2025-09-08T12:47:03,256 Created temporary directory: /tmp/pip-build-tracker-82png78p
2025-09-08T12:47:03,257 Initialized build tracking at /tmp/pip-build-tracker-82png78p
2025-09-08T12:47:03,257 Created build tracker: /tmp/pip-build-tracker-82png78p
2025-09-08T12:47:03,257 Entered build tracker: /tmp/pip-build-tracker-82png78p
2025-09-08T12:47:03,258 Created temporary directory: /tmp/pip-wheel-sygf890j
2025-09-08T12:47:03,261 Created temporary directory: /tmp/pip-ephem-wheel-cache-2f6_iakd
2025-09-08T12:47:03,323 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T12:47:03,325 2 location(s) to search for versions of pconsc4:
2025-09-08T12:47:03,325 * https://pypi.org/simple/pconsc4/
2025-09-08T12:47:03,325 * https://www.piwheels.org/simple/pconsc4/
2025-09-08T12:47:03,325 Fetching project page and analyzing links: https://pypi.org/simple/pconsc4/
2025-09-08T12:47:03,326 Getting page https://pypi.org/simple/pconsc4/
2025-09-08T12:47:03,327 Found index url https://pypi.org/simple/
2025-09-08T12:47:03,529 Fetched page https://pypi.org/simple/pconsc4/ as application/vnd.pypi.simple.v1+json
2025-09-08T12:47:03,531   Found link https://files.pythonhosted.org/packages/20/d9/3705dae6358e720f7867b6fc35dad5146481b4b25e9613742ea237a7fd62/pconsc4-0.1.tar.gz (from https://pypi.org/simple/pconsc4/), version: 0.1
2025-09-08T12:47:03,531   Found link https://files.pythonhosted.org/packages/d5/f1/643b9c03d316982aeaff1baa50a253ac37977a3d359db5321bfabd10334e/pconsc4-0.4.tar.gz (from https://pypi.org/simple/pconsc4/), version: 0.4
2025-09-08T12:47:03,532 Fetching project page and analyzing links: https://www.piwheels.org/simple/pconsc4/
2025-09-08T12:47:03,533 Getting page https://www.piwheels.org/simple/pconsc4/
2025-09-08T12:47:03,535 Found index url https://www.piwheels.org/simple/
2025-09-08T12:47:03,637 Fetched page https://www.piwheels.org/simple/pconsc4/ as text/html
2025-09-08T12:47:03,640   Skipping link: No binaries permitted for pconsc4: https://archive1.piwheels.org/simple/pconsc4/pconsc4-0.4-cp35-cp35m-linux_armv6l.whl#sha256=6f5d21251b0949d8da3b792c410bc626d722e749f03ce917bdc26eb2b7b483a8 (from https://www.piwheels.org/simple/pconsc4/)
2025-09-08T12:47:03,640   Skipping link: No binaries permitted for pconsc4: https://archive1.piwheels.org/simple/pconsc4/pconsc4-0.4-cp35-cp35m-linux_armv7l.whl#sha256=6f5d21251b0949d8da3b792c410bc626d722e749f03ce917bdc26eb2b7b483a8 (from https://www.piwheels.org/simple/pconsc4/)
2025-09-08T12:47:03,640   Skipping link: No binaries permitted for pconsc4: https://archive1.piwheels.org/simple/pconsc4/pconsc4-0.4-cp37-cp37m-linux_armv7l.whl#sha256=710fa9dc9e42556823a33dec97eef515f946e3fa6289c5d7967757865034f5e8 (from https://www.piwheels.org/simple/pconsc4/)
2025-09-08T12:47:03,640   Skipping link: No binaries permitted for pconsc4: https://archive1.piwheels.org/simple/pconsc4/pconsc4-0.4-cp37-cp37m-linux_armv6l.whl#sha256=710fa9dc9e42556823a33dec97eef515f946e3fa6289c5d7967757865034f5e8 (from https://www.piwheels.org/simple/pconsc4/)
2025-09-08T12:47:03,640   Skipping link: No binaries permitted for pconsc4: https://archive1.piwheels.org/simple/pconsc4/pconsc4-0.1-cp35-cp35m-linux_armv6l.whl#sha256=fd9bc347747e6e960dfea96a05787d18b0f1fe9c730e1da5266e46b714490f04 (from https://www.piwheels.org/simple/pconsc4/)
2025-09-08T12:47:03,641   Skipping link: No binaries permitted for pconsc4: https://archive1.piwheels.org/simple/pconsc4/pconsc4-0.1-cp35-cp35m-linux_armv7l.whl#sha256=fd9bc347747e6e960dfea96a05787d18b0f1fe9c730e1da5266e46b714490f04 (from https://www.piwheels.org/simple/pconsc4/)
2025-09-08T12:47:03,641   Skipping link: No binaries permitted for pconsc4: https://archive1.piwheels.org/simple/pconsc4/pconsc4-0.1-cp37-cp37m-linux_armv7l.whl#sha256=8d3b9a7c8da1943164caa6ee1f5a66dd203b09b16b6f70ebc4ef4e9ba48996ad (from https://www.piwheels.org/simple/pconsc4/)
2025-09-08T12:47:03,641   Skipping link: No binaries permitted for pconsc4: https://archive1.piwheels.org/simple/pconsc4/pconsc4-0.1-cp37-cp37m-linux_armv6l.whl#sha256=8d3b9a7c8da1943164caa6ee1f5a66dd203b09b16b6f70ebc4ef4e9ba48996ad (from https://www.piwheels.org/simple/pconsc4/)
2025-09-08T12:47:03,641 Skipping link: not a file: https://www.piwheels.org/simple/pconsc4/
2025-09-08T12:47:03,641 Skipping link: not a file: https://pypi.org/simple/pconsc4/
2025-09-08T12:47:03,669 Given no hashes to check 1 links for project 'pconsc4': discarding no candidates
2025-09-08T12:47:03,670 Collecting pconsc4==0.1
2025-09-08T12:47:03,671   Created temporary directory: /tmp/pip-unpack-3wa2uv0x
2025-09-08T12:47:03,813   Downloading pconsc4-0.1.tar.gz (271 kB)
2025-09-08T12:47:03,909   Added pconsc4==0.1 from https://files.pythonhosted.org/packages/20/d9/3705dae6358e720f7867b6fc35dad5146481b4b25e9613742ea237a7fd62/pconsc4-0.1.tar.gz to build tracker '/tmp/pip-build-tracker-82png78p'
2025-09-08T12:47:03,910   Running setup.py (path:/tmp/pip-wheel-sygf890j/pconsc4_a7cfe331e8274dd08aa4f04380cd636f/setup.py) egg_info for package pconsc4
2025-09-08T12:47:03,910   Created temporary directory: /tmp/pip-pip-egg-info-ou21ld2u
2025-09-08T12:47:03,911   Preparing metadata (setup.py): started
2025-09-08T12:47:03,911   Running command python setup.py egg_info
2025-09-08T12:47:05,284   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T12:47:05,284   !!

2025-09-08T12:47:05,284           ********************************************************************************
2025-09-08T12:47:05,284           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T12:47:05,285           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T12:47:05,285           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T12:47:05,285           or your builds will no longer be supported.
2025-09-08T12:47:05,285           ********************************************************************************

2025-09-08T12:47:05,285   !!
2025-09-08T12:47:05,285     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T12:47:05,604   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T12:47:05,604   !!

2025-09-08T12:47:05,604           ********************************************************************************
2025-09-08T12:47:05,604           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T12:47:05,604           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2025-09-08T12:47:05,604           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T12:47:05,605           ********************************************************************************

2025-09-08T12:47:05,605   !!
2025-09-08T12:47:05,605     self._finalize_license_expression()
2025-09-08T12:47:05,678   running egg_info
2025-09-08T12:47:05,752   creating /tmp/pip-pip-egg-info-ou21ld2u/pconsc4.egg-info
2025-09-08T12:47:05,753   writing /tmp/pip-pip-egg-info-ou21ld2u/pconsc4.egg-info/PKG-INFO
2025-09-08T12:47:05,754   writing dependency_links to /tmp/pip-pip-egg-info-ou21ld2u/pconsc4.egg-info/dependency_links.txt
2025-09-08T12:47:05,755   writing requirements to /tmp/pip-pip-egg-info-ou21ld2u/pconsc4.egg-info/requires.txt
2025-09-08T12:47:05,755   writing top-level names to /tmp/pip-pip-egg-info-ou21ld2u/pconsc4.egg-info/top_level.txt
2025-09-08T12:47:05,755   writing manifest file '/tmp/pip-pip-egg-info-ou21ld2u/pconsc4.egg-info/SOURCES.txt'
2025-09-08T12:47:06,055   reading manifest file '/tmp/pip-pip-egg-info-ou21ld2u/pconsc4.egg-info/SOURCES.txt'
2025-09-08T12:47:06,055   reading manifest template 'MANIFEST.in'
2025-09-08T12:47:06,061   writing manifest file '/tmp/pip-pip-egg-info-ou21ld2u/pconsc4.egg-info/SOURCES.txt'
2025-09-08T12:47:06,228   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T12:47:06,233   Source in /tmp/pip-wheel-sygf890j/pconsc4_a7cfe331e8274dd08aa4f04380cd636f has version 0.1, which satisfies requirement pconsc4==0.1 from https://files.pythonhosted.org/packages/20/d9/3705dae6358e720f7867b6fc35dad5146481b4b25e9613742ea237a7fd62/pconsc4-0.1.tar.gz
2025-09-08T12:47:06,233   Removed pconsc4==0.1 from https://files.pythonhosted.org/packages/20/d9/3705dae6358e720f7867b6fc35dad5146481b4b25e9613742ea237a7fd62/pconsc4-0.1.tar.gz from build tracker '/tmp/pip-build-tracker-82png78p'
2025-09-08T12:47:06,237 Created temporary directory: /tmp/pip-unpack-85w5slcy
2025-09-08T12:47:06,237 Created temporary directory: /tmp/pip-unpack-9nlkmkzx
2025-09-08T12:47:06,238 Building wheels for collected packages: pconsc4
2025-09-08T12:47:06,239   Created temporary directory: /tmp/pip-wheel-p9jdvo67
2025-09-08T12:47:06,239   DEPRECATION: Building 'pconsc4' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pconsc4'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T12:47:06,240   Building wheel for pconsc4 (setup.py): started
2025-09-08T12:47:06,241   Destination directory: /tmp/pip-wheel-p9jdvo67
2025-09-08T12:47:06,241   Running command python setup.py bdist_wheel
2025-09-08T12:47:07,606   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T12:47:07,606   !!

2025-09-08T12:47:07,607           ********************************************************************************
2025-09-08T12:47:07,607           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T12:47:07,607           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T12:47:07,607           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T12:47:07,607           or your builds will no longer be supported.
2025-09-08T12:47:07,607           ********************************************************************************

2025-09-08T12:47:07,607   !!
2025-09-08T12:47:07,608     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T12:47:07,924   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T12:47:07,924   !!

2025-09-08T12:47:07,924           ********************************************************************************
2025-09-08T12:47:07,924           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T12:47:07,925           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2025-09-08T12:47:07,925           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T12:47:07,925           ********************************************************************************

2025-09-08T12:47:07,925   !!
2025-09-08T12:47:07,925     self._finalize_license_expression()
2025-09-08T12:47:07,926   running bdist_wheel
2025-09-08T12:47:08,293   running build
2025-09-08T12:47:08,294   running build_py
2025-09-08T12:47:08,371   creating build/lib.linux-armv7l-cpython-313/pconsc4
2025-09-08T12:47:08,372   copying pconsc4/__init__.py -> build/lib.linux-armv7l-cpython-313/pconsc4
2025-09-08T12:47:08,372   copying pconsc4/utils.py -> build/lib.linux-armv7l-cpython-313/pconsc4
2025-09-08T12:47:08,373   copying pconsc4/run.py -> build/lib.linux-armv7l-cpython-313/pconsc4
2025-09-08T12:47:08,373   copying pconsc4/create_model.py -> build/lib.linux-armv7l-cpython-313/pconsc4
2025-09-08T12:47:08,374   creating build/lib.linux-armv7l-cpython-313/pconsc4/parsing
2025-09-08T12:47:08,374   copying pconsc4/parsing/__init__.py -> build/lib.linux-armv7l-cpython-313/pconsc4/parsing
2025-09-08T12:47:08,375   copying pconsc4/parsing/parse_contacts.py -> build/lib.linux-armv7l-cpython-313/pconsc4/parsing
2025-09-08T12:47:08,376   copying pconsc4/parsing/parse_fasta.py -> build/lib.linux-armv7l-cpython-313/pconsc4/parsing
2025-09-08T12:47:08,376   copying pconsc4/parsing/parse_pdb.py -> build/lib.linux-armv7l-cpython-313/pconsc4/parsing
2025-09-08T12:47:08,378   running build_ext
2025-09-08T12:47:08,385   building 'pconsc4.parsing._load_data' extension
2025-09-08T12:47:08,386   creating build/temp.linux-armv7l-cpython-313/pconsc4/parsing
2025-09-08T12:47:08,387   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c pconsc4/parsing/_load_data.c -o build/temp.linux-armv7l-cpython-313/pconsc4/parsing/_load_data.o -O2 -march=native -pipe -mtune=native
2025-09-08T12:47:08,753   pconsc4/parsing/_load_data.c:194:12: fatal error: longintrepr.h: No such file or directory
2025-09-08T12:47:08,753     194 |   #include "longintrepr.h"
2025-09-08T12:47:08,753         |            ^~~~~~~~~~~~~~~
2025-09-08T12:47:08,754   compilation terminated.
2025-09-08T12:47:08,759   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2025-09-08T12:47:08,930   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T12:47:08,942   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T12:47:08,942   exec(compile('"'"''"'"''"'"'
2025-09-08T12:47:08,942   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T12:47:08,942   #
2025-09-08T12:47:08,942   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T12:47:08,942   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T12:47:08,942   # - It provides a clear error message when setuptools is not installed.
2025-09-08T12:47:08,942   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T12:47:08,942   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T12:47:08,942   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T12:47:08,942   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T12:47:08,942   import os, sys, tokenize, traceback
2025-09-08T12:47:08,942   
2025-09-08T12:47:08,942   try:
2025-09-08T12:47:08,942       import setuptools
2025-09-08T12:47:08,942   except ImportError:
2025-09-08T12:47:08,942       print(
2025-09-08T12:47:08,942           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T12:47:08,942           "the build environment with exception:",
2025-09-08T12:47:08,942           file=sys.stderr,
2025-09-08T12:47:08,942       )
2025-09-08T12:47:08,942       traceback.print_exc()
2025-09-08T12:47:08,942       sys.exit(1)
2025-09-08T12:47:08,942   
2025-09-08T12:47:08,942   __file__ = %r
2025-09-08T12:47:08,942   sys.argv[0] = __file__
2025-09-08T12:47:08,942   
2025-09-08T12:47:08,942   if os.path.exists(__file__):
2025-09-08T12:47:08,942       filename = __file__
2025-09-08T12:47:08,942       with tokenize.open(__file__) as f:
2025-09-08T12:47:08,942           setup_py_code = f.read()
2025-09-08T12:47:08,942   else:
2025-09-08T12:47:08,942       filename = "<auto-generated setuptools caller>"
2025-09-08T12:47:08,942       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T12:47:08,942   
2025-09-08T12:47:08,942   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T12:47:08,942   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-sygf890j/pconsc4_a7cfe331e8274dd08aa4f04380cd636f/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-p9jdvo67[/]
2025-09-08T12:47:08,942   [bold magenta]cwd[/]: /tmp/pip-wheel-sygf890j/pconsc4_a7cfe331e8274dd08aa4f04380cd636f/
2025-09-08T12:47:08,942   Building wheel for pconsc4 (setup.py): finished with status 'error'
2025-09-08T12:47:08,943   ERROR: Failed building wheel for pconsc4
2025-09-08T12:47:08,943   Running setup.py clean for pconsc4
2025-09-08T12:47:08,944   Running command python setup.py clean
2025-09-08T12:47:10,296   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T12:47:10,297   !!

2025-09-08T12:47:10,297           ********************************************************************************
2025-09-08T12:47:10,297           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T12:47:10,297           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T12:47:10,297           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T12:47:10,297           or your builds will no longer be supported.
2025-09-08T12:47:10,297           ********************************************************************************

2025-09-08T12:47:10,298   !!
2025-09-08T12:47:10,298     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T12:47:10,619   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T12:47:10,619   !!

2025-09-08T12:47:10,619           ********************************************************************************
2025-09-08T12:47:10,620           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T12:47:10,620           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2025-09-08T12:47:10,620           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T12:47:10,620           ********************************************************************************

2025-09-08T12:47:10,620   !!
2025-09-08T12:47:10,620     self._finalize_license_expression()
2025-09-08T12:47:10,696   running clean
2025-09-08T12:47:10,846   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T12:47:10,846   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T12:47:10,847   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T12:47:10,847   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T12:47:10,847   removing 'build'
2025-09-08T12:47:11,015 Failed to build pconsc4
2025-09-08T12:47:11,016 ERROR: Failed to build one or more wheels
2025-09-08T12:47:11,017 Exception information:
2025-09-08T12:47:11,017 Traceback (most recent call last):
2025-09-08T12:47:11,017   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T12:47:11,017     status = _inner_run()
2025-09-08T12:47:11,017   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T12:47:11,017     return self.run(options, args)
2025-09-08T12:47:11,017            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T12:47:11,017   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T12:47:11,017     return func(self, options, args)
2025-09-08T12:47:11,017   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T12:47:11,017     raise CommandError("Failed to build one or more wheels")
2025-09-08T12:47:11,017 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T12:47:11,021 Removed build tracker: '/tmp/pip-build-tracker-82png78p'