2025-09-08T12:42:22,927 Created temporary directory: /tmp/pip-build-tracker-see31g3m 2025-09-08T12:42:22,928 Initialized build tracking at /tmp/pip-build-tracker-see31g3m 2025-09-08T12:42:22,928 Created build tracker: /tmp/pip-build-tracker-see31g3m 2025-09-08T12:42:22,928 Entered build tracker: /tmp/pip-build-tracker-see31g3m 2025-09-08T12:42:22,928 Created temporary directory: /tmp/pip-wheel-_7ozcvtc 2025-09-08T12:42:22,932 Created temporary directory: /tmp/pip-ephem-wheel-cache-u6dtyder 2025-09-08T12:42:22,992 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T12:42:22,994 2 location(s) to search for versions of hatshufflepy: 2025-09-08T12:42:22,994 * https://pypi.org/simple/hatshufflepy/ 2025-09-08T12:42:22,994 * https://www.piwheels.org/simple/hatshufflepy/ 2025-09-08T12:42:22,995 Fetching project page and analyzing links: https://pypi.org/simple/hatshufflepy/ 2025-09-08T12:42:22,995 Getting page https://pypi.org/simple/hatshufflepy/ 2025-09-08T12:42:22,996 Found index url https://pypi.org/simple/ 2025-09-08T12:42:23,069 Fetched page https://pypi.org/simple/hatshufflepy/ as application/vnd.pypi.simple.v1+json 2025-09-08T12:42:23,070 Found link https://files.pythonhosted.org/packages/2f/55/14d78ef177d725c0ddec3583bd5b9383440e399fa94e00aab8e519a0f850/hatshufflepy-0.0.1.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.1 2025-09-08T12:42:23,071 Found link https://files.pythonhosted.org/packages/65/e3/88ea19e93c06bd31230b273b46bad89c3fd39f5a25edc5485a2e8bc47802/hatshufflepy-0.0.2.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.2 2025-09-08T12:42:23,071 Found link https://files.pythonhosted.org/packages/27/6f/232dfb1720bec6a4327b3ea607eb148fb7e9c056d76c550993415d21c87a/hatshufflepy-0.0.3.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.3 2025-09-08T12:42:23,071 Found link https://files.pythonhosted.org/packages/31/bc/f2a7c97edee256489b4f10461688486d5f811a94a2ab1b6489f3ae7b624b/hatshufflepy-0.0.4.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.4 2025-09-08T12:42:23,071 Found link https://files.pythonhosted.org/packages/a9/0b/42071a0bef328b560c14eb80ce532ecd63a4178f6f3bec4b5c04eae9af8e/hatshufflepy-0.0.5.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.5 2025-09-08T12:42:23,072 Found link https://files.pythonhosted.org/packages/c3/5b/2bc2424b1b81c13141bacaff629c9be11a9442d165feb7b91312b16f991e/hatshufflepy-0.0.6.tar.gz (from https://pypi.org/simple/hatshufflepy/), version: 0.0.6 2025-09-08T12:42:23,072 Fetching project page and analyzing links: https://www.piwheels.org/simple/hatshufflepy/ 2025-09-08T12:42:23,072 Getting page https://www.piwheels.org/simple/hatshufflepy/ 2025-09-08T12:42:23,073 Found index url https://www.piwheels.org/simple/ 2025-09-08T12:42:23,164 Fetched page https://www.piwheels.org/simple/hatshufflepy/ as text/html 2025-09-08T12:42:23,165 Skipping link: not a file: https://www.piwheels.org/simple/hatshufflepy/ 2025-09-08T12:42:23,165 Skipping link: not a file: https://pypi.org/simple/hatshufflepy/ 2025-09-08T12:42:23,188 Given no hashes to check 1 links for project 'hatshufflepy': discarding no candidates 2025-09-08T12:42:23,189 Collecting hatshufflepy==0.0.5 2025-09-08T12:42:23,190 Created temporary directory: /tmp/pip-unpack-1h4wmsrp 2025-09-08T12:42:23,341 Downloading hatshufflepy-0.0.5.tar.gz (4.7 MB) 2025-09-08T12:42:24,493 Added hatshufflepy==0.0.5 from https://files.pythonhosted.org/packages/a9/0b/42071a0bef328b560c14eb80ce532ecd63a4178f6f3bec4b5c04eae9af8e/hatshufflepy-0.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-see31g3m' 2025-09-08T12:42:24,494 Running setup.py (path:/tmp/pip-wheel-_7ozcvtc/hatshufflepy_8f3895a23df64a199add28122b3f3870/setup.py) egg_info for package hatshufflepy 2025-09-08T12:42:24,494 Created temporary directory: /tmp/pip-pip-egg-info-xik_md_e 2025-09-08T12:42:24,495 Preparing metadata (setup.py): started 2025-09-08T12:42:24,495 Running command python setup.py egg_info 2025-09-08T12:42:26,931 /tmp/pip-wheel-_7ozcvtc/hatshufflepy_8f3895a23df64a199add28122b3f3870 2025-09-08T12:42:26,931 Compiling hatshufflepy/hatshufflepy.pyx because it changed. 2025-09-08T12:42:26,932 [1/1] Cythonizing hatshufflepy/hatshufflepy.pyx 2025-09-08T12:42:27,026 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T12:42:27,027 !! 2025-09-08T12:42:27,027 ******************************************************************************** 2025-09-08T12:42:27,027 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T12:42:27,027 versions. Please use the underscore name 'description_file' instead. 2025-09-08T12:42:27,027 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T12:42:27,027 or your builds will no longer be supported. 2025-09-08T12:42:27,027 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T12:42:27,027 ******************************************************************************** 2025-09-08T12:42:27,028 !! 2025-09-08T12:42:27,028 opt = self._enforce_underscore(opt, section) 2025-09-08T12:42:27,311 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T12:42:27,311 !! 2025-09-08T12:42:27,311 ******************************************************************************** 2025-09-08T12:42:27,311 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T12:42:27,311 versions. Please use the underscore name 'description_file' instead. 2025-09-08T12:42:27,311 (Affected: hatshufflepy). 2025-09-08T12:42:27,312 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T12:42:27,312 or your builds will no longer be supported. 2025-09-08T12:42:27,312 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T12:42:27,312 ******************************************************************************** 2025-09-08T12:42:27,312 !! 2025-09-08T12:42:27,312 opt = self._enforce_underscore(opt, section) 2025-09-08T12:42:27,385 running egg_info 2025-09-08T12:42:27,459 creating /tmp/pip-pip-egg-info-xik_md_e/hatshufflepy.egg-info 2025-09-08T12:42:27,459 writing /tmp/pip-pip-egg-info-xik_md_e/hatshufflepy.egg-info/PKG-INFO 2025-09-08T12:42:27,460 writing dependency_links to /tmp/pip-pip-egg-info-xik_md_e/hatshufflepy.egg-info/dependency_links.txt 2025-09-08T12:42:27,461 writing requirements to /tmp/pip-pip-egg-info-xik_md_e/hatshufflepy.egg-info/requires.txt 2025-09-08T12:42:27,461 writing top-level names to /tmp/pip-pip-egg-info-xik_md_e/hatshufflepy.egg-info/top_level.txt 2025-09-08T12:42:27,461 writing manifest file '/tmp/pip-pip-egg-info-xik_md_e/hatshufflepy.egg-info/SOURCES.txt' 2025-09-08T12:42:27,607 reading manifest file '/tmp/pip-pip-egg-info-xik_md_e/hatshufflepy.egg-info/SOURCES.txt' 2025-09-08T12:42:27,608 reading manifest template 'MANIFEST.in' 2025-09-08T12:42:27,621 writing manifest file '/tmp/pip-pip-egg-info-xik_md_e/hatshufflepy.egg-info/SOURCES.txt' 2025-09-08T12:42:27,901 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T12:42:27,906 Source in /tmp/pip-wheel-_7ozcvtc/hatshufflepy_8f3895a23df64a199add28122b3f3870 has version 0.0.5, which satisfies requirement hatshufflepy==0.0.5 from https://files.pythonhosted.org/packages/a9/0b/42071a0bef328b560c14eb80ce532ecd63a4178f6f3bec4b5c04eae9af8e/hatshufflepy-0.0.5.tar.gz 2025-09-08T12:42:27,906 Removed hatshufflepy==0.0.5 from https://files.pythonhosted.org/packages/a9/0b/42071a0bef328b560c14eb80ce532ecd63a4178f6f3bec4b5c04eae9af8e/hatshufflepy-0.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-see31g3m' 2025-09-08T12:42:27,909 Created temporary directory: /tmp/pip-unpack-cjd8l513 2025-09-08T12:42:27,909 Created temporary directory: /tmp/pip-unpack-lp62d27j 2025-09-08T12:42:27,910 Building wheels for collected packages: hatshufflepy 2025-09-08T12:42:27,911 Created temporary directory: /tmp/pip-wheel-0majsdz6 2025-09-08T12:42:27,911 DEPRECATION: Building 'hatshufflepy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hatshufflepy'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T12:42:27,913 Building wheel for hatshufflepy (setup.py): started 2025-09-08T12:42:27,914 Destination directory: /tmp/pip-wheel-0majsdz6 2025-09-08T12:42:27,914 Running command python setup.py bdist_wheel 2025-09-08T12:42:28,616 /tmp/pip-wheel-_7ozcvtc/hatshufflepy_8f3895a23df64a199add28122b3f3870 2025-09-08T12:42:29,097 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T12:42:29,097 !! 2025-09-08T12:42:29,097 ******************************************************************************** 2025-09-08T12:42:29,097 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T12:42:29,098 versions. Please use the underscore name 'description_file' instead. 2025-09-08T12:42:29,098 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T12:42:29,098 or your builds will no longer be supported. 2025-09-08T12:42:29,098 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T12:42:29,098 ******************************************************************************** 2025-09-08T12:42:29,098 !! 2025-09-08T12:42:29,098 opt = self._enforce_underscore(opt, section) 2025-09-08T12:42:29,378 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T12:42:29,378 !! 2025-09-08T12:42:29,378 ******************************************************************************** 2025-09-08T12:42:29,378 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T12:42:29,378 versions. Please use the underscore name 'description_file' instead. 2025-09-08T12:42:29,379 (Affected: hatshufflepy). 2025-09-08T12:42:29,379 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T12:42:29,379 or your builds will no longer be supported. 2025-09-08T12:42:29,379 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T12:42:29,379 ******************************************************************************** 2025-09-08T12:42:29,379 !! 2025-09-08T12:42:29,379 opt = self._enforce_underscore(opt, section) 2025-09-08T12:42:29,382 running bdist_wheel 2025-09-08T12:42:29,669 running build 2025-09-08T12:42:29,670 running build_ext 2025-09-08T12:42:29,677 building 'hatshufflepy' extension 2025-09-08T12:42:29,678 creating build/temp.linux-armv7l-cpython-313/hatshufflepy 2025-09-08T12:42:29,679 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ihatshufflepy/libhatshuffle/include/libhatshuffle -Ihatshufflepy/libhatshuffle/include -Ilibhatshuffle/include/libff -I/usr/include/python3.13 -c hatshufflepy/hatshufflepy.cpp -o build/temp.linux-armv7l-cpython-313/hatshufflepy/hatshufflepy.o -std=c++11 -fPIC -shared -w -static -O3 2025-09-08T12:42:43,569 creating build/lib.linux-armv7l-cpython-313 2025-09-08T12:42:43,569 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/hatshufflepy/hatshufflepy.o -L/usr/local/lib -Lhatshufflepy/libhatshuffle/lib -L/usr/lib/arm-linux-gnueabihf -Wl,--enable-new-dtags,-rpath,/tmp/pip-wheel-_7ozcvtc/hatshufflepy_8f3895a23df64a199add28122b3f3870/hatshufflepy/libhatshuffle/lib -Wl,--enable-new-dtags,-rpath,/usr/local/lib/python3.13/dist-packages/hatshufflepy -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages/hatshufflepy -lzm -lff -lhatshuffle -o build/lib.linux-armv7l-cpython-313/hatshufflepy.cpython-313-arm-linux-gnueabihf.so -lgmp -fopenmp -g 2025-09-08T12:42:43,592 hatshufflepy/libhatshuffle/lib/libzm.so: file not recognized: file format not recognized 2025-09-08T12:42:43,594 collect2: error: ld returned 1 exit status 2025-09-08T12:42:43,600 error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1 2025-09-08T12:42:43,743 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T12:42:43,755 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T12:42:43,755 exec(compile('"'"''"'"''"'"' 2025-09-08T12:42:43,755 # This is -- a caller that pip uses to run setup.py 2025-09-08T12:42:43,755 # 2025-09-08T12:42:43,755 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T12:42:43,755 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T12:42:43,755 # - It provides a clear error message when setuptools is not installed. 2025-09-08T12:42:43,755 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T12:42:43,755 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T12:42:43,755 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T12:42:43,755 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T12:42:43,755 import os, sys, tokenize, traceback 2025-09-08T12:42:43,755 2025-09-08T12:42:43,755 try: 2025-09-08T12:42:43,755 import setuptools 2025-09-08T12:42:43,755 except ImportError: 2025-09-08T12:42:43,755 print( 2025-09-08T12:42:43,755 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T12:42:43,755 "the build environment with exception:", 2025-09-08T12:42:43,755 file=sys.stderr, 2025-09-08T12:42:43,755 ) 2025-09-08T12:42:43,755 traceback.print_exc() 2025-09-08T12:42:43,755 sys.exit(1) 2025-09-08T12:42:43,755 2025-09-08T12:42:43,755 __file__ = %r 2025-09-08T12:42:43,755 sys.argv[0] = __file__ 2025-09-08T12:42:43,755 2025-09-08T12:42:43,755 if os.path.exists(__file__): 2025-09-08T12:42:43,755 filename = __file__ 2025-09-08T12:42:43,755 with tokenize.open(__file__) as f: 2025-09-08T12:42:43,755 setup_py_code = f.read() 2025-09-08T12:42:43,755 else: 2025-09-08T12:42:43,755 filename = "" 2025-09-08T12:42:43,755 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T12:42:43,755 2025-09-08T12:42:43,755 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T12:42:43,755 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-_7ozcvtc/hatshufflepy_8f3895a23df64a199add28122b3f3870/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-0majsdz6[/] 2025-09-08T12:42:43,755 [bold magenta]cwd[/]: /tmp/pip-wheel-_7ozcvtc/hatshufflepy_8f3895a23df64a199add28122b3f3870/ 2025-09-08T12:42:43,755 Building wheel for hatshufflepy (setup.py): finished with status 'error' 2025-09-08T12:42:43,756 ERROR: Failed building wheel for hatshufflepy 2025-09-08T12:42:43,757 Running setup.py clean for hatshufflepy 2025-09-08T12:42:43,757 Running command python setup.py clean 2025-09-08T12:42:44,527 /tmp/pip-wheel-_7ozcvtc/hatshufflepy_8f3895a23df64a199add28122b3f3870 2025-09-08T12:42:45,087 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T12:42:45,088 !! 2025-09-08T12:42:45,088 ******************************************************************************** 2025-09-08T12:42:45,088 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T12:42:45,088 versions. Please use the underscore name 'description_file' instead. 2025-09-08T12:42:45,088 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T12:42:45,088 or your builds will no longer be supported. 2025-09-08T12:42:45,089 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T12:42:45,089 ******************************************************************************** 2025-09-08T12:42:45,089 !! 2025-09-08T12:42:45,089 opt = self._enforce_underscore(opt, section) 2025-09-08T12:42:45,380 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-08T12:42:45,380 !! 2025-09-08T12:42:45,380 ******************************************************************************** 2025-09-08T12:42:45,380 Usage of dash-separated 'description-file' will not be supported in future 2025-09-08T12:42:45,380 versions. Please use the underscore name 'description_file' instead. 2025-09-08T12:42:45,381 (Affected: hatshufflepy). 2025-09-08T12:42:45,381 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T12:42:45,381 or your builds will no longer be supported. 2025-09-08T12:42:45,381 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T12:42:45,381 ******************************************************************************** 2025-09-08T12:42:45,381 !! 2025-09-08T12:42:45,381 opt = self._enforce_underscore(opt, section) 2025-09-08T12:42:45,459 running clean 2025-09-08T12:42:45,605 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T12:42:45,606 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T12:42:45,607 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T12:42:45,607 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T12:42:45,607 removing 'build' 2025-09-08T12:42:45,750 Failed to build hatshufflepy 2025-09-08T12:42:45,751 ERROR: Failed to build one or more wheels 2025-09-08T12:42:45,752 Exception information: 2025-09-08T12:42:45,752 Traceback (most recent call last): 2025-09-08T12:42:45,752 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T12:42:45,752 status = _inner_run() 2025-09-08T12:42:45,752 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T12:42:45,752 return self.run(options, args) 2025-09-08T12:42:45,752 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T12:42:45,752 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T12:42:45,752 return func(self, options, args) 2025-09-08T12:42:45,752 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T12:42:45,752 raise CommandError("Failed to build one or more wheels") 2025-09-08T12:42:45,752 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T12:42:45,756 Removed build tracker: '/tmp/pip-build-tracker-see31g3m'