2025-09-08T12:34:04,053 Created temporary directory: /tmp/pip-build-tracker-30aze5oc
2025-09-08T12:34:04,054 Initialized build tracking at /tmp/pip-build-tracker-30aze5oc
2025-09-08T12:34:04,054 Created build tracker: /tmp/pip-build-tracker-30aze5oc
2025-09-08T12:34:04,054 Entered build tracker: /tmp/pip-build-tracker-30aze5oc
2025-09-08T12:34:04,055 Created temporary directory: /tmp/pip-wheel-y6v9twuy
2025-09-08T12:34:04,058 Created temporary directory: /tmp/pip-ephem-wheel-cache-_lvgcx2s
2025-09-08T12:34:04,116 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T12:34:04,119 2 location(s) to search for versions of hatshufflepy:
2025-09-08T12:34:04,119 * https://pypi.org/simple/hatshufflepy/
2025-09-08T12:34:04,119 * https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:34:04,119 Fetching project page and analyzing links: https://pypi.org/simple/hatshufflepy/
2025-09-08T12:34:04,120 Getting page https://pypi.org/simple/hatshufflepy/
2025-09-08T12:34:04,121 Found index url https://pypi.org/simple/
2025-09-08T12:34:04,191 Fetched page https://pypi.org/simple/hatshufflepy/ as application/vnd.pypi.simple.v1+json
2025-09-08T12:34:04,192   Found link https://files.pythonhosted.org/packages/2f/55/14d78ef177d725c0ddec3583bd5b9383440e399fa94e00aab8e519a0f850/hatshufflepy-0.0.1.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.1
2025-09-08T12:34:04,192   Found link https://files.pythonhosted.org/packages/65/e3/88ea19e93c06bd31230b273b46bad89c3fd39f5a25edc5485a2e8bc47802/hatshufflepy-0.0.2.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.2
2025-09-08T12:34:04,193   Found link https://files.pythonhosted.org/packages/27/6f/232dfb1720bec6a4327b3ea607eb148fb7e9c056d76c550993415d21c87a/hatshufflepy-0.0.3.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.3
2025-09-08T12:34:04,193   Found link https://files.pythonhosted.org/packages/31/bc/f2a7c97edee256489b4f10461688486d5f811a94a2ab1b6489f3ae7b624b/hatshufflepy-0.0.4.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.4
2025-09-08T12:34:04,193   Found link https://files.pythonhosted.org/packages/a9/0b/42071a0bef328b560c14eb80ce532ecd63a4178f6f3bec4b5c04eae9af8e/hatshufflepy-0.0.5.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.5
2025-09-08T12:34:04,193   Found link https://files.pythonhosted.org/packages/c3/5b/2bc2424b1b81c13141bacaff629c9be11a9442d165feb7b91312b16f991e/hatshufflepy-0.0.6.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.6
2025-09-08T12:34:04,194 Fetching project page and analyzing links: https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:34:04,194 Getting page https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:34:04,195 Found index url https://www.piwheels.org/simple/
2025-09-08T12:34:04,276 Fetched page https://www.piwheels.org/simple/hatshufflepy/ as text/html
2025-09-08T12:34:04,277 Skipping link: not a file: https://www.piwheels.org/simple/hatshufflepy/
2025-09-08T12:34:04,277 Skipping link: not a file: https://pypi.org/simple/hatshufflepy/
2025-09-08T12:34:04,303 Given no hashes to check 1 links for project 'hatshufflepy': discarding no candidates
2025-09-08T12:34:04,304 Collecting hatshufflepy==0.0.4
2025-09-08T12:34:04,305   Created temporary directory: /tmp/pip-unpack-0n9x06c_
2025-09-08T12:34:04,453   Downloading hatshufflepy-0.0.4.tar.gz (4.7 MB)
2025-09-08T12:34:05,425   Added hatshufflepy==0.0.4 from https://files.pythonhosted.org/packages/31/bc/f2a7c97edee256489b4f10461688486d5f811a94a2ab1b6489f3ae7b624b/hatshufflepy-0.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-30aze5oc'
2025-09-08T12:34:05,427   Running setup.py (path:/tmp/pip-wheel-y6v9twuy/hatshufflepy_2f2dd89a89f94cb9b2b9daf80179141d/setup.py) egg_info for package hatshufflepy
2025-09-08T12:34:05,427   Created temporary directory: /tmp/pip-pip-egg-info-ay1enszp
2025-09-08T12:34:05,427   Preparing metadata (setup.py): started
2025-09-08T12:34:05,428   Running command python setup.py egg_info
2025-09-08T12:34:07,873   /tmp/pip-wheel-y6v9twuy/hatshufflepy_2f2dd89a89f94cb9b2b9daf80179141d
2025-09-08T12:34:07,873   Compiling hatshufflepy/hatshufflepy.pyx because it changed.
2025-09-08T12:34:07,873   [1/1] Cythonizing hatshufflepy/hatshufflepy.pyx
2025-09-08T12:34:07,970   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:34:07,970   !!

2025-09-08T12:34:07,970           ********************************************************************************
2025-09-08T12:34:07,970           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:34:07,971           versions. Please use the underscore name 'description_file' instead.

2025-09-08T12:34:07,971           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:34:07,971           or your builds will no longer be supported.

2025-09-08T12:34:07,971           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:34:07,971           ********************************************************************************

2025-09-08T12:34:07,971   !!
2025-09-08T12:34:07,971     opt = self._enforce_underscore(opt, section)
2025-09-08T12:34:08,268   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:34:08,268   !!

2025-09-08T12:34:08,269           ********************************************************************************
2025-09-08T12:34:08,269           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:34:08,269           versions. Please use the underscore name 'description_file' instead.
2025-09-08T12:34:08,269           (Affected: hatshufflepy).

2025-09-08T12:34:08,269           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:34:08,269           or your builds will no longer be supported.

2025-09-08T12:34:08,269           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:34:08,269           ********************************************************************************

2025-09-08T12:34:08,270   !!
2025-09-08T12:34:08,270     opt = self._enforce_underscore(opt, section)
2025-09-08T12:34:08,346   running egg_info
2025-09-08T12:34:08,421   creating /tmp/pip-pip-egg-info-ay1enszp/hatshufflepy.egg-info
2025-09-08T12:34:08,421   writing /tmp/pip-pip-egg-info-ay1enszp/hatshufflepy.egg-info/PKG-INFO
2025-09-08T12:34:08,422   writing dependency_links to /tmp/pip-pip-egg-info-ay1enszp/hatshufflepy.egg-info/dependency_links.txt
2025-09-08T12:34:08,423   writing requirements to /tmp/pip-pip-egg-info-ay1enszp/hatshufflepy.egg-info/requires.txt
2025-09-08T12:34:08,424   writing top-level names to /tmp/pip-pip-egg-info-ay1enszp/hatshufflepy.egg-info/top_level.txt
2025-09-08T12:34:08,424   writing manifest file '/tmp/pip-pip-egg-info-ay1enszp/hatshufflepy.egg-info/SOURCES.txt'
2025-09-08T12:34:08,572   reading manifest file '/tmp/pip-pip-egg-info-ay1enszp/hatshufflepy.egg-info/SOURCES.txt'
2025-09-08T12:34:08,573   reading manifest template 'MANIFEST.in'
2025-09-08T12:34:08,586   writing manifest file '/tmp/pip-pip-egg-info-ay1enszp/hatshufflepy.egg-info/SOURCES.txt'
2025-09-08T12:34:08,868   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T12:34:08,873   Source in /tmp/pip-wheel-y6v9twuy/hatshufflepy_2f2dd89a89f94cb9b2b9daf80179141d has version 0.0.4, which satisfies requirement hatshufflepy==0.0.4 from https://files.pythonhosted.org/packages/31/bc/f2a7c97edee256489b4f10461688486d5f811a94a2ab1b6489f3ae7b624b/hatshufflepy-0.0.4.tar.gz
2025-09-08T12:34:08,873   Removed hatshufflepy==0.0.4 from https://files.pythonhosted.org/packages/31/bc/f2a7c97edee256489b4f10461688486d5f811a94a2ab1b6489f3ae7b624b/hatshufflepy-0.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-30aze5oc'
2025-09-08T12:34:08,876 Created temporary directory: /tmp/pip-unpack-73pcnazt
2025-09-08T12:34:08,877 Created temporary directory: /tmp/pip-unpack-1rrcdkvr
2025-09-08T12:34:08,877 Building wheels for collected packages: hatshufflepy
2025-09-08T12:34:08,878   Created temporary directory: /tmp/pip-wheel-63nzjq2i
2025-09-08T12:34:08,878   DEPRECATION: Building 'hatshufflepy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hatshufflepy'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T12:34:08,880   Building wheel for hatshufflepy (setup.py): started
2025-09-08T12:34:08,880   Destination directory: /tmp/pip-wheel-63nzjq2i
2025-09-08T12:34:08,880   Running command python setup.py bdist_wheel
2025-09-08T12:34:09,585   /tmp/pip-wheel-y6v9twuy/hatshufflepy_2f2dd89a89f94cb9b2b9daf80179141d
2025-09-08T12:34:10,040   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:34:10,040   !!

2025-09-08T12:34:10,041           ********************************************************************************
2025-09-08T12:34:10,041           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:34:10,041           versions. Please use the underscore name 'description_file' instead.

2025-09-08T12:34:10,041           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:34:10,041           or your builds will no longer be supported.

2025-09-08T12:34:10,041           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:34:10,041           ********************************************************************************

2025-09-08T12:34:10,041   !!
2025-09-08T12:34:10,042     opt = self._enforce_underscore(opt, section)
2025-09-08T12:34:10,330   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:34:10,330   !!

2025-09-08T12:34:10,330           ********************************************************************************
2025-09-08T12:34:10,331           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:34:10,331           versions. Please use the underscore name 'description_file' instead.
2025-09-08T12:34:10,331           (Affected: hatshufflepy).

2025-09-08T12:34:10,331           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:34:10,331           or your builds will no longer be supported.

2025-09-08T12:34:10,331           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:34:10,331           ********************************************************************************

2025-09-08T12:34:10,332   !!
2025-09-08T12:34:10,332     opt = self._enforce_underscore(opt, section)
2025-09-08T12:34:10,333   running bdist_wheel
2025-09-08T12:34:10,622   running build
2025-09-08T12:34:10,622   running build_ext
2025-09-08T12:34:10,629   building 'hatshufflepy' extension
2025-09-08T12:34:10,631   creating build/temp.linux-armv7l-cpython-313/hatshufflepy
2025-09-08T12:34:10,631   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ihatshufflepy/libhatshuffle/include/libhatshuffle -Ihatshufflepy/libhatshuffle/include -Ilibhatshuffle/include/libff -I/usr/include/python3.13 -c hatshufflepy/hatshufflepy.cpp -o build/temp.linux-armv7l-cpython-313/hatshufflepy/hatshufflepy.o -std=c++11 -fPIC -shared -w -static -O3
2025-09-08T12:34:24,470   creating build/lib.linux-armv7l-cpython-313
2025-09-08T12:34:24,471   arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/hatshufflepy/hatshufflepy.o -L/usr/local/lib -Lhatshufflepy/libhatshuffle/lib -L/usr/lib/arm-linux-gnueabihf -Wl,--enable-new-dtags,-rpath,/tmp/pip-wheel-y6v9twuy/hatshufflepy_2f2dd89a89f94cb9b2b9daf80179141d/hatshufflepy/libhatshuffle/lib -Wl,--enable-new-dtags,-rpath,/usr/local/lib/python3.13/dist-packages/hatshufflepy -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages/hatshufflepy -lzm -lff -lhatshuffle -o build/lib.linux-armv7l-cpython-313/hatshufflepy.cpython-313-arm-linux-gnueabihf.so -lgmp -fopenmp -g
2025-09-08T12:34:24,496   hatshufflepy/libhatshuffle/lib/libzm.so: file not recognized: file format not recognized
2025-09-08T12:34:24,497   collect2: error: ld returned 1 exit status
2025-09-08T12:34:24,499   error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1
2025-09-08T12:34:24,658   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T12:34:24,670   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T12:34:24,670   exec(compile('"'"''"'"''"'"'
2025-09-08T12:34:24,670   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T12:34:24,670   #
2025-09-08T12:34:24,670   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T12:34:24,670   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T12:34:24,670   # - It provides a clear error message when setuptools is not installed.
2025-09-08T12:34:24,670   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T12:34:24,670   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T12:34:24,670   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T12:34:24,670   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T12:34:24,670   import os, sys, tokenize, traceback
2025-09-08T12:34:24,670   
2025-09-08T12:34:24,670   try:
2025-09-08T12:34:24,670       import setuptools
2025-09-08T12:34:24,670   except ImportError:
2025-09-08T12:34:24,670       print(
2025-09-08T12:34:24,670           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T12:34:24,670           "the build environment with exception:",
2025-09-08T12:34:24,670           file=sys.stderr,
2025-09-08T12:34:24,670       )
2025-09-08T12:34:24,670       traceback.print_exc()
2025-09-08T12:34:24,670       sys.exit(1)
2025-09-08T12:34:24,670   
2025-09-08T12:34:24,670   __file__ = %r
2025-09-08T12:34:24,670   sys.argv[0] = __file__
2025-09-08T12:34:24,670   
2025-09-08T12:34:24,670   if os.path.exists(__file__):
2025-09-08T12:34:24,670       filename = __file__
2025-09-08T12:34:24,670       with tokenize.open(__file__) as f:
2025-09-08T12:34:24,670           setup_py_code = f.read()
2025-09-08T12:34:24,670   else:
2025-09-08T12:34:24,670       filename = "<auto-generated setuptools caller>"
2025-09-08T12:34:24,670       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T12:34:24,670   
2025-09-08T12:34:24,670   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T12:34:24,670   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-y6v9twuy/hatshufflepy_2f2dd89a89f94cb9b2b9daf80179141d/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-63nzjq2i[/]
2025-09-08T12:34:24,670   [bold magenta]cwd[/]: /tmp/pip-wheel-y6v9twuy/hatshufflepy_2f2dd89a89f94cb9b2b9daf80179141d/
2025-09-08T12:34:24,670   Building wheel for hatshufflepy (setup.py): finished with status 'error'
2025-09-08T12:34:24,671   ERROR: Failed building wheel for hatshufflepy
2025-09-08T12:34:24,671   Running setup.py clean for hatshufflepy
2025-09-08T12:34:24,672   Running command python setup.py clean
2025-09-08T12:34:25,379   /tmp/pip-wheel-y6v9twuy/hatshufflepy_2f2dd89a89f94cb9b2b9daf80179141d
2025-09-08T12:34:25,839   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:34:25,839   !!

2025-09-08T12:34:25,839           ********************************************************************************
2025-09-08T12:34:25,839           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:34:25,839           versions. Please use the underscore name 'description_file' instead.

2025-09-08T12:34:25,839           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:34:25,840           or your builds will no longer be supported.

2025-09-08T12:34:25,840           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:34:25,840           ********************************************************************************

2025-09-08T12:34:25,840   !!
2025-09-08T12:34:25,840     opt = self._enforce_underscore(opt, section)
2025-09-08T12:34:26,124   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T12:34:26,125   !!

2025-09-08T12:34:26,125           ********************************************************************************
2025-09-08T12:34:26,125           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T12:34:26,125           versions. Please use the underscore name 'description_file' instead.
2025-09-08T12:34:26,125           (Affected: hatshufflepy).

2025-09-08T12:34:26,125           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T12:34:26,125           or your builds will no longer be supported.

2025-09-08T12:34:26,126           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T12:34:26,126           ********************************************************************************

2025-09-08T12:34:26,126   !!
2025-09-08T12:34:26,126     opt = self._enforce_underscore(opt, section)
2025-09-08T12:34:26,202   running clean
2025-09-08T12:34:26,346   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T12:34:26,347   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T12:34:26,347   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T12:34:26,347   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T12:34:26,347   removing 'build'
2025-09-08T12:34:26,491 Failed to build hatshufflepy
2025-09-08T12:34:26,492 ERROR: Failed to build one or more wheels
2025-09-08T12:34:26,492 Exception information:
2025-09-08T12:34:26,492 Traceback (most recent call last):
2025-09-08T12:34:26,492   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T12:34:26,492     status = _inner_run()
2025-09-08T12:34:26,492   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T12:34:26,492     return self.run(options, args)
2025-09-08T12:34:26,492            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T12:34:26,492   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T12:34:26,492     return func(self, options, args)
2025-09-08T12:34:26,492   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T12:34:26,492     raise CommandError("Failed to build one or more wheels")
2025-09-08T12:34:26,492 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T12:34:26,497 Removed build tracker: '/tmp/pip-build-tracker-30aze5oc'