2025-09-08T11:56:41,556 Created temporary directory: /tmp/pip-build-tracker-tka3q9li 2025-09-08T11:56:41,557 Initialized build tracking at /tmp/pip-build-tracker-tka3q9li 2025-09-08T11:56:41,557 Created build tracker: /tmp/pip-build-tracker-tka3q9li 2025-09-08T11:56:41,557 Entered build tracker: /tmp/pip-build-tracker-tka3q9li 2025-09-08T11:56:41,557 Created temporary directory: /tmp/pip-wheel-fb275lr7 2025-09-08T11:56:41,560 Created temporary directory: /tmp/pip-ephem-wheel-cache-n4ucut4i 2025-09-08T11:56:41,619 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T11:56:41,622 2 location(s) to search for versions of pydensecrf: 2025-09-08T11:56:41,622 * https://pypi.org/simple/pydensecrf/ 2025-09-08T11:56:41,622 * https://www.piwheels.org/simple/pydensecrf/ 2025-09-08T11:56:41,622 Fetching project page and analyzing links: https://pypi.org/simple/pydensecrf/ 2025-09-08T11:56:41,622 Getting page https://pypi.org/simple/pydensecrf/ 2025-09-08T11:56:41,623 Found index url https://pypi.org/simple/ 2025-09-08T11:56:41,767 Fetched page https://pypi.org/simple/pydensecrf/ as application/vnd.pypi.simple.v1+json 2025-09-08T11:56:41,769 Found link https://files.pythonhosted.org/packages/87/40/8bca500342914f83d35da61fd7be0c47955156bee87683a6aa1d0e8e040a/pydensecrf-1.0rc1.tar.gz (from https://pypi.org/simple/pydensecrf/), version: 1.0rc1 2025-09-08T11:56:41,770 Found link https://files.pythonhosted.org/packages/dd/11/7a79e817078323893f8071bb3fda1f45e34e443ec4a0790f8542158bbced/pydensecrf-1.0rc2.tar.gz (from https://pypi.org/simple/pydensecrf/), version: 1.0rc2 2025-09-08T11:56:41,771 Found link https://files.pythonhosted.org/packages/31/5a/1c2ab48e8019d282c128bc5c621332267bb954d32eecdda3ba57306b1551/pydensecrf-1.0rc3.tar.gz (from https://pypi.org/simple/pydensecrf/), version: 1.0rc3 2025-09-08T11:56:41,771 Fetching project page and analyzing links: https://www.piwheels.org/simple/pydensecrf/ 2025-09-08T11:56:41,772 Getting page https://www.piwheels.org/simple/pydensecrf/ 2025-09-08T11:56:41,774 Found index url https://www.piwheels.org/simple/ 2025-09-08T11:56:41,877 Fetched page https://www.piwheels.org/simple/pydensecrf/ as text/html 2025-09-08T11:56:41,879 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc3-cp34-cp34m-linux_armv6l.whl#sha256=10b3c73f1525f811209ecccc1f6c4c428bf493ddacc88091c8c2f97c5c1a52a4 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,880 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc3-cp34-cp34m-linux_armv7l.whl#sha256=10b3c73f1525f811209ecccc1f6c4c428bf493ddacc88091c8c2f97c5c1a52a4 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,880 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc3-cp35-cp35m-linux_armv7l.whl#sha256=097b990b0058792311dc92c8568d434685054fa51dd6c2b2b20a9f81c29e7b1d (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,880 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc3-cp35-cp35m-linux_armv6l.whl#sha256=097b990b0058792311dc92c8568d434685054fa51dd6c2b2b20a9f81c29e7b1d (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,880 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc2-cp34-cp34m-linux_armv6l.whl#sha256=72376de0d7e5c4f4d20e10701a5c6baff63266ad7b69da29dad270263fe92563 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,880 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc2-cp34-cp34m-linux_armv7l.whl#sha256=72376de0d7e5c4f4d20e10701a5c6baff63266ad7b69da29dad270263fe92563 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,880 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc2-cp35-cp35m-linux_armv7l.whl#sha256=9c5ac6c66ed3d66607fa12832a19ce4366c0826d3030e1cd84825d9eb80bedae (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,880 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc2-cp35-cp35m-linux_armv6l.whl#sha256=9c5ac6c66ed3d66607fa12832a19ce4366c0826d3030e1cd84825d9eb80bedae (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,880 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc1-cp35-cp35m-linux_armv6l.whl#sha256=ed50ded72e9ee0d18aa6c0a8b83d40251834554a543313f84e90041cdc18b9bd (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,881 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc1-cp35-cp35m-linux_armv7l.whl#sha256=ed50ded72e9ee0d18aa6c0a8b83d40251834554a543313f84e90041cdc18b9bd (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,881 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc1-cp34-cp34m-linux_armv7l.whl#sha256=243d9cd5d31c6c6b3f9be94fe3483f569f55cadc574b85a5f3850b0cc720a035 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,881 Skipping link: No binaries permitted for pydensecrf: https://archive1.piwheels.org/simple/pydensecrf/pydensecrf-1.0rc1-cp34-cp34m-linux_armv6l.whl#sha256=243d9cd5d31c6c6b3f9be94fe3483f569f55cadc574b85a5f3850b0cc720a035 (from https://www.piwheels.org/simple/pydensecrf/) 2025-09-08T11:56:41,881 Skipping link: not a file: https://www.piwheels.org/simple/pydensecrf/ 2025-09-08T11:56:41,881 Skipping link: not a file: https://pypi.org/simple/pydensecrf/ 2025-09-08T11:56:41,907 Given no hashes to check 1 links for project 'pydensecrf': discarding no candidates 2025-09-08T11:56:41,908 Collecting pydensecrf==1.0rc3 2025-09-08T11:56:41,910 Created temporary directory: /tmp/pip-unpack-25xwp1ux 2025-09-08T11:56:41,969 Downloading pydensecrf-1.0rc3.tar.gz (1.0 MB) 2025-09-08T11:56:42,389 Added pydensecrf==1.0rc3 from https://files.pythonhosted.org/packages/31/5a/1c2ab48e8019d282c128bc5c621332267bb954d32eecdda3ba57306b1551/pydensecrf-1.0rc3.tar.gz to build tracker '/tmp/pip-build-tracker-tka3q9li' 2025-09-08T11:56:42,390 Running setup.py (path:/tmp/pip-wheel-fb275lr7/pydensecrf_a9bf0e01907d4168aaf4403b59cea06d/setup.py) egg_info for package pydensecrf 2025-09-08T11:56:42,391 Created temporary directory: /tmp/pip-pip-egg-info-cap2kqvi 2025-09-08T11:56:42,391 Preparing metadata (setup.py): started 2025-09-08T11:56:42,391 Running command python setup.py egg_info 2025-09-08T11:56:44,285 Error compiling Cython file: 2025-09-08T11:56:44,285 ------------------------------------------------------------ 2025-09-08T11:56:44,285 ... 2025-09-08T11:56:44,285 from eigen cimport * 2025-09-08T11:56:44,286 ^ 2025-09-08T11:56:44,286 ------------------------------------------------------------ 2025-09-08T11:56:44,286 pydensecrf/densecrf.pxd:1:0: 'eigen.pxd' not found 2025-09-08T11:56:44,286 Error compiling Cython file: 2025-09-08T11:56:44,287 ------------------------------------------------------------ 2025-09-08T11:56:44,287 ... 2025-09-08T11:56:44,287 cdef cppclass PottsCompatibility(LabelCompatibility): 2025-09-08T11:56:44,287 PottsCompatibility(float) except + 2025-09-08T11:56:44,287 cdef cppclass DiagonalCompatibility(LabelCompatibility): 2025-09-08T11:56:44,287 DiagonalCompatibility(const c_VectorXf&) except + 2025-09-08T11:56:44,287 ^ 2025-09-08T11:56:44,288 ------------------------------------------------------------ 2025-09-08T11:56:44,288 pydensecrf/densecrf.pxd:12:36: 'c_VectorXf' is not a type identifier 2025-09-08T11:56:44,288 Error compiling Cython file: 2025-09-08T11:56:44,288 ------------------------------------------------------------ 2025-09-08T11:56:44,288 ... 2025-09-08T11:56:44,288 cdef cppclass DiagonalCompatibility(LabelCompatibility): 2025-09-08T11:56:44,289 DiagonalCompatibility(const c_VectorXf&) except + 2025-09-08T11:56:44,289 cdef cppclass MatrixCompatibility(LabelCompatibility): 2025-09-08T11:56:44,289 MatrixCompatibility(const c_MatrixXf&) except + 2025-09-08T11:56:44,289 ^ 2025-09-08T11:56:44,289 ------------------------------------------------------------ 2025-09-08T11:56:44,289 pydensecrf/densecrf.pxd:15:34: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,289 Error compiling Cython file: 2025-09-08T11:56:44,290 ------------------------------------------------------------ 2025-09-08T11:56:44,290 ... 2025-09-08T11:56:44,290 cdef extern from "densecrf/include/unary.h": 2025-09-08T11:56:44,290 cdef cppclass UnaryEnergy: 2025-09-08T11:56:44,290 pass 2025-09-08T11:56:44,290 cdef cppclass ConstUnaryEnergy(UnaryEnergy): 2025-09-08T11:56:44,290 ConstUnaryEnergy(const c_MatrixXf& unary) except + 2025-09-08T11:56:44,290 ^ 2025-09-08T11:56:44,290 ------------------------------------------------------------ 2025-09-08T11:56:44,291 pydensecrf/densecrf.pxd:23:31: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,291 Error compiling Cython file: 2025-09-08T11:56:44,291 ------------------------------------------------------------ 2025-09-08T11:56:44,291 ... 2025-09-08T11:56:44,291 cdef cppclass ConstUnaryEnergy(UnaryEnergy): 2025-09-08T11:56:44,291 ConstUnaryEnergy(const c_MatrixXf& unary) except + 2025-09-08T11:56:44,292 cdef cppclass LogisticUnaryEnergy(UnaryEnergy): 2025-09-08T11:56:44,292 LogisticUnaryEnergy(const c_MatrixXf& L, const c_MatrixXf& feature) except + 2025-09-08T11:56:44,292 ^ 2025-09-08T11:56:44,292 ------------------------------------------------------------ 2025-09-08T11:56:44,292 pydensecrf/densecrf.pxd:26:34: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,292 Error compiling Cython file: 2025-09-08T11:56:44,292 ------------------------------------------------------------ 2025-09-08T11:56:44,293 ... 2025-09-08T11:56:44,293 cdef cppclass ConstUnaryEnergy(UnaryEnergy): 2025-09-08T11:56:44,293 ConstUnaryEnergy(const c_MatrixXf& unary) except + 2025-09-08T11:56:44,293 cdef cppclass LogisticUnaryEnergy(UnaryEnergy): 2025-09-08T11:56:44,293 LogisticUnaryEnergy(const c_MatrixXf& L, const c_MatrixXf& feature) except + 2025-09-08T11:56:44,293 ^ 2025-09-08T11:56:44,293 ------------------------------------------------------------ 2025-09-08T11:56:44,294 pydensecrf/densecrf.pxd:26:55: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,294 Error compiling Cython file: 2025-09-08T11:56:44,294 ------------------------------------------------------------ 2025-09-08T11:56:44,294 ... 2025-09-08T11:56:44,294 c_DenseCRF(int N, int M) except + 2025-09-08T11:56:44,294 # Setup methods. 2025-09-08T11:56:44,295 # TODO 2025-09-08T11:56:44,295 #void addPairwiseEnergy(PairwisePotential *potential) 2025-09-08T11:56:44,295 void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType) 2025-09-08T11:56:44,295 ^ 2025-09-08T11:56:44,295 ------------------------------------------------------------ 2025-09-08T11:56:44,295 pydensecrf/densecrf.pxd:54:37: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,295 Error compiling Cython file: 2025-09-08T11:56:44,295 ------------------------------------------------------------ 2025-09-08T11:56:44,296 ... 2025-09-08T11:56:44,296 # Setup methods. 2025-09-08T11:56:44,296 # TODO 2025-09-08T11:56:44,296 #void addPairwiseEnergy(PairwisePotential *potential) 2025-09-08T11:56:44,296 void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType) 2025-09-08T11:56:44,296 void setUnaryEnergy(UnaryEnergy *unary) 2025-09-08T11:56:44,296 void setUnaryEnergy(const c_MatrixXf &unary) 2025-09-08T11:56:44,296 ^ 2025-09-08T11:56:44,296 ------------------------------------------------------------ 2025-09-08T11:56:44,297 pydensecrf/densecrf.pxd:56:34: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,297 Error compiling Cython file: 2025-09-08T11:56:44,297 ------------------------------------------------------------ 2025-09-08T11:56:44,297 ... 2025-09-08T11:56:44,297 # TODO 2025-09-08T11:56:44,297 #void addPairwiseEnergy(PairwisePotential *potential) 2025-09-08T11:56:44,297 void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType) 2025-09-08T11:56:44,297 void setUnaryEnergy(UnaryEnergy *unary) 2025-09-08T11:56:44,298 void setUnaryEnergy(const c_MatrixXf &unary) 2025-09-08T11:56:44,298 void setUnaryEnergy(const c_MatrixXf &L, const c_MatrixXf &feature) 2025-09-08T11:56:44,298 ^ 2025-09-08T11:56:44,298 ------------------------------------------------------------ 2025-09-08T11:56:44,298 pydensecrf/densecrf.pxd:57:34: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,298 Error compiling Cython file: 2025-09-08T11:56:44,298 ------------------------------------------------------------ 2025-09-08T11:56:44,299 ... 2025-09-08T11:56:44,299 # TODO 2025-09-08T11:56:44,299 #void addPairwiseEnergy(PairwisePotential *potential) 2025-09-08T11:56:44,299 void addPairwiseEnergy(const c_MatrixXf &features, LabelCompatibility*, KernelType, NormalizationType) 2025-09-08T11:56:44,299 void setUnaryEnergy(UnaryEnergy *unary) 2025-09-08T11:56:44,299 void setUnaryEnergy(const c_MatrixXf &unary) 2025-09-08T11:56:44,299 void setUnaryEnergy(const c_MatrixXf &L, const c_MatrixXf &feature) 2025-09-08T11:56:44,299 ^ 2025-09-08T11:56:44,299 ------------------------------------------------------------ 2025-09-08T11:56:44,300 pydensecrf/densecrf.pxd:57:55: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,300 Error compiling Cython file: 2025-09-08T11:56:44,300 ------------------------------------------------------------ 2025-09-08T11:56:44,300 ... 2025-09-08T11:56:44,300 void setUnaryEnergy(UnaryEnergy *unary) 2025-09-08T11:56:44,300 void setUnaryEnergy(const c_MatrixXf &unary) 2025-09-08T11:56:44,300 void setUnaryEnergy(const c_MatrixXf &L, const c_MatrixXf &feature) 2025-09-08T11:56:44,300 # Inference methods. 2025-09-08T11:56:44,301 c_MatrixXf inference(int n_iterations) 2025-09-08T11:56:44,301 ^ 2025-09-08T11:56:44,301 ------------------------------------------------------------ 2025-09-08T11:56:44,301 pydensecrf/densecrf.pxd:60:8: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,301 Error compiling Cython file: 2025-09-08T11:56:44,301 ------------------------------------------------------------ 2025-09-08T11:56:44,301 ... 2025-09-08T11:56:44,302 c_MatrixXf inference(int n_iterations) 2025-09-08T11:56:44,302 # TODO: Not enabled because it would require wrapping VectorXs (note the `s`) 2025-09-08T11:56:44,302 #c_VectorXs map(int n_iterations) 2025-09-08T11:56:44,302 # Step-by-step inference methods. 2025-09-08T11:56:44,302 c_MatrixXf startInference() const 2025-09-08T11:56:44,302 ^ 2025-09-08T11:56:44,302 ------------------------------------------------------------ 2025-09-08T11:56:44,302 pydensecrf/densecrf.pxd:65:8: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,303 Error compiling Cython file: 2025-09-08T11:56:44,303 ------------------------------------------------------------ 2025-09-08T11:56:44,303 ... 2025-09-08T11:56:44,303 # TODO: Not enabled because it would require wrapping VectorXs (note the `s`) 2025-09-08T11:56:44,303 #c_VectorXs map(int n_iterations) 2025-09-08T11:56:44,303 # Step-by-step inference methods. 2025-09-08T11:56:44,303 c_MatrixXf startInference() const 2025-09-08T11:56:44,303 void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const 2025-09-08T11:56:44,304 ^ 2025-09-08T11:56:44,304 ------------------------------------------------------------ 2025-09-08T11:56:44,304 pydensecrf/densecrf.pxd:66:27: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,304 Error compiling Cython file: 2025-09-08T11:56:44,304 ------------------------------------------------------------ 2025-09-08T11:56:44,304 ... 2025-09-08T11:56:44,304 # TODO: Not enabled because it would require wrapping VectorXs (note the `s`) 2025-09-08T11:56:44,304 #c_VectorXs map(int n_iterations) 2025-09-08T11:56:44,305 # Step-by-step inference methods. 2025-09-08T11:56:44,305 c_MatrixXf startInference() const 2025-09-08T11:56:44,305 void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const 2025-09-08T11:56:44,305 ^ 2025-09-08T11:56:44,305 ------------------------------------------------------------ 2025-09-08T11:56:44,305 pydensecrf/densecrf.pxd:66:42: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,305 Error compiling Cython file: 2025-09-08T11:56:44,305 ------------------------------------------------------------ 2025-09-08T11:56:44,305 ... 2025-09-08T11:56:44,305 # TODO: Not enabled because it would require wrapping VectorXs (note the `s`) 2025-09-08T11:56:44,306 #c_VectorXs map(int n_iterations) 2025-09-08T11:56:44,306 # Step-by-step inference methods. 2025-09-08T11:56:44,306 c_MatrixXf startInference() const 2025-09-08T11:56:44,306 void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const 2025-09-08T11:56:44,306 ^ 2025-09-08T11:56:44,306 ------------------------------------------------------------ 2025-09-08T11:56:44,306 pydensecrf/densecrf.pxd:66:60: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,306 Error compiling Cython file: 2025-09-08T11:56:44,307 ------------------------------------------------------------ 2025-09-08T11:56:44,307 ... 2025-09-08T11:56:44,307 # Step-by-step inference methods. 2025-09-08T11:56:44,307 c_MatrixXf startInference() const 2025-09-08T11:56:44,307 void stepInference(c_MatrixXf &Q, c_MatrixXf &tmp1, c_MatrixXf &tmp2) const 2025-09-08T11:56:44,307 #double gradient( int n_iterations, const ObjectiveFunction & objective, c_VectorXf * unary_grad, c_VectorXf * lbl_cmp_grad, c_VectorXf * kernel_grad=NULL ) const; 2025-09-08T11:56:44,307 double klDivergence(const c_MatrixXf &Q) const 2025-09-08T11:56:44,307 ^ 2025-09-08T11:56:44,307 ------------------------------------------------------------ 2025-09-08T11:56:44,308 pydensecrf/densecrf.pxd:69:34: 'c_MatrixXf' is not a type identifier 2025-09-08T11:56:44,328 warning: pydensecrf/densecrf.pyx:20:4: Unreachable code 2025-09-08T11:56:44,795 Error compiling Cython file: 2025-09-08T11:56:44,795 ------------------------------------------------------------ 2025-09-08T11:56:44,795 ... 2025-09-08T11:56:44,795 return eigen.MatrixXf().wrap(self._this.inference(niter)) 2025-09-08T11:56:44,795 def startInference(self): 2025-09-08T11:56:44,796 return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf() 2025-09-08T11:56:44,796 def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2): 2025-09-08T11:56:44,796 ^ 2025-09-08T11:56:44,796 ------------------------------------------------------------ 2025-09-08T11:56:44,796 pydensecrf/densecrf.pyx:97:28: 'MatrixXf' is not a type identifier 2025-09-08T11:56:44,796 Error compiling Cython file: 2025-09-08T11:56:44,796 ------------------------------------------------------------ 2025-09-08T11:56:44,797 ... 2025-09-08T11:56:44,797 return eigen.MatrixXf().wrap(self._this.inference(niter)) 2025-09-08T11:56:44,797 def startInference(self): 2025-09-08T11:56:44,797 return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf() 2025-09-08T11:56:44,797 def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2): 2025-09-08T11:56:44,797 ^ 2025-09-08T11:56:44,797 ------------------------------------------------------------ 2025-09-08T11:56:44,798 pydensecrf/densecrf.pyx:97:40: 'MatrixXf' is not a type identifier 2025-09-08T11:56:44,798 Error compiling Cython file: 2025-09-08T11:56:44,798 ------------------------------------------------------------ 2025-09-08T11:56:44,798 ... 2025-09-08T11:56:44,798 return eigen.MatrixXf().wrap(self._this.inference(niter)) 2025-09-08T11:56:44,798 def startInference(self): 2025-09-08T11:56:44,798 return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf() 2025-09-08T11:56:44,799 def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2): 2025-09-08T11:56:44,799 ^ 2025-09-08T11:56:44,799 ------------------------------------------------------------ 2025-09-08T11:56:44,799 pydensecrf/densecrf.pyx:97:55: 'MatrixXf' is not a type identifier 2025-09-08T11:56:44,799 Error compiling Cython file: 2025-09-08T11:56:44,799 ------------------------------------------------------------ 2025-09-08T11:56:44,799 ... 2025-09-08T11:56:44,799 return eigen.MatrixXf().wrap(self._this.startInference()), eigen.MatrixXf(), eigen.MatrixXf() 2025-09-08T11:56:44,799 def stepInference(self, MatrixXf Q, MatrixXf tmp1, MatrixXf tmp2): 2025-09-08T11:56:44,800 self._this.stepInference(Q.m, tmp1.m, tmp2.m) 2025-09-08T11:56:44,800 def klDivergence(self, MatrixXf Q): 2025-09-08T11:56:44,800 ^ 2025-09-08T11:56:44,800 ------------------------------------------------------------ 2025-09-08T11:56:44,800 pydensecrf/densecrf.pyx:100:27: 'MatrixXf' is not a type identifier 2025-09-08T11:56:45,846 Traceback (most recent call last): 2025-09-08T11:56:45,848 File "", line 2, in 2025-09-08T11:56:45,848 exec(compile(''' 2025-09-08T11:56:45,848 ~~~~^^^^^^^^^^^^ 2025-09-08T11:56:45,849 # This is -- a caller that pip uses to run setup.py 2025-09-08T11:56:45,849 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:45,849 ...<32 lines>... 2025-09-08T11:56:45,849 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T11:56:45,849 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:45,849 ''' % ('/tmp/pip-wheel-fb275lr7/pydensecrf_a9bf0e01907d4168aaf4403b59cea06d/setup.py',), "", "exec")) 2025-09-08T11:56:45,849 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:45,849 File "", line 35, in 2025-09-08T11:56:45,850 File "/tmp/pip-wheel-fb275lr7/pydensecrf_a9bf0e01907d4168aaf4403b59cea06d/setup.py", line 13, in 2025-09-08T11:56:45,850 ext_modules = cythonize(['pydensecrf/eigen.pyx', 'pydensecrf/densecrf.pyx']) 2025-09-08T11:56:45,850 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T11:56:45,850 cythonize_one(*args) 2025-09-08T11:56:45,850 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T11:56:45,850 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T11:56:45,850 raise CompileError(None, pyx_file) 2025-09-08T11:56:45,850 Cython.Compiler.Errors.CompileError: pydensecrf/densecrf.pyx 2025-09-08T11:56:45,851 Compiling pydensecrf/eigen.pyx because it changed. 2025-09-08T11:56:45,851 Compiling pydensecrf/densecrf.pyx because it changed. 2025-09-08T11:56:45,851 [1/2] Cythonizing pydensecrf/densecrf.pyx 2025-09-08T11:56:46,276 ERROR: python setup.py egg_info exited with 1 2025-09-08T11:56:46,288 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T11:56:46,288 exec(compile('"'"''"'"''"'"' 2025-09-08T11:56:46,288 # This is -- a caller that pip uses to run setup.py 2025-09-08T11:56:46,288 # 2025-09-08T11:56:46,288 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T11:56:46,288 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T11:56:46,288 # - It provides a clear error message when setuptools is not installed. 2025-09-08T11:56:46,288 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T11:56:46,288 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T11:56:46,288 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T11:56:46,288 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T11:56:46,288 import os, sys, tokenize, traceback 2025-09-08T11:56:46,288 2025-09-08T11:56:46,288 try: 2025-09-08T11:56:46,288 import setuptools 2025-09-08T11:56:46,288 except ImportError: 2025-09-08T11:56:46,288 print( 2025-09-08T11:56:46,288 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T11:56:46,288 "the build environment with exception:", 2025-09-08T11:56:46,288 file=sys.stderr, 2025-09-08T11:56:46,288 ) 2025-09-08T11:56:46,288 traceback.print_exc() 2025-09-08T11:56:46,288 sys.exit(1) 2025-09-08T11:56:46,288 2025-09-08T11:56:46,288 __file__ = %r 2025-09-08T11:56:46,288 sys.argv[0] = __file__ 2025-09-08T11:56:46,288 2025-09-08T11:56:46,288 if os.path.exists(__file__): 2025-09-08T11:56:46,288 filename = __file__ 2025-09-08T11:56:46,288 with tokenize.open(__file__) as f: 2025-09-08T11:56:46,288 setup_py_code = f.read() 2025-09-08T11:56:46,288 else: 2025-09-08T11:56:46,288 filename = "" 2025-09-08T11:56:46,288 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T11:56:46,288 2025-09-08T11:56:46,288 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T11:56:46,288 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-fb275lr7/pydensecrf_a9bf0e01907d4168aaf4403b59cea06d/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-cap2kqvi[/] 2025-09-08T11:56:46,289 [bold magenta]cwd[/]: /tmp/pip-wheel-fb275lr7/pydensecrf_a9bf0e01907d4168aaf4403b59cea06d/ 2025-09-08T11:56:46,289 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T11:56:46,290 ERROR: metadata generation failed 2025-09-08T11:56:46,296 Exception information: 2025-09-08T11:56:46,296 Traceback (most recent call last): 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T11:56:46,296 call_subprocess( 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~~~^ 2025-09-08T11:56:46,296 args, 2025-09-08T11:56:46,296 ^^^^^ 2025-09-08T11:56:46,296 ...<2 lines>... 2025-09-08T11:56:46,296 spinner=spinner, 2025-09-08T11:56:46,296 ^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 ) 2025-09-08T11:56:46,296 ^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T11:56:46,296 raise error 2025-09-08T11:56:46,296 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T11:56:46,296 2025-09-08T11:56:46,296 The above exception was the direct cause of the following exception: 2025-09-08T11:56:46,296 2025-09-08T11:56:46,296 Traceback (most recent call last): 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T11:56:46,296 status = _inner_run() 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T11:56:46,296 return self.run(options, args) 2025-09-08T11:56:46,296 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T11:56:46,296 return func(self, options, args) 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T11:56:46,296 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T11:56:46,296 result = self._result = resolver.resolve( 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~~~~^ 2025-09-08T11:56:46,296 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T11:56:46,296 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 ) 2025-09-08T11:56:46,296 ^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T11:56:46,296 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T11:56:46,296 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T11:56:46,296 if not criterion.candidates: 2025-09-08T11:56:46,296 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T11:56:46,296 return bool(self._sequence) 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T11:56:46,296 self._bool = any(self) 2025-09-08T11:56:46,296 ~~~^^^^^^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T11:56:46,296 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T11:56:46,296 ^^^^^^^^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T11:56:46,296 candidate = func() 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T11:56:46,296 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T11:56:46,296 link, template, name, version 2025-09-08T11:56:46,296 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 ) 2025-09-08T11:56:46,296 ^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T11:56:46,296 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~^ 2025-09-08T11:56:46,296 link, 2025-09-08T11:56:46,296 ^^^^^ 2025-09-08T11:56:46,296 ...<3 lines>... 2025-09-08T11:56:46,296 version=version, 2025-09-08T11:56:46,296 ^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 ) 2025-09-08T11:56:46,296 ^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T11:56:46,296 super().__init__( 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~~~~^ 2025-09-08T11:56:46,296 link=link, 2025-09-08T11:56:46,296 ^^^^^^^^^^ 2025-09-08T11:56:46,296 ...<4 lines>... 2025-09-08T11:56:46,296 version=version, 2025-09-08T11:56:46,296 ^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 ) 2025-09-08T11:56:46,296 ^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T11:56:46,296 self.dist = self._prepare() 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~^^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T11:56:46,296 dist = self._prepare_distribution() 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T11:56:46,296 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T11:56:46,296 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T11:56:46,296 dist = _get_prepared_distribution( 2025-09-08T11:56:46,296 req, 2025-09-08T11:56:46,296 ...<3 lines>... 2025-09-08T11:56:46,296 self.check_build_deps, 2025-09-08T11:56:46,296 ) 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T11:56:46,296 abstract_dist.prepare_distribution_metadata( 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T11:56:46,296 finder, build_isolation, check_build_deps 2025-09-08T11:56:46,296 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 ) 2025-09-08T11:56:46,296 ^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T11:56:46,296 self.req.prepare_metadata() 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T11:56:46,296 self.metadata_directory = generate_metadata_legacy( 2025-09-08T11:56:46,296 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T11:56:46,296 build_env=self.build_env, 2025-09-08T11:56:46,296 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 ...<3 lines>... 2025-09-08T11:56:46,296 details=details, 2025-09-08T11:56:46,296 ^^^^^^^^^^^^^^^^ 2025-09-08T11:56:46,296 ) 2025-09-08T11:56:46,296 ^ 2025-09-08T11:56:46,296 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T11:56:46,296 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T11:56:46,296 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T11:56:46,319 Removed pydensecrf==1.0rc3 from https://files.pythonhosted.org/packages/31/5a/1c2ab48e8019d282c128bc5c621332267bb954d32eecdda3ba57306b1551/pydensecrf-1.0rc3.tar.gz from build tracker '/tmp/pip-build-tracker-tka3q9li' 2025-09-08T11:56:46,319 Removed build tracker: '/tmp/pip-build-tracker-tka3q9li'