10:42:50,021 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T10:42:50,021 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T10:42:50,022 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T10:42:50,023 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/requirements_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T10:42:50,023 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/daijin_schema.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T10:42:50,024 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/configuration_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T10:42:50,025 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T10:42:50,025 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T10:42:50,026 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T10:42:50,027 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2025-09-08T10:42:50,027 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T10:42:50,028 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T10:42:50,028 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T10:42:50,029 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T10:42:50,030 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/blast_xml.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T10:42:50,030 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T10:42:50,031 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T10:42:50,032 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts 2025-09-08T10:42:50,032 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2025-09-08T10:42:50,033 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T10:42:50,034 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T10:42:50,034 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T10:42:50,035 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T10:42:50,036 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T10:42:50,036 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/clique_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T10:42:50,037 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T10:42:50,037 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T10:42:50,038 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T10:42:50,039 copying build/lib.linux-armv7l-cpython-313/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/./Mikado 2025-09-08T10:42:50,040 copying build/lib.linux-armv7l-cpython-313/Mikado/version.py -> build/bdist.linux-armv7l/wheel/./Mikado 2025-09-08T10:42:50,040 copying build/lib.linux-armv7l-cpython-313/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado 2025-09-08T10:42:50,041 running install_egg_info 2025-09-08T10:42:50,119 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/./Mikado-1.1-py3.13.egg-info 2025-09-08T10:42:50,121 running install_scripts 2025-09-08T10:42:50,122 creating build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,123 copying build/scripts-3.13/create_model.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,124 copying build/scripts-3.13/analyse_metrics.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,124 copying build/scripts-3.13/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,125 copying build/scripts-3.13/split_fasta.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,125 copying build/scripts-3.13/class_run.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,126 copying build/scripts-3.13/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,127 copying build/scripts-3.13/grep.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,127 copying build/scripts-3.13/extract_promoter_regions.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,128 copying build/scripts-3.13/align_collect.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,128 copying build/scripts-3.13/remove_utrs.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,129 copying build/scripts-3.13/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,129 copying build/scripts-3.13/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,130 copying build/scripts-3.13/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,131 copying build/scripts-3.13/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,131 copying build/scripts-3.13/tease_maker_apart.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,132 copying build/scripts-3.13/calculate_distances.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,132 copying build/scripts-3.13/convert_cdna_match_gff3.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,133 copying build/scripts-3.13/self_training.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,133 copying build/scripts-3.13/bam2gtf.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,134 copying build/scripts-3.13/asm_collect.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,135 copying build/scripts-3.13/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts 2025-09-08T10:42:50,135 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/create_model.py to 755 2025-09-08T10:42:50,136 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/analyse_metrics.py to 755 2025-09-08T10:42:50,136 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/remove_from_embl.py to 755 2025-09-08T10:42:50,136 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/split_fasta.py to 755 2025-09-08T10:42:50,136 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/class_run.py to 755 2025-09-08T10:42:50,137 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/add_transcript_feature_to_gtf.py to 755 2025-09-08T10:42:50,137 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/grep.py to 755 2025-09-08T10:42:50,137 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/extract_promoter_regions.py to 755 2025-09-08T10:42:50,137 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/align_collect.py to 755 2025-09-08T10:42:50,138 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/remove_utrs.py to 755 2025-09-08T10:42:50,138 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/sanitize_blast_db.py to 755 2025-09-08T10:42:50,138 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/gffjunc_to_bed12.py to 755 2025-09-08T10:42:50,138 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/getFastaFromIds.py to 755 2025-09-08T10:42:50,139 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/merge_junction_bed12.py to 755 2025-09-08T10:42:50,139 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/tease_maker_apart.py to 755 2025-09-08T10:42:50,139 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/calculate_distances.py to 755 2025-09-08T10:42:50,139 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/convert_cdna_match_gff3.py to 755 2025-09-08T10:42:50,140 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/self_training.py to 755 2025-09-08T10:42:50,140 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/bam2gtf.py to 755 2025-09-08T10:42:50,140 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/asm_collect.py to 755 2025-09-08T10:42:50,140 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.1.data/scripts/trim_long_introns.py to 755 2025-09-08T10:42:50,191 creating build/bdist.linux-armv7l/wheel/mikado-1.1.dist-info/WHEEL 2025-09-08T10:42:50,193 creating '/tmp/pip-wheel-167k4fnb/mikado-1.1-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-08T10:42:50,194 adding 'Mikado/__init__.py' 2025-09-08T10:42:50,196 adding 'Mikado/exceptions.py' 2025-09-08T10:42:50,196 adding 'Mikado/version.py' 2025-09-08T10:42:50,198 adding 'Mikado/configuration/__init__.py' 2025-09-08T10:42:50,201 adding 'Mikado/configuration/configuration_blueprint.json' 2025-09-08T10:42:50,204 adding 'Mikado/configuration/configurator.py' 2025-09-08T10:42:50,206 adding 'Mikado/configuration/daijin_configurator.py' 2025-09-08T10:42:50,207 adding 'Mikado/configuration/daijin_schema.json' 2025-09-08T10:42:50,208 adding 'Mikado/configuration/requirements_blueprint.json' 2025-09-08T10:42:50,209 adding 'Mikado/configuration/scoring_blueprint.json' 2025-09-08T10:42:50,210 adding 'Mikado/configuration/scoring_files/athaliana_scoring.yaml' 2025-09-08T10:42:50,211 adding 'Mikado/configuration/scoring_files/celegans_scoring.yaml' 2025-09-08T10:42:50,212 adding 'Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml' 2025-09-08T10:42:50,213 adding 'Mikado/configuration/scoring_files/hsapiens_scoring.yaml' 2025-09-08T10:42:50,214 adding 'Mikado/configuration/scoring_files/human.yaml' 2025-09-08T10:42:50,215 adding 'Mikado/configuration/scoring_files/insects.yaml' 2025-09-08T10:42:50,216 adding 'Mikado/configuration/scoring_files/plants.yaml' 2025-09-08T10:42:50,217 adding 'Mikado/configuration/scoring_files/scerevisiae.yaml' 2025-09-08T10:42:50,217 adding 'Mikado/configuration/scoring_files/worm.yaml' 2025-09-08T10:42:50,220 adding 'Mikado/daijin/__init__.py' 2025-09-08T10:42:50,222 adding 'Mikado/daijin/example_config.yaml' 2025-09-08T10:42:50,222 adding 'Mikado/daijin/hpc.json' 2025-09-08T10:42:50,223 adding 'Mikado/daijin/hpc.yaml' 2025-09-08T10:42:50,225 adding 'Mikado/daijin/mikado.snakefile' 2025-09-08T10:42:50,228 adding 'Mikado/daijin/tr.snakefile' 2025-09-08T10:42:50,229 adding 'Mikado/loci/__init__.py' 2025-09-08T10:42:50,236 adding 'Mikado/loci/abstractlocus.py' 2025-09-08T10:42:50,238 adding 'Mikado/loci/excluded.py' 2025-09-08T10:42:50,241 adding 'Mikado/loci/locus.py' 2025-09-08T10:42:50,242 adding 'Mikado/loci/monosublocus.py' 2025-09-08T10:42:50,245 adding 'Mikado/loci/monosublocusholder.py' 2025-09-08T10:42:50,247 adding 'Mikado/loci/reference_gene.py' 2025-09-08T10:42:50,249 adding 'Mikado/loci/sublocus.py' 2025-09-08T10:42:50,254 adding 'Mikado/loci/superlocus.py' 2025-09-08T10:42:50,256 adding 'Mikado/parsers/GFF.py' 2025-09-08T10:42:50,258 adding 'Mikado/parsers/GTF.py' 2025-09-08T10:42:50,259 adding 'Mikado/parsers/__init__.py' 2025-09-08T10:42:50,262 adding 'Mikado/parsers/bed12.py' 2025-09-08T10:42:50,264 adding 'Mikado/parsers/blast_utils.py' 2025-09-08T10:42:50,268 adding 'Mikado/parsers/blast_xml.py' 2025-09-08T10:42:50,270 adding 'Mikado/parsers/gfannotation.py' 2025-09-08T10:42:50,271 adding 'Mikado/picking/__init__.py' 2025-09-08T10:42:50,275 adding 'Mikado/picking/loci_processer.py' 2025-09-08T10:42:50,280 adding 'Mikado/picking/picker.py' 2025-09-08T10:42:50,281 adding 'Mikado/preparation/__init__.py' 2025-09-08T10:42:50,283 adding 'Mikado/preparation/annotation_parser.py' 2025-09-08T10:42:50,285 adding 'Mikado/preparation/checking.py' 2025-09-08T10:42:50,286 adding 'Mikado/preparation/prepare.py' 2025-09-08T10:42:50,287 adding 'Mikado/scales/__init__.py' 2025-09-08T10:42:50,291 adding 'Mikado/scales/accountant.py' 2025-09-08T10:42:50,294 adding 'Mikado/scales/assigner.py' 2025-09-08T10:42:50,297 adding 'Mikado/scales/class_codes.py' 2025-09-08T10:42:50,300 adding 'Mikado/scales/compare.py' 2025-09-08T10:42:50,353 adding 'Mikado/scales/contrast.c' 2025-09-08T10:42:50,472 adding 'Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T10:42:50,477 adding 'Mikado/scales/contrast.pxd' 2025-09-08T10:42:50,479 adding 'Mikado/scales/contrast.pyx' 2025-09-08T10:42:50,510 adding 'Mikado/scales/f1.c' 2025-09-08T10:42:50,550 adding 'Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T10:42:50,552 adding 'Mikado/scales/f1.pxd' 2025-09-08T10:42:50,553 adding 'Mikado/scales/f1.pyx' 2025-09-08T10:42:50,553 adding 'Mikado/scales/resultstorer.py' 2025-09-08T10:42:50,554 adding 'Mikado/serializers/__init__.py' 2025-09-08T10:42:50,555 adding 'Mikado/serializers/external.py' 2025-09-08T10:42:50,556 adding 'Mikado/serializers/junction.py' 2025-09-08T10:42:50,558 adding 'Mikado/serializers/orf.py' 2025-09-08T10:42:50,559 adding 'Mikado/serializers/blast_serializer/__init__.py' 2025-09-08T10:42:50,560 adding 'Mikado/serializers/blast_serializer/hit.py' 2025-09-08T10:42:50,561 adding 'Mikado/serializers/blast_serializer/hsp.py' 2025-09-08T10:42:50,562 adding 'Mikado/serializers/blast_serializer/query.py' 2025-09-08T10:42:50,562 adding 'Mikado/serializers/blast_serializer/target.py' 2025-09-08T10:42:50,563 adding 'Mikado/serializers/blast_serializer/utils.py' 2025-09-08T10:42:50,567 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2025-09-08T10:42:50,567 adding 'Mikado/subprograms/__init__.py' 2025-09-08T10:42:50,568 adding 'Mikado/subprograms/__main__.py' 2025-09-08T10:42:50,569 adding 'Mikado/subprograms/compare.py' 2025-09-08T10:42:50,571 adding 'Mikado/subprograms/configure.py' 2025-09-08T10:42:50,572 adding 'Mikado/subprograms/pick.py' 2025-09-08T10:42:50,573 adding 'Mikado/subprograms/prepare.py' 2025-09-08T10:42:50,575 adding 'Mikado/subprograms/serialise.py' 2025-09-08T10:42:50,576 adding 'Mikado/subprograms/util/__init__.py' 2025-09-08T10:42:50,577 adding 'Mikado/subprograms/util/awk_gtf.py' 2025-09-08T10:42:50,578 adding 'Mikado/subprograms/util/class_codes.py' 2025-09-08T10:42:50,579 adding 'Mikado/subprograms/util/convert.py' 2025-09-08T10:42:50,580 adding 'Mikado/subprograms/util/grep.py' 2025-09-08T10:42:50,580 adding 'Mikado/subprograms/util/merge_blast.py' 2025-09-08T10:42:50,581 adding 'Mikado/subprograms/util/metrics.py' 2025-09-08T10:42:50,584 adding 'Mikado/subprograms/util/stats.py' 2025-09-08T10:42:50,585 adding 'Mikado/subprograms/util/trim.py' 2025-09-08T10:42:50,586 adding 'Mikado/tests/__init__.py' 2025-09-08T10:42:50,589 adding 'Mikado/tests/assigner_tester.py' 2025-09-08T10:42:51,450 adding 'Mikado/tests/chr5.fas.gz' 2025-09-08T10:42:51,502 adding 'Mikado/tests/configuration.yaml' 2025-09-08T10:42:51,503 adding 'Mikado/tests/cufflinks.gtf' 2025-09-08T10:42:51,504 adding 'Mikado/tests/genome.fai' 2025-09-08T10:42:51,505 adding 'Mikado/tests/intervaltree_tests.py' 2025-09-08T10:42:51,509 adding 'Mikado/tests/junctions.bed' 2025-09-08T10:42:51,514 adding 'Mikado/tests/locus_tester.py' 2025-09-08T10:42:51,539 adding 'Mikado/tests/mikado.blast.asn.gz' 2025-09-08T10:42:51,592 adding 'Mikado/tests/mikado.blast.xml' 2025-09-08T10:42:51,860 adding 'Mikado/tests/mikado.db' 2025-09-08T10:42:51,875 adding 'Mikado/tests/mikado_prepared.gtf' 2025-09-08T10:42:51,880 adding 'Mikado/tests/orf_tester.py' 2025-09-08T10:42:51,881 adding 'Mikado/tests/parser_testing.py' 2025-09-08T10:42:51,882 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2025-09-08T10:42:51,882 adding 'Mikado/tests/plants.yaml~' 2025-09-08T10:42:51,883 adding 'Mikado/tests/scoring_only_cds.yaml' 2025-09-08T10:42:51,884 adding 'Mikado/tests/test_blast_related.py' 2025-09-08T10:42:51,885 adding 'Mikado/tests/test_clique_methods.py' 2025-09-08T10:42:51,885 adding 'Mikado/tests/test_db_utils.py' 2025-09-08T10:42:51,886 adding 'Mikado/tests/test_external_scores.py' 2025-09-08T10:42:51,887 adding 'Mikado/tests/test_gene.py' 2025-09-08T10:42:51,887 adding 'Mikado/tests/test_invalid_orfs.py' 2025-09-08T10:42:51,888 adding 'Mikado/tests/test_json.py' 2025-09-08T10:42:51,889 adding 'Mikado/tests/test_metrics.py' 2025-09-08T10:42:51,890 adding 'Mikado/tests/test_modifications.py' 2025-09-08T10:42:51,891 adding 'Mikado/tests/test_serialisation.py' 2025-09-08T10:42:51,892 adding 'Mikado/tests/test_splitting.py' 2025-09-08T10:42:51,894 adding 'Mikado/tests/test_system_calls.py' 2025-09-08T10:42:51,896 adding 'Mikado/tests/test_transcript_checker.py' 2025-09-08T10:42:51,897 adding 'Mikado/tests/test_transcript_methods.py' 2025-09-08T10:42:51,899 adding 'Mikado/tests/transcript_tester_negative.py' 2025-09-08T10:42:51,903 adding 'Mikado/tests/transcript_tester_positive.py' 2025-09-08T10:42:51,905 adding 'Mikado/tests/transcript_tester_single.py' 2025-09-08T10:42:51,907 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2025-09-08T10:42:51,909 adding 'Mikado/tests/trinity.gff3' 2025-09-08T10:42:51,910 adding 'Mikado/tests/trinity.gtf' 2025-09-08T10:42:51,912 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2025-09-08T10:42:51,913 adding 'Mikado/tests/trinity_stats.txt' 2025-09-08T10:42:52,620 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2025-09-08T10:42:52,662 adding 'Mikado/tests/utilities_tester.py' 2025-09-08T10:42:52,663 adding 'Mikado/tests/__pycache__/__init__.cpython-34.pyc' 2025-09-08T10:42:52,664 adding 'Mikado/tests/__pycache__/__init__.cpython-35.pyc' 2025-09-08T10:42:52,664 adding 'Mikado/tests/__pycache__/__init__.cpython-36.pyc' 2025-09-08T10:42:52,668 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc' 2025-09-08T10:42:52,672 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc' 2025-09-08T10:42:52,676 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc' 2025-09-08T10:42:52,678 adding 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2025-09-08T10:42:52,779 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc' 2025-09-08T10:42:52,781 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc' 2025-09-08T10:42:52,784 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc' 2025-09-08T10:42:52,787 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc' 2025-09-08T10:42:52,789 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc' 2025-09-08T10:42:52,794 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc' 2025-09-08T10:42:52,799 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc' 2025-09-08T10:42:52,803 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc' 2025-09-08T10:42:52,807 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc' 2025-09-08T10:42:52,810 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc' 2025-09-08T10:42:52,813 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc' 2025-09-08T10:42:52,815 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc' 2025-09-08T10:42:52,816 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc' 2025-09-08T10:42:52,817 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc' 2025-09-08T10:42:52,818 adding 'Mikado/tests/fusion_test/fusion_test.log' 2025-09-08T10:42:52,819 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2025-09-08T10:42:52,820 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2025-09-08T10:42:52,820 adding 'Mikado/transcripts/__init__.py' 2025-09-08T10:42:52,821 adding 'Mikado/transcripts/clique_methods.py' 2025-09-08T10:42:52,832 adding 'Mikado/transcripts/transcript.py' 2025-09-08T10:42:52,834 adding 'Mikado/transcripts/transcriptchecker.py' 2025-09-08T10:42:52,835 adding 'Mikado/transcripts/transcript_methods/__init__.py' 2025-09-08T10:42:52,837 adding 'Mikado/transcripts/transcript_methods/finalizing.py' 2025-09-08T10:42:52,839 adding 'Mikado/transcripts/transcript_methods/printing.py' 2025-09-08T10:42:52,842 adding 'Mikado/transcripts/transcript_methods/retrieval.py' 2025-09-08T10:42:52,846 adding 'Mikado/transcripts/transcript_methods/splitting.py' 2025-09-08T10:42:52,847 adding 'Mikado/utilities/__init__.py' 2025-09-08T10:42:52,848 adding 'Mikado/utilities/dbutils.py' 2025-09-08T10:42:52,918 adding 'Mikado/utilities/intervaltree.c' 2025-09-08T10:42:53,134 adding 'Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T10:42:53,143 adding 'Mikado/utilities/intervaltree.pyx' 2025-09-08T10:42:53,144 adding 'Mikado/utilities/log_utils.py' 2025-09-08T10:42:53,176 adding 'Mikado/utilities/overlap.c' 2025-09-08T10:42:53,226 adding 'Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T10:42:53,228 adding 'Mikado/utilities/overlap.pxd' 2025-09-08T10:42:53,229 adding 'Mikado/utilities/overlap.pyx' 2025-09-08T10:42:53,230 adding 'mikado-1.1.data/scripts/add_transcript_feature_to_gtf.py' 2025-09-08T10:42:53,231 adding 'mikado-1.1.data/scripts/align_collect.py' 2025-09-08T10:42:53,231 adding 'mikado-1.1.data/scripts/analyse_metrics.py' 2025-09-08T10:42:53,232 adding 'mikado-1.1.data/scripts/asm_collect.py' 2025-09-08T10:42:53,233 adding 'mikado-1.1.data/scripts/bam2gtf.py' 2025-09-08T10:42:53,234 adding 'mikado-1.1.data/scripts/calculate_distances.py' 2025-09-08T10:42:53,235 adding 'mikado-1.1.data/scripts/class_run.py' 2025-09-08T10:42:53,236 adding 'mikado-1.1.data/scripts/convert_cdna_match_gff3.py' 2025-09-08T10:42:53,237 adding 'mikado-1.1.data/scripts/create_model.py' 2025-09-08T10:42:53,238 adding 'mikado-1.1.data/scripts/extract_promoter_regions.py' 2025-09-08T10:42:53,239 adding 'mikado-1.1.data/scripts/getFastaFromIds.py' 2025-09-08T10:42:53,239 adding 'mikado-1.1.data/scripts/gffjunc_to_bed12.py' 2025-09-08T10:42:53,240 adding 'mikado-1.1.data/scripts/grep.py' 2025-09-08T10:42:53,241 adding 'mikado-1.1.data/scripts/merge_junction_bed12.py' 2025-09-08T10:42:53,242 adding 'mikado-1.1.data/scripts/remove_from_embl.py' 2025-09-08T10:42:53,242 adding 'mikado-1.1.data/scripts/remove_utrs.py' 2025-09-08T10:42:53,243 adding 'mikado-1.1.data/scripts/sanitize_blast_db.py' 2025-09-08T10:42:53,244 adding 'mikado-1.1.data/scripts/self_training.py' 2025-09-08T10:42:53,245 adding 'mikado-1.1.data/scripts/split_fasta.py' 2025-09-08T10:42:53,246 adding 'mikado-1.1.data/scripts/tease_maker_apart.py' 2025-09-08T10:42:53,247 adding 'mikado-1.1.data/scripts/trim_long_introns.py' 2025-09-08T10:42:53,248 adding 'mikado-1.1.dist-info/licenses/AUTHORS' 2025-09-08T10:42:53,249 adding 'mikado-1.1.dist-info/METADATA' 2025-09-08T10:42:53,249 adding 'mikado-1.1.dist-info/WHEEL' 2025-09-08T10:42:53,249 adding 'mikado-1.1.dist-info/entry_points.txt' 2025-09-08T10:42:53,250 adding 'mikado-1.1.dist-info/top_level.txt' 2025-09-08T10:42:53,254 adding 'mikado-1.1.dist-info/RECORD' 2025-09-08T10:42:53,257 removing build/bdist.linux-armv7l/wheel 2025-09-08T10:42:53,419 Building wheel for mikado (setup.py): finished with status 'done' 2025-09-08T10:42:53,598 Created wheel for mikado: filename=mikado-1.1-cp313-cp313-linux_armv7l.whl size=17751980 sha256=cc5aaceaf7fdd95eaabce55d720dfd1f5d3fbcd4d6c286fe1159d54cd58aee5b 2025-09-08T10:42:53,599 Stored in directory: /tmp/pip-ephem-wheel-cache-norjnjch/wheels/43/08/3e/8b4581aa5da50113be2456fb6c18c4bbbf8db1594a4e1ddc48 2025-09-08T10:42:53,614 Successfully built mikado 2025-09-08T10:42:53,651 Removed build tracker: '/tmp/pip-build-tracker-fs381_xp'