2025-09-08T12:29:15,567 Created temporary directory: /tmp/pip-build-tracker-kv59dsv5
2025-09-08T12:29:15,568 Initialized build tracking at /tmp/pip-build-tracker-kv59dsv5
2025-09-08T12:29:15,568 Created build tracker: /tmp/pip-build-tracker-kv59dsv5
2025-09-08T12:29:15,568 Entered build tracker: /tmp/pip-build-tracker-kv59dsv5
2025-09-08T12:29:15,569 Created temporary directory: /tmp/pip-wheel-2n4nnum0
2025-09-08T12:29:15,572 Created temporary directory: /tmp/pip-ephem-wheel-cache-c7j62wl2
2025-09-08T12:29:15,628 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T12:29:15,630 2 location(s) to search for versions of hatshufflepy:
2025-09-08T12:29:15,630 * https://pypi.org/simple/hatshufflepy/
2025-09-08T12:29:15,630 * https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:29:15,631 Fetching project page and analyzing links: https://pypi.org/simple/hatshufflepy/
2025-09-08T12:29:15,631 Getting page https://pypi.org/simple/hatshufflepy/
2025-09-08T12:29:15,632 Found index url https://pypi.org/simple/
2025-09-08T12:29:15,839 Fetched page https://pypi.org/simple/hatshufflepy/ as application/vnd.pypi.simple.v1+json
2025-09-08T12:29:15,842   Found link https://files.pythonhosted.org/packages/2f/55/14d78ef177d725c0ddec3583bd5b9383440e399fa94e00aab8e519a0f850/hatshufflepy-0.0.1.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.1
2025-09-08T12:29:15,842   Found link https://files.pythonhosted.org/packages/65/e3/88ea19e93c06bd31230b273b46bad89c3fd39f5a25edc5485a2e8bc47802/hatshufflepy-0.0.2.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.2
2025-09-08T12:29:15,843   Found link https://files.pythonhosted.org/packages/27/6f/232dfb1720bec6a4327b3ea607eb148fb7e9c056d76c550993415d21c87a/hatshufflepy-0.0.3.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.3
2025-09-08T12:29:15,844   Found link https://files.pythonhosted.org/packages/31/bc/f2a7c97edee256489b4f10461688486d5f811a94a2ab1b6489f3ae7b624b/hatshufflepy-0.0.4.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.4
2025-09-08T12:29:15,844   Found link https://files.pythonhosted.org/packages/a9/0b/42071a0bef328b560c14eb80ce532ecd63a4178f6f3bec4b5c04eae9af8e/hatshufflepy-0.0.5.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.5
2025-09-08T12:29:15,844   Found link https://files.pythonhosted.org/packages/c3/5b/2bc2424b1b81c13141bacaff629c9be11a9442d165feb7b91312b16f991e/hatshufflepy-0.0.6.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.6
2025-09-08T12:29:15,845 Fetching project page and analyzing links: https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:29:15,846 Getting page https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:29:15,847 Found index url https://www.piwheels.org/simple/
2025-09-08T12:29:15,946 Fetched page https://www.piwheels.org/simple/hatshufflepy/ as text/html
2025-09-08T12:29:15,947 Skipping link: not a file: https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:29:15,947 Skipping link: not a file: https://pypi.org/simple/hatshufflepy/
2025-09-08T12:29:15,970 Given no hashes to check 1 links for project 'hatshufflepy': discarding no candidates
2025-09-08T12:29:15,971 Collecting hatshufflepy==0.0.1
2025-09-08T12:29:15,972   Created temporary directory: /tmp/pip-unpack-nvydy_rs
2025-09-08T12:29:16,117   Downloading hatshufflepy-0.0.1.tar.gz (4.7 MB)
2025-09-08T12:29:17,338   Added hatshufflepy==0.0.1 from https://files.pythonhosted.org/packages/2f/55/14d78ef177d725c0ddec3583bd5b9383440e399fa94e00aab8e519a0f850/hatshufflepy-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-kv59dsv5'
2025-09-08T12:29:17,339   Running setup.py (path:/tmp/pip-wheel-2n4nnum0/hatshufflepy_d42a32de185b4794900df708177cf227/setup.py) egg_info for package hatshufflepy
2025-09-08T12:29:17,339   Created temporary directory: /tmp/pip-pip-egg-info-u5n20sba
2025-09-08T12:29:17,340   Preparing metadata (setup.py): started
2025-09-08T12:29:17,341   Running command python setup.py egg_info
2025-09-08T12:29:19,677   Compiling hatshufflepy/hatshufflepy.pyx because it changed.
2025-09-08T12:29:19,677   [1/1] Cythonizing hatshufflepy/hatshufflepy.pyx
2025-09-08T12:29:19,776   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:19,776   !!

2025-09-08T12:29:19,776           ********************************************************************************
2025-09-08T12:29:19,776           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:19,776           versions. Please use the underscore name 'description_file' instead.

2025-09-08T12:29:19,776           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:19,776           or your builds will no longer be supported.

2025-09-08T12:29:19,777           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:19,777           ********************************************************************************

2025-09-08T12:29:19,777   !!
2025-09-08T12:29:19,777     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:20,062   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:20,062   !!

2025-09-08T12:29:20,062           ********************************************************************************
2025-09-08T12:29:20,062           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:20,062           versions. Please use the underscore name 'description_file' instead.
2025-09-08T12:29:20,062           (Affected: hatshufflepy).

2025-09-08T12:29:20,062           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:20,063           or your builds will no longer be supported.

2025-09-08T12:29:20,063           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:20,063           ********************************************************************************

2025-09-08T12:29:20,063   !!
2025-09-08T12:29:20,063     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:20,137   running egg_info
2025-09-08T12:29:20,210   creating /tmp/pip-pip-egg-info-u5n20sba/hatshufflepy.egg-info
2025-09-08T12:29:20,210   writing /tmp/pip-pip-egg-info-u5n20sba/hatshufflepy.egg-info/PKG-INFO
2025-09-08T12:29:20,211   writing dependency_links to /tmp/pip-pip-egg-info-u5n20sba/hatshufflepy.egg-info/dependency_links.txt
2025-09-08T12:29:20,212   writing requirements to /tmp/pip-pip-egg-info-u5n20sba/hatshufflepy.egg-info/requires.txt
2025-09-08T12:29:20,212   writing top-level names to /tmp/pip-pip-egg-info-u5n20sba/hatshufflepy.egg-info/top_level.txt
2025-09-08T12:29:20,212   writing manifest file '/tmp/pip-pip-egg-info-u5n20sba/hatshufflepy.egg-info/SOURCES.txt'
2025-09-08T12:29:20,358   reading manifest file '/tmp/pip-pip-egg-info-u5n20sba/hatshufflepy.egg-info/SOURCES.txt'
2025-09-08T12:29:20,358   reading manifest template 'MANIFEST.in'
2025-09-08T12:29:20,372   writing manifest file '/tmp/pip-pip-egg-info-u5n20sba/hatshufflepy.egg-info/SOURCES.txt'
2025-09-08T12:29:20,648   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T12:29:20,652   Source in /tmp/pip-wheel-2n4nnum0/hatshufflepy_d42a32de185b4794900df708177cf227 has version 0.0.1, which satisfies requirement hatshufflepy==0.0.1 from https://files.pythonhosted.org/packages/2f/55/14d78ef177d725c0ddec3583bd5b9383440e399fa94e00aab8e519a0f850/hatshufflepy-0.0.1.tar.gz
2025-09-08T12:29:20,652   Removed hatshufflepy==0.0.1 from https://files.pythonhosted.org/packages/2f/55/14d78ef177d725c0ddec3583bd5b9383440e399fa94e00aab8e519a0f850/hatshufflepy-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-kv59dsv5'
2025-09-08T12:29:20,655 Created temporary directory: /tmp/pip-unpack-zwf9tm4u
2025-09-08T12:29:20,656 Created temporary directory: /tmp/pip-unpack-8zqoh1ns
2025-09-08T12:29:20,656 Building wheels for collected packages: hatshufflepy
2025-09-08T12:29:20,657   Created temporary directory: /tmp/pip-wheel-1t3_3fis
2025-09-08T12:29:20,658   DEPRECATION: Building 'hatshufflepy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hatshufflepy'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T12:29:20,659   Building wheel for hatshufflepy (setup.py): started
2025-09-08T12:29:20,659   Destination directory: /tmp/pip-wheel-1t3_3fis
2025-09-08T12:29:20,659   Running command python setup.py bdist_wheel
2025-09-08T12:29:21,817   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:21,818   !!

2025-09-08T12:29:21,818           ********************************************************************************
2025-09-08T12:29:21,818           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:21,818           versions. Please use the underscore name 'description_file' instead.

2025-09-08T12:29:21,818           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:21,818           or your builds will no longer be supported.

2025-09-08T12:29:21,818           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:21,819           ********************************************************************************

2025-09-08T12:29:21,819   !!
2025-09-08T12:29:21,819     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:22,100   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:22,101   !!

2025-09-08T12:29:22,101           ********************************************************************************
2025-09-08T12:29:22,101           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:22,101           versions. Please use the underscore name 'description_file' instead.
2025-09-08T12:29:22,101           (Affected: hatshufflepy).

2025-09-08T12:29:22,101           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:22,101           or your builds will no longer be supported.

2025-09-08T12:29:22,102           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:22,102           ********************************************************************************

2025-09-08T12:29:22,102   !!
2025-09-08T12:29:22,102     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:22,103   running bdist_wheel
2025-09-08T12:29:22,616   running build
2025-09-08T12:29:22,616   running build_ext
2025-09-08T12:29:22,623   building 'hatshufflepy' extension
2025-09-08T12:29:22,624   creating build/temp.linux-armv7l-cpython-313/hatshufflepy
2025-09-08T12:29:22,625   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ihatshufflepy/libhatshuffle/include/libhatshuffle -Ihatshufflepy/libhatshuffle/include -Ilibhatshuffle/include/libff -I/usr/include/python3.13 -c hatshufflepy/hatshufflepy.cpp -o build/temp.linux-armv7l-cpython-313/hatshufflepy/hatshufflepy.o -std=c++11 -fPIC -shared -w -static -O3
2025-09-08T12:29:35,373   creating build/lib.linux-armv7l-cpython-313
2025-09-08T12:29:35,373   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/hatshufflepy/hatshufflepy.o -L/usr/local/lib -Lhatshufflepy/libhatshuffle/lib -L/usr/lib/arm-linux-gnueabihf -Wl,--enable-new-dtags,-rpath,/tmp/pip-wheel-2n4nnum0/hatshufflepy_d42a32de185b4794900df708177cf227/hatshufflepy/libhatshuffle/lib -Wl,--enable-new-dtags,-rpath,./ -lzm -lff -lhatshuffle -o build/lib.linux-armv7l-cpython-313/hatshufflepy.cpython-313-arm-linux-gnueabihf.so -lgmp -fopenmp -g
2025-09-08T12:29:35,399   hatshufflepy/libhatshuffle/lib/libzm.so: file not recognized: file format not recognized
2025-09-08T12:29:35,400   collect2: error: ld returned 1 exit status
2025-09-08T12:29:35,401   error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1
2025-09-08T12:29:35,549   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T12:29:35,563   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T12:29:35,563   exec(compile('"'"''"'"''"'"'
2025-09-08T12:29:35,563   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T12:29:35,563   #
2025-09-08T12:29:35,563   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T12:29:35,563   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T12:29:35,563   # - It provides a clear error message when setuptools is not installed.
2025-09-08T12:29:35,563   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T12:29:35,563   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T12:29:35,563   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T12:29:35,563   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T12:29:35,563   import os, sys, tokenize, traceback
2025-09-08T12:29:35,563   
2025-09-08T12:29:35,563   try:
2025-09-08T12:29:35,563       import setuptools
2025-09-08T12:29:35,563   except ImportError:
2025-09-08T12:29:35,563       print(
2025-09-08T12:29:35,563           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T12:29:35,563           "the build environment with exception:",
2025-09-08T12:29:35,563           file=sys.stderr,
2025-09-08T12:29:35,563       )
2025-09-08T12:29:35,563       traceback.print_exc()
2025-09-08T12:29:35,563       sys.exit(1)
2025-09-08T12:29:35,563   
2025-09-08T12:29:35,563   __file__ = %r
2025-09-08T12:29:35,563   sys.argv[0] = __file__
2025-09-08T12:29:35,563   
2025-09-08T12:29:35,563   if os.path.exists(__file__):
2025-09-08T12:29:35,563       filename = __file__
2025-09-08T12:29:35,563       with tokenize.open(__file__) as f:
2025-09-08T12:29:35,563           setup_py_code = f.read()
2025-09-08T12:29:35,563   else:
2025-09-08T12:29:35,563       filename = "<auto-generated setuptools caller>"
2025-09-08T12:29:35,563       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T12:29:35,563   
2025-09-08T12:29:35,563   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T12:29:35,563   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-2n4nnum0/hatshufflepy_d42a32de185b4794900df708177cf227/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-1t3_3fis[/]
2025-09-08T12:29:35,563   [bold magenta]cwd[/]: /tmp/pip-wheel-2n4nnum0/hatshufflepy_d42a32de185b4794900df708177cf227/
2025-09-08T12:29:35,563   Building wheel for hatshufflepy (setup.py): finished with status 'error'
2025-09-08T12:29:35,564   ERROR: Failed building wheel for hatshufflepy
2025-09-08T12:29:35,565   Running setup.py clean for hatshufflepy
2025-09-08T12:29:35,566   Running command python setup.py clean
2025-09-08T12:29:36,724   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:36,724   !!

2025-09-08T12:29:36,725           ********************************************************************************
2025-09-08T12:29:36,725           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:36,725           versions. Please use the underscore name 'description_file' instead.

2025-09-08T12:29:36,725           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:36,725           or your builds will no longer be supported.

2025-09-08T12:29:36,725           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:36,725           ********************************************************************************

2025-09-08T12:29:36,726   !!
2025-09-08T12:29:36,726     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:37,008   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:37,008   !!

2025-09-08T12:29:37,008           ********************************************************************************
2025-09-08T12:29:37,008           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:37,008           versions. Please use the underscore name 'description_file' instead.
2025-09-08T12:29:37,009           (Affected: hatshufflepy).

2025-09-08T12:29:37,009           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:37,009           or your builds will no longer be supported.

2025-09-08T12:29:37,009           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:37,009           ********************************************************************************

2025-09-08T12:29:37,009   !!
2025-09-08T12:29:37,009     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:37,082   running clean
2025-09-08T12:29:37,225   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T12:29:37,226   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T12:29:37,226   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T12:29:37,226   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T12:29:37,227   removing 'build'
2025-09-08T12:29:37,369 Failed to build hatshufflepy
2025-09-08T12:29:37,370 ERROR: Failed to build one or more wheels
2025-09-08T12:29:37,371 Exception information:
2025-09-08T12:29:37,371 Traceback (most recent call last):
2025-09-08T12:29:37,371   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T12:29:37,371     status = _inner_run()
2025-09-08T12:29:37,371   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T12:29:37,371     return self.run(options, args)
2025-09-08T12:29:37,371            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T12:29:37,371   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T12:29:37,371     return func(self, options, args)
2025-09-08T12:29:37,371   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T12:29:37,371     raise CommandError("Failed to build one or more wheels")
2025-09-08T12:29:37,371 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T12:29:37,375 Removed build tracker: '/tmp/pip-build-tracker-kv59dsv5'