2025-09-08T12:07:58,878 Created temporary directory: /tmp/pip-build-tracker-wp7m5b71
2025-09-08T12:07:58,879 Initialized build tracking at /tmp/pip-build-tracker-wp7m5b71
2025-09-08T12:07:58,879 Created build tracker: /tmp/pip-build-tracker-wp7m5b71
2025-09-08T12:07:58,879 Entered build tracker: /tmp/pip-build-tracker-wp7m5b71
2025-09-08T12:07:58,880 Created temporary directory: /tmp/pip-wheel-_vmdbty9
2025-09-08T12:07:58,883 Created temporary directory: /tmp/pip-ephem-wheel-cache-k1h524ry
2025-09-08T12:07:58,944 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T12:07:58,947 2 location(s) to search for versions of budeff:
2025-09-08T12:07:58,947 * https://pypi.org/simple/budeff/
2025-09-08T12:07:58,947 * https://www.piwheels.org/simple/budeff/
2025-09-08T12:07:58,947 Fetching project page and analyzing links: https://pypi.org/simple/budeff/
2025-09-08T12:07:58,947 Getting page https://pypi.org/simple/budeff/
2025-09-08T12:07:58,948 Found index url https://pypi.org/simple/
2025-09-08T12:07:59,154 Fetched page https://pypi.org/simple/budeff/ as application/vnd.pypi.simple.v1+json
2025-09-08T12:07:59,155   Found link https://files.pythonhosted.org/packages/33/89/a7ea41131ab0db5c4232902ede026d5c21e05966b3abe59b84600fbb947d/BUDEFF-1.0.0.tar.gz (from https://pypi.org/simple/budeff/), version: 1.0.0
2025-09-08T12:07:59,156 Fetching project page and analyzing links: https://www.piwheels.org/simple/budeff/
2025-09-08T12:07:59,156 Getting page https://www.piwheels.org/simple/budeff/
2025-09-08T12:07:59,158 Found index url https://www.piwheels.org/simple/
2025-09-08T12:07:59,254 Fetched page https://www.piwheels.org/simple/budeff/ as text/html
2025-09-08T12:07:59,256   Skipping link: No binaries permitted for budeff: https://archive1.piwheels.org/simple/budeff/BUDEFF-1.0.0-cp34-cp34m-linux_armv6l.whl#sha256=89eb5e1e32f621677cdaaf36edb33ff160236be038e2f10726ab4a56bbe1c5b0 (from https://www.piwheels.org/simple/budeff/)
2025-09-08T12:07:59,256   Skipping link: No binaries permitted for budeff: https://archive1.piwheels.org/simple/budeff/BUDEFF-1.0.0-cp34-cp34m-linux_armv7l.whl#sha256=89eb5e1e32f621677cdaaf36edb33ff160236be038e2f10726ab4a56bbe1c5b0 (from https://www.piwheels.org/simple/budeff/)
2025-09-08T12:07:59,257   Skipping link: No binaries permitted for budeff: https://archive1.piwheels.org/simple/budeff/BUDEFF-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=449097c2a81c88c152a4521e2e73c51ce8e81b119f8e33dd6aa06e1fd31bfed9 (from https://www.piwheels.org/simple/budeff/)
2025-09-08T12:07:59,257   Skipping link: No binaries permitted for budeff: https://archive1.piwheels.org/simple/budeff/BUDEFF-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=449097c2a81c88c152a4521e2e73c51ce8e81b119f8e33dd6aa06e1fd31bfed9 (from https://www.piwheels.org/simple/budeff/)
2025-09-08T12:07:59,257   Skipping link: No binaries permitted for budeff: https://archive1.piwheels.org/simple/budeff/BUDEFF-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=713164ea5d2d9fb8c125f04cfcb6c8b1d9aa37d224bfb008eb39044350117e76 (from https://www.piwheels.org/simple/budeff/)
2025-09-08T12:07:59,257   Skipping link: No binaries permitted for budeff: https://archive1.piwheels.org/simple/budeff/BUDEFF-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=713164ea5d2d9fb8c125f04cfcb6c8b1d9aa37d224bfb008eb39044350117e76 (from https://www.piwheels.org/simple/budeff/)
2025-09-08T12:07:59,257 Skipping link: not a file: https://www.piwheels.org/simple/budeff/
2025-09-08T12:07:59,257 Skipping link: not a file: https://pypi.org/simple/budeff/
2025-09-08T12:07:59,282 Given no hashes to check 1 links for project 'budeff': discarding no candidates
2025-09-08T12:07:59,283 Collecting budeff==1.0.0
2025-09-08T12:07:59,284   Created temporary directory: /tmp/pip-unpack-hjuw9v4b
2025-09-08T12:07:59,419   Downloading BUDEFF-1.0.0.tar.gz (85 kB)
2025-09-08T12:07:59,475   Added budeff==1.0.0 from https://files.pythonhosted.org/packages/33/89/a7ea41131ab0db5c4232902ede026d5c21e05966b3abe59b84600fbb947d/BUDEFF-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-wp7m5b71'
2025-09-08T12:07:59,476   Running setup.py (path:/tmp/pip-wheel-_vmdbty9/budeff_fbbc886f80d24d76a3cf01e5bf296c0e/setup.py) egg_info for package budeff
2025-09-08T12:07:59,477   Created temporary directory: /tmp/pip-pip-egg-info-qvkvl_qp
2025-09-08T12:07:59,477   Preparing metadata (setup.py): started
2025-09-08T12:07:59,478   Running command python setup.py egg_info
2025-09-08T12:08:00,194   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/extension.py:150: UserWarning: Unknown Extension options: 'include_dir'
2025-09-08T12:08:00,194     warnings.warn(msg)
2025-09-08T12:08:02,198   Compiling src/budeff/calculate_energy.pyx because it changed.
2025-09-08T12:08:02,198   [1/1] Cythonizing src/budeff/calculate_energy.pyx
2025-09-08T12:08:02,660   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T12:08:02,660   !!

2025-09-08T12:08:02,660           ********************************************************************************
2025-09-08T12:08:02,661           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T12:08:02,661           License :: OSI Approved :: MIT License

2025-09-08T12:08:02,661           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T12:08:02,661           ********************************************************************************

2025-09-08T12:08:02,661   !!
2025-09-08T12:08:02,661     self._finalize_license_expression()
2025-09-08T12:08:02,734   running egg_info
2025-09-08T12:08:02,807   creating /tmp/pip-pip-egg-info-qvkvl_qp/BUDEFF.egg-info
2025-09-08T12:08:02,807   writing /tmp/pip-pip-egg-info-qvkvl_qp/BUDEFF.egg-info/PKG-INFO
2025-09-08T12:08:02,808   writing dependency_links to /tmp/pip-pip-egg-info-qvkvl_qp/BUDEFF.egg-info/dependency_links.txt
2025-09-08T12:08:02,809   writing requirements to /tmp/pip-pip-egg-info-qvkvl_qp/BUDEFF.egg-info/requires.txt
2025-09-08T12:08:02,809   writing top-level names to /tmp/pip-pip-egg-info-qvkvl_qp/BUDEFF.egg-info/top_level.txt
2025-09-08T12:08:02,810   writing manifest file '/tmp/pip-pip-egg-info-qvkvl_qp/BUDEFF.egg-info/SOURCES.txt'
2025-09-08T12:08:03,101   reading manifest file '/tmp/pip-pip-egg-info-qvkvl_qp/BUDEFF.egg-info/SOURCES.txt'
2025-09-08T12:08:03,102   reading manifest template 'MANIFEST.in'
2025-09-08T12:08:03,104   adding license file 'LICENSE'
2025-09-08T12:08:03,106   writing manifest file '/tmp/pip-pip-egg-info-qvkvl_qp/BUDEFF.egg-info/SOURCES.txt'
2025-09-08T12:08:03,405   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T12:08:03,410   Source in /tmp/pip-wheel-_vmdbty9/budeff_fbbc886f80d24d76a3cf01e5bf296c0e has version 1.0.0, which satisfies requirement budeff==1.0.0 from https://files.pythonhosted.org/packages/33/89/a7ea41131ab0db5c4232902ede026d5c21e05966b3abe59b84600fbb947d/BUDEFF-1.0.0.tar.gz
2025-09-08T12:08:03,410   Removed budeff==1.0.0 from https://files.pythonhosted.org/packages/33/89/a7ea41131ab0db5c4232902ede026d5c21e05966b3abe59b84600fbb947d/BUDEFF-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-wp7m5b71'
2025-09-08T12:08:03,415 Created temporary directory: /tmp/pip-unpack-id8hgaci
2025-09-08T12:08:03,415 Created temporary directory: /tmp/pip-unpack-a6rraohf
2025-09-08T12:08:03,415 Building wheels for collected packages: budeff
2025-09-08T12:08:03,417   Created temporary directory: /tmp/pip-wheel-n6kp4t98
2025-09-08T12:08:03,417   DEPRECATION: Building 'budeff' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'budeff'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T12:08:03,419   Building wheel for budeff (setup.py): started
2025-09-08T12:08:03,419   Destination directory: /tmp/pip-wheel-n6kp4t98
2025-09-08T12:08:03,420   Running command python setup.py bdist_wheel
2025-09-08T12:08:04,136   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/extension.py:150: UserWarning: Unknown Extension options: 'include_dir'
2025-09-08T12:08:04,136     warnings.warn(msg)
2025-09-08T12:08:04,895   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T12:08:04,895   !!

2025-09-08T12:08:04,895           ********************************************************************************
2025-09-08T12:08:04,895           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T12:08:04,895           License :: OSI Approved :: MIT License

2025-09-08T12:08:04,896           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T12:08:04,896           ********************************************************************************

2025-09-08T12:08:04,896   !!
2025-09-08T12:08:04,896     self._finalize_license_expression()
2025-09-08T12:08:04,896   running bdist_wheel
2025-09-08T12:08:05,256   running build
2025-09-08T12:08:05,257   running build_py
2025-09-08T12:08:05,333   creating build/lib.linux-armv7l-cpython-313/budeff
2025-09-08T12:08:05,333   copying src/budeff/force_field.py -> build/lib.linux-armv7l-cpython-313/budeff
2025-09-08T12:08:05,334   copying src/budeff/__init__.py -> build/lib.linux-armv7l-cpython-313/budeff
2025-09-08T12:08:05,334   running egg_info
2025-09-08T12:08:05,407   writing src/BUDEFF.egg-info/PKG-INFO
2025-09-08T12:08:05,408   writing dependency_links to src/BUDEFF.egg-info/dependency_links.txt
2025-09-08T12:08:05,409   writing requirements to src/BUDEFF.egg-info/requires.txt
2025-09-08T12:08:05,409   writing top-level names to src/BUDEFF.egg-info/top_level.txt
2025-09-08T12:08:05,485   reading manifest file 'src/BUDEFF.egg-info/SOURCES.txt'
2025-09-08T12:08:05,487   reading manifest template 'MANIFEST.in'
2025-09-08T12:08:05,489   adding license file 'LICENSE'
2025-09-08T12:08:05,492   writing manifest file 'src/BUDEFF.egg-info/SOURCES.txt'
2025-09-08T12:08:05,493   /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'budeff.force_fields' is absent from the `packages` configuration.
2025-09-08T12:08:05,493   !!

2025-09-08T12:08:05,493           ********************************************************************************
2025-09-08T12:08:05,494           ############################
2025-09-08T12:08:05,494           # Package would be ignored #
2025-09-08T12:08:05,494           ############################
2025-09-08T12:08:05,494           Python recognizes 'budeff.force_fields' as an importable package[^1],
2025-09-08T12:08:05,494           but it is absent from setuptools' `packages` configuration.

2025-09-08T12:08:05,494           This leads to an ambiguous overall configuration. If you want to distribute this
2025-09-08T12:08:05,494           package, please make sure that 'budeff.force_fields' is explicitly added
2025-09-08T12:08:05,494           to the `packages` configuration field.

2025-09-08T12:08:05,494           Alternatively, you can also rely on setuptools' discovery methods
2025-09-08T12:08:05,495           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-09-08T12:08:05,495           instead of `find_packages(...)`/`find:`).

2025-09-08T12:08:05,495           You can read more about "package discovery" on setuptools documentation page:

2025-09-08T12:08:05,495           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-09-08T12:08:05,495           If you don't want 'budeff.force_fields' to be distributed and are
2025-09-08T12:08:05,495           already explicitly excluding 'budeff.force_fields' via
2025-09-08T12:08:05,495           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-09-08T12:08:05,495           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-09-08T12:08:05,496           combination with a more fine grained `package-data` configuration.

2025-09-08T12:08:05,496           You can read more about "package data files" on setuptools documentation page:

2025-09-08T12:08:05,496           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-09-08T12:08:05,496           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-09-08T12:08:05,496                 even if it does not contain any `.py` files.
2025-09-08T12:08:05,496                 On the other hand, currently there is no concept of package data
2025-09-08T12:08:05,496                 directory, all directories are treated like packages.
2025-09-08T12:08:05,497           ********************************************************************************

2025-09-08T12:08:05,497   !!
2025-09-08T12:08:05,497     check.warn(importable)
2025-09-08T12:08:05,497   copying src/budeff/calculateEnergies.cpp -> build/lib.linux-armv7l-cpython-313/budeff
2025-09-08T12:08:05,497   copying src/budeff/calculate_energy.cpp -> build/lib.linux-armv7l-cpython-313/budeff
2025-09-08T12:08:05,498   copying src/budeff/calculate_energy.pyx -> build/lib.linux-armv7l-cpython-313/budeff
2025-09-08T12:08:05,499   copying src/budeff/dataClasses.hpp -> build/lib.linux-armv7l-cpython-313/budeff
2025-09-08T12:08:05,499   creating build/lib.linux-armv7l-cpython-313/budeff/force_fields
2025-09-08T12:08:05,500   copying src/budeff/force_fields/bude_2015v1.json -> build/lib.linux-armv7l-cpython-313/budeff/force_fields
2025-09-08T12:08:05,500   copying src/budeff/force_fields/bude_2016v1.json -> build/lib.linux-armv7l-cpython-313/budeff/force_fields
2025-09-08T12:08:05,501   running build_ext
2025-09-08T12:08:05,508   building 'budeff.calculate_energy' extension
2025-09-08T12:08:05,509   creating build/temp.linux-armv7l-cpython-313/src/budeff
2025-09-08T12:08:05,509   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc/budeff -I/usr/include/python3.13 -c src/budeff/calculate_energy.cpp -o build/temp.linux-armv7l-cpython-313/src/budeff/calculate_energy.o
2025-09-08T12:08:24,594   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/src/budeff/calculate_energy.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/budeff/calculate_energy.cpython-313-arm-linux-gnueabihf.so
2025-09-08T12:08:24,960   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T12:08:24,961   !!

2025-09-08T12:08:24,961           ********************************************************************************
2025-09-08T12:08:24,961           Please avoid running ``setup.py`` directly.
2025-09-08T12:08:24,961           Instead, use pypa/build, pypa/installer or other
2025-09-08T12:08:24,961           standards-based tools.

2025-09-08T12:08:24,961           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T12:08:24,962           or your builds will no longer be supported.

2025-09-08T12:08:24,962           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T12:08:24,962           ********************************************************************************

2025-09-08T12:08:24,962   !!
2025-09-08T12:08:24,962     self.initialize_options()
2025-09-08T12:08:25,034   installing to build/bdist.linux-armv7l/wheel
2025-09-08T12:08:25,034   running install
2025-09-08T12:08:25,057   running install_lib
2025-09-08T12:08:25,130   creating build/bdist.linux-armv7l/wheel
2025-09-08T12:08:25,131   creating build/bdist.linux-armv7l/wheel/budeff
2025-09-08T12:08:25,131   copying build/lib.linux-armv7l-cpython-313/budeff/calculate_energy.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./budeff
2025-09-08T12:08:25,136   creating build/bdist.linux-armv7l/wheel/budeff/force_fields
2025-09-08T12:08:25,136   copying build/lib.linux-armv7l-cpython-313/budeff/force_fields/bude_2016v1.json -> build/bdist.linux-armv7l/wheel/./budeff/force_fields
2025-09-08T12:08:25,136   copying build/lib.linux-armv7l-cpython-313/budeff/force_fields/bude_2015v1.json -> build/bdist.linux-armv7l/wheel/./budeff/force_fields
2025-09-08T12:08:25,137   copying build/lib.linux-armv7l-cpython-313/budeff/dataClasses.hpp -> build/bdist.linux-armv7l/wheel/./budeff
2025-09-08T12:08:25,137   copying build/lib.linux-armv7l-cpython-313/budeff/calculate_energy.pyx -> build/bdist.linux-armv7l/wheel/./budeff
2025-09-08T12:08:25,138   copying build/lib.linux-armv7l-cpython-313/budeff/calculate_energy.cpp -> build/bdist.linux-armv7l/wheel/./budeff
2025-09-08T12:08:25,141   copying build/lib.linux-armv7l-cpython-313/budeff/calculateEnergies.cpp -> build/bdist.linux-armv7l/wheel/./budeff
2025-09-08T12:08:25,141   copying build/lib.linux-armv7l-cpython-313/budeff/__init__.py -> build/bdist.linux-armv7l/wheel/./budeff
2025-09-08T12:08:25,142   copying build/lib.linux-armv7l-cpython-313/budeff/force_field.py -> build/bdist.linux-armv7l/wheel/./budeff
2025-09-08T12:08:25,142   running install_egg_info
2025-09-08T12:08:25,219   Copying src/BUDEFF.egg-info to build/bdist.linux-armv7l/wheel/./BUDEFF-1.0.0-py3.13.egg-info
2025-09-08T12:08:25,221   running install_scripts
2025-09-08T12:08:25,270   creating build/bdist.linux-armv7l/wheel/budeff-1.0.0.dist-info/WHEEL
2025-09-08T12:08:25,271   creating '/tmp/pip-wheel-n6kp4t98/budeff-1.0.0-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-08T12:08:25,273   adding 'budeff/__init__.py'
2025-09-08T12:08:25,274   adding 'budeff/calculateEnergies.cpp'
2025-09-08T12:08:25,336   adding 'budeff/calculate_energy.cpp'
2025-09-08T12:08:25,551   adding 'budeff/calculate_energy.cpython-313-arm-linux-gnueabihf.so'
2025-09-08T12:08:25,559   adding 'budeff/calculate_energy.pyx'
2025-09-08T12:08:25,560   adding 'budeff/dataClasses.hpp'
2025-09-08T12:08:25,561   adding 'budeff/force_field.py'
2025-09-08T12:08:25,562   adding 'budeff/force_fields/bude_2015v1.json'
2025-09-08T12:08:25,563   adding 'budeff/force_fields/bude_2016v1.json'
2025-09-08T12:08:25,564   adding 'budeff-1.0.0.dist-info/licenses/LICENSE'
2025-09-08T12:08:25,565   adding 'budeff-1.0.0.dist-info/METADATA'
2025-09-08T12:08:25,566   adding 'budeff-1.0.0.dist-info/WHEEL'
2025-09-08T12:08:25,566   adding 'budeff-1.0.0.dist-info/top_level.txt'
2025-09-08T12:08:25,567   adding 'budeff-1.0.0.dist-info/RECORD'
2025-09-08T12:08:25,567   removing build/bdist.linux-armv7l/wheel
2025-09-08T12:08:25,715   Building wheel for budeff (setup.py): finished with status 'done'
2025-09-08T12:08:25,722   Created wheel for budeff: filename=budeff-1.0.0-cp313-cp313-linux_armv7l.whl size=529570 sha256=edd75a935e9f12ddea5736c77dfda7855affbb7f8e7ea73f8a80bd797baea0c7
2025-09-08T12:08:25,722   Stored in directory: /tmp/pip-ephem-wheel-cache-k1h524ry/wheels/1f/7d/bd/7b10f369ed5381fa1df4ef7e1a67443b6e06e7cc8aac9af97c
2025-09-08T12:08:25,731 Successfully built budeff
2025-09-08T12:08:25,734 Removed build tracker: '/tmp/pip-build-tracker-wp7m5b71'