2025-09-08T12:09:18,487 Created temporary directory: /tmp/pip-build-tracker-27o8_p7p 2025-09-08T12:09:18,488 Initialized build tracking at /tmp/pip-build-tracker-27o8_p7p 2025-09-08T12:09:18,488 Created build tracker: /tmp/pip-build-tracker-27o8_p7p 2025-09-08T12:09:18,488 Entered build tracker: /tmp/pip-build-tracker-27o8_p7p 2025-09-08T12:09:18,488 Created temporary directory: /tmp/pip-wheel-ovuc8t7z 2025-09-08T12:09:18,491 Created temporary directory: /tmp/pip-ephem-wheel-cache-w5duf0k4 2025-09-08T12:09:18,549 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T12:09:18,551 2 location(s) to search for versions of icgc-data-parser: 2025-09-08T12:09:18,551 * https://pypi.org/simple/icgc-data-parser/ 2025-09-08T12:09:18,551 * https://www.piwheels.org/simple/icgc-data-parser/ 2025-09-08T12:09:18,552 Fetching project page and analyzing links: https://pypi.org/simple/icgc-data-parser/ 2025-09-08T12:09:18,552 Getting page https://pypi.org/simple/icgc-data-parser/ 2025-09-08T12:09:18,553 Found index url https://pypi.org/simple/ 2025-09-08T12:09:18,700 Fetched page https://pypi.org/simple/icgc-data-parser/ as application/vnd.pypi.simple.v1+json 2025-09-08T12:09:18,703 Found link https://files.pythonhosted.org/packages/66/4e/ac497d6fafbbdb3afd8a34f5b14fa5baf887bab7b03b11d1b37415f1b908/ICGC-data-parser-0.1.0.tar.gz (from https://pypi.org/simple/icgc-data-parser/), version: 0.1.0 2025-09-08T12:09:18,704 Found link https://files.pythonhosted.org/packages/31/96/1de7dacf24f68076f5fba1966b0d61d7f0245efd582dbbff52eda8943ca4/ICGC-data-parser-0.1.1.tar.gz (from https://pypi.org/simple/icgc-data-parser/), version: 0.1.1 2025-09-08T12:09:18,704 Skipping link: No binaries permitted for icgc-data-parser: https://files.pythonhosted.org/packages/0c/10/cb015ffdccd4da66f61279aff6e17109defd2e8fb6bf54bab1129fdd43e8/ICGC_data_parser-0.2.0-py3-none-any.whl (from https://pypi.org/simple/icgc-data-parser/) 2025-09-08T12:09:18,705 Skipping link: No binaries permitted for icgc-data-parser: https://files.pythonhosted.org/packages/ed/96/b90b0b8a28680faf9b16b837f1445c2437d06a5e53dd357f0434c30b628b/ICGC_data_parser-0.2.1-py3-none-any.whl (from https://pypi.org/simple/icgc-data-parser/) 2025-09-08T12:09:18,705 Skipping link: No binaries permitted for icgc-data-parser: https://files.pythonhosted.org/packages/94/97/8169f98b0f61e40809dc519893831d37772d313a598f137bee8328dce869/ICGC_data_parser-0.2.2-py3-none-any.whl (from https://pypi.org/simple/icgc-data-parser/) 2025-09-08T12:09:18,706 Fetching project page and analyzing links: https://www.piwheels.org/simple/icgc-data-parser/ 2025-09-08T12:09:18,706 Getting page https://www.piwheels.org/simple/icgc-data-parser/ 2025-09-08T12:09:18,708 Found index url https://www.piwheels.org/simple/ 2025-09-08T12:09:18,815 Fetched page https://www.piwheels.org/simple/icgc-data-parser/ as text/html 2025-09-08T12:09:18,816 Skipping link: not a file: https://www.piwheels.org/simple/icgc-data-parser/ 2025-09-08T12:09:18,816 Skipping link: not a file: https://pypi.org/simple/icgc-data-parser/ 2025-09-08T12:09:18,842 Given no hashes to check 1 links for project 'icgc-data-parser': discarding no candidates 2025-09-08T12:09:18,844 Collecting icgc-data-parser==0.1.0 2025-09-08T12:09:18,845 Created temporary directory: /tmp/pip-unpack-lkowszep 2025-09-08T12:09:18,983 Downloading ICGC-data-parser-0.1.0.tar.gz (259 kB) 2025-09-08T12:09:19,050 Added icgc-data-parser==0.1.0 from https://files.pythonhosted.org/packages/66/4e/ac497d6fafbbdb3afd8a34f5b14fa5baf887bab7b03b11d1b37415f1b908/ICGC-data-parser-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-27o8_p7p' 2025-09-08T12:09:19,051 Running setup.py (path:/tmp/pip-wheel-ovuc8t7z/icgc-data-parser_713d4cea68e04dcfa10272bcd5bb1819/setup.py) egg_info for package icgc-data-parser 2025-09-08T12:09:19,051 Created temporary directory: /tmp/pip-pip-egg-info-hfx5ra2u 2025-09-08T12:09:19,052 Preparing metadata (setup.py): started 2025-09-08T12:09:19,052 Running command python setup.py egg_info 2025-09-08T12:09:19,566 Traceback (most recent call last): 2025-09-08T12:09:19,568 File "", line 2, in 2025-09-08T12:09:19,568 exec(compile(''' 2025-09-08T12:09:19,568 ~~~~^^^^^^^^^^^^ 2025-09-08T12:09:19,568 # This is -- a caller that pip uses to run setup.py 2025-09-08T12:09:19,568 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,568 ...<32 lines>... 2025-09-08T12:09:19,568 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T12:09:19,568 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,569 ''' % ('/tmp/pip-wheel-ovuc8t7z/icgc-data-parser_713d4cea68e04dcfa10272bcd5bb1819/setup.py',), "", "exec")) 2025-09-08T12:09:19,569 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,569 File "", line 35, in 2025-09-08T12:09:19,569 File "/tmp/pip-wheel-ovuc8t7z/icgc-data-parser_713d4cea68e04dcfa10272bcd5bb1819/setup.py", line 17, in 2025-09-08T12:09:19,569 with open(path.join(here, 'src/Python/README.rst'), encoding='utf-8') as f: 2025-09-08T12:09:19,569 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,569 File "", line 921, in open 2025-09-08T12:09:19,569 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/pip-wheel-ovuc8t7z/icgc-data-parser_713d4cea68e04dcfa10272bcd5bb1819/src/Python/README.rst' 2025-09-08T12:09:19,653 ERROR: python setup.py egg_info exited with 1 2025-09-08T12:09:19,664 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T12:09:19,664 exec(compile('"'"''"'"''"'"' 2025-09-08T12:09:19,664 # This is -- a caller that pip uses to run setup.py 2025-09-08T12:09:19,664 # 2025-09-08T12:09:19,664 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T12:09:19,664 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T12:09:19,664 # - It provides a clear error message when setuptools is not installed. 2025-09-08T12:09:19,664 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T12:09:19,664 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T12:09:19,664 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T12:09:19,664 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T12:09:19,664 import os, sys, tokenize, traceback 2025-09-08T12:09:19,664 2025-09-08T12:09:19,664 try: 2025-09-08T12:09:19,664 import setuptools 2025-09-08T12:09:19,664 except ImportError: 2025-09-08T12:09:19,664 print( 2025-09-08T12:09:19,664 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T12:09:19,664 "the build environment with exception:", 2025-09-08T12:09:19,664 file=sys.stderr, 2025-09-08T12:09:19,664 ) 2025-09-08T12:09:19,664 traceback.print_exc() 2025-09-08T12:09:19,664 sys.exit(1) 2025-09-08T12:09:19,664 2025-09-08T12:09:19,664 __file__ = %r 2025-09-08T12:09:19,664 sys.argv[0] = __file__ 2025-09-08T12:09:19,664 2025-09-08T12:09:19,664 if os.path.exists(__file__): 2025-09-08T12:09:19,664 filename = __file__ 2025-09-08T12:09:19,664 with tokenize.open(__file__) as f: 2025-09-08T12:09:19,664 setup_py_code = f.read() 2025-09-08T12:09:19,664 else: 2025-09-08T12:09:19,664 filename = "" 2025-09-08T12:09:19,664 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T12:09:19,664 2025-09-08T12:09:19,664 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T12:09:19,664 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ovuc8t7z/icgc-data-parser_713d4cea68e04dcfa10272bcd5bb1819/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-hfx5ra2u[/] 2025-09-08T12:09:19,665 [bold magenta]cwd[/]: /tmp/pip-wheel-ovuc8t7z/icgc-data-parser_713d4cea68e04dcfa10272bcd5bb1819/ 2025-09-08T12:09:19,665 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T12:09:19,666 ERROR: metadata generation failed 2025-09-08T12:09:19,671 Exception information: 2025-09-08T12:09:19,671 Traceback (most recent call last): 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T12:09:19,671 call_subprocess( 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~~~^ 2025-09-08T12:09:19,671 args, 2025-09-08T12:09:19,671 ^^^^^ 2025-09-08T12:09:19,671 ...<2 lines>... 2025-09-08T12:09:19,671 spinner=spinner, 2025-09-08T12:09:19,671 ^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 ) 2025-09-08T12:09:19,671 ^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T12:09:19,671 raise error 2025-09-08T12:09:19,671 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T12:09:19,671 2025-09-08T12:09:19,671 The above exception was the direct cause of the following exception: 2025-09-08T12:09:19,671 2025-09-08T12:09:19,671 Traceback (most recent call last): 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T12:09:19,671 status = _inner_run() 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T12:09:19,671 return self.run(options, args) 2025-09-08T12:09:19,671 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T12:09:19,671 return func(self, options, args) 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T12:09:19,671 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T12:09:19,671 result = self._result = resolver.resolve( 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~~~~^ 2025-09-08T12:09:19,671 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T12:09:19,671 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 ) 2025-09-08T12:09:19,671 ^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T12:09:19,671 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T12:09:19,671 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T12:09:19,671 if not criterion.candidates: 2025-09-08T12:09:19,671 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T12:09:19,671 return bool(self._sequence) 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T12:09:19,671 self._bool = any(self) 2025-09-08T12:09:19,671 ~~~^^^^^^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T12:09:19,671 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T12:09:19,671 ^^^^^^^^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T12:09:19,671 candidate = func() 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T12:09:19,671 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T12:09:19,671 link, template, name, version 2025-09-08T12:09:19,671 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 ) 2025-09-08T12:09:19,671 ^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T12:09:19,671 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~^ 2025-09-08T12:09:19,671 link, 2025-09-08T12:09:19,671 ^^^^^ 2025-09-08T12:09:19,671 ...<3 lines>... 2025-09-08T12:09:19,671 version=version, 2025-09-08T12:09:19,671 ^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 ) 2025-09-08T12:09:19,671 ^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T12:09:19,671 super().__init__( 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~~~~^ 2025-09-08T12:09:19,671 link=link, 2025-09-08T12:09:19,671 ^^^^^^^^^^ 2025-09-08T12:09:19,671 ...<4 lines>... 2025-09-08T12:09:19,671 version=version, 2025-09-08T12:09:19,671 ^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 ) 2025-09-08T12:09:19,671 ^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T12:09:19,671 self.dist = self._prepare() 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~^^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T12:09:19,671 dist = self._prepare_distribution() 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T12:09:19,671 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T12:09:19,671 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T12:09:19,671 dist = _get_prepared_distribution( 2025-09-08T12:09:19,671 req, 2025-09-08T12:09:19,671 ...<3 lines>... 2025-09-08T12:09:19,671 self.check_build_deps, 2025-09-08T12:09:19,671 ) 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T12:09:19,671 abstract_dist.prepare_distribution_metadata( 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T12:09:19,671 finder, build_isolation, check_build_deps 2025-09-08T12:09:19,671 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 ) 2025-09-08T12:09:19,671 ^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T12:09:19,671 self.req.prepare_metadata() 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T12:09:19,671 self.metadata_directory = generate_metadata_legacy( 2025-09-08T12:09:19,671 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T12:09:19,671 build_env=self.build_env, 2025-09-08T12:09:19,671 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 ...<3 lines>... 2025-09-08T12:09:19,671 details=details, 2025-09-08T12:09:19,671 ^^^^^^^^^^^^^^^^ 2025-09-08T12:09:19,671 ) 2025-09-08T12:09:19,671 ^ 2025-09-08T12:09:19,671 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T12:09:19,671 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T12:09:19,671 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T12:09:19,691 Removed icgc-data-parser==0.1.0 from https://files.pythonhosted.org/packages/66/4e/ac497d6fafbbdb3afd8a34f5b14fa5baf887bab7b03b11d1b37415f1b908/ICGC-data-parser-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-27o8_p7p' 2025-09-08T12:09:19,691 Removed build tracker: '/tmp/pip-build-tracker-27o8_p7p'