2025-09-08T12:29:18,025 Created temporary directory: /tmp/pip-build-tracker-nupxu2ah
2025-09-08T12:29:18,025 Initialized build tracking at /tmp/pip-build-tracker-nupxu2ah
2025-09-08T12:29:18,025 Created build tracker: /tmp/pip-build-tracker-nupxu2ah
2025-09-08T12:29:18,025 Entered build tracker: /tmp/pip-build-tracker-nupxu2ah
2025-09-08T12:29:18,026 Created temporary directory: /tmp/pip-wheel-ovqhi1dv
2025-09-08T12:29:18,029 Created temporary directory: /tmp/pip-ephem-wheel-cache-svgczwai
2025-09-08T12:29:18,086 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T12:29:18,088 2 location(s) to search for versions of hatshufflepy:
2025-09-08T12:29:18,088 * https://pypi.org/simple/hatshufflepy/
2025-09-08T12:29:18,088 * https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:29:18,088 Fetching project page and analyzing links: https://pypi.org/simple/hatshufflepy/
2025-09-08T12:29:18,089 Getting page https://pypi.org/simple/hatshufflepy/
2025-09-08T12:29:18,090 Found index url https://pypi.org/simple/
2025-09-08T12:29:18,160 Fetched page https://pypi.org/simple/hatshufflepy/ as application/vnd.pypi.simple.v1+json
2025-09-08T12:29:18,161   Found link https://files.pythonhosted.org/packages/2f/55/14d78ef177d725c0ddec3583bd5b9383440e399fa94e00aab8e519a0f850/hatshufflepy-0.0.1.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.1
2025-09-08T12:29:18,162   Found link https://files.pythonhosted.org/packages/65/e3/88ea19e93c06bd31230b273b46bad89c3fd39f5a25edc5485a2e8bc47802/hatshufflepy-0.0.2.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.2
2025-09-08T12:29:18,162   Found link https://files.pythonhosted.org/packages/27/6f/232dfb1720bec6a4327b3ea607eb148fb7e9c056d76c550993415d21c87a/hatshufflepy-0.0.3.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.3
2025-09-08T12:29:18,162   Found link https://files.pythonhosted.org/packages/31/bc/f2a7c97edee256489b4f10461688486d5f811a94a2ab1b6489f3ae7b624b/hatshufflepy-0.0.4.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.4
2025-09-08T12:29:18,162   Found link https://files.pythonhosted.org/packages/a9/0b/42071a0bef328b560c14eb80ce532ecd63a4178f6f3bec4b5c04eae9af8e/hatshufflepy-0.0.5.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.5
2025-09-08T12:29:18,162   Found link https://files.pythonhosted.org/packages/c3/5b/2bc2424b1b81c13141bacaff629c9be11a9442d165feb7b91312b16f991e/hatshufflepy-0.0.6.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.6
2025-09-08T12:29:18,163 Fetching project page and analyzing links: https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:29:18,163 Getting page https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:29:18,164 Found index url https://www.piwheels.org/simple/
2025-09-08T12:29:18,249 Fetched page https://www.piwheels.org/simple/hatshufflepy/ as text/html
2025-09-08T12:29:18,250 Skipping link: not a file: https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:29:18,250 Skipping link: not a file: https://pypi.org/simple/hatshufflepy/
2025-09-08T12:29:18,274 Given no hashes to check 1 links for project 'hatshufflepy': discarding no candidates
2025-09-08T12:29:18,275 Collecting hatshufflepy==0.0.2
2025-09-08T12:29:18,277   Created temporary directory: /tmp/pip-unpack-8jotj3b5
2025-09-08T12:29:18,433   Downloading hatshufflepy-0.0.2.tar.gz (4.7 MB)
2025-09-08T12:29:19,541   Added hatshufflepy==0.0.2 from https://files.pythonhosted.org/packages/65/e3/88ea19e93c06bd31230b273b46bad89c3fd39f5a25edc5485a2e8bc47802/hatshufflepy-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-nupxu2ah'
2025-09-08T12:29:19,542   Running setup.py (path:/tmp/pip-wheel-ovqhi1dv/hatshufflepy_da1d7b56d11643da91f7ce85b37220f6/setup.py) egg_info for package hatshufflepy
2025-09-08T12:29:19,542   Created temporary directory: /tmp/pip-pip-egg-info-wk6mwwxr
2025-09-08T12:29:19,542   Preparing metadata (setup.py): started
2025-09-08T12:29:19,543   Running command python setup.py egg_info
2025-09-08T12:29:21,882   Compiling hatshufflepy/hatshufflepy.pyx because it changed.
2025-09-08T12:29:21,882   [1/1] Cythonizing hatshufflepy/hatshufflepy.pyx
2025-09-08T12:29:21,968   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:21,969   !!

2025-09-08T12:29:21,969           ********************************************************************************
2025-09-08T12:29:21,969           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:21,969           versions. Please use the underscore name 'description_file' instead.

2025-09-08T12:29:21,969           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:21,969           or your builds will no longer be supported.

2025-09-08T12:29:21,969           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:21,969           ********************************************************************************

2025-09-08T12:29:21,970   !!
2025-09-08T12:29:21,970     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:22,182   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:22,182   !!

2025-09-08T12:29:22,182           ********************************************************************************
2025-09-08T12:29:22,182           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:22,182           versions. Please use the underscore name 'description_file' instead.
2025-09-08T12:29:22,182           (Affected: hatshufflepy).

2025-09-08T12:29:22,182           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:22,183           or your builds will no longer be supported.

2025-09-08T12:29:22,183           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:22,183           ********************************************************************************

2025-09-08T12:29:22,183   !!
2025-09-08T12:29:22,183     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:22,277   running egg_info
2025-09-08T12:29:22,348   creating /tmp/pip-pip-egg-info-wk6mwwxr/hatshufflepy.egg-info
2025-09-08T12:29:22,348   writing /tmp/pip-pip-egg-info-wk6mwwxr/hatshufflepy.egg-info/PKG-INFO
2025-09-08T12:29:22,350   writing dependency_links to /tmp/pip-pip-egg-info-wk6mwwxr/hatshufflepy.egg-info/dependency_links.txt
2025-09-08T12:29:22,350   writing requirements to /tmp/pip-pip-egg-info-wk6mwwxr/hatshufflepy.egg-info/requires.txt
2025-09-08T12:29:22,350   writing top-level names to /tmp/pip-pip-egg-info-wk6mwwxr/hatshufflepy.egg-info/top_level.txt
2025-09-08T12:29:22,351   writing manifest file '/tmp/pip-pip-egg-info-wk6mwwxr/hatshufflepy.egg-info/SOURCES.txt'
2025-09-08T12:29:22,493   reading manifest file '/tmp/pip-pip-egg-info-wk6mwwxr/hatshufflepy.egg-info/SOURCES.txt'
2025-09-08T12:29:22,494   reading manifest template 'MANIFEST.in'
2025-09-08T12:29:22,507   writing manifest file '/tmp/pip-pip-egg-info-wk6mwwxr/hatshufflepy.egg-info/SOURCES.txt'
2025-09-08T12:29:22,785   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T12:29:22,789   Source in /tmp/pip-wheel-ovqhi1dv/hatshufflepy_da1d7b56d11643da91f7ce85b37220f6 has version 0.0.2, which satisfies requirement hatshufflepy==0.0.2 from https://files.pythonhosted.org/packages/65/e3/88ea19e93c06bd31230b273b46bad89c3fd39f5a25edc5485a2e8bc47802/hatshufflepy-0.0.2.tar.gz
2025-09-08T12:29:22,790   Removed hatshufflepy==0.0.2 from https://files.pythonhosted.org/packages/65/e3/88ea19e93c06bd31230b273b46bad89c3fd39f5a25edc5485a2e8bc47802/hatshufflepy-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-nupxu2ah'
2025-09-08T12:29:22,793 Created temporary directory: /tmp/pip-unpack-o57kb86l
2025-09-08T12:29:22,793 Created temporary directory: /tmp/pip-unpack-xha6_rob
2025-09-08T12:29:22,793 Building wheels for collected packages: hatshufflepy
2025-09-08T12:29:22,794   Created temporary directory: /tmp/pip-wheel-luhpwbr3
2025-09-08T12:29:22,795   DEPRECATION: Building 'hatshufflepy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hatshufflepy'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T12:29:22,796   Building wheel for hatshufflepy (setup.py): started
2025-09-08T12:29:22,796   Destination directory: /tmp/pip-wheel-luhpwbr3
2025-09-08T12:29:22,797   Running command python setup.py bdist_wheel
2025-09-08T12:29:23,947   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:23,947   !!

2025-09-08T12:29:23,947           ********************************************************************************
2025-09-08T12:29:23,948           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:23,948           versions. Please use the underscore name 'description_file' instead.

2025-09-08T12:29:23,948           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:23,948           or your builds will no longer be supported.

2025-09-08T12:29:23,948           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:23,948           ********************************************************************************

2025-09-08T12:29:23,948   !!
2025-09-08T12:29:23,948     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:24,150   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:24,150   !!

2025-09-08T12:29:24,151           ********************************************************************************
2025-09-08T12:29:24,151           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:24,151           versions. Please use the underscore name 'description_file' instead.
2025-09-08T12:29:24,151           (Affected: hatshufflepy).

2025-09-08T12:29:24,151           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:24,151           or your builds will no longer be supported.

2025-09-08T12:29:24,151           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:24,151           ********************************************************************************

2025-09-08T12:29:24,152   !!
2025-09-08T12:29:24,152     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:24,178   running bdist_wheel
2025-09-08T12:29:24,450   running build
2025-09-08T12:29:24,450   running build_ext
2025-09-08T12:29:24,458   building 'hatshufflepy' extension
2025-09-08T12:29:24,459   creating build/temp.linux-armv7l-cpython-313/hatshufflepy
2025-09-08T12:29:24,460   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ihatshufflepy/libhatshuffle/include/libhatshuffle -Ihatshufflepy/libhatshuffle/include -Ilibhatshuffle/include/libff -I/usr/include/python3.13 -c hatshufflepy/hatshufflepy.cpp -o build/temp.linux-armv7l-cpython-313/hatshufflepy/hatshufflepy.o -std=c++11 -fPIC -shared -w -static -O3
2025-09-08T12:29:37,234   creating build/lib.linux-armv7l-cpython-313
2025-09-08T12:29:37,234   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/hatshufflepy/hatshufflepy.o -L/usr/local/lib -Lhatshufflepy/libhatshuffle/lib -L/usr/lib/arm-linux-gnueabihf -Wl,--enable-new-dtags,-rpath,/tmp/pip-wheel-ovqhi1dv/hatshufflepy_da1d7b56d11643da91f7ce85b37220f6/hatshufflepy/libhatshuffle/lib -lzm -lff -lhatshuffle -o build/lib.linux-armv7l-cpython-313/hatshufflepy.cpython-313-arm-linux-gnueabihf.so -lgmp -fopenmp -g
2025-09-08T12:29:37,262   hatshufflepy/libhatshuffle/lib/libzm.so: file not recognized: file format not recognized
2025-09-08T12:29:37,263   collect2: error: ld returned 1 exit status
2025-09-08T12:29:37,265   error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1
2025-09-08T12:29:37,410   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T12:29:37,423   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T12:29:37,423   exec(compile('"'"''"'"''"'"'
2025-09-08T12:29:37,423   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T12:29:37,423   #
2025-09-08T12:29:37,423   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T12:29:37,423   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T12:29:37,423   # - It provides a clear error message when setuptools is not installed.
2025-09-08T12:29:37,423   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T12:29:37,423   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T12:29:37,423   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T12:29:37,423   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T12:29:37,423   import os, sys, tokenize, traceback
2025-09-08T12:29:37,423   
2025-09-08T12:29:37,423   try:
2025-09-08T12:29:37,423       import setuptools
2025-09-08T12:29:37,423   except ImportError:
2025-09-08T12:29:37,423       print(
2025-09-08T12:29:37,423           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T12:29:37,423           "the build environment with exception:",
2025-09-08T12:29:37,423           file=sys.stderr,
2025-09-08T12:29:37,423       )
2025-09-08T12:29:37,423       traceback.print_exc()
2025-09-08T12:29:37,423       sys.exit(1)
2025-09-08T12:29:37,423   
2025-09-08T12:29:37,423   __file__ = %r
2025-09-08T12:29:37,423   sys.argv[0] = __file__
2025-09-08T12:29:37,423   
2025-09-08T12:29:37,423   if os.path.exists(__file__):
2025-09-08T12:29:37,423       filename = __file__
2025-09-08T12:29:37,423       with tokenize.open(__file__) as f:
2025-09-08T12:29:37,423           setup_py_code = f.read()
2025-09-08T12:29:37,423   else:
2025-09-08T12:29:37,423       filename = "<auto-generated setuptools caller>"
2025-09-08T12:29:37,423       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T12:29:37,423   
2025-09-08T12:29:37,423   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T12:29:37,423   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ovqhi1dv/hatshufflepy_da1d7b56d11643da91f7ce85b37220f6/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-luhpwbr3[/]
2025-09-08T12:29:37,423   [bold magenta]cwd[/]: /tmp/pip-wheel-ovqhi1dv/hatshufflepy_da1d7b56d11643da91f7ce85b37220f6/
2025-09-08T12:29:37,423   Building wheel for hatshufflepy (setup.py): finished with status 'error'
2025-09-08T12:29:37,424   ERROR: Failed building wheel for hatshufflepy
2025-09-08T12:29:37,425   Running setup.py clean for hatshufflepy
2025-09-08T12:29:37,426   Running command python setup.py clean
2025-09-08T12:29:38,573   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:38,573   !!

2025-09-08T12:29:38,573           ********************************************************************************
2025-09-08T12:29:38,573           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:38,574           versions. Please use the underscore name 'description_file' instead.

2025-09-08T12:29:38,574           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:38,574           or your builds will no longer be supported.

2025-09-08T12:29:38,574           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:38,574           ********************************************************************************

2025-09-08T12:29:38,574   !!
2025-09-08T12:29:38,574     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:38,774   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:29:38,775   !!

2025-09-08T12:29:38,775           ********************************************************************************
2025-09-08T12:29:38,775           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:29:38,775           versions. Please use the underscore name 'description_file' instead.
2025-09-08T12:29:38,775           (Affected: hatshufflepy).

2025-09-08T12:29:38,775           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:29:38,775           or your builds will no longer be supported.

2025-09-08T12:29:38,776           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:29:38,776           ********************************************************************************

2025-09-08T12:29:38,776   !!
2025-09-08T12:29:38,776     opt = self._enforce_underscore(opt, section)
2025-09-08T12:29:38,844   running clean
2025-09-08T12:29:38,981   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T12:29:38,982   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T12:29:38,982   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T12:29:38,982   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T12:29:38,982   removing 'build'
2025-09-08T12:29:39,121 Failed to build hatshufflepy
2025-09-08T12:29:39,122 ERROR: Failed to build one or more wheels
2025-09-08T12:29:39,123 Exception information:
2025-09-08T12:29:39,123 Traceback (most recent call last):
2025-09-08T12:29:39,123   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T12:29:39,123     status = _inner_run()
2025-09-08T12:29:39,123   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T12:29:39,123     return self.run(options, args)
2025-09-08T12:29:39,123            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T12:29:39,123   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T12:29:39,123     return func(self, options, args)
2025-09-08T12:29:39,123   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T12:29:39,123     raise CommandError("Failed to build one or more wheels")
2025-09-08T12:29:39,123 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T12:29:39,127 Removed build tracker: '/tmp/pip-build-tracker-nupxu2ah'