2025-09-08T12:27:15,860 Created temporary directory: /tmp/pip-build-tracker-ej_t51il
2025-09-08T12:27:15,861 Initialized build tracking at /tmp/pip-build-tracker-ej_t51il
2025-09-08T12:27:15,861 Created build tracker: /tmp/pip-build-tracker-ej_t51il
2025-09-08T12:27:15,861 Entered build tracker: /tmp/pip-build-tracker-ej_t51il
2025-09-08T12:27:15,861 Created temporary directory: /tmp/pip-wheel-f0kby9uq
2025-09-08T12:27:15,864 Created temporary directory: /tmp/pip-ephem-wheel-cache-yw_z222q
2025-09-08T12:27:15,922 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T12:27:15,925 2 location(s) to search for versions of pyxmolpp2:
2025-09-08T12:27:15,925 * https://pypi.org/simple/pyxmolpp2/
2025-09-08T12:27:15,925 * https://www.piwheels.org/simple/pyxmolpp2/
2025-09-08T12:27:15,925 Fetching project page and analyzing links: https://pypi.org/simple/pyxmolpp2/
2025-09-08T12:27:15,925 Getting page https://pypi.org/simple/pyxmolpp2/
2025-09-08T12:27:15,926 Found index url https://pypi.org/simple/
2025-09-08T12:27:15,997 Fetched page https://pypi.org/simple/pyxmolpp2/ as application/vnd.pypi.simple.v1+json
2025-09-08T12:27:16,001   Found link https://files.pythonhosted.org/packages/41/1d/65a5e96d7d0c86d687b4e7e8d10ac232f573e14b9d1884111ebd1a477502/pyxmolpp2-0.0.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.0.1
2025-09-08T12:27:16,002   Found link https://files.pythonhosted.org/packages/e2/27/027a784be451eb7fe624a90523f4f289d6814db90adddbf09318ae136e4e/pyxmolpp2-0.1.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.1.0
2025-09-08T12:27:16,002   Found link https://files.pythonhosted.org/packages/49/94/6e7b42f4898aff76225a6e7ac3148dd53fd871a8cf1fa87876b5e5661fe4/pyxmolpp2-0.1.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.1.1
2025-09-08T12:27:16,002   Found link https://files.pythonhosted.org/packages/d9/89/7e348a861f1cbf78307f4617881c0996e74b38ab6f1d5d927b5be3c8b934/pyxmolpp2-0.2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.2.0
2025-09-08T12:27:16,002   Found link https://files.pythonhosted.org/packages/8c/89/16cf719b01cb66c3f62f5540abeca7bc26a1dbe7cd83c048d94dd4c60c37/pyxmolpp2-0.3.0.dev0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0.dev0
2025-09-08T12:27:16,003   Found link https://files.pythonhosted.org/packages/32/94/5d324e82f3785ea81d6913a781e674f95995cbaa54ec32171d0da3056f1c/pyxmolpp2-0.3.0.dev1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0.dev1
2025-09-08T12:27:16,003   Found link https://files.pythonhosted.org/packages/66/fa/f3e3cd5cdf297b37e10a8131075358a3e663831b965ce71900122e765d06/pyxmolpp2-0.3.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0
2025-09-08T12:27:16,003   Found link https://files.pythonhosted.org/packages/db/70/90e7913b6629f135ab3f8dcfae9c428aaf311e981db0caada01f51c8751a/pyxmolpp2-0.4.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.4.0
2025-09-08T12:27:16,003   Found link https://files.pythonhosted.org/packages/ea/1d/22d1b9eff0ed0b73bb8ba213c459a8818103847199add714dec7c0862c9b/pyxmolpp2-0.6.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.6.0
2025-09-08T12:27:16,003   Found link https://files.pythonhosted.org/packages/fb/26/6420cdf2349c7bbdf98f58cdb260e1ed0dee55d290cdab6b79d99b457ef9/pyxmolpp2-0.6.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.6.1
2025-09-08T12:27:16,004   Found link https://files.pythonhosted.org/packages/27/33/21c7acd6275667d94465436e150f6f3724935c4fd171dd51db516d5a3495/pyxmolpp2-0.7.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.7.0
2025-09-08T12:27:16,004   Found link https://files.pythonhosted.org/packages/7b/36/aac554b63b1e7fd94ead8a17af4a3d968b9ebab94c905369d5ec20a140f0/pyxmolpp2-0.7.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.7.1
2025-09-08T12:27:16,004   Found link https://files.pythonhosted.org/packages/e0/ad/0e16148eed09fc4190458935fbbf948aaa2794d1620842f0e3fc3aaa7f14/pyxmolpp2-0.8.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.0
2025-09-08T12:27:16,004   Found link https://files.pythonhosted.org/packages/1a/97/f5a5894f690501edb1f32ce0373f364abd70a55293b4222a2e8fd2b62b08/pyxmolpp2-0.8.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.1
2025-09-08T12:27:16,005   Found link https://files.pythonhosted.org/packages/c7/ed/0784103f8a79a3c24b71e560ef517c623b029a04c2c4f67820a70bc68f27/pyxmolpp2-0.8.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.2
2025-09-08T12:27:16,005   Found link https://files.pythonhosted.org/packages/85/17/8ab6537831012139ee04eaba92e3eb2b1724a81c3ed27f191b3d28f6789c/pyxmolpp2-0.9.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.9.0
2025-09-08T12:27:16,005   Found link https://files.pythonhosted.org/packages/55/4b/d6906a0c33681b8f03fa9497cd40a74b069c7393351927dd772503d0ecfb/pyxmolpp2-0.9.0.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.9.0.post1
2025-09-08T12:27:16,005   Found link https://files.pythonhosted.org/packages/b7/9b/fb4bb3e07ea292b34f258da0a9f08ae96f18a990477d2f7714319dc11bb1/pyxmolpp2-0.10.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.0
2025-09-08T12:27:16,005   Found link https://files.pythonhosted.org/packages/50/38/47ab868258a00a5d017424f8d5456a3718a475f1a854bdc999df7f116075/pyxmolpp2-0.10.1.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.1.post1
2025-09-08T12:27:16,006   Found link https://files.pythonhosted.org/packages/26/fc/9e70d088b5e6fd688e01c0f13ac748d813f813b8a358bacb8eb66d1971fb/pyxmolpp2-0.10.1.post2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.1.post2
2025-09-08T12:27:16,006   Found link https://files.pythonhosted.org/packages/64/1e/ab2524f122b9966e8c51e2228fdde7f00d7475eec722a27b80aa3e26bfad/pyxmolpp2-0.10.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.2
2025-09-08T12:27:16,006   Found link https://files.pythonhosted.org/packages/ac/ac/417e76e0eb127e941fb6599915dd543a50e115925180fe97c83a6947ef5d/pyxmolpp2-0.10.3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.3
2025-09-08T12:27:16,006   Found link https://files.pythonhosted.org/packages/60/57/46db548b97f72c8ce5fbdc48392cf8870cff33afb5e95d24d78dec9c23c4/pyxmolpp2-0.10.4.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.4
2025-09-08T12:27:16,006   Found link https://files.pythonhosted.org/packages/3a/2c/8275c969590e230dd2c56daab6e40d236df9736f268aa121ea426c97f819/pyxmolpp2-1.0.0.dev1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0.dev1
2025-09-08T12:27:16,007   Found link https://files.pythonhosted.org/packages/78/a7/ea6c951361316cf343a0f16da27f031ab2cfb16c90159ac52691540873fe/pyxmolpp2-1.0.0.dev3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0.dev3
2025-09-08T12:27:16,007   Found link https://files.pythonhosted.org/packages/dd/96/b6aa5603b5f40b892572e42338b23a75a78c162ec958f75f429cc4d05f34/pyxmolpp2-1.0.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0
2025-09-08T12:27:16,007   Found link https://files.pythonhosted.org/packages/b6/4f/9e63388cb7670452069a038097371bd5c87ea665ea9f9cd2b3009498ab0f/pyxmolpp2-1.1.0.dev0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0.dev0
2025-09-08T12:27:16,007   Found link https://files.pythonhosted.org/packages/07/ef/f93acfeedd3cfd180366afa66c555ef0ad5f59daa22a023f7d56a37b3774/pyxmolpp2-1.1.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0
2025-09-08T12:27:16,008   Found link https://files.pythonhosted.org/packages/40/25/974e02ffd74a29b48d37f7ead5988c4fc31554ab2439361dbe6ade50df5c/pyxmolpp2-1.1.0.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0.post1
2025-09-08T12:27:16,008   Found link https://files.pythonhosted.org/packages/94/eb/8b82d34f5f0fff1ae0ee57db7bc01d5c582896a21aa6c23a0691f8dd2cef/pyxmolpp2-1.2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.2.0
2025-09-08T12:27:16,008   Found link https://files.pythonhosted.org/packages/8e/37/8e017030208308e0c9b96ab4799e06229a1bc3e30eb5931aa65d7bd44fc6/pyxmolpp2-1.3.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.3.0
2025-09-08T12:27:16,008   Found link https://files.pythonhosted.org/packages/69/d9/818b1d2533d74bbc1b571061bc6eadb3e8179ad45f98b996e2e752bbb8d7/pyxmolpp2-1.4.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.4.0
2025-09-08T12:27:16,008   Found link https://files.pythonhosted.org/packages/4b/7d/3a0beee575fc48b90d6685200925e081c9f00a80785f6c3399460f7a3a36/pyxmolpp2-1.5.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.0
2025-09-08T12:27:16,009   Found link https://files.pythonhosted.org/packages/5b/2a/67fff35be6b97a56c5c21823a7e98765379b83dfc6f1875e5282cbd85267/pyxmolpp2-1.5.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.2
2025-09-08T12:27:16,009   Found link https://files.pythonhosted.org/packages/ea/be/6ff70c774714c681459f089f77e92bbc13fb9bd068727404f525e4a3dbbb/pyxmolpp2-1.5.3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.3
2025-09-08T12:27:16,009   Found link https://files.pythonhosted.org/packages/13/09/0b0c1f7ed58aa7605854268f7eaeadafed70cded0855d450b93fbe278cc0/pyxmolpp2-1.6.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.6.0
2025-09-08T12:27:16,009   Found link https://files.pythonhosted.org/packages/43/af/adb175fd4c9a52ddfd9e943962e1da8810579bc4a0643db7bfff99b8f8cb/pyxmolpp2-2.0a0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0a0
2025-09-08T12:27:16,009   Found link https://files.pythonhosted.org/packages/bd/65/7f96775c57a613b95a7abae1956572a570e9e488d9bb0b05241338a72774/pyxmolpp2-2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0
2025-09-08T12:27:16,010   Found link https://files.pythonhosted.org/packages/5a/bc/01f71b18a8713194f43920fb0d89e7ae3c219abeb0efc734f0bf3303c86f/pyxmolpp2-2.0.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0.2
2025-09-08T12:27:16,010 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyxmolpp2/
2025-09-08T12:27:16,010 Getting page https://www.piwheels.org/simple/pyxmolpp2/
2025-09-08T12:27:16,011 Found index url https://www.piwheels.org/simple/
2025-09-08T12:27:16,141 Fetched page https://www.piwheels.org/simple/pyxmolpp2/ as text/html
2025-09-08T12:27:16,144   Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp34-cp34m-linux_armv7l.whl#sha256=176920d3ec472d788331912a641cf8eb70e3eb87aac83c1e527ef33cdc152da6 (from https://www.piwheels.org/simple/pyxmolpp2/)
2025-09-08T12:27:16,144   Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp34-cp34m-linux_armv6l.whl#sha256=176920d3ec472d788331912a641cf8eb70e3eb87aac83c1e527ef33cdc152da6 (from https://www.piwheels.org/simple/pyxmolpp2/)
2025-09-08T12:27:16,145   Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=7f7fc7bce046e180693cc029132c8ab2ee085fd82c822f949a0e7852b96e50e0 (from https://www.piwheels.org/simple/pyxmolpp2/)
2025-09-08T12:27:16,145   Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=7f7fc7bce046e180693cc029132c8ab2ee085fd82c822f949a0e7852b96e50e0 (from https://www.piwheels.org/simple/pyxmolpp2/)
2025-09-08T12:27:16,145 Skipping link: not a file: https://www.piwheels.org/simple/pyxmolpp2/
2025-09-08T12:27:16,146 Skipping link: not a file: https://pypi.org/simple/pyxmolpp2/
2025-09-08T12:27:16,180 Given no hashes to check 1 links for project 'pyxmolpp2': discarding no candidates
2025-09-08T12:27:16,181 Collecting pyxmolpp2==0.1.0
2025-09-08T12:27:16,182   Created temporary directory: /tmp/pip-unpack-fka6kc92
2025-09-08T12:27:16,455   Downloading pyxmolpp2-0.1.0.tar.gz (4.5 MB)
2025-09-08T12:27:19,125   Added pyxmolpp2==0.1.0 from https://files.pythonhosted.org/packages/e2/27/027a784be451eb7fe624a90523f4f289d6814db90adddbf09318ae136e4e/pyxmolpp2-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-ej_t51il'
2025-09-08T12:27:19,126   Running setup.py (path:/tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb/setup.py) egg_info for package pyxmolpp2
2025-09-08T12:27:19,127   Created temporary directory: /tmp/pip-pip-egg-info-s93l3mr8
2025-09-08T12:27:19,127   Preparing metadata (setup.py): started
2025-09-08T12:27:19,128   Running command python setup.py egg_info
2025-09-08T12:27:19,843   fatal: not a git repository (or any parent up to mount point /)
2025-09-08T12:27:19,843   Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
2025-09-08T12:27:20,294   running egg_info
2025-09-08T12:27:20,369   creating /tmp/pip-pip-egg-info-s93l3mr8/pyxmolpp2.egg-info
2025-09-08T12:27:20,369   writing /tmp/pip-pip-egg-info-s93l3mr8/pyxmolpp2.egg-info/PKG-INFO
2025-09-08T12:27:20,370   writing dependency_links to /tmp/pip-pip-egg-info-s93l3mr8/pyxmolpp2.egg-info/dependency_links.txt
2025-09-08T12:27:20,371   writing top-level names to /tmp/pip-pip-egg-info-s93l3mr8/pyxmolpp2.egg-info/top_level.txt
2025-09-08T12:27:20,371   writing manifest file '/tmp/pip-pip-egg-info-s93l3mr8/pyxmolpp2.egg-info/SOURCES.txt'
2025-09-08T12:27:20,515   reading manifest file '/tmp/pip-pip-egg-info-s93l3mr8/pyxmolpp2.egg-info/SOURCES.txt'
2025-09-08T12:27:20,515   reading manifest template 'MANIFEST.in'
2025-09-08T12:27:20,883   warning: no files found matching '.'
2025-09-08T12:27:20,884   warning: no files found matching '.'
2025-09-08T12:27:20,884   warning: no files found matching '.'
2025-09-08T12:27:20,891   warning: no previously-included files matching '.git' found anywhere in distribution
2025-09-08T12:27:20,896   warning: no previously-included files matching '.js' found anywhere in distribution
2025-09-08T12:27:20,902   warning: no previously-included files matching '.html' found anywhere in distribution
2025-09-08T12:27:20,908   warning: no previously-included files matching '.png' found anywhere in distribution
2025-09-08T12:27:20,914   warning: no previously-included files matching '.dox' found anywhere in distribution
2025-09-08T12:27:21,001   writing manifest file '/tmp/pip-pip-egg-info-s93l3mr8/pyxmolpp2.egg-info/SOURCES.txt'
2025-09-08T12:27:21,116   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T12:27:21,121   Source in /tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb has version 0.1.0, which satisfies requirement pyxmolpp2==0.1.0 from https://files.pythonhosted.org/packages/e2/27/027a784be451eb7fe624a90523f4f289d6814db90adddbf09318ae136e4e/pyxmolpp2-0.1.0.tar.gz
2025-09-08T12:27:21,121   Removed pyxmolpp2==0.1.0 from https://files.pythonhosted.org/packages/e2/27/027a784be451eb7fe624a90523f4f289d6814db90adddbf09318ae136e4e/pyxmolpp2-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-ej_t51il'
2025-09-08T12:27:21,124 Created temporary directory: /tmp/pip-unpack-vpluu6kf
2025-09-08T12:27:21,124 Created temporary directory: /tmp/pip-unpack-8s_lxv12
2025-09-08T12:27:21,124 Building wheels for collected packages: pyxmolpp2
2025-09-08T12:27:21,126   Created temporary directory: /tmp/pip-wheel-axysrru0
2025-09-08T12:27:21,126   DEPRECATION: Building 'pyxmolpp2' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyxmolpp2'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T12:27:21,127   Building wheel for pyxmolpp2 (setup.py): started
2025-09-08T12:27:21,128   Destination directory: /tmp/pip-wheel-axysrru0
2025-09-08T12:27:21,128   Running command python setup.py bdist_wheel
2025-09-08T12:27:21,838   fatal: not a git repository (or any parent up to mount point /)
2025-09-08T12:27:21,838   Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
2025-09-08T12:27:22,212   running bdist_wheel
2025-09-08T12:27:22,505   running build
2025-09-08T12:27:22,505   running build_ext
2025-09-08T12:27:22,557   /tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb/setup.py:27: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
2025-09-08T12:27:22,557     cmake_version = LooseVersion(re.search(r'version\s*([\d.]+)', out.decode()).group(1))
2025-09-08T12:27:22,557   /tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb/setup.py:28: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
2025-09-08T12:27:22,558     if cmake_version < LooseVersion('3.5.0'):
2025-09-08T12:27:22,608   CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
2025-09-08T12:27:22,608     Compatibility with CMake < 3.10 will be removed from a future version of
2025-09-08T12:27:22,608     CMake.

2025-09-08T12:27:22,608     Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
2025-09-08T12:27:22,608     to tell CMake that the project requires at least <min> but has been updated
2025-09-08T12:27:22,608     to work with policies introduced by <max> or earlier.


2025-09-08T12:27:22,868   -- The C compiler identification is GNU 14.2.0
2025-09-08T12:27:23,172   -- The CXX compiler identification is GNU 14.2.0
2025-09-08T12:27:23,215   -- Detecting C compiler ABI info
2025-09-08T12:27:23,629   -- Detecting C compiler ABI info - done
2025-09-08T12:27:23,706   -- Check for working C compiler: /usr/bin/cc - skipped
2025-09-08T12:27:23,708   -- Detecting C compile features
2025-09-08T12:27:23,710   -- Detecting C compile features - done
2025-09-08T12:27:23,776   -- Detecting CXX compiler ABI info
2025-09-08T12:27:24,240   -- Detecting CXX compiler ABI info - done
2025-09-08T12:27:24,316   -- Check for working CXX compiler: /usr/bin/c++ - skipped
2025-09-08T12:27:24,318   -- Detecting CXX compile features
2025-09-08T12:27:24,321   -- Detecting CXX compile features - done
2025-09-08T12:27:24,354   CMake Warning (dev) at CMakeLists.txt:8 (find_package):
2025-09-08T12:27:24,355     Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
2025-09-08T12:27:24,355     are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
2025-09-08T12:27:24,355     the cmake_policy command to set the policy and suppress this warning.

2025-09-08T12:27:24,355   This warning is for project developers.  Use -Wno-dev to suppress it.

2025-09-08T12:27:24,423   -- Found PythonInterp: /usr/bin/python3 (found version "3.13.5")
2025-09-08T12:27:24,424   CMake Warning (dev) at CMakeLists.txt:9 (find_package):
2025-09-08T12:27:24,424     Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
2025-09-08T12:27:24,425     are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
2025-09-08T12:27:24,425     the cmake_policy command to set the policy and suppress this warning.

2025-09-08T12:27:24,425   This warning is for project developers.  Use -Wno-dev to suppress it.

2025-09-08T12:27:24,448   -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.13.so (found suitable version "3.13.5", minimum required is "3.13")
2025-09-08T12:27:24,448   Using default python version: 3.13.5
2025-09-08T12:27:24,448   DONT USE COVERAGE PROFILE
2025-09-08T12:27:24,450   CMake Deprecation Warning at external/googletest/CMakeLists.txt:1 (cmake_minimum_required):
2025-09-08T12:27:24,451     Compatibility with CMake < 3.10 will be removed from a future version of
2025-09-08T12:27:24,451     CMake.

2025-09-08T12:27:24,451     Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
2025-09-08T12:27:24,451     to tell CMake that the project requires at least <min> but has been updated
2025-09-08T12:27:24,451     to work with policies introduced by <max> or earlier.


2025-09-08T12:27:24,467   CMake Deprecation Warning at external/googletest/googlemock/CMakeLists.txt:46 (cmake_minimum_required):
2025-09-08T12:27:24,468     Compatibility with CMake < 3.10 will be removed from a future version of
2025-09-08T12:27:24,468     CMake.

2025-09-08T12:27:24,468     Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
2025-09-08T12:27:24,468     to tell CMake that the project requires at least <min> but has been updated
2025-09-08T12:27:24,468     to work with policies introduced by <max> or earlier.


2025-09-08T12:27:24,471   CMake Deprecation Warning at external/googletest/googletest/CMakeLists.txt:53 (cmake_minimum_required):
2025-09-08T12:27:24,471     Compatibility with CMake < 3.10 will be removed from a future version of
2025-09-08T12:27:24,471     CMake.

2025-09-08T12:27:24,472     Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
2025-09-08T12:27:24,472     to tell CMake that the project requires at least <min> but has been updated
2025-09-08T12:27:24,472     to work with policies introduced by <max> or earlier.


2025-09-08T12:27:24,473   CMake Warning (dev) at external/googletest/googletest/cmake/internal_utils.cmake:225 (find_package):
2025-09-08T12:27:24,473     Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
2025-09-08T12:27:24,473     are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
2025-09-08T12:27:24,473     the cmake_policy command to set the policy and suppress this warning.

2025-09-08T12:27:24,473   Call Stack (most recent call first):
2025-09-08T12:27:24,473     external/googletest/googletest/CMakeLists.txt:69 (include)
2025-09-08T12:27:24,473   This warning is for project developers.  Use -Wno-dev to suppress it.

2025-09-08T12:27:24,545   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
2025-09-08T12:27:25,026   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
2025-09-08T12:27:25,031   -- Found Threads: TRUE
2025-09-08T12:27:25,048   CMake Deprecation Warning at external/pybind11/CMakeLists.txt:8 (cmake_minimum_required):
2025-09-08T12:27:25,048     Compatibility with CMake < 3.10 will be removed from a future version of
2025-09-08T12:27:25,048     CMake.

2025-09-08T12:27:25,049     Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
2025-09-08T12:27:25,049     to tell CMake that the project requires at least <min> but has been updated
2025-09-08T12:27:25,049     to work with policies introduced by <max> or earlier.


2025-09-08T12:27:25,050   CMake Deprecation Warning at external/pybind11/tools/pybind11Tools.cmake:8 (cmake_minimum_required):
2025-09-08T12:27:25,050     Compatibility with CMake < 3.10 will be removed from a future version of
2025-09-08T12:27:25,050     CMake.

2025-09-08T12:27:25,050     Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
2025-09-08T12:27:25,050     to tell CMake that the project requires at least <min> but has been updated
2025-09-08T12:27:25,050     to work with policies introduced by <max> or earlier.
2025-09-08T12:27:25,050   Call Stack (most recent call first):
2025-09-08T12:27:25,050     external/pybind11/CMakeLists.txt:33 (include)


2025-09-08T12:27:25,051   CMake Warning (dev) at external/pybind11/tools/FindPythonLibsNew.cmake:60 (find_package):
2025-09-08T12:27:25,051     Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
2025-09-08T12:27:25,051     are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
2025-09-08T12:27:25,051     the cmake_policy command to set the policy and suppress this warning.

2025-09-08T12:27:25,052   Call Stack (most recent call first):
2025-09-08T12:27:25,052     external/pybind11/tools/pybind11Tools.cmake:16 (find_package)
2025-09-08T12:27:25,052     external/pybind11/CMakeLists.txt:33 (include)
2025-09-08T12:27:25,052   This warning is for project developers.  Use -Wno-dev to suppress it.

2025-09-08T12:27:25,711   -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.13.so
2025-09-08T12:27:25,733   -- pybind11 v2.3.dev0
2025-09-08T12:27:25,736   selectionTestsSources
2025-09-08T12:27:25,736   polymerTestsSources
2025-09-08T12:27:25,737   pdbTestsSources
2025-09-08T12:27:25,738   trjtoolTestsSources
2025-09-08T12:27:25,739   geometryTestsSources
2025-09-08T12:27:25,739   crystalTestsSources
2025-09-08T12:27:25,744   CMake Error at WriteVersionInfo.cmake:15 (message):
2025-09-08T12:27:25,745     message called with incorrect number of arguments
2025-09-08T12:27:25,745   Call Stack (most recent call first):
2025-09-08T12:27:25,745     CMakeLists.txt:49 (include)


2025-09-08T12:27:25,757   -- Performing Test HAS_FLTO
2025-09-08T12:27:26,412   -- Performing Test HAS_FLTO - Success
2025-09-08T12:27:26,413   -- LTO enabled
2025-09-08T12:27:26,415   -- Configuring incomplete, errors occurred!
2025-09-08T12:27:26,443   Traceback (most recent call last):
2025-09-08T12:27:26,451     File "<string>", line 2, in <module>
2025-09-08T12:27:26,451       exec(compile('''
2025-09-08T12:27:26,451       ~~~~^^^^^^^^^^^^
2025-09-08T12:27:26,451       # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T12:27:26,451       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T12:27:26,451       ...<32 lines>...
2025-09-08T12:27:26,452       exec(compile(setup_py_code, filename, "exec"))
2025-09-08T12:27:26,452       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T12:27:26,452       ''' % ('/tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb/setup.py',), "<pip-setuptools-caller>", "exec"))
2025-09-08T12:27:26,452       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T12:27:26,452     File "<pip-setuptools-caller>", line 35, in <module>
2025-09-08T12:27:26,452     File "/tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb/setup.py", line 67, in <module>
2025-09-08T12:27:26,453       setup(
2025-09-08T12:27:26,453       ~~~~~^
2025-09-08T12:27:26,453           name='pyxmolpp2',
2025-09-08T12:27:26,453           ^^^^^^^^^^^^^^^^^
2025-09-08T12:27:26,453       ...<9 lines>...
2025-09-08T12:27:26,453           zip_safe=False,
2025-09-08T12:27:26,453           ^^^^^^^^^^^^^^^
2025-09-08T12:27:26,453       )
2025-09-08T12:27:26,454       ^
2025-09-08T12:27:26,454     File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup
2025-09-08T12:27:26,454       return distutils.core.setup(**attrs)
2025-09-08T12:27:26,454              ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T12:27:26,454     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup
2025-09-08T12:27:26,454       return run_commands(dist)
2025-09-08T12:27:26,455     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands
2025-09-08T12:27:26,455       dist.run_commands()
2025-09-08T12:27:26,455       ~~~~~~~~~~~~~~~~~^^
2025-09-08T12:27:26,455     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands
2025-09-08T12:27:26,455       self.run_command(cmd)
2025-09-08T12:27:26,455       ~~~~~~~~~~~~~~~~^^^^^
2025-09-08T12:27:26,455     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-08T12:27:26,456       super().run_command(command)
2025-09-08T12:27:26,456       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T12:27:26,456     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-08T12:27:26,456       cmd_obj.run()
2025-09-08T12:27:26,456       ~~~~~~~~~~~^^
2025-09-08T12:27:26,456     File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run
2025-09-08T12:27:26,456       self.run_command("build")
2025-09-08T12:27:26,457       ~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T12:27:26,457     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-08T12:27:26,457       self.distribution.run_command(command)
2025-09-08T12:27:26,457       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T12:27:26,457     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-08T12:27:26,457       super().run_command(command)
2025-09-08T12:27:26,458       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T12:27:26,458     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-08T12:27:26,458       cmd_obj.run()
2025-09-08T12:27:26,458       ~~~~~~~~~~~^^
2025-09-08T12:27:26,458     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run
2025-09-08T12:27:26,458       self.run_command(cmd_name)
2025-09-08T12:27:26,458       ~~~~~~~~~~~~~~~~^^^^^^^^^^
2025-09-08T12:27:26,459     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-08T12:27:26,459       self.distribution.run_command(command)
2025-09-08T12:27:26,459       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T12:27:26,459     File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-08T12:27:26,459       super().run_command(command)
2025-09-08T12:27:26,459       ~~~~~~~~~~~~~~~~~~~^^^^^^^^^
2025-09-08T12:27:26,459     File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-08T12:27:26,460       cmd_obj.run()
2025-09-08T12:27:26,460       ~~~~~~~~~~~^^
2025-09-08T12:27:26,460     File "/tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb/setup.py", line 32, in run
2025-09-08T12:27:26,460       self.build_extension(ext)
2025-09-08T12:27:26,460       ~~~~~~~~~~~~~~~~~~~~^^^^^
2025-09-08T12:27:26,460     File "/tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb/setup.py", line 60, in build_extension
2025-09-08T12:27:26,461       subprocess.check_call(['cmake', ext.sourcedir] + cmake_args, cwd=self.build_temp, env=env)
2025-09-08T12:27:26,461       ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T12:27:26,461     File "/usr/lib/python3.13/subprocess.py", line 419, in check_call
2025-09-08T12:27:26,461       raise CalledProcessError(retcode, cmd)
2025-09-08T12:27:26,461   subprocess.CalledProcessError: Command '['cmake', '/tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb', '-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb/build/lib.linux-armv7l-cpython-313', '-DPYTHON_EXECUTABLE=/usr/bin/python3', '-DCMAKE_BUILD_WITH_INSTALL_RPATH=TRUE', '-DCMAKE_INSTALL_RPATH=$ORIGIN', '-DCMAKE_BUILD_TYPE=Release']' returned non-zero exit status 1.
2025-09-08T12:27:26,568   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T12:27:26,580   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T12:27:26,580   exec(compile('"'"''"'"''"'"'
2025-09-08T12:27:26,580   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T12:27:26,580   #
2025-09-08T12:27:26,580   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T12:27:26,580   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T12:27:26,580   # - It provides a clear error message when setuptools is not installed.
2025-09-08T12:27:26,580   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T12:27:26,580   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T12:27:26,580   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T12:27:26,580   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T12:27:26,580   import os, sys, tokenize, traceback
2025-09-08T12:27:26,580   
2025-09-08T12:27:26,580   try:
2025-09-08T12:27:26,580       import setuptools
2025-09-08T12:27:26,580   except ImportError:
2025-09-08T12:27:26,580       print(
2025-09-08T12:27:26,580           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T12:27:26,580           "the build environment with exception:",
2025-09-08T12:27:26,580           file=sys.stderr,
2025-09-08T12:27:26,580       )
2025-09-08T12:27:26,580       traceback.print_exc()
2025-09-08T12:27:26,580       sys.exit(1)
2025-09-08T12:27:26,580   
2025-09-08T12:27:26,580   __file__ = %r
2025-09-08T12:27:26,580   sys.argv[0] = __file__
2025-09-08T12:27:26,580   
2025-09-08T12:27:26,580   if os.path.exists(__file__):
2025-09-08T12:27:26,580       filename = __file__
2025-09-08T12:27:26,580       with tokenize.open(__file__) as f:
2025-09-08T12:27:26,580           setup_py_code = f.read()
2025-09-08T12:27:26,580   else:
2025-09-08T12:27:26,580       filename = "<auto-generated setuptools caller>"
2025-09-08T12:27:26,580       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T12:27:26,580   
2025-09-08T12:27:26,580   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T12:27:26,580   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-axysrru0[/]
2025-09-08T12:27:26,580   [bold magenta]cwd[/]: /tmp/pip-wheel-f0kby9uq/pyxmolpp2_ff61562bb97b42baa6c3e2f71a1c92fb/
2025-09-08T12:27:26,580   Building wheel for pyxmolpp2 (setup.py): finished with status 'error'
2025-09-08T12:27:26,581   ERROR: Failed building wheel for pyxmolpp2
2025-09-08T12:27:26,582   Running setup.py clean for pyxmolpp2
2025-09-08T12:27:26,582   Running command python setup.py clean
2025-09-08T12:27:27,293   fatal: not a git repository (or any parent up to mount point /)
2025-09-08T12:27:27,294   Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
2025-09-08T12:27:27,735   running clean
2025-09-08T12:27:27,880   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T12:27:27,882   'build/lib.linux-armv7l-cpython-313' does not exist -- can't clean it
2025-09-08T12:27:27,882   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T12:27:27,883   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T12:27:27,883   removing 'build'
2025-09-08T12:27:27,995 Failed to build pyxmolpp2
2025-09-08T12:27:27,996 ERROR: Failed to build one or more wheels
2025-09-08T12:27:27,997 Exception information:
2025-09-08T12:27:27,997 Traceback (most recent call last):
2025-09-08T12:27:27,997   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T12:27:27,997     status = _inner_run()
2025-09-08T12:27:27,997   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T12:27:27,997     return self.run(options, args)
2025-09-08T12:27:27,997            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T12:27:27,997   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T12:27:27,997     return func(self, options, args)
2025-09-08T12:27:27,997   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T12:27:27,997     raise CommandError("Failed to build one or more wheels")
2025-09-08T12:27:27,997 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T12:27:28,001 Removed build tracker: '/tmp/pip-build-tracker-ej_t51il'