2025-09-08T12:09:19,463 Created temporary directory: /tmp/pip-build-tracker-j5n7tgcc 2025-09-08T12:09:19,463 Initialized build tracking at /tmp/pip-build-tracker-j5n7tgcc 2025-09-08T12:09:19,464 Created build tracker: /tmp/pip-build-tracker-j5n7tgcc 2025-09-08T12:09:19,464 Entered build tracker: /tmp/pip-build-tracker-j5n7tgcc 2025-09-08T12:09:19,464 Created temporary directory: /tmp/pip-wheel-ecmznr6q 2025-09-08T12:09:19,467 Created temporary directory: /tmp/pip-ephem-wheel-cache-t82ze_dw 2025-09-08T12:09:19,528 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T12:09:19,530 2 location(s) to search for versions of icgc-data-parser: 2025-09-08T12:09:19,530 * https://pypi.org/simple/icgc-data-parser/ 2025-09-08T12:09:19,530 * https://www.piwheels.org/simple/icgc-data-parser/ 2025-09-08T12:09:19,531 Fetching project page and analyzing links: https://pypi.org/simple/icgc-data-parser/ 2025-09-08T12:09:19,531 Getting page https://pypi.org/simple/icgc-data-parser/ 2025-09-08T12:09:19,532 Found index url https://pypi.org/simple/ 2025-09-08T12:09:19,602 Fetched page https://pypi.org/simple/icgc-data-parser/ as application/vnd.pypi.simple.v1+json 2025-09-08T12:09:19,603 Found link https://files.pythonhosted.org/packages/66/4e/ac497d6fafbbdb3afd8a34f5b14fa5baf887bab7b03b11d1b37415f1b908/ICGC-data-parser-0.1.0.tar.gz (from https://pypi.org/simple/icgc-data-parser/), version: 0.1.0 2025-09-08T12:09:19,604 Found link https://files.pythonhosted.org/packages/31/96/1de7dacf24f68076f5fba1966b0d61d7f0245efd582dbbff52eda8943ca4/ICGC-data-parser-0.1.1.tar.gz (from https://pypi.org/simple/icgc-data-parser/), version: 0.1.1 2025-09-08T12:09:19,604 Skipping link: No binaries permitted for icgc-data-parser: https://files.pythonhosted.org/packages/0c/10/cb015ffdccd4da66f61279aff6e17109defd2e8fb6bf54bab1129fdd43e8/ICGC_data_parser-0.2.0-py3-none-any.whl (from https://pypi.org/simple/icgc-data-parser/) 2025-09-08T12:09:19,604 Skipping link: No binaries permitted for icgc-data-parser: https://files.pythonhosted.org/packages/ed/96/b90b0b8a28680faf9b16b837f1445c2437d06a5e53dd357f0434c30b628b/ICGC_data_parser-0.2.1-py3-none-any.whl (from https://pypi.org/simple/icgc-data-parser/) 2025-09-08T12:09:19,604 Skipping link: No binaries permitted for icgc-data-parser: https://files.pythonhosted.org/packages/94/97/8169f98b0f61e40809dc519893831d37772d313a598f137bee8328dce869/ICGC_data_parser-0.2.2-py3-none-any.whl (from https://pypi.org/simple/icgc-data-parser/) 2025-09-08T12:09:19,604 Fetching project page and analyzing links: https://www.piwheels.org/simple/icgc-data-parser/ 2025-09-08T12:09:19,605 Getting page https://www.piwheels.org/simple/icgc-data-parser/ 2025-09-08T12:09:19,606 Found index url https://www.piwheels.org/simple/ 2025-09-08T12:09:19,702 Fetched page https://www.piwheels.org/simple/icgc-data-parser/ as text/html 2025-09-08T12:09:19,703 Skipping link: not a file: https://www.piwheels.org/simple/icgc-data-parser/ 2025-09-08T12:09:19,703 Skipping link: not a file: https://pypi.org/simple/icgc-data-parser/ 2025-09-08T12:09:19,726 Given no hashes to check 1 links for project 'icgc-data-parser': discarding no candidates 2025-09-08T12:09:19,727 Collecting icgc-data-parser==0.1.1 2025-09-08T12:09:19,729 Created temporary directory: /tmp/pip-unpack-m4pi_fp2 2025-09-08T12:09:19,872 Downloading ICGC-data-parser-0.1.1.tar.gz (259 kB) 2025-09-08T12:09:19,933 Added icgc-data-parser==0.1.1 from https://files.pythonhosted.org/packages/31/96/1de7dacf24f68076f5fba1966b0d61d7f0245efd582dbbff52eda8943ca4/ICGC-data-parser-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-j5n7tgcc' 2025-09-08T12:09:19,934 Running setup.py (path:/tmp/pip-wheel-ecmznr6q/icgc-data-parser_4558389464be4bbe9f5f4052e69ae4b4/setup.py) egg_info for package icgc-data-parser 2025-09-08T12:09:19,934 Created temporary directory: /tmp/pip-pip-egg-info-6f21ba5l 2025-09-08T12:09:19,934 Preparing metadata (setup.py): started 2025-09-08T12:09:19,935 Running command python setup.py egg_info 2025-09-08T12:09:20,444 Traceback (most recent call last): 2025-09-08T12:09:20,446 File "", line 2, in 2025-09-08T12:09:20,446 exec(compile(''' 2025-09-08T12:09:20,446 ~~~~^^^^^^^^^^^^ 2025-09-08T12:09:20,446 # This is -- a caller that pip uses to run setup.py 2025-09-08T12:09:20,446 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,446 ...<32 lines>... 2025-09-08T12:09:20,447 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T12:09:20,447 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,447 ''' % ('/tmp/pip-wheel-ecmznr6q/icgc-data-parser_4558389464be4bbe9f5f4052e69ae4b4/setup.py',), "", "exec")) 2025-09-08T12:09:20,447 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,447 File "", line 35, in 2025-09-08T12:09:20,447 File "/tmp/pip-wheel-ecmznr6q/icgc-data-parser_4558389464be4bbe9f5f4052e69ae4b4/setup.py", line 17, in 2025-09-08T12:09:20,447 with open(path.join(here, 'src/Python/README.rst'), encoding='utf-8') as f: 2025-09-08T12:09:20,447 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,447 File "", line 921, in open 2025-09-08T12:09:20,448 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/pip-wheel-ecmznr6q/icgc-data-parser_4558389464be4bbe9f5f4052e69ae4b4/src/Python/README.rst' 2025-09-08T12:09:20,531 ERROR: python setup.py egg_info exited with 1 2025-09-08T12:09:20,543 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T12:09:20,543 exec(compile('"'"''"'"''"'"' 2025-09-08T12:09:20,543 # This is -- a caller that pip uses to run setup.py 2025-09-08T12:09:20,543 # 2025-09-08T12:09:20,543 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T12:09:20,543 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T12:09:20,543 # - It provides a clear error message when setuptools is not installed. 2025-09-08T12:09:20,543 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T12:09:20,543 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T12:09:20,543 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T12:09:20,543 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T12:09:20,543 import os, sys, tokenize, traceback 2025-09-08T12:09:20,543 2025-09-08T12:09:20,543 try: 2025-09-08T12:09:20,543 import setuptools 2025-09-08T12:09:20,543 except ImportError: 2025-09-08T12:09:20,543 print( 2025-09-08T12:09:20,543 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T12:09:20,543 "the build environment with exception:", 2025-09-08T12:09:20,543 file=sys.stderr, 2025-09-08T12:09:20,543 ) 2025-09-08T12:09:20,543 traceback.print_exc() 2025-09-08T12:09:20,543 sys.exit(1) 2025-09-08T12:09:20,543 2025-09-08T12:09:20,543 __file__ = %r 2025-09-08T12:09:20,543 sys.argv[0] = __file__ 2025-09-08T12:09:20,543 2025-09-08T12:09:20,543 if os.path.exists(__file__): 2025-09-08T12:09:20,543 filename = __file__ 2025-09-08T12:09:20,543 with tokenize.open(__file__) as f: 2025-09-08T12:09:20,543 setup_py_code = f.read() 2025-09-08T12:09:20,543 else: 2025-09-08T12:09:20,543 filename = "" 2025-09-08T12:09:20,543 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T12:09:20,543 2025-09-08T12:09:20,543 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T12:09:20,543 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ecmznr6q/icgc-data-parser_4558389464be4bbe9f5f4052e69ae4b4/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-6f21ba5l[/] 2025-09-08T12:09:20,543 [bold magenta]cwd[/]: /tmp/pip-wheel-ecmznr6q/icgc-data-parser_4558389464be4bbe9f5f4052e69ae4b4/ 2025-09-08T12:09:20,543 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T12:09:20,544 ERROR: metadata generation failed 2025-09-08T12:09:20,549 Exception information: 2025-09-08T12:09:20,549 Traceback (most recent call last): 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T12:09:20,549 call_subprocess( 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~~~^ 2025-09-08T12:09:20,549 args, 2025-09-08T12:09:20,549 ^^^^^ 2025-09-08T12:09:20,549 ...<2 lines>... 2025-09-08T12:09:20,549 spinner=spinner, 2025-09-08T12:09:20,549 ^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 ) 2025-09-08T12:09:20,549 ^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T12:09:20,549 raise error 2025-09-08T12:09:20,549 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T12:09:20,549 2025-09-08T12:09:20,549 The above exception was the direct cause of the following exception: 2025-09-08T12:09:20,549 2025-09-08T12:09:20,549 Traceback (most recent call last): 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T12:09:20,549 status = _inner_run() 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T12:09:20,549 return self.run(options, args) 2025-09-08T12:09:20,549 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T12:09:20,549 return func(self, options, args) 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T12:09:20,549 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T12:09:20,549 result = self._result = resolver.resolve( 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~~~~^ 2025-09-08T12:09:20,549 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T12:09:20,549 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 ) 2025-09-08T12:09:20,549 ^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T12:09:20,549 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T12:09:20,549 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T12:09:20,549 if not criterion.candidates: 2025-09-08T12:09:20,549 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T12:09:20,549 return bool(self._sequence) 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T12:09:20,549 self._bool = any(self) 2025-09-08T12:09:20,549 ~~~^^^^^^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T12:09:20,549 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T12:09:20,549 ^^^^^^^^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T12:09:20,549 candidate = func() 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T12:09:20,549 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T12:09:20,549 link, template, name, version 2025-09-08T12:09:20,549 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 ) 2025-09-08T12:09:20,549 ^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T12:09:20,549 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~^ 2025-09-08T12:09:20,549 link, 2025-09-08T12:09:20,549 ^^^^^ 2025-09-08T12:09:20,549 ...<3 lines>... 2025-09-08T12:09:20,549 version=version, 2025-09-08T12:09:20,549 ^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 ) 2025-09-08T12:09:20,549 ^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T12:09:20,549 super().__init__( 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~~~~^ 2025-09-08T12:09:20,549 link=link, 2025-09-08T12:09:20,549 ^^^^^^^^^^ 2025-09-08T12:09:20,549 ...<4 lines>... 2025-09-08T12:09:20,549 version=version, 2025-09-08T12:09:20,549 ^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 ) 2025-09-08T12:09:20,549 ^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T12:09:20,549 self.dist = self._prepare() 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~^^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T12:09:20,549 dist = self._prepare_distribution() 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T12:09:20,549 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T12:09:20,549 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T12:09:20,549 dist = _get_prepared_distribution( 2025-09-08T12:09:20,549 req, 2025-09-08T12:09:20,549 ...<3 lines>... 2025-09-08T12:09:20,549 self.check_build_deps, 2025-09-08T12:09:20,549 ) 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T12:09:20,549 abstract_dist.prepare_distribution_metadata( 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T12:09:20,549 finder, build_isolation, check_build_deps 2025-09-08T12:09:20,549 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 ) 2025-09-08T12:09:20,549 ^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T12:09:20,549 self.req.prepare_metadata() 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T12:09:20,549 self.metadata_directory = generate_metadata_legacy( 2025-09-08T12:09:20,549 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T12:09:20,549 build_env=self.build_env, 2025-09-08T12:09:20,549 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 ...<3 lines>... 2025-09-08T12:09:20,549 details=details, 2025-09-08T12:09:20,549 ^^^^^^^^^^^^^^^^ 2025-09-08T12:09:20,549 ) 2025-09-08T12:09:20,549 ^ 2025-09-08T12:09:20,549 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T12:09:20,549 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T12:09:20,549 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T12:09:20,570 Removed icgc-data-parser==0.1.1 from https://files.pythonhosted.org/packages/31/96/1de7dacf24f68076f5fba1966b0d61d7f0245efd582dbbff52eda8943ca4/ICGC-data-parser-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-j5n7tgcc' 2025-09-08T12:09:20,570 Removed build tracker: '/tmp/pip-build-tracker-j5n7tgcc'