2025-09-08T12:13:06,992 Created temporary directory: /tmp/pip-build-tracker-2h0_wo5h 2025-09-08T12:13:06,993 Initialized build tracking at /tmp/pip-build-tracker-2h0_wo5h 2025-09-08T12:13:06,993 Created build tracker: /tmp/pip-build-tracker-2h0_wo5h 2025-09-08T12:13:06,993 Entered build tracker: /tmp/pip-build-tracker-2h0_wo5h 2025-09-08T12:13:06,994 Created temporary directory: /tmp/pip-wheel-wfzzfkj8 2025-09-08T12:13:06,997 Created temporary directory: /tmp/pip-ephem-wheel-cache-4ctnmi2n 2025-09-08T12:13:07,060 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T12:13:07,062 2 location(s) to search for versions of gpseqc: 2025-09-08T12:13:07,062 * https://pypi.org/simple/gpseqc/ 2025-09-08T12:13:07,062 * https://www.piwheels.org/simple/gpseqc/ 2025-09-08T12:13:07,062 Fetching project page and analyzing links: https://pypi.org/simple/gpseqc/ 2025-09-08T12:13:07,063 Getting page https://pypi.org/simple/gpseqc/ 2025-09-08T12:13:07,064 Found index url https://pypi.org/simple/ 2025-09-08T12:13:07,209 Fetched page https://pypi.org/simple/gpseqc/ as application/vnd.pypi.simple.v1+json 2025-09-08T12:13:07,211 Found link https://files.pythonhosted.org/packages/0f/d3/8f43461acdb82059acf6f79f266710cb46129f7a61a1f73b436e2dccdac1/gpseqc-0.0.1.tar.gz (from https://pypi.org/simple/gpseqc/), version: 0.0.1 2025-09-08T12:13:07,212 Found link https://files.pythonhosted.org/packages/9a/36/eef6608a37d5bda68e115027ef2a244a3723357b1d80f30365f0636eb1b9/gpseqc-2.3.4.tar.gz (from https://pypi.org/simple/gpseqc/), version: 2.3.4 2025-09-08T12:13:07,212 Found link https://files.pythonhosted.org/packages/70/f9/b1686b07915cac8fef3aa20b4f9999c0353337c90d296d087ff489ee7a8f/gpseqc-2.3.5.tar.gz (from https://pypi.org/simple/gpseqc/), version: 2.3.5 2025-09-08T12:13:07,212 Found link https://files.pythonhosted.org/packages/e9/5b/18fa209745a8b41fd8cfbf0270038351501781539684e6488a2609291f4c/gpseqc-2.3.6.tar.gz (from https://pypi.org/simple/gpseqc/), version: 2.3.6 2025-09-08T12:13:07,213 Fetching project page and analyzing links: https://www.piwheels.org/simple/gpseqc/ 2025-09-08T12:13:07,214 Getting page https://www.piwheels.org/simple/gpseqc/ 2025-09-08T12:13:07,215 Found index url https://www.piwheels.org/simple/ 2025-09-08T12:13:07,315 Fetched page https://www.piwheels.org/simple/gpseqc/ as text/html 2025-09-08T12:13:07,316 Skipping link: No binaries permitted for gpseqc: https://archive1.piwheels.org/simple/gpseqc/gpseqc-2.3.6-py3-none-any.whl#sha256=1ac4da052024f6fea4c8a25fae0439ebf9b6bd542cb47be90a87c86612af3aff (from https://www.piwheels.org/simple/gpseqc/) 2025-09-08T12:13:07,317 Skipping link: No binaries permitted for gpseqc: https://archive1.piwheels.org/simple/gpseqc/gpseqc-2.3.5-py3-none-any.whl#sha256=2739bc4e9f31a2e851627408ed6c8c74a5e82f59a3bd6df8cc91f1a35a4f1245 (from https://www.piwheels.org/simple/gpseqc/) 2025-09-08T12:13:07,317 Skipping link: No binaries permitted for gpseqc: https://archive1.piwheels.org/simple/gpseqc/gpseqc-2.3.4-py3-none-any.whl#sha256=8698f604f5a4395b8cf9e82e8f4dea90d00ee122bca7e6341ad4e3da52c63237 (from https://www.piwheels.org/simple/gpseqc/) 2025-09-08T12:13:07,317 Skipping link: not a file: https://www.piwheels.org/simple/gpseqc/ 2025-09-08T12:13:07,317 Skipping link: not a file: https://pypi.org/simple/gpseqc/ 2025-09-08T12:13:07,341 Given no hashes to check 1 links for project 'gpseqc': discarding no candidates 2025-09-08T12:13:07,343 Collecting gpseqc==0.0.1 2025-09-08T12:13:07,345 Created temporary directory: /tmp/pip-unpack-at4pm4un 2025-09-08T12:13:07,544 Downloading gpseqc-0.0.1.tar.gz (1.6 kB) 2025-09-08T12:13:07,565 Added gpseqc==0.0.1 from https://files.pythonhosted.org/packages/0f/d3/8f43461acdb82059acf6f79f266710cb46129f7a61a1f73b436e2dccdac1/gpseqc-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-2h0_wo5h' 2025-09-08T12:13:07,567 Running setup.py (path:/tmp/pip-wheel-wfzzfkj8/gpseqc_91b590798e84431796a112c15ec448f9/setup.py) egg_info for package gpseqc 2025-09-08T12:13:07,568 Created temporary directory: /tmp/pip-pip-egg-info-dql1d1ed 2025-09-08T12:13:07,568 Preparing metadata (setup.py): started 2025-09-08T12:13:07,569 Running command python setup.py egg_info 2025-09-08T12:13:08,275 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T12:13:08,276 warnings.warn(msg) 2025-09-08T12:13:08,276 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T12:13:08,276 warnings.warn(msg) 2025-09-08T12:13:08,678 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T12:13:08,678 !! 2025-09-08T12:13:08,679 ******************************************************************************** 2025-09-08T12:13:08,679 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T12:13:08,679 License :: OSI Approved :: MIT License 2025-09-08T12:13:08,679 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T12:13:08,679 ******************************************************************************** 2025-09-08T12:13:08,679 !! 2025-09-08T12:13:08,679 self._finalize_license_expression() 2025-09-08T12:13:08,759 running egg_info 2025-09-08T12:13:08,835 creating /tmp/pip-pip-egg-info-dql1d1ed/gpseqc.egg-info 2025-09-08T12:13:08,835 writing /tmp/pip-pip-egg-info-dql1d1ed/gpseqc.egg-info/PKG-INFO 2025-09-08T12:13:08,836 writing dependency_links to /tmp/pip-pip-egg-info-dql1d1ed/gpseqc.egg-info/dependency_links.txt 2025-09-08T12:13:08,837 writing requirements to /tmp/pip-pip-egg-info-dql1d1ed/gpseqc.egg-info/requires.txt 2025-09-08T12:13:08,837 writing top-level names to /tmp/pip-pip-egg-info-dql1d1ed/gpseqc.egg-info/top_level.txt 2025-09-08T12:13:08,838 writing manifest file '/tmp/pip-pip-egg-info-dql1d1ed/gpseqc.egg-info/SOURCES.txt' 2025-09-08T12:13:09,060 reading manifest file '/tmp/pip-pip-egg-info-dql1d1ed/gpseqc.egg-info/SOURCES.txt' 2025-09-08T12:13:09,063 writing manifest file '/tmp/pip-pip-egg-info-dql1d1ed/gpseqc.egg-info/SOURCES.txt' 2025-09-08T12:13:09,176 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T12:13:09,180 Source in /tmp/pip-wheel-wfzzfkj8/gpseqc_91b590798e84431796a112c15ec448f9 has version 0.0.1, which satisfies requirement gpseqc==0.0.1 from https://files.pythonhosted.org/packages/0f/d3/8f43461acdb82059acf6f79f266710cb46129f7a61a1f73b436e2dccdac1/gpseqc-0.0.1.tar.gz 2025-09-08T12:13:09,180 Removed gpseqc==0.0.1 from https://files.pythonhosted.org/packages/0f/d3/8f43461acdb82059acf6f79f266710cb46129f7a61a1f73b436e2dccdac1/gpseqc-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-2h0_wo5h' 2025-09-08T12:13:09,185 Created temporary directory: /tmp/pip-unpack-5tud_euk 2025-09-08T12:13:09,185 Created temporary directory: /tmp/pip-unpack-hcwmzngu 2025-09-08T12:13:09,185 Building wheels for collected packages: gpseqc 2025-09-08T12:13:09,187 Created temporary directory: /tmp/pip-wheel-kfyzs0pc 2025-09-08T12:13:09,187 DEPRECATION: Building 'gpseqc' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'gpseqc'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T12:13:09,188 Building wheel for gpseqc (setup.py): started 2025-09-08T12:13:09,189 Destination directory: /tmp/pip-wheel-kfyzs0pc 2025-09-08T12:13:09,189 Running command python setup.py bdist_wheel 2025-09-08T12:13:09,867 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T12:13:09,868 warnings.warn(msg) 2025-09-08T12:13:09,868 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T12:13:09,868 warnings.warn(msg) 2025-09-08T12:13:10,253 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T12:13:10,253 !! 2025-09-08T12:13:10,253 ******************************************************************************** 2025-09-08T12:13:10,254 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T12:13:10,254 License :: OSI Approved :: MIT License 2025-09-08T12:13:10,254 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T12:13:10,254 ******************************************************************************** 2025-09-08T12:13:10,254 !! 2025-09-08T12:13:10,254 self._finalize_license_expression() 2025-09-08T12:13:10,255 running bdist_wheel 2025-09-08T12:13:10,619 running build 2025-09-08T12:13:10,620 running build_scripts 2025-09-08T12:13:10,620 creating build/scripts-3.13 2025-09-08T12:13:10,621 error: [Errno 2] No such file or directory: 'bin/gpseqc_estimate' 2025-09-08T12:13:10,736 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T12:13:10,749 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T12:13:10,749 exec(compile('"'"''"'"''"'"' 2025-09-08T12:13:10,749 # This is -- a caller that pip uses to run setup.py 2025-09-08T12:13:10,749 # 2025-09-08T12:13:10,749 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T12:13:10,749 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T12:13:10,749 # - It provides a clear error message when setuptools is not installed. 2025-09-08T12:13:10,749 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T12:13:10,749 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T12:13:10,749 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T12:13:10,749 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T12:13:10,749 import os, sys, tokenize, traceback 2025-09-08T12:13:10,749 2025-09-08T12:13:10,749 try: 2025-09-08T12:13:10,749 import setuptools 2025-09-08T12:13:10,749 except ImportError: 2025-09-08T12:13:10,749 print( 2025-09-08T12:13:10,749 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T12:13:10,749 "the build environment with exception:", 2025-09-08T12:13:10,749 file=sys.stderr, 2025-09-08T12:13:10,749 ) 2025-09-08T12:13:10,749 traceback.print_exc() 2025-09-08T12:13:10,749 sys.exit(1) 2025-09-08T12:13:10,749 2025-09-08T12:13:10,749 __file__ = %r 2025-09-08T12:13:10,749 sys.argv[0] = __file__ 2025-09-08T12:13:10,749 2025-09-08T12:13:10,749 if os.path.exists(__file__): 2025-09-08T12:13:10,749 filename = __file__ 2025-09-08T12:13:10,749 with tokenize.open(__file__) as f: 2025-09-08T12:13:10,749 setup_py_code = f.read() 2025-09-08T12:13:10,749 else: 2025-09-08T12:13:10,749 filename = "" 2025-09-08T12:13:10,749 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T12:13:10,749 2025-09-08T12:13:10,749 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T12:13:10,749 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-wfzzfkj8/gpseqc_91b590798e84431796a112c15ec448f9/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-kfyzs0pc[/] 2025-09-08T12:13:10,749 [bold magenta]cwd[/]: /tmp/pip-wheel-wfzzfkj8/gpseqc_91b590798e84431796a112c15ec448f9/ 2025-09-08T12:13:10,749 Building wheel for gpseqc (setup.py): finished with status 'error' 2025-09-08T12:13:10,750 ERROR: Failed building wheel for gpseqc 2025-09-08T12:13:10,751 Running setup.py clean for gpseqc 2025-09-08T12:13:10,752 Running command python setup.py clean 2025-09-08T12:13:11,454 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T12:13:11,454 warnings.warn(msg) 2025-09-08T12:13:11,455 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T12:13:11,455 warnings.warn(msg) 2025-09-08T12:13:11,848 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T12:13:11,848 !! 2025-09-08T12:13:11,848 ******************************************************************************** 2025-09-08T12:13:11,848 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T12:13:11,849 License :: OSI Approved :: MIT License 2025-09-08T12:13:11,849 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T12:13:11,849 ******************************************************************************** 2025-09-08T12:13:11,849 !! 2025-09-08T12:13:11,849 self._finalize_license_expression() 2025-09-08T12:13:11,925 running clean 2025-09-08T12:13:12,095 'build/lib' does not exist -- can't clean it 2025-09-08T12:13:12,096 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T12:13:12,096 removing 'build/scripts-3.13' (and everything under it) 2025-09-08T12:13:12,096 removing 'build' 2025-09-08T12:13:12,207 Failed to build gpseqc 2025-09-08T12:13:12,208 ERROR: Failed to build one or more wheels 2025-09-08T12:13:12,209 Exception information: 2025-09-08T12:13:12,209 Traceback (most recent call last): 2025-09-08T12:13:12,209 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T12:13:12,209 status = _inner_run() 2025-09-08T12:13:12,209 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T12:13:12,209 return self.run(options, args) 2025-09-08T12:13:12,209 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T12:13:12,209 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T12:13:12,209 return func(self, options, args) 2025-09-08T12:13:12,209 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T12:13:12,209 raise CommandError("Failed to build one or more wheels") 2025-09-08T12:13:12,209 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T12:13:12,213 Removed build tracker: '/tmp/pip-build-tracker-2h0_wo5h'