2025-09-08T12:19:55,679 Created temporary directory: /tmp/pip-build-tracker-7ikaosbi 2025-09-08T12:19:55,680 Initialized build tracking at /tmp/pip-build-tracker-7ikaosbi 2025-09-08T12:19:55,680 Created build tracker: /tmp/pip-build-tracker-7ikaosbi 2025-09-08T12:19:55,680 Entered build tracker: /tmp/pip-build-tracker-7ikaosbi 2025-09-08T12:19:55,680 Created temporary directory: /tmp/pip-wheel-dckl5q_2 2025-09-08T12:19:55,684 Created temporary directory: /tmp/pip-ephem-wheel-cache-8llqajid 2025-09-08T12:19:55,740 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T12:19:55,742 2 location(s) to search for versions of mikado: 2025-09-08T12:19:55,742 * https://pypi.org/simple/mikado/ 2025-09-08T12:19:55,742 * https://www.piwheels.org/simple/mikado/ 2025-09-08T12:19:55,743 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2025-09-08T12:19:55,743 Getting page https://pypi.org/simple/mikado/ 2025-09-08T12:19:55,744 Found index url https://pypi.org/simple/ 2025-09-08T12:19:55,813 Fetched page https://pypi.org/simple/mikado/ as application/vnd.pypi.simple.v1+json 2025-09-08T12:19:55,817 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2025-09-08T12:19:55,817 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2025-09-08T12:19:55,817 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2025-09-08T12:19:55,818 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0 2025-09-08T12:19:55,818 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.1 2025-09-08T12:19:55,818 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2 2025-09-08T12:19:55,818 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.1 2025-09-08T12:19:55,819 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.2 2025-09-08T12:19:55,819 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/mikado/) 2025-09-08T12:19:55,819 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.4 2025-09-08T12:19:55,819 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc1 2025-09-08T12:19:55,819 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc2 2025-09-08T12:19:55,820 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2025-09-08T12:19:55,820 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2025-09-08T12:19:55,820 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2025-09-08T12:19:55,821 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2025-09-08T12:19:55,821 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2025-09-08T12:19:55,821 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2025-09-08T12:19:55,821 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2025-09-08T12:19:55,821 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2025-09-08T12:19:55,822 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2025-09-08T12:19:55,822 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2025-09-08T12:19:55,822 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2025-09-08T12:19:55,823 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2025-09-08T12:19:55,823 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2025-09-08T12:19:55,823 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2025-09-08T12:19:55,823 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2025-09-08T12:19:55,823 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2025-09-08T12:19:55,824 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2025-09-08T12:19:55,824 Getting page https://www.piwheels.org/simple/mikado/ 2025-09-08T12:19:55,825 Found index url https://www.piwheels.org/simple/ 2025-09-08T12:19:55,926 Fetched page https://www.piwheels.org/simple/mikado/ as text/html 2025-09-08T12:19:55,956 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,957 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,957 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,957 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,957 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,957 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,958 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,958 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,958 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,958 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,958 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,958 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,959 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,959 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,959 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,959 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,959 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,959 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,959 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,960 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,960 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,960 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,960 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,960 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,960 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv6l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,960 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv7l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,961 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv6l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,961 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv7l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2025-09-08T12:19:55,961 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.3-cp37-cp37m-linux_armv6l.whl#sha256=0ca20e373c9e6bb78e52fcc63bd76ce297019dc0398a342552de37e05393ec0d (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,961 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.3-cp37-cp37m-linux_armv7l.whl#sha256=0ca20e373c9e6bb78e52fcc63bd76ce297019dc0398a342552de37e05393ec0d (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,961 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.3-cp39-cp39-linux_armv6l.whl#sha256=6ab7b92ed4d7a2e550425206bf76466c2a06204965e72e2a037d0619c1176c17 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,961 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.3-cp39-cp39-linux_armv7l.whl#sha256=6ab7b92ed4d7a2e550425206bf76466c2a06204965e72e2a037d0619c1176c17 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,961 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.2-cp37-cp37m-linux_armv6l.whl#sha256=54e4cff71242ce161025563618f5de554b9850f22a3ce8a78e500862c0b2a540 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,962 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.2-cp37-cp37m-linux_armv7l.whl#sha256=54e4cff71242ce161025563618f5de554b9850f22a3ce8a78e500862c0b2a540 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,962 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.2-cp39-cp39-linux_armv6l.whl#sha256=18d61b880f9e7c86198a1c220aae05e9fbd56142e74ddc764e4d81dbacbd4262 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,962 Skipping link: No binaries permitted for mikado: 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https://archive1.piwheels.org/simple/mikado/Mikado-2.2.1-cp39-cp39-linux_armv6l.whl#sha256=9e52828b40718524193ce4980512a419424cc7d9c9b9cb878e1cfde9c1632be4 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,962 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.1-cp39-cp39-linux_armv7l.whl#sha256=9e52828b40718524193ce4980512a419424cc7d9c9b9cb878e1cfde9c1632be4 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,963 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp37-cp37m-linux_armv6l.whl#sha256=b280f5816066e0f347dc78973f3dba49da227f44894dd596e0d1d8b968232fe7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,963 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp37-cp37m-linux_armv7l.whl#sha256=b280f5816066e0f347dc78973f3dba49da227f44894dd596e0d1d8b968232fe7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,963 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp39-cp39-linux_armv6l.whl#sha256=a037ee8af5e543296153555c58e9d0ccd04adf06ebcd075b18ce38e5d6b8d676 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,963 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.2.0-cp39-cp39-linux_armv7l.whl#sha256=a037ee8af5e543296153555c58e9d0ccd04adf06ebcd075b18ce38e5d6b8d676 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,963 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.1-cp37-cp37m-linux_armv6l.whl#sha256=e093885a6c7fe5089e2e326c23cdbfc9ab107892b45fc5c52c93f79679a4ae36 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,963 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.1-cp37-cp37m-linux_armv7l.whl#sha256=e093885a6c7fe5089e2e326c23cdbfc9ab107892b45fc5c52c93f79679a4ae36 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,963 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.1-cp39-cp39-linux_armv6l.whl#sha256=61e184cd3ae19e270db7a5e664830fc57ce3b8a2ce8029fe4f3e155e69861958 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,964 Skipping link: No binaries permitted for mikado: 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https://archive1.piwheels.org/simple/mikado/Mikado-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=352b6d95b4ec9833a56b875166ebc51e217328dd6ee9d2740c8931ec1a1f5264 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,964 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=352b6d95b4ec9833a56b875166ebc51e217328dd6ee9d2740c8931ec1a1f5264 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,964 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp37-cp37m-linux_armv6l.whl#sha256=2f415150126f13a761de3741431aeeeedc7de2714bf481b1082993ad77d07529 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,964 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp37-cp37m-linux_armv7l.whl#sha256=2f415150126f13a761de3741431aeeeedc7de2714bf481b1082993ad77d07529 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,965 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=d470f2f06b5088be5229fff70d2f2453c550acccfed8693854613b383c3c2ceb (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,965 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=d470f2f06b5088be5229fff70d2f2453c550acccfed8693854613b383c3c2ceb (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,965 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=aa58f4246ed233041f1947ffec596fd5ddb6bd53113d31be9b6e2c82d87a3554 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,965 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=aa58f4246ed233041f1947ffec596fd5ddb6bd53113d31be9b6e2c82d87a3554 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,965 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=650d6cccd0d2d54620080fd88477dcf0ecefa34f7f65887febc654a9daee6938 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2025-09-08T12:19:55,965 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,967 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc2-cp39-cp39-linux_armv7l.whl#sha256=27d920e52482eb28c4c4915cd13022c57b6a2e9b24ab9cbb9c6fb84a57c86006 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,967 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp35-cp35m-linux_armv6l.whl#sha256=f0c146400dbcde6c6b2b4691d3519ee99863e2f9a5a53473bb658567431c4e58 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,967 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-2.0rc1-cp35-cp35m-linux_armv7l.whl#sha256=f0c146400dbcde6c6b2b4691d3519ee99863e2f9a5a53473bb658567431c4e58 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,967 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,968 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,968 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,968 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv7l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,968 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,968 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv7l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,968 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv6l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,969 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp311-cp311-linux_armv6l.whl#sha256=f046bdaea4a2cf6889ea15964c360551b58427311379d68e8d438b673e4f4d97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,969 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.4-cp311-cp311-linux_armv7l.whl#sha256=f046bdaea4a2cf6889ea15964c360551b58427311379d68e8d438b673e4f4d97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,969 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,969 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv7l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,969 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,969 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,969 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp311-cp311-linux_armv6l.whl#sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,970 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.2-cp311-cp311-linux_armv7l.whl#sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,970 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,970 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,970 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,970 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,971 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,971 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,971 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv6l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,971 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv7l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,971 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv7l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,971 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,971 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv6l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,972 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv7l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,972 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,972 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv7l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,972 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv6l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,972 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv7l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,972 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp39-cp39-linux_armv6l.whl#sha256=dfcb87da8afbf3806c9ba6ac00eb3fcc32717eecd66839e3981624e0c83102b9 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,972 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.2-cp39-cp39-linux_armv7l.whl#sha256=dfcb87da8afbf3806c9ba6ac00eb3fcc32717eecd66839e3981624e0c83102b9 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,973 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv6l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,973 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv7l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,973 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv6l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,973 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv7l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,973 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv6l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,973 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv7l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,974 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.1-cp313-cp313-linux_armv6l.whl#sha256=cc5aaceaf7fdd95eaabce55d720dfd1f5d3fbcd4d6c286fe1159d54cd58aee5b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,974 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.1-cp313-cp313-linux_armv7l.whl#sha256=cc5aaceaf7fdd95eaabce55d720dfd1f5d3fbcd4d6c286fe1159d54cd58aee5b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,974 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv7l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,974 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv6l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,974 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv6l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,974 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv7l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,974 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0-cp313-cp313-linux_armv6l.whl#sha256=7b05ef72b23835adf1757bbd0efb0cd8d5f5e3f9b505e72a913aef68936edead (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,975 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0-cp313-cp313-linux_armv7l.whl#sha256=7b05ef72b23835adf1757bbd0efb0cd8d5f5e3f9b505e72a913aef68936edead (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,975 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,975 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,975 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv6l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,975 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,975 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b10-cp313-cp313-linux_armv6l.whl#sha256=ffea753ff371f991add460bcf1ac33f764f959d104fbcee732e221437348aa03 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,976 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b10-cp313-cp313-linux_armv7l.whl#sha256=ffea753ff371f991add460bcf1ac33f764f959d104fbcee732e221437348aa03 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,976 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,976 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,976 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv6l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,976 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv7l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,976 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b9-cp313-cp313-linux_armv6l.whl#sha256=feed0441e01e5ed6abdde5aa63f32d8938e0f4396312cde18b80a225e942fe6a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,977 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b9-cp313-cp313-linux_armv7l.whl#sha256=feed0441e01e5ed6abdde5aa63f32d8938e0f4396312cde18b80a225e942fe6a (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,977 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,977 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,977 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,977 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,977 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv6l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,978 Skipping link: No binaries permitted for mikado: https://archive1.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv7l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,978 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b5.post1-cp313-cp313-linux_armv6l.whl#sha256=a484381081c56e7106e45ed0d641845f6c7386588a9564360e66d4259c2a30c2 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,978 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/mikado-1.0.0b5.post1-cp313-cp313-linux_armv7l.whl#sha256=a484381081c56e7106e45ed0d641845f6c7386588a9564360e66d4259c2a30c2 (from https://www.piwheels.org/simple/mikado/) 2025-09-08T12:19:55,978 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2025-09-08T12:19:55,979 Skipping link: not a file: https://pypi.org/simple/mikado/ 2025-09-08T12:19:56,003 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2025-09-08T12:19:56,004 Collecting mikado==1.2 2025-09-08T12:19:56,005 Created temporary directory: /tmp/pip-unpack-egjhgo4b 2025-09-08T12:19:56,151 Downloading Mikado-1.2.tar.gz (17.0 MB) 2025-09-08T12:19:59,302 Added mikado==1.2 from https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz to build tracker '/tmp/pip-build-tracker-7ikaosbi' 2025-09-08T12:19:59,303 Running setup.py (path:/tmp/pip-wheel-dckl5q_2/mikado_f014cd0a0d124677a8221f8ede68f6b1/setup.py) egg_info for package mikado 2025-09-08T12:19:59,303 Created temporary directory: /tmp/pip-pip-egg-info-akxmt5tn 2025-09-08T12:19:59,303 Preparing metadata (setup.py): started 2025-09-08T12:19:59,304 Running command python setup.py egg_info 2025-09-08T12:20:02,546 Compiling Mikado/utilities/overlap.pyx because it changed. 2025-09-08T12:20:02,546 Compiling Mikado/scales/f1.pyx because it changed. 2025-09-08T12:20:02,546 Compiling Mikado/scales/contrast.pyx because it changed. 2025-09-08T12:20:02,546 Compiling Mikado/utilities/intervaltree.pyx because it changed. 2025-09-08T12:20:02,546 [1/4] Cythonizing Mikado/scales/contrast.pyx 2025-09-08T12:20:02,546 [2/4] Cythonizing Mikado/scales/f1.pyx 2025-09-08T12:20:02,546 [3/4] Cythonizing Mikado/utilities/intervaltree.pyx 2025-09-08T12:20:02,546 [4/4] Cythonizing Mikado/utilities/overlap.pyx 2025-09-08T12:20:02,718 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T12:20:02,718 warnings.warn(msg) 2025-09-08T12:20:02,938 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T12:20:02,938 !! 2025-09-08T12:20:02,938 ******************************************************************************** 2025-09-08T12:20:02,938 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T12:20:02,939 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-09-08T12:20:02,939 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T12:20:02,939 ******************************************************************************** 2025-09-08T12:20:02,939 !! 2025-09-08T12:20:02,939 self._finalize_license_expression() 2025-09-08T12:20:03,011 running egg_info 2025-09-08T12:20:03,084 creating /tmp/pip-pip-egg-info-akxmt5tn/Mikado.egg-info 2025-09-08T12:20:03,084 writing /tmp/pip-pip-egg-info-akxmt5tn/Mikado.egg-info/PKG-INFO 2025-09-08T12:20:03,087 writing dependency_links to /tmp/pip-pip-egg-info-akxmt5tn/Mikado.egg-info/dependency_links.txt 2025-09-08T12:20:03,088 writing entry points to /tmp/pip-pip-egg-info-akxmt5tn/Mikado.egg-info/entry_points.txt 2025-09-08T12:20:03,091 writing requirements to /tmp/pip-pip-egg-info-akxmt5tn/Mikado.egg-info/requires.txt 2025-09-08T12:20:03,091 writing top-level names to /tmp/pip-pip-egg-info-akxmt5tn/Mikado.egg-info/top_level.txt 2025-09-08T12:20:03,091 writing manifest file '/tmp/pip-pip-egg-info-akxmt5tn/Mikado.egg-info/SOURCES.txt' 2025-09-08T12:20:03,465 reading manifest file '/tmp/pip-pip-egg-info-akxmt5tn/Mikado.egg-info/SOURCES.txt' 2025-09-08T12:20:03,465 reading manifest template 'MANIFEST.in' 2025-09-08T12:20:03,556 warning: no previously-included files matching '*' found under directory 'docs' 2025-09-08T12:20:03,556 adding license file 'AUTHORS' 2025-09-08T12:20:03,572 writing manifest file '/tmp/pip-pip-egg-info-akxmt5tn/Mikado.egg-info/SOURCES.txt' 2025-09-08T12:20:03,886 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T12:20:03,891 Source in /tmp/pip-wheel-dckl5q_2/mikado_f014cd0a0d124677a8221f8ede68f6b1 has version 1.2, which satisfies requirement mikado==1.2 from https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz 2025-09-08T12:20:03,891 Removed mikado==1.2 from https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz from build tracker '/tmp/pip-build-tracker-7ikaosbi' 2025-09-08T12:20:03,901 Created temporary directory: /tmp/pip-unpack-ab56v7q2 2025-09-08T12:20:03,902 Created temporary directory: /tmp/pip-unpack-t18dtqyy 2025-09-08T12:20:03,902 Building wheels for collected packages: mikado 2025-09-08T12:20:03,903 Created temporary directory: /tmp/pip-wheel-5fpbyn1_ 2025-09-08T12:20:03,903 DEPRECATION: Building 'mikado' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'mikado'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T12:20:03,904 Building wheel for mikado (setup.py): started 2025-09-08T12:20:03,905 Destination directory: /tmp/pip-wheel-5fpbyn1_ 2025-09-08T12:20:03,905 Running command python setup.py bdist_wheel 2025-09-08T12:20:05,159 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T12:20:05,159 warnings.warn(msg) 2025-09-08T12:20:05,382 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T12:20:05,382 !! 2025-09-08T12:20:05,382 ******************************************************************************** 2025-09-08T12:20:05,382 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T12:20:05,382 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-09-08T12:20:05,383 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T12:20:05,383 ******************************************************************************** 2025-09-08T12:20:05,383 !! 2025-09-08T12:20:05,383 self._finalize_license_expression() 2025-09-08T12:20:05,383 running bdist_wheel 2025-09-08T12:20:05,744 running build 2025-09-08T12:20:05,744 running build_py 2025-09-08T12:20:05,819 creating build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T12:20:05,820 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T12:20:05,820 copying Mikado/version.py -> build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T12:20:05,821 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-313/Mikado 2025-09-08T12:20:05,822 creating build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T12:20:05,822 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T12:20:05,823 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T12:20:05,824 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T12:20:05,824 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts 2025-09-08T12:20:05,825 creating build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T12:20:05,825 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T12:20:05,826 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T12:20:05,826 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T12:20:05,827 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T12:20:05,827 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T12:20:05,828 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T12:20:05,829 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-313/Mikado/parsers 2025-09-08T12:20:05,829 creating build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T12:20:05,830 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T12:20:05,830 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T12:20:05,831 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T12:20:05,832 creating build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T12:20:05,832 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T12:20:05,832 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T12:20:05,833 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T12:20:05,834 creating build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,834 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,835 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,835 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,836 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,837 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,837 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,838 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,838 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,839 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,839 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,840 copying Mikado/tests/test_bed12.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,841 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,841 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,842 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,842 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,843 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,843 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,844 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,845 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,845 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,846 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,846 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,847 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,847 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,848 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:05,849 creating build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T12:20:05,849 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T12:20:05,850 creating build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T12:20:05,850 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T12:20:05,851 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T12:20:05,852 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T12:20:05,852 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T12:20:05,853 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T12:20:05,853 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T12:20:05,854 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T12:20:05,855 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T12:20:05,855 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-313/Mikado/loci 2025-09-08T12:20:05,856 creating build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T12:20:05,856 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T12:20:05,857 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T12:20:05,857 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-313/Mikado/picking 2025-09-08T12:20:05,858 creating build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T12:20:05,859 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T12:20:05,859 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T12:20:05,860 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T12:20:05,860 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-313/Mikado/preparation 2025-09-08T12:20:05,861 creating build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T12:20:05,861 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T12:20:05,862 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T12:20:05,863 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T12:20:05,863 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T12:20:05,864 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T12:20:05,864 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T12:20:05,865 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms 2025-09-08T12:20:05,865 creating build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:05,866 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:05,866 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:05,867 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:05,868 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:05,868 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:05,869 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:05,870 creating build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T12:20:05,870 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T12:20:05,870 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T12:20:05,871 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T12:20:05,871 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers 2025-09-08T12:20:05,872 creating build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T12:20:05,872 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T12:20:05,873 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T12:20:05,874 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T12:20:05,874 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T12:20:05,875 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods 2025-09-08T12:20:05,876 creating build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T12:20:05,876 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T12:20:05,877 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T12:20:05,877 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T12:20:05,878 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T12:20:05,878 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T12:20:05,879 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T12:20:05,879 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T12:20:05,880 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T12:20:05,880 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util 2025-09-08T12:20:05,881 creating build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T12:20:05,881 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T12:20:05,882 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T12:20:05,883 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T12:20:05,883 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T12:20:05,884 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T12:20:05,884 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T12:20:05,885 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer 2025-09-08T12:20:05,885 running egg_info 2025-09-08T12:20:05,958 writing Mikado.egg-info/PKG-INFO 2025-09-08T12:20:05,962 writing dependency_links to Mikado.egg-info/dependency_links.txt 2025-09-08T12:20:05,962 writing entry points to Mikado.egg-info/entry_points.txt 2025-09-08T12:20:05,965 writing requirements to Mikado.egg-info/requires.txt 2025-09-08T12:20:05,965 writing top-level names to Mikado.egg-info/top_level.txt 2025-09-08T12:20:06,049 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2025-09-08T12:20:06,076 reading manifest template 'MANIFEST.in' 2025-09-08T12:20:06,178 adding license file 'AUTHORS' 2025-09-08T12:20:06,203 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2025-09-08T12:20:06,214 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.configuration.scoring_files' is absent from the `packages` configuration. 2025-09-08T12:20:06,214 !! 2025-09-08T12:20:06,214 ******************************************************************************** 2025-09-08T12:20:06,214 ############################ 2025-09-08T12:20:06,215 # Package would be ignored # 2025-09-08T12:20:06,215 ############################ 2025-09-08T12:20:06,215 Python recognizes 'Mikado.configuration.scoring_files' as an importable package[^1], 2025-09-08T12:20:06,215 but it is absent from setuptools' `packages` configuration. 2025-09-08T12:20:06,215 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T12:20:06,215 package, please make sure that 'Mikado.configuration.scoring_files' is explicitly added 2025-09-08T12:20:06,215 to the `packages` configuration field. 2025-09-08T12:20:06,215 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T12:20:06,215 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T12:20:06,215 instead of `find_packages(...)`/`find:`). 2025-09-08T12:20:06,216 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T12:20:06,216 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T12:20:06,216 If you don't want 'Mikado.configuration.scoring_files' to be distributed and are 2025-09-08T12:20:06,216 already explicitly excluding 'Mikado.configuration.scoring_files' via 2025-09-08T12:20:06,216 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T12:20:06,216 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T12:20:06,216 combination with a more fine grained `package-data` configuration. 2025-09-08T12:20:06,217 You can read more about "package data files" on setuptools documentation page: 2025-09-08T12:20:06,217 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T12:20:06,217 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T12:20:06,217 even if it does not contain any `.py` files. 2025-09-08T12:20:06,217 On the other hand, currently there is no concept of package data 2025-09-08T12:20:06,217 directory, all directories are treated like packages. 2025-09-08T12:20:06,217 ******************************************************************************** 2025-09-08T12:20:06,217 !! 2025-09-08T12:20:06,218 check.warn(importable) 2025-09-08T12:20:06,218 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.tests.__pycache__' is absent from the `packages` configuration. 2025-09-08T12:20:06,218 !! 2025-09-08T12:20:06,218 ******************************************************************************** 2025-09-08T12:20:06,218 ############################ 2025-09-08T12:20:06,218 # Package would be ignored # 2025-09-08T12:20:06,218 ############################ 2025-09-08T12:20:06,218 Python recognizes 'Mikado.tests.__pycache__' as an importable package[^1], 2025-09-08T12:20:06,218 but it is absent from setuptools' `packages` configuration. 2025-09-08T12:20:06,219 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T12:20:06,219 package, please make sure that 'Mikado.tests.__pycache__' is explicitly added 2025-09-08T12:20:06,219 to the `packages` configuration field. 2025-09-08T12:20:06,219 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T12:20:06,219 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T12:20:06,219 instead of `find_packages(...)`/`find:`). 2025-09-08T12:20:06,219 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T12:20:06,219 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T12:20:06,220 If you don't want 'Mikado.tests.__pycache__' to be distributed and are 2025-09-08T12:20:06,220 already explicitly excluding 'Mikado.tests.__pycache__' via 2025-09-08T12:20:06,220 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T12:20:06,220 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T12:20:06,220 combination with a more fine grained `package-data` configuration. 2025-09-08T12:20:06,220 You can read more about "package data files" on setuptools documentation page: 2025-09-08T12:20:06,220 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T12:20:06,221 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T12:20:06,221 even if it does not contain any `.py` files. 2025-09-08T12:20:06,221 On the other hand, currently there is no concept of package data 2025-09-08T12:20:06,221 directory, all directories are treated like packages. 2025-09-08T12:20:06,221 ******************************************************************************** 2025-09-08T12:20:06,221 !! 2025-09-08T12:20:06,221 check.warn(importable) 2025-09-08T12:20:06,221 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'Mikado.tests.fusion_test' is absent from the `packages` configuration. 2025-09-08T12:20:06,221 !! 2025-09-08T12:20:06,222 ******************************************************************************** 2025-09-08T12:20:06,222 ############################ 2025-09-08T12:20:06,222 # Package would be ignored # 2025-09-08T12:20:06,222 ############################ 2025-09-08T12:20:06,222 Python recognizes 'Mikado.tests.fusion_test' as an importable package[^1], 2025-09-08T12:20:06,222 but it is absent from setuptools' `packages` configuration. 2025-09-08T12:20:06,222 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T12:20:06,222 package, please make sure that 'Mikado.tests.fusion_test' is explicitly added 2025-09-08T12:20:06,222 to the `packages` configuration field. 2025-09-08T12:20:06,222 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T12:20:06,223 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T12:20:06,223 instead of `find_packages(...)`/`find:`). 2025-09-08T12:20:06,223 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T12:20:06,223 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T12:20:06,223 If you don't want 'Mikado.tests.fusion_test' to be distributed and are 2025-09-08T12:20:06,223 already explicitly excluding 'Mikado.tests.fusion_test' via 2025-09-08T12:20:06,223 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T12:20:06,223 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T12:20:06,224 combination with a more fine grained `package-data` configuration. 2025-09-08T12:20:06,224 You can read more about "package data files" on setuptools documentation page: 2025-09-08T12:20:06,224 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T12:20:06,224 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T12:20:06,224 even if it does not contain any `.py` files. 2025-09-08T12:20:06,224 On the other hand, currently there is no concept of package data 2025-09-08T12:20:06,224 directory, all directories are treated like packages. 2025-09-08T12:20:06,224 ******************************************************************************** 2025-09-08T12:20:06,225 !! 2025-09-08T12:20:06,225 check.warn(importable) 2025-09-08T12:20:06,231 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T12:20:06,232 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T12:20:06,233 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T12:20:06,233 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-cpython-313/Mikado/configuration 2025-09-08T12:20:06,234 creating build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T12:20:06,234 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T12:20:06,234 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T12:20:06,235 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T12:20:06,235 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T12:20:06,236 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T12:20:06,237 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T12:20:06,237 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T12:20:06,238 copying Mikado/configuration/scoring_files/scerevisiae.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T12:20:06,238 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files 2025-09-08T12:20:06,239 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T12:20:06,243 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T12:20:06,243 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T12:20:06,245 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T12:20:06,246 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T12:20:06,246 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,276 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,277 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,277 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,278 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,278 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,280 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,284 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,291 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,292 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,293 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,293 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,294 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,294 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,295 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,295 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,296 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,296 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-313/Mikado/tests 2025-09-08T12:20:06,320 creating build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,321 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,321 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,322 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,322 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,323 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,324 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,324 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,325 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,325 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,326 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,327 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,327 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,328 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,329 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,329 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,330 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,331 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,331 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,332 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,332 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,333 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,333 copying Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,334 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,334 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,335 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,335 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,336 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,336 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,337 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,337 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,338 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,338 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,339 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,339 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,340 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,341 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,341 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,342 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,342 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,343 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,343 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,344 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,344 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,345 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,345 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,346 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,346 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,347 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,347 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,348 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,348 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,349 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,350 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,350 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,351 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,351 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,352 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,352 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,353 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,354 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,354 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,355 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,355 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,356 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,356 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,357 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,358 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,358 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,359 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,360 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,361 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,361 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,362 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,363 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,363 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,364 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__ 2025-09-08T12:20:06,364 creating build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T12:20:06,364 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T12:20:06,365 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T12:20:06,366 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test 2025-09-08T12:20:06,366 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T12:20:06,367 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T12:20:06,367 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T12:20:06,368 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T12:20:06,368 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-cpython-313/Mikado/daijin 2025-09-08T12:20:06,369 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:06,372 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:06,372 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:06,373 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:06,374 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:06,375 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:06,380 running build_ext 2025-09-08T12:20:06,387 building 'Mikado.utilities.overlap' extension 2025-09-08T12:20:06,388 creating build/temp.linux-armv7l-cpython-313/Mikado/utilities 2025-09-08T12:20:06,389 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-cpython-313/Mikado/utilities/overlap.o 2025-09-08T12:20:10,395 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/utilities/overlap.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so 2025-09-08T12:20:10,516 building 'Mikado.scales.f1' extension 2025-09-08T12:20:10,517 creating build/temp.linux-armv7l-cpython-313/Mikado/scales 2025-09-08T12:20:10,517 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-cpython-313/Mikado/scales/f1.o 2025-09-08T12:20:13,816 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/scales/f1.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so 2025-09-08T12:20:13,926 building 'Mikado.scales.contrast' extension 2025-09-08T12:20:13,926 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-cpython-313/Mikado/scales/contrast.o 2025-09-08T12:20:26,424 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/scales/contrast.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so 2025-09-08T12:20:26,546 building 'Mikado.utilities.intervaltree' extension 2025-09-08T12:20:26,546 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.o 2025-09-08T12:20:46,397 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so 2025-09-08T12:20:46,539 running build_scripts 2025-09-08T12:20:46,539 creating build/scripts-3.13 2025-09-08T12:20:46,539 copying and adjusting util/trim_long_introns.py -> build/scripts-3.13 2025-09-08T12:20:46,540 copying and adjusting util/asm_collect.py -> build/scripts-3.13 2025-09-08T12:20:46,541 copying and adjusting util/bam2gtf.py -> build/scripts-3.13 2025-09-08T12:20:46,541 copying and adjusting util/self_training.py -> build/scripts-3.13 2025-09-08T12:20:46,542 copying and adjusting util/convert_cdna_match_gff3.py -> build/scripts-3.13 2025-09-08T12:20:46,542 copying and adjusting util/calculate_distances.py -> build/scripts-3.13 2025-09-08T12:20:46,543 copying util/tease_maker_apart.py -> build/scripts-3.13 2025-09-08T12:20:46,544 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.13 2025-09-08T12:20:46,544 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.13 2025-09-08T12:20:46,545 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.13 2025-09-08T12:20:46,545 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.13 2025-09-08T12:20:46,546 copying and adjusting util/remove_utrs.py -> build/scripts-3.13 2025-09-08T12:20:46,546 copying and adjusting util/align_collect.py -> build/scripts-3.13 2025-09-08T12:20:46,546 copying and adjusting util/extract_promoter_regions.py -> build/scripts-3.13 2025-09-08T12:20:46,547 copying and adjusting util/grep.py -> build/scripts-3.13 2025-09-08T12:20:46,548 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.13 2025-09-08T12:20:46,548 copying and adjusting util/class_run.py -> build/scripts-3.13 2025-09-08T12:20:46,548 copying and adjusting util/split_fasta.py -> build/scripts-3.13 2025-09-08T12:20:46,549 copying and adjusting util/remove_from_embl.py -> build/scripts-3.13 2025-09-08T12:20:46,549 copying and adjusting util/analyse_metrics.py -> build/scripts-3.13 2025-09-08T12:20:46,550 copying and adjusting util/create_model.py -> build/scripts-3.13 2025-09-08T12:20:46,550 changing mode of build/scripts-3.13/trim_long_introns.py from 644 to 755 2025-09-08T12:20:46,551 changing mode of build/scripts-3.13/asm_collect.py from 644 to 755 2025-09-08T12:20:46,551 changing mode of build/scripts-3.13/bam2gtf.py from 644 to 755 2025-09-08T12:20:46,551 changing mode of build/scripts-3.13/self_training.py from 644 to 755 2025-09-08T12:20:46,551 changing mode of build/scripts-3.13/convert_cdna_match_gff3.py from 644 to 755 2025-09-08T12:20:46,551 changing mode of build/scripts-3.13/calculate_distances.py from 644 to 755 2025-09-08T12:20:46,551 changing mode of build/scripts-3.13/tease_maker_apart.py from 644 to 755 2025-09-08T12:20:46,551 changing mode of build/scripts-3.13/merge_junction_bed12.py from 644 to 755 2025-09-08T12:20:46,551 changing mode of build/scripts-3.13/getFastaFromIds.py from 644 to 755 2025-09-08T12:20:46,551 changing mode of build/scripts-3.13/gffjunc_to_bed12.py from 644 to 755 2025-09-08T12:20:46,552 changing mode of build/scripts-3.13/sanitize_blast_db.py from 644 to 755 2025-09-08T12:20:46,552 changing mode of build/scripts-3.13/remove_utrs.py from 644 to 755 2025-09-08T12:20:46,552 changing mode of build/scripts-3.13/align_collect.py from 644 to 755 2025-09-08T12:20:46,552 changing mode of build/scripts-3.13/extract_promoter_regions.py from 644 to 755 2025-09-08T12:20:46,552 changing mode of build/scripts-3.13/grep.py from 644 to 755 2025-09-08T12:20:46,552 changing mode of build/scripts-3.13/add_transcript_feature_to_gtf.py from 644 to 755 2025-09-08T12:20:46,552 changing mode of build/scripts-3.13/class_run.py from 644 to 755 2025-09-08T12:20:46,552 changing mode of build/scripts-3.13/split_fasta.py from 644 to 755 2025-09-08T12:20:46,552 changing mode of build/scripts-3.13/remove_from_embl.py from 644 to 755 2025-09-08T12:20:46,552 changing mode of build/scripts-3.13/analyse_metrics.py from 644 to 755 2025-09-08T12:20:46,553 changing mode of build/scripts-3.13/create_model.py from 644 to 755 2025-09-08T12:20:46,698 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-08T12:20:46,698 !! 2025-09-08T12:20:46,698 ******************************************************************************** 2025-09-08T12:20:46,698 Please avoid running ``setup.py`` directly. 2025-09-08T12:20:46,698 Instead, use pypa/build, pypa/installer or other 2025-09-08T12:20:46,698 standards-based tools. 2025-09-08T12:20:46,699 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T12:20:46,699 or your builds will no longer be supported. 2025-09-08T12:20:46,699 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-08T12:20:46,699 ******************************************************************************** 2025-09-08T12:20:46,699 !! 2025-09-08T12:20:46,699 self.initialize_options() 2025-09-08T12:20:46,775 installing to build/bdist.linux-armv7l/wheel 2025-09-08T12:20:46,775 running install 2025-09-08T12:20:46,798 running install_lib 2025-09-08T12:20:46,872 creating build/bdist.linux-armv7l/wheel 2025-09-08T12:20:46,872 creating build/bdist.linux-armv7l/wheel/Mikado 2025-09-08T12:20:46,873 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2025-09-08T12:20:46,873 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2025-09-08T12:20:46,873 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T12:20:46,874 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T12:20:46,874 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T12:20:46,874 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T12:20:46,875 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T12:20:46,875 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T12:20:46,876 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers/blast_serializer 2025-09-08T12:20:46,876 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T12:20:46,876 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T12:20:46,877 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T12:20:46,877 copying build/lib.linux-armv7l-cpython-313/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/./Mikado/serializers 2025-09-08T12:20:46,878 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2025-09-08T12:20:46,878 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,881 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,882 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,882 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,883 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/f1.c -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,884 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,885 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,885 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/contrast.c -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,888 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,888 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,889 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/assigner.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,889 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,890 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/class_codes.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,890 copying build/lib.linux-armv7l-cpython-313/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/scales 2025-09-08T12:20:46,891 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2025-09-08T12:20:46,891 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2025-09-08T12:20:46,891 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T12:20:46,892 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/merge_blast.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T12:20:46,892 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T12:20:46,893 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T12:20:46,893 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/class_codes.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T12:20:46,893 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T12:20:46,894 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T12:20:46,894 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T12:20:46,895 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms/util 2025-09-08T12:20:46,895 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T12:20:46,895 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T12:20:46,896 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T12:20:46,896 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T12:20:46,897 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T12:20:46,897 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T12:20:46,897 copying build/lib.linux-armv7l-cpython-313/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/./Mikado/subprograms 2025-09-08T12:20:46,898 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2025-09-08T12:20:46,898 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T12:20:46,899 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T12:20:46,899 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T12:20:46,899 copying build/lib.linux-armv7l-cpython-313/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/./Mikado/preparation 2025-09-08T12:20:46,900 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2025-09-08T12:20:46,900 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T12:20:46,901 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T12:20:46,902 copying build/lib.linux-armv7l-cpython-313/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/picking 2025-09-08T12:20:46,902 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2025-09-08T12:20:46,902 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T12:20:46,903 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/reference_gene.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T12:20:46,903 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T12:20:46,904 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T12:20:46,904 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T12:20:46,905 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T12:20:46,905 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T12:20:46,906 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T12:20:46,906 copying build/lib.linux-armv7l-cpython-313/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/./Mikado/loci 2025-09-08T12:20:46,907 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2025-09-08T12:20:46,907 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/tr.snakefile -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T12:20:46,908 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/mikado.snakefile -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T12:20:46,908 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T12:20:46,908 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/hpc.json -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T12:20:46,909 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/example_config.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T12:20:46,909 copying build/lib.linux-armv7l-cpython-313/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/daijin 2025-09-08T12:20:46,910 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2025-09-08T12:20:46,910 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2025-09-08T12:20:46,911 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T12:20:46,911 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T12:20:46,911 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/fusion_test/fusion_test.log -> build/bdist.linux-armv7l/wheel/./Mikado/tests/fusion_test 2025-09-08T12:20:46,912 creating build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2025-09-08T12:20:46,912 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,913 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,913 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,913 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,914 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,914 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,915 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,915 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,916 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,917 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,917 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,918 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,918 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,918 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,919 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,919 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,920 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,920 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,921 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,921 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,922 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,922 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,922 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,923 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,923 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,924 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,924 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,924 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,925 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,925 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,925 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,926 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,926 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,926 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,927 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,927 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,928 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,928 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,928 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,929 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,929 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,929 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,930 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,930 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,931 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,931 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,931 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,932 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,932 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,933 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,933 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,933 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,934 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,934 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,934 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,935 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,935 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,935 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,936 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,936 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,937 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,937 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,937 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,938 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,938 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,939 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,940 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,940 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,941 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,941 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,941 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,942 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,942 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,943 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,943 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,944 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/./Mikado/tests/__pycache__ 2025-09-08T12:20:46,944 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,968 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,969 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,969 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,970 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,971 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,971 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/scoring_only_cds.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,971 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/plants.yaml~ -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,972 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,972 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,973 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,979 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,984 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,985 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,986 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,986 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,986 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:46,987 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,016 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/utilities_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,016 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,017 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,017 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,017 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,018 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_single.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,018 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_positive.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,019 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/assigner_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,019 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/transcript_tester_negative.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,020 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_json.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,020 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/intervaltree_tests.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,021 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,021 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,021 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,022 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_bed12.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,022 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,023 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,023 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,023 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,024 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,024 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_serialisation.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,025 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/locus_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,025 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/orf_tester.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,026 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/parser_testing.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,026 copying build/lib.linux-armv7l-cpython-313/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/./Mikado/tests 2025-09-08T12:20:47,027 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2025-09-08T12:20:47,027 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T12:20:47,031 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T12:20:47,033 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T12:20:47,033 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T12:20:47,033 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T12:20:47,035 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T12:20:47,036 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/intervaltree.c -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T12:20:47,040 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T12:20:47,040 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T12:20:47,041 copying build/lib.linux-armv7l-cpython-313/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/utilities 2025-09-08T12:20:47,041 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2025-09-08T12:20:47,042 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2025-09-08T12:20:47,042 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/worm.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T12:20:47,042 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/scerevisiae.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T12:20:47,043 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/plants.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T12:20:47,043 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/insects.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T12:20:47,043 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/human.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T12:20:47,044 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T12:20:47,044 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T12:20:47,044 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T12:20:47,045 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/bdist.linux-armv7l/wheel/./Mikado/configuration/scoring_files 2025-09-08T12:20:47,045 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/scoring_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T12:20:47,045 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/requirements_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T12:20:47,046 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/daijin_schema.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T12:20:47,046 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/configuration_blueprint.json -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T12:20:47,047 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T12:20:47,047 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T12:20:47,047 copying build/lib.linux-armv7l-cpython-313/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/./Mikado/configuration 2025-09-08T12:20:47,048 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2025-09-08T12:20:47,048 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T12:20:47,049 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T12:20:47,049 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T12:20:47,050 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T12:20:47,050 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/blast_xml.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T12:20:47,051 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T12:20:47,051 copying build/lib.linux-armv7l-cpython-313/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/./Mikado/parsers 2025-09-08T12:20:47,052 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts 2025-09-08T12:20:47,052 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2025-09-08T12:20:47,052 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T12:20:47,053 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T12:20:47,053 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T12:20:47,054 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T12:20:47,054 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts/transcript_methods 2025-09-08T12:20:47,055 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/clique_methods.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T12:20:47,055 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T12:20:47,055 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T12:20:47,056 copying build/lib.linux-armv7l-cpython-313/Mikado/transcripts/transcript.py -> build/bdist.linux-armv7l/wheel/./Mikado/transcripts 2025-09-08T12:20:47,057 copying build/lib.linux-armv7l-cpython-313/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/./Mikado 2025-09-08T12:20:47,057 copying build/lib.linux-armv7l-cpython-313/Mikado/version.py -> build/bdist.linux-armv7l/wheel/./Mikado 2025-09-08T12:20:47,057 copying build/lib.linux-armv7l-cpython-313/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/./Mikado 2025-09-08T12:20:47,058 running install_egg_info 2025-09-08T12:20:47,135 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/./Mikado-1.2-py3.13.egg-info 2025-09-08T12:20:47,138 running install_scripts 2025-09-08T12:20:47,138 creating build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,138 copying build/scripts-3.13/create_model.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,139 copying build/scripts-3.13/analyse_metrics.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,139 copying build/scripts-3.13/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,140 copying build/scripts-3.13/split_fasta.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,140 copying build/scripts-3.13/class_run.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,141 copying build/scripts-3.13/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,141 copying build/scripts-3.13/grep.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,141 copying build/scripts-3.13/extract_promoter_regions.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,142 copying build/scripts-3.13/align_collect.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,142 copying build/scripts-3.13/remove_utrs.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,143 copying build/scripts-3.13/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,143 copying build/scripts-3.13/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,143 copying build/scripts-3.13/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,144 copying build/scripts-3.13/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,144 copying build/scripts-3.13/tease_maker_apart.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,144 copying build/scripts-3.13/calculate_distances.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,145 copying build/scripts-3.13/convert_cdna_match_gff3.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,145 copying build/scripts-3.13/self_training.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,146 copying build/scripts-3.13/bam2gtf.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,146 copying build/scripts-3.13/asm_collect.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,146 copying build/scripts-3.13/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts 2025-09-08T12:20:47,147 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/create_model.py to 755 2025-09-08T12:20:47,147 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/analyse_metrics.py to 755 2025-09-08T12:20:47,147 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/remove_from_embl.py to 755 2025-09-08T12:20:47,147 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/split_fasta.py to 755 2025-09-08T12:20:47,147 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/class_run.py to 755 2025-09-08T12:20:47,147 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/add_transcript_feature_to_gtf.py to 755 2025-09-08T12:20:47,147 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/grep.py to 755 2025-09-08T12:20:47,147 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/extract_promoter_regions.py to 755 2025-09-08T12:20:47,147 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/align_collect.py to 755 2025-09-08T12:20:47,148 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/remove_utrs.py to 755 2025-09-08T12:20:47,148 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/sanitize_blast_db.py to 755 2025-09-08T12:20:47,148 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/gffjunc_to_bed12.py to 755 2025-09-08T12:20:47,148 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/getFastaFromIds.py to 755 2025-09-08T12:20:47,148 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/merge_junction_bed12.py to 755 2025-09-08T12:20:47,148 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/tease_maker_apart.py to 755 2025-09-08T12:20:47,148 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/calculate_distances.py to 755 2025-09-08T12:20:47,148 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/convert_cdna_match_gff3.py to 755 2025-09-08T12:20:47,148 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/self_training.py to 755 2025-09-08T12:20:47,148 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/bam2gtf.py to 755 2025-09-08T12:20:47,149 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/asm_collect.py to 755 2025-09-08T12:20:47,149 changing mode of build/bdist.linux-armv7l/wheel/mikado-1.2.data/scripts/trim_long_introns.py to 755 2025-09-08T12:20:47,199 creating build/bdist.linux-armv7l/wheel/mikado-1.2.dist-info/WHEEL 2025-09-08T12:20:47,200 creating '/tmp/pip-wheel-5fpbyn1_/mikado-1.2-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-08T12:20:47,202 adding 'Mikado/__init__.py' 2025-09-08T12:20:47,203 adding 'Mikado/exceptions.py' 2025-09-08T12:20:47,203 adding 'Mikado/version.py' 2025-09-08T12:20:47,204 adding 'Mikado/configuration/__init__.py' 2025-09-08T12:20:47,207 adding 'Mikado/configuration/configuration_blueprint.json' 2025-09-08T12:20:47,210 adding 'Mikado/configuration/configurator.py' 2025-09-08T12:20:47,212 adding 'Mikado/configuration/daijin_configurator.py' 2025-09-08T12:20:47,213 adding 'Mikado/configuration/daijin_schema.json' 2025-09-08T12:20:47,213 adding 'Mikado/configuration/requirements_blueprint.json' 2025-09-08T12:20:47,214 adding 'Mikado/configuration/scoring_blueprint.json' 2025-09-08T12:20:47,215 adding 'Mikado/configuration/scoring_files/athaliana_scoring.yaml' 2025-09-08T12:20:47,216 adding 'Mikado/configuration/scoring_files/celegans_scoring.yaml' 2025-09-08T12:20:47,216 adding 'Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml' 2025-09-08T12:20:47,217 adding 'Mikado/configuration/scoring_files/hsapiens_scoring.yaml' 2025-09-08T12:20:47,218 adding 'Mikado/configuration/scoring_files/human.yaml' 2025-09-08T12:20:47,218 adding 'Mikado/configuration/scoring_files/insects.yaml' 2025-09-08T12:20:47,219 adding 'Mikado/configuration/scoring_files/plants.yaml' 2025-09-08T12:20:47,220 adding 'Mikado/configuration/scoring_files/scerevisiae.yaml' 2025-09-08T12:20:47,220 adding 'Mikado/configuration/scoring_files/worm.yaml' 2025-09-08T12:20:47,223 adding 'Mikado/daijin/__init__.py' 2025-09-08T12:20:47,224 adding 'Mikado/daijin/example_config.yaml' 2025-09-08T12:20:47,224 adding 'Mikado/daijin/hpc.json' 2025-09-08T12:20:47,225 adding 'Mikado/daijin/hpc.yaml' 2025-09-08T12:20:47,226 adding 'Mikado/daijin/mikado.snakefile' 2025-09-08T12:20:47,230 adding 'Mikado/daijin/tr.snakefile' 2025-09-08T12:20:47,231 adding 'Mikado/loci/__init__.py' 2025-09-08T12:20:47,237 adding 'Mikado/loci/abstractlocus.py' 2025-09-08T12:20:47,238 adding 'Mikado/loci/excluded.py' 2025-09-08T12:20:47,241 adding 'Mikado/loci/locus.py' 2025-09-08T12:20:47,242 adding 'Mikado/loci/monosublocus.py' 2025-09-08T12:20:47,244 adding 'Mikado/loci/monosublocusholder.py' 2025-09-08T12:20:47,246 adding 'Mikado/loci/reference_gene.py' 2025-09-08T12:20:47,247 adding 'Mikado/loci/sublocus.py' 2025-09-08T12:20:47,253 adding 'Mikado/loci/superlocus.py' 2025-09-08T12:20:47,255 adding 'Mikado/parsers/GFF.py' 2025-09-08T12:20:47,256 adding 'Mikado/parsers/GTF.py' 2025-09-08T12:20:47,257 adding 'Mikado/parsers/__init__.py' 2025-09-08T12:20:47,260 adding 'Mikado/parsers/bed12.py' 2025-09-08T12:20:47,262 adding 'Mikado/parsers/blast_utils.py' 2025-09-08T12:20:47,266 adding 'Mikado/parsers/blast_xml.py' 2025-09-08T12:20:47,267 adding 'Mikado/parsers/gfannotation.py' 2025-09-08T12:20:47,268 adding 'Mikado/picking/__init__.py' 2025-09-08T12:20:47,272 adding 'Mikado/picking/loci_processer.py' 2025-09-08T12:20:47,276 adding 'Mikado/picking/picker.py' 2025-09-08T12:20:47,277 adding 'Mikado/preparation/__init__.py' 2025-09-08T12:20:47,279 adding 'Mikado/preparation/annotation_parser.py' 2025-09-08T12:20:47,280 adding 'Mikado/preparation/checking.py' 2025-09-08T12:20:47,282 adding 'Mikado/preparation/prepare.py' 2025-09-08T12:20:47,283 adding 'Mikado/scales/__init__.py' 2025-09-08T12:20:47,286 adding 'Mikado/scales/accountant.py' 2025-09-08T12:20:47,290 adding 'Mikado/scales/assigner.py' 2025-09-08T12:20:47,292 adding 'Mikado/scales/class_codes.py' 2025-09-08T12:20:47,294 adding 'Mikado/scales/compare.py' 2025-09-08T12:20:47,343 adding 'Mikado/scales/contrast.c' 2025-09-08T12:20:47,463 adding 'Mikado/scales/contrast.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T12:20:47,467 adding 'Mikado/scales/contrast.pxd' 2025-09-08T12:20:47,469 adding 'Mikado/scales/contrast.pyx' 2025-09-08T12:20:47,500 adding 'Mikado/scales/f1.c' 2025-09-08T12:20:47,540 adding 'Mikado/scales/f1.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T12:20:47,543 adding 'Mikado/scales/f1.pxd' 2025-09-08T12:20:47,543 adding 'Mikado/scales/f1.pyx' 2025-09-08T12:20:47,544 adding 'Mikado/scales/resultstorer.py' 2025-09-08T12:20:47,545 adding 'Mikado/serializers/__init__.py' 2025-09-08T12:20:47,546 adding 'Mikado/serializers/external.py' 2025-09-08T12:20:47,547 adding 'Mikado/serializers/junction.py' 2025-09-08T12:20:47,548 adding 'Mikado/serializers/orf.py' 2025-09-08T12:20:47,549 adding 'Mikado/serializers/blast_serializer/__init__.py' 2025-09-08T12:20:47,550 adding 'Mikado/serializers/blast_serializer/hit.py' 2025-09-08T12:20:47,552 adding 'Mikado/serializers/blast_serializer/hsp.py' 2025-09-08T12:20:47,552 adding 'Mikado/serializers/blast_serializer/query.py' 2025-09-08T12:20:47,553 adding 'Mikado/serializers/blast_serializer/target.py' 2025-09-08T12:20:47,554 adding 'Mikado/serializers/blast_serializer/utils.py' 2025-09-08T12:20:47,557 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2025-09-08T12:20:47,558 adding 'Mikado/subprograms/__init__.py' 2025-09-08T12:20:47,559 adding 'Mikado/subprograms/__main__.py' 2025-09-08T12:20:47,560 adding 'Mikado/subprograms/compare.py' 2025-09-08T12:20:47,561 adding 'Mikado/subprograms/configure.py' 2025-09-08T12:20:47,563 adding 'Mikado/subprograms/pick.py' 2025-09-08T12:20:47,564 adding 'Mikado/subprograms/prepare.py' 2025-09-08T12:20:47,566 adding 'Mikado/subprograms/serialise.py' 2025-09-08T12:20:47,567 adding 'Mikado/subprograms/util/__init__.py' 2025-09-08T12:20:47,568 adding 'Mikado/subprograms/util/awk_gtf.py' 2025-09-08T12:20:47,568 adding 'Mikado/subprograms/util/class_codes.py' 2025-09-08T12:20:47,569 adding 'Mikado/subprograms/util/convert.py' 2025-09-08T12:20:47,570 adding 'Mikado/subprograms/util/grep.py' 2025-09-08T12:20:47,571 adding 'Mikado/subprograms/util/merge_blast.py' 2025-09-08T12:20:47,572 adding 'Mikado/subprograms/util/metrics.py' 2025-09-08T12:20:47,574 adding 'Mikado/subprograms/util/stats.py' 2025-09-08T12:20:47,576 adding 'Mikado/subprograms/util/trim.py' 2025-09-08T12:20:47,577 adding 'Mikado/tests/__init__.py' 2025-09-08T12:20:47,579 adding 'Mikado/tests/assigner_tester.py' 2025-09-08T12:20:48,443 adding 'Mikado/tests/chr5.fas.gz' 2025-09-08T12:20:48,494 adding 'Mikado/tests/configuration.yaml' 2025-09-08T12:20:48,496 adding 'Mikado/tests/cufflinks.gtf' 2025-09-08T12:20:48,496 adding 'Mikado/tests/genome.fai' 2025-09-08T12:20:48,497 adding 'Mikado/tests/intervaltree_tests.py' 2025-09-08T12:20:48,502 adding 'Mikado/tests/junctions.bed' 2025-09-08T12:20:48,507 adding 'Mikado/tests/locus_tester.py' 2025-09-08T12:20:48,532 adding 'Mikado/tests/mikado.blast.asn.gz' 2025-09-08T12:20:48,585 adding 'Mikado/tests/mikado.blast.xml' 2025-09-08T12:20:48,853 adding 'Mikado/tests/mikado.db' 2025-09-08T12:20:48,868 adding 'Mikado/tests/mikado_prepared.gtf' 2025-09-08T12:20:48,873 adding 'Mikado/tests/orf_tester.py' 2025-09-08T12:20:48,874 adding 'Mikado/tests/parser_testing.py' 2025-09-08T12:20:48,875 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2025-09-08T12:20:48,875 adding 'Mikado/tests/plants.yaml~' 2025-09-08T12:20:48,876 adding 'Mikado/tests/scoring_only_cds.yaml' 2025-09-08T12:20:48,877 adding 'Mikado/tests/test_bed12.py' 2025-09-08T12:20:48,878 adding 'Mikado/tests/test_blast_related.py' 2025-09-08T12:20:48,879 adding 'Mikado/tests/test_clique_methods.py' 2025-09-08T12:20:48,879 adding 'Mikado/tests/test_db_utils.py' 2025-09-08T12:20:48,880 adding 'Mikado/tests/test_external_scores.py' 2025-09-08T12:20:48,881 adding 'Mikado/tests/test_gene.py' 2025-09-08T12:20:48,882 adding 'Mikado/tests/test_invalid_orfs.py' 2025-09-08T12:20:48,882 adding 'Mikado/tests/test_json.py' 2025-09-08T12:20:48,883 adding 'Mikado/tests/test_metrics.py' 2025-09-08T12:20:48,884 adding 'Mikado/tests/test_modifications.py' 2025-09-08T12:20:48,885 adding 'Mikado/tests/test_serialisation.py' 2025-09-08T12:20:48,886 adding 'Mikado/tests/test_splitting.py' 2025-09-08T12:20:48,889 adding 'Mikado/tests/test_system_calls.py' 2025-09-08T12:20:48,890 adding 'Mikado/tests/test_transcript_checker.py' 2025-09-08T12:20:48,892 adding 'Mikado/tests/test_transcript_methods.py' 2025-09-08T12:20:48,894 adding 'Mikado/tests/transcript_tester_negative.py' 2025-09-08T12:20:48,897 adding 'Mikado/tests/transcript_tester_positive.py' 2025-09-08T12:20:48,900 adding 'Mikado/tests/transcript_tester_single.py' 2025-09-08T12:20:48,901 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2025-09-08T12:20:48,903 adding 'Mikado/tests/trinity.gff3' 2025-09-08T12:20:48,905 adding 'Mikado/tests/trinity.gtf' 2025-09-08T12:20:48,906 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2025-09-08T12:20:48,907 adding 'Mikado/tests/trinity_stats.txt' 2025-09-08T12:20:49,615 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2025-09-08T12:20:49,657 adding 'Mikado/tests/utilities_tester.py' 2025-09-08T12:20:49,658 adding 'Mikado/tests/__pycache__/__init__.cpython-34.pyc' 2025-09-08T12:20:49,659 adding 'Mikado/tests/__pycache__/__init__.cpython-35.pyc' 2025-09-08T12:20:49,659 adding 'Mikado/tests/__pycache__/__init__.cpython-36.pyc' 2025-09-08T12:20:49,663 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc' 2025-09-08T12:20:49,667 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc' 2025-09-08T12:20:49,671 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc' 2025-09-08T12:20:49,672 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc' 2025-09-08T12:20:49,674 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc' 2025-09-08T12:20:49,675 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc' 2025-09-08T12:20:49,683 adding 'Mikado/tests/__pycache__/locus_tester.cpython-34.pyc' 2025-09-08T12:20:49,691 adding 'Mikado/tests/__pycache__/locus_tester.cpython-35.pyc' 2025-09-08T12:20:49,698 adding 'Mikado/tests/__pycache__/locus_tester.cpython-36.pyc' 2025-09-08T12:20:49,704 adding 'Mikado/tests/__pycache__/orf_tester.cpython-34.pyc' 2025-09-08T12:20:49,709 adding 'Mikado/tests/__pycache__/orf_tester.cpython-35.pyc' 2025-09-08T12:20:49,715 adding 'Mikado/tests/__pycache__/orf_tester.cpython-36.pyc' 2025-09-08T12:20:49,716 adding 'Mikado/tests/__pycache__/parser_testing.cpython-34.pyc' 2025-09-08T12:20:49,716 adding 'Mikado/tests/__pycache__/parser_testing.cpython-35.pyc' 2025-09-08T12:20:49,717 adding 'Mikado/tests/__pycache__/parser_testing.cpython-36.pyc' 2025-09-08T12:20:49,718 adding 'Mikado/tests/__pycache__/phases_checker.cpython-34.pyc' 2025-09-08T12:20:49,719 adding 'Mikado/tests/__pycache__/phases_checker.cpython-35.pyc' 2025-09-08T12:20:49,721 adding 'Mikado/tests/__pycache__/system_checks.cpython-35.pyc' 2025-09-08T12:20:49,723 adding 'Mikado/tests/__pycache__/test_bed12.cpython-36.pyc' 2025-09-08T12:20:49,724 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc' 2025-09-08T12:20:49,725 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc' 2025-09-08T12:20:49,726 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc' 2025-09-08T12:20:49,726 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc' 2025-09-08T12:20:49,727 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc' 2025-09-08T12:20:49,728 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc' 2025-09-08T12:20:49,729 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc' 2025-09-08T12:20:49,730 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc' 2025-09-08T12:20:49,731 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc' 2025-09-08T12:20:49,732 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc' 2025-09-08T12:20:49,733 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc' 2025-09-08T12:20:49,733 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc' 2025-09-08T12:20:49,734 adding 'Mikado/tests/__pycache__/test_gene.cpython-34.pyc' 2025-09-08T12:20:49,735 adding 'Mikado/tests/__pycache__/test_gene.cpython-35.pyc' 2025-09-08T12:20:49,735 adding 'Mikado/tests/__pycache__/test_gene.cpython-36.pyc' 2025-09-08T12:20:49,736 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc' 2025-09-08T12:20:49,737 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc' 2025-09-08T12:20:49,738 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc' 2025-09-08T12:20:49,739 adding 'Mikado/tests/__pycache__/test_json.cpython-34.pyc' 2025-09-08T12:20:49,740 adding 'Mikado/tests/__pycache__/test_json.cpython-35.pyc' 2025-09-08T12:20:49,741 adding 'Mikado/tests/__pycache__/test_json.cpython-36.pyc' 2025-09-08T12:20:49,742 adding 'Mikado/tests/__pycache__/test_metrics.cpython-34.pyc' 2025-09-08T12:20:49,743 adding 'Mikado/tests/__pycache__/test_metrics.cpython-35.pyc' 2025-09-08T12:20:49,744 adding 'Mikado/tests/__pycache__/test_metrics.cpython-36.pyc' 2025-09-08T12:20:49,745 adding 'Mikado/tests/__pycache__/test_modifications.cpython-34.pyc' 2025-09-08T12:20:49,746 adding 'Mikado/tests/__pycache__/test_modifications.cpython-35.pyc' 2025-09-08T12:20:49,747 adding 'Mikado/tests/__pycache__/test_modifications.cpython-36.pyc' 2025-09-08T12:20:49,748 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc' 2025-09-08T12:20:49,749 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc' 2025-09-08T12:20:49,751 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc' 2025-09-08T12:20:49,755 adding 'Mikado/tests/__pycache__/test_splitting.cpython-34.pyc' 2025-09-08T12:20:49,755 adding 'Mikado/tests/__pycache__/test_splitting.cpython-35.pyc' 2025-09-08T12:20:49,756 adding 'Mikado/tests/__pycache__/test_splitting.cpython-36.pyc' 2025-09-08T12:20:49,760 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc' 2025-09-08T12:20:49,764 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc' 2025-09-08T12:20:49,768 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc' 2025-09-08T12:20:49,769 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc' 2025-09-08T12:20:49,771 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc' 2025-09-08T12:20:49,773 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc' 2025-09-08T12:20:49,775 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc' 2025-09-08T12:20:49,777 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc' 2025-09-08T12:20:49,779 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc' 2025-09-08T12:20:49,782 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc' 2025-09-08T12:20:49,785 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc' 2025-09-08T12:20:49,788 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc' 2025-09-08T12:20:49,793 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc' 2025-09-08T12:20:49,798 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc' 2025-09-08T12:20:49,803 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc' 2025-09-08T12:20:49,807 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc' 2025-09-08T12:20:49,811 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc' 2025-09-08T12:20:49,814 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc' 2025-09-08T12:20:49,815 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc' 2025-09-08T12:20:49,817 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc' 2025-09-08T12:20:49,818 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc' 2025-09-08T12:20:49,819 adding 'Mikado/tests/fusion_test/fusion_test.log' 2025-09-08T12:20:49,820 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2025-09-08T12:20:49,821 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2025-09-08T12:20:49,822 adding 'Mikado/transcripts/__init__.py' 2025-09-08T12:20:49,824 adding 'Mikado/transcripts/clique_methods.py' 2025-09-08T12:20:49,834 adding 'Mikado/transcripts/transcript.py' 2025-09-08T12:20:49,837 adding 'Mikado/transcripts/transcriptchecker.py' 2025-09-08T12:20:49,838 adding 'Mikado/transcripts/transcript_methods/__init__.py' 2025-09-08T12:20:49,841 adding 'Mikado/transcripts/transcript_methods/finalizing.py' 2025-09-08T12:20:49,843 adding 'Mikado/transcripts/transcript_methods/printing.py' 2025-09-08T12:20:49,846 adding 'Mikado/transcripts/transcript_methods/retrieval.py' 2025-09-08T12:20:49,850 adding 'Mikado/transcripts/transcript_methods/splitting.py' 2025-09-08T12:20:49,851 adding 'Mikado/utilities/__init__.py' 2025-09-08T12:20:49,852 adding 'Mikado/utilities/dbutils.py' 2025-09-08T12:20:49,922 adding 'Mikado/utilities/intervaltree.c' 2025-09-08T12:20:50,140 adding 'Mikado/utilities/intervaltree.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T12:20:50,149 adding 'Mikado/utilities/intervaltree.pyx' 2025-09-08T12:20:50,151 adding 'Mikado/utilities/log_utils.py' 2025-09-08T12:20:50,183 adding 'Mikado/utilities/overlap.c' 2025-09-08T12:20:50,234 adding 'Mikado/utilities/overlap.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T12:20:50,236 adding 'Mikado/utilities/overlap.pxd' 2025-09-08T12:20:50,237 adding 'Mikado/utilities/overlap.pyx' 2025-09-08T12:20:50,238 adding 'mikado-1.2.data/scripts/add_transcript_feature_to_gtf.py' 2025-09-08T12:20:50,239 adding 'mikado-1.2.data/scripts/align_collect.py' 2025-09-08T12:20:50,240 adding 'mikado-1.2.data/scripts/analyse_metrics.py' 2025-09-08T12:20:50,241 adding 'mikado-1.2.data/scripts/asm_collect.py' 2025-09-08T12:20:50,242 adding 'mikado-1.2.data/scripts/bam2gtf.py' 2025-09-08T12:20:50,244 adding 'mikado-1.2.data/scripts/calculate_distances.py' 2025-09-08T12:20:50,245 adding 'mikado-1.2.data/scripts/class_run.py' 2025-09-08T12:20:50,246 adding 'mikado-1.2.data/scripts/convert_cdna_match_gff3.py' 2025-09-08T12:20:50,247 adding 'mikado-1.2.data/scripts/create_model.py' 2025-09-08T12:20:50,248 adding 'mikado-1.2.data/scripts/extract_promoter_regions.py' 2025-09-08T12:20:50,249 adding 'mikado-1.2.data/scripts/getFastaFromIds.py' 2025-09-08T12:20:50,250 adding 'mikado-1.2.data/scripts/gffjunc_to_bed12.py' 2025-09-08T12:20:50,251 adding 'mikado-1.2.data/scripts/grep.py' 2025-09-08T12:20:50,252 adding 'mikado-1.2.data/scripts/merge_junction_bed12.py' 2025-09-08T12:20:50,253 adding 'mikado-1.2.data/scripts/remove_from_embl.py' 2025-09-08T12:20:50,254 adding 'mikado-1.2.data/scripts/remove_utrs.py' 2025-09-08T12:20:50,255 adding 'mikado-1.2.data/scripts/sanitize_blast_db.py' 2025-09-08T12:20:50,257 adding 'mikado-1.2.data/scripts/self_training.py' 2025-09-08T12:20:50,258 adding 'mikado-1.2.data/scripts/split_fasta.py' 2025-09-08T12:20:50,259 adding 'mikado-1.2.data/scripts/tease_maker_apart.py' 2025-09-08T12:20:50,260 adding 'mikado-1.2.data/scripts/trim_long_introns.py' 2025-09-08T12:20:50,261 adding 'mikado-1.2.dist-info/licenses/AUTHORS' 2025-09-08T12:20:50,262 adding 'mikado-1.2.dist-info/METADATA' 2025-09-08T12:20:50,263 adding 'mikado-1.2.dist-info/WHEEL' 2025-09-08T12:20:50,263 adding 'mikado-1.2.dist-info/entry_points.txt' 2025-09-08T12:20:50,264 adding 'mikado-1.2.dist-info/top_level.txt' 2025-09-08T12:20:50,268 adding 'mikado-1.2.dist-info/RECORD' 2025-09-08T12:20:50,271 removing build/bdist.linux-armv7l/wheel 2025-09-08T12:20:50,434 Building wheel for mikado (setup.py): finished with status 'done' 2025-09-08T12:20:50,611 Created wheel for mikado: filename=mikado-1.2-cp313-cp313-linux_armv7l.whl size=17763965 sha256=b63a957bbb27cd561f5370b31d5c05479d9eb8d059d348d126bf884f10ca2121 2025-09-08T12:20:50,611 Stored in directory: /tmp/pip-ephem-wheel-cache-8llqajid/wheels/97/0e/0f/aefe47f3a79a630c24bf19cef08a942b4b32760fc5c2f5a597 2025-09-08T12:20:50,625 Successfully built mikado 2025-09-08T12:20:50,663 Removed build tracker: '/tmp/pip-build-tracker-7ikaosbi'