2025-09-08T13:39:28,841 Created temporary directory: /tmp/pip-build-tracker-28d2gnfj
2025-09-08T13:39:28,842 Initialized build tracking at /tmp/pip-build-tracker-28d2gnfj
2025-09-08T13:39:28,842 Created build tracker: /tmp/pip-build-tracker-28d2gnfj
2025-09-08T13:39:28,842 Entered build tracker: /tmp/pip-build-tracker-28d2gnfj
2025-09-08T13:39:28,843 Created temporary directory: /tmp/pip-wheel-3sprg39h
2025-09-08T13:39:28,846 Created temporary directory: /tmp/pip-ephem-wheel-cache-zkg5gpnk
2025-09-08T13:39:28,906 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T13:39:28,908 2 location(s) to search for versions of camoco:
2025-09-08T13:39:28,908 * https://pypi.org/simple/camoco/
2025-09-08T13:39:28,908 * https://www.piwheels.org/simple/camoco/
2025-09-08T13:39:28,908 Fetching project page and analyzing links: https://pypi.org/simple/camoco/
2025-09-08T13:39:28,909 Getting page https://pypi.org/simple/camoco/
2025-09-08T13:39:28,910 Found index url https://pypi.org/simple/
2025-09-08T13:39:28,981 Fetched page https://pypi.org/simple/camoco/ as application/vnd.pypi.simple.v1+json
2025-09-08T13:39:28,983   Found link https://files.pythonhosted.org/packages/43/41/d0d81fb45e70fbeb4eecd8a45e1cf580cd00221f41110291c9d81431051f/camoco-0.1.0.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.0
2025-09-08T13:39:28,983   Found link https://files.pythonhosted.org/packages/ac/2a/a2d57a86796705e676e89ba06ac5ca9d6031f8257d3d191fe1b62cb3e027/camoco-0.1.1.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.1
2025-09-08T13:39:28,984   Found link https://files.pythonhosted.org/packages/36/76/4ead6259156a34138d5a1470a6fffe90bf84060ecbf6ba24d35ff6444556/camoco-0.1.2.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.2
2025-09-08T13:39:28,984   Found link https://files.pythonhosted.org/packages/b8/39/ef06f826443955669d6b53c265239e080a7d419ab14e479fb2f0dc30e3a0/camoco-0.1.3.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.3
2025-09-08T13:39:28,984   Found link https://files.pythonhosted.org/packages/2f/89/053c4d7d7e219d10a8f79a57f55b054e3d2072597332a06dbc62f567ee59/camoco-0.1.4.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.4
2025-09-08T13:39:28,984   Found link https://files.pythonhosted.org/packages/1b/b1/231f9627750ca9cabee0762a3682cc2bb3f30650f6a8232d8e3af32a3823/camoco-0.1.5.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.5
2025-09-08T13:39:28,985   Found link https://files.pythonhosted.org/packages/fa/6e/370a6eff0d3fb9ff43b0ea5899a393ccca0773a5d0ced60193672a08ca9d/camoco-0.1.6.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.6
2025-09-08T13:39:28,985   Found link https://files.pythonhosted.org/packages/cb/99/3aeb19604c709bafd7be0564423b6d56ec9dbb608f9ec763b58faedf361c/camoco-0.1.7.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.7
2025-09-08T13:39:28,985   Found link https://files.pythonhosted.org/packages/86/b9/74946b1d3f0214e451528e29131ca23b99bbe78720b9981638d20838bfeb/camoco-0.1.8.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.8
2025-09-08T13:39:28,985   Found link https://files.pythonhosted.org/packages/52/a8/a249e717bcc0e09f6adfad9d9aefe49f58a611730cb5002c13ef8fa7ef55/camoco-0.6.0.tar.gz (from https://pypi.org/simple/camoco/), version: 0.6.0
2025-09-08T13:39:28,986   Found link https://files.pythonhosted.org/packages/89/1f/b09a750aad7666bc593123781cc284d610df777a4360f6f1bd8fb0d7ff27/camoco-0.6.1.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6), version: 0.6.1
2025-09-08T13:39:28,986   Found link https://files.pythonhosted.org/packages/93/58/a1a019531c166ea0c32326ff0cbb6e2c29b8b9550b3b52215facac02e214/camoco-0.6.2.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6), version: 0.6.2
2025-09-08T13:39:28,987   Link requires a different Python (3.13.5 not in: '>=3.6, <3.7'): https://files.pythonhosted.org/packages/23/0e/3616fbe340618546b8ddab8711e9f1442c2a9ff2ec315eb1cc9afd6d2123/camoco-0.6.3.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6, <3.7)
2025-09-08T13:39:28,987   Skipping link: 0.6.3 Requires-Python >=3.6, <3.7: https://files.pythonhosted.org/packages/23/0e/3616fbe340618546b8ddab8711e9f1442c2a9ff2ec315eb1cc9afd6d2123/camoco-0.6.3.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6, <3.7)
2025-09-08T13:39:28,988   Link requires a different Python (3.13.5 not in: '>=3.6,<3.8'): https://files.pythonhosted.org/packages/d6/cf/de367502c08f3d8e0573d22627ce777a358353beba4747adf88b06bf3eb6/camoco-0.6.4.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6,<3.8)
2025-09-08T13:39:28,988   Skipping link: 0.6.4 Requires-Python >=3.6,<3.8: https://files.pythonhosted.org/packages/d6/cf/de367502c08f3d8e0573d22627ce777a358353beba4747adf88b06bf3eb6/camoco-0.6.4.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6,<3.8)
2025-09-08T13:39:28,988 Fetching project page and analyzing links: https://www.piwheels.org/simple/camoco/
2025-09-08T13:39:28,989 Getting page https://www.piwheels.org/simple/camoco/
2025-09-08T13:39:28,989 Found index url https://www.piwheels.org/simple/
2025-09-08T13:39:29,083 Fetched page https://www.piwheels.org/simple/camoco/ as text/html
2025-09-08T13:39:29,088   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.4-cp37-cp37m-linux_armv7l.whl#sha256=d0d0b425ed77e32a1170ae0f22bac78b5de2f610153004b71eaf2989f854fdab (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6,<3.8)
2025-09-08T13:39:29,089   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.4-cp37-cp37m-linux_armv6l.whl#sha256=d0d0b425ed77e32a1170ae0f22bac78b5de2f610153004b71eaf2989f854fdab (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6,<3.8)
2025-09-08T13:39:29,089   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp39-cp39-linux_armv6l.whl#sha256=ff1d8441751a2549de7aa0d0368f745f8c63fba7d2d7366dd4e73b665253d8f3 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T13:39:29,089   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp39-cp39-linux_armv7l.whl#sha256=ff1d8441751a2549de7aa0d0368f745f8c63fba7d2d7366dd4e73b665253d8f3 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T13:39:29,089   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp37-cp37m-linux_armv7l.whl#sha256=cfb087c1c8e4b1a4331967280b52f41407b3415dfc5bf26752e2afb94625aa01 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T13:39:29,089   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp37-cp37m-linux_armv6l.whl#sha256=cfb087c1c8e4b1a4331967280b52f41407b3415dfc5bf26752e2afb94625aa01 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T13:39:29,089   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=31da9a10bb2a019a258661a6d451e7fe7ccd0b23a600e420fa48b04f7ff7fb6e (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T13:39:29,089   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=31da9a10bb2a019a258661a6d451e7fe7ccd0b23a600e420fa48b04f7ff7fb6e (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T13:39:29,090   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=22f1d9fe682376c5496dd25093fc5301da2bcbed873914817bed44c851833935 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T13:39:29,090   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp37-cp37m-linux_armv6l.whl#sha256=22f1d9fe682376c5496dd25093fc5301da2bcbed873914817bed44c851833935 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T13:39:29,090   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=4bdafca9724ecc4955293e68bfabb83823855cd749021d49fb3f5067ce7d9228 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,090   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=4bdafca9724ecc4955293e68bfabb83823855cd749021d49fb3f5067ce7d9228 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,090   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=a26297be87d3fdc3fb8b04f6fb1efce22ff4ec448a71ffe1ea1777fbde91c38d (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,090   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=a26297be87d3fdc3fb8b04f6fb1efce22ff4ec448a71ffe1ea1777fbde91c38d (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,090   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp34-cp34m-linux_armv7l.whl#sha256=bd39032f6e2c4ad36305d2d15a002b9dfff2fa354c328011223157c158d2fc27 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,090   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp34-cp34m-linux_armv6l.whl#sha256=bd39032f6e2c4ad36305d2d15a002b9dfff2fa354c328011223157c158d2fc27 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,091   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp35-cp35m-linux_armv7l.whl#sha256=a21020956af128edb2dfe8f85c414242506215eca23728524734a2dbbc10e88b (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,091   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp35-cp35m-linux_armv6l.whl#sha256=a21020956af128edb2dfe8f85c414242506215eca23728524734a2dbbc10e88b (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,091   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.8-py3-none-any.whl#sha256=5967431750ad7d2a4e19fc2ef9be96146bd3528e08a55132b291e71c530a56a0 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,091   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.5-py3-none-any.whl#sha256=7d45165eef62a61d02b83b93c1dc453b4b19759fe246c5eb94d77a9a83da92bc (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,091   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.4-py3-none-any.whl#sha256=7b5981f5bb8d5863c7117c0f7b548062cd5298639a75db798e0dc947246d6a8f (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,091   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.3-py3-none-any.whl#sha256=9c6a8449c0225d9fda2378d3c0cffd7006eadc3df56d5fa2137dbd8359214b11 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,092   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.2-py3-none-any.whl#sha256=47efa56feee029688bcf6052bdcef369d49122b13433f0f697b995c1f3297ad1 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,092   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.1-py3-none-any.whl#sha256=86d86983f412f451a7bf2012297bd7671faf368a068fa95bc051211a8d575b37 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,092   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.0-py3-none-any.whl#sha256=ce68a7c5d9fb6c86b28f5c15eabe5ef3aacfdfba82e414b351efd1f0dab45621 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T13:39:29,092 Skipping link: not a file: https://www.piwheels.org/simple/camoco/
2025-09-08T13:39:29,092 Skipping link: not a file: https://pypi.org/simple/camoco/
2025-09-08T13:39:29,119 Given no hashes to check 1 links for project 'camoco': discarding no candidates
2025-09-08T13:39:29,120 Collecting camoco==0.6.0
2025-09-08T13:39:29,121   Created temporary directory: /tmp/pip-unpack-g5f7e8el
2025-09-08T13:39:29,259   Downloading camoco-0.6.0.tar.gz (100 kB)
2025-09-08T13:39:29,324   Added camoco==0.6.0 from https://files.pythonhosted.org/packages/52/a8/a249e717bcc0e09f6adfad9d9aefe49f58a611730cb5002c13ef8fa7ef55/camoco-0.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-28d2gnfj'
2025-09-08T13:39:29,325   Running setup.py (path:/tmp/pip-wheel-3sprg39h/camoco_cc9ea9c0df254ae5ae21e1fbc097c047/setup.py) egg_info for package camoco
2025-09-08T13:39:29,325   Created temporary directory: /tmp/pip-pip-egg-info-32oxdo9v
2025-09-08T13:39:29,325   Preparing metadata (setup.py): started
2025-09-08T13:39:29,326   Running command python setup.py egg_info
2025-09-08T13:39:30,390   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T13:39:30,390   !!

2025-09-08T13:39:30,391           ********************************************************************************
2025-09-08T13:39:30,391           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T13:39:30,391           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T13:39:30,391           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T13:39:30,391           or your builds will no longer be supported.
2025-09-08T13:39:30,391           ********************************************************************************

2025-09-08T13:39:30,391   !!
2025-09-08T13:39:30,391     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T13:39:31,014   running egg_info
2025-09-08T13:39:31,087   creating /tmp/pip-pip-egg-info-32oxdo9v/camoco.egg-info
2025-09-08T13:39:31,088   writing /tmp/pip-pip-egg-info-32oxdo9v/camoco.egg-info/PKG-INFO
2025-09-08T13:39:31,089   writing dependency_links to /tmp/pip-pip-egg-info-32oxdo9v/camoco.egg-info/dependency_links.txt
2025-09-08T13:39:31,090   writing requirements to /tmp/pip-pip-egg-info-32oxdo9v/camoco.egg-info/requires.txt
2025-09-08T13:39:31,090   writing top-level names to /tmp/pip-pip-egg-info-32oxdo9v/camoco.egg-info/top_level.txt
2025-09-08T13:39:31,091   writing manifest file '/tmp/pip-pip-egg-info-32oxdo9v/camoco.egg-info/SOURCES.txt'
2025-09-08T13:39:31,470   reading manifest file '/tmp/pip-pip-egg-info-32oxdo9v/camoco.egg-info/SOURCES.txt'
2025-09-08T13:39:31,473   writing manifest file '/tmp/pip-pip-egg-info-32oxdo9v/camoco.egg-info/SOURCES.txt'
2025-09-08T13:39:31,609   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T13:39:31,614   Source in /tmp/pip-wheel-3sprg39h/camoco_cc9ea9c0df254ae5ae21e1fbc097c047 has version 0.6.0, which satisfies requirement camoco==0.6.0 from https://files.pythonhosted.org/packages/52/a8/a249e717bcc0e09f6adfad9d9aefe49f58a611730cb5002c13ef8fa7ef55/camoco-0.6.0.tar.gz
2025-09-08T13:39:31,614   Removed camoco==0.6.0 from https://files.pythonhosted.org/packages/52/a8/a249e717bcc0e09f6adfad9d9aefe49f58a611730cb5002c13ef8fa7ef55/camoco-0.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-28d2gnfj'
2025-09-08T13:39:31,621 Created temporary directory: /tmp/pip-unpack-b8byj380
2025-09-08T13:39:31,622 Created temporary directory: /tmp/pip-unpack-6e42dsvq
2025-09-08T13:39:31,622 Building wheels for collected packages: camoco
2025-09-08T13:39:31,623   Created temporary directory: /tmp/pip-wheel-wni8_h1e
2025-09-08T13:39:31,624   DEPRECATION: Building 'camoco' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'camoco'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T13:39:31,625   Building wheel for camoco (setup.py): started
2025-09-08T13:39:31,626   Destination directory: /tmp/pip-wheel-wni8_h1e
2025-09-08T13:39:31,626   Running command python setup.py bdist_wheel
2025-09-08T13:39:32,452   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T13:39:32,452   !!

2025-09-08T13:39:32,453           ********************************************************************************
2025-09-08T13:39:32,453           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T13:39:32,453           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T13:39:32,453           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T13:39:32,453           or your builds will no longer be supported.
2025-09-08T13:39:32,453           ********************************************************************************

2025-09-08T13:39:32,453   !!
2025-09-08T13:39:32,454     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T13:39:33,001   running bdist_wheel
2025-09-08T13:39:33,371   running build
2025-09-08T13:39:33,371   running build_py
2025-09-08T13:39:33,447   creating build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,448   copying camoco/__init__.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,448   copying camoco/Tools.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,449   copying camoco/Term.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,449   copying camoco/SimulationAnalysis.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,450   copying camoco/RefGen.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,451   copying camoco/Overlap.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,451   copying camoco/Ontology.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,452   copying camoco/MapOnt.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,453   copying camoco/Locus.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,453   copying camoco/Genome.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,454   copying camoco/GWAS.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,454   copying camoco/GOnt.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,455   copying camoco/GEO.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,455   copying camoco/Expr.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,456   copying camoco/Exceptions.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,456   copying camoco/Config.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,457   copying camoco/Chrom.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,457   copying camoco/Camoco.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,458   copying camoco/COB.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,459   creating build/lib.linux-armv7l-cpython-313/camoco/cli
2025-09-08T13:39:33,459   copying camoco/cli/__init__.py -> build/lib.linux-armv7l-cpython-313/camoco/cli
2025-09-08T13:39:33,460   creating build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,460   copying camoco/cli/commands/snp2gene.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,461   copying camoco/cli/commands/simulateGWAS.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,462   copying camoco/cli/commands/remove.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,462   copying camoco/cli/commands/plotGWAS.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,463   copying camoco/cli/commands/locality.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,463   copying camoco/cli/commands/list.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,464   copying camoco/cli/commands/health.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,464   copying camoco/cli/commands/geneneighbors.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,465   copying camoco/cli/commands/crossRef.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,465   copying camoco/cli/commands/cistrans.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,466   copying camoco/cli/commands/build.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,466   copying camoco/cli/commands/__init__.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,467   copying camoco/cli/commands/Analysis.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T13:39:33,467   running egg_info
2025-09-08T13:39:33,539   writing camoco.egg-info/PKG-INFO
2025-09-08T13:39:33,541   writing dependency_links to camoco.egg-info/dependency_links.txt
2025-09-08T13:39:33,542   writing requirements to camoco.egg-info/requires.txt
2025-09-08T13:39:33,542   writing top-level names to camoco.egg-info/top_level.txt
2025-09-08T13:39:33,619   reading manifest file 'camoco.egg-info/SOURCES.txt'
2025-09-08T13:39:33,625   writing manifest file 'camoco.egg-info/SOURCES.txt'
2025-09-08T13:39:33,628   copying camoco/PCCUP.pyx -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,628   copying camoco/RefGenDist.pyx -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:33,629   copying camoco/cli/camoco -> build/lib.linux-armv7l-cpython-313/camoco/cli
2025-09-08T13:39:33,630   running build_ext
2025-09-08T13:39:34,073   Compiling camoco/PCCUP.pyx because it changed.
2025-09-08T13:39:34,073   [1/1] Cythonizing camoco/PCCUP.pyx
2025-09-08T13:39:37,490   building 'camoco.PCCUP' extension
2025-09-08T13:39:37,491   creating build/temp.linux-armv7l-cpython-313/camoco
2025-09-08T13:39:37,491   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c camoco/PCCUP.c -o build/temp.linux-armv7l-cpython-313/camoco/PCCUP.o
2025-09-08T13:39:58,224   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/camoco/PCCUP.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/camoco/PCCUP.cpython-313-arm-linux-gnueabihf.so
2025-09-08T13:39:58,368   Compiling camoco/RefGenDist.pyx because it changed.
2025-09-08T13:39:58,368   [1/1] Cythonizing camoco/RefGenDist.pyx
2025-09-08T13:39:59,889   building 'camoco.RefGenDist' extension
2025-09-08T13:39:59,890   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c camoco/RefGenDist.c -o build/temp.linux-armv7l-cpython-313/camoco/RefGenDist.o
2025-09-08T13:40:18,375   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/camoco/RefGenDist.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/camoco/RefGenDist.cpython-313-arm-linux-gnueabihf.so
2025-09-08T13:40:18,511   running build_scripts
2025-09-08T13:40:18,512   creating build/scripts-3.13
2025-09-08T13:40:18,512   copying and adjusting camoco/cli/camoco -> build/scripts-3.13
2025-09-08T13:40:18,513   changing mode of build/scripts-3.13/camoco from 644 to 755
2025-09-08T13:40:18,656   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T13:40:18,656   !!

2025-09-08T13:40:18,656           ********************************************************************************
2025-09-08T13:40:18,656           Please avoid running ``setup.py`` directly.
2025-09-08T13:40:18,656           Instead, use pypa/build, pypa/installer or other
2025-09-08T13:40:18,657           standards-based tools.

2025-09-08T13:40:18,657           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T13:40:18,657           or your builds will no longer be supported.

2025-09-08T13:40:18,657           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T13:40:18,657           ********************************************************************************

2025-09-08T13:40:18,657   !!
2025-09-08T13:40:18,658     self.initialize_options()
2025-09-08T13:40:18,733   installing to build/bdist.linux-armv7l/wheel
2025-09-08T13:40:18,733   running install
2025-09-08T13:40:18,756   running install_lib
2025-09-08T13:40:18,829   creating build/bdist.linux-armv7l/wheel
2025-09-08T13:40:18,830   creating build/bdist.linux-armv7l/wheel/camoco
2025-09-08T13:40:18,830   copying build/lib.linux-armv7l-cpython-313/camoco/RefGenDist.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,834   copying build/lib.linux-armv7l-cpython-313/camoco/PCCUP.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,838   copying build/lib.linux-armv7l-cpython-313/camoco/RefGenDist.pyx -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,838   copying build/lib.linux-armv7l-cpython-313/camoco/PCCUP.pyx -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,839   creating build/bdist.linux-armv7l/wheel/camoco/cli
2025-09-08T13:40:18,839   copying build/lib.linux-armv7l-cpython-313/camoco/cli/camoco -> build/bdist.linux-armv7l/wheel/./camoco/cli
2025-09-08T13:40:18,840   creating build/bdist.linux-armv7l/wheel/camoco/cli/commands
2025-09-08T13:40:18,840   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/Analysis.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,841   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,841   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/build.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,842   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/cistrans.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,842   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/crossRef.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,842   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/geneneighbors.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,843   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/health.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,843   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/list.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,844   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/locality.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,844   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/plotGWAS.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,844   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/remove.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,845   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/simulateGWAS.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,845   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/snp2gene.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T13:40:18,845   copying build/lib.linux-armv7l-cpython-313/camoco/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./camoco/cli
2025-09-08T13:40:18,846   copying build/lib.linux-armv7l-cpython-313/camoco/COB.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,847   copying build/lib.linux-armv7l-cpython-313/camoco/Camoco.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,847   copying build/lib.linux-armv7l-cpython-313/camoco/Chrom.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,847   copying build/lib.linux-armv7l-cpython-313/camoco/Config.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,848   copying build/lib.linux-armv7l-cpython-313/camoco/Exceptions.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,848   copying build/lib.linux-armv7l-cpython-313/camoco/Expr.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,849   copying build/lib.linux-armv7l-cpython-313/camoco/GEO.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,849   copying build/lib.linux-armv7l-cpython-313/camoco/GOnt.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,849   copying build/lib.linux-armv7l-cpython-313/camoco/GWAS.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,850   copying build/lib.linux-armv7l-cpython-313/camoco/Genome.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,850   copying build/lib.linux-armv7l-cpython-313/camoco/Locus.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,850   copying build/lib.linux-armv7l-cpython-313/camoco/MapOnt.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,851   copying build/lib.linux-armv7l-cpython-313/camoco/Ontology.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,851   copying build/lib.linux-armv7l-cpython-313/camoco/Overlap.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,852   copying build/lib.linux-armv7l-cpython-313/camoco/RefGen.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,852   copying build/lib.linux-armv7l-cpython-313/camoco/SimulationAnalysis.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,853   copying build/lib.linux-armv7l-cpython-313/camoco/Term.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,853   copying build/lib.linux-armv7l-cpython-313/camoco/Tools.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,854   copying build/lib.linux-armv7l-cpython-313/camoco/__init__.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T13:40:18,854   running install_egg_info
2025-09-08T13:40:18,931   Copying camoco.egg-info to build/bdist.linux-armv7l/wheel/./camoco-0.6.0-py3.13.egg-info
2025-09-08T13:40:18,933   running install_scripts
2025-09-08T13:40:18,933   creating build/bdist.linux-armv7l/wheel/camoco-0.6.0.data/scripts
2025-09-08T13:40:18,934   copying build/scripts-3.13/camoco -> build/bdist.linux-armv7l/wheel/camoco-0.6.0.data/scripts
2025-09-08T13:40:18,934   changing mode of build/bdist.linux-armv7l/wheel/camoco-0.6.0.data/scripts/camoco to 755
2025-09-08T13:40:18,986   creating build/bdist.linux-armv7l/wheel/camoco-0.6.0.dist-info/WHEEL
2025-09-08T13:40:18,987   creating '/tmp/pip-wheel-wni8_h1e/camoco-0.6.0-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-08T13:40:18,996   adding 'camoco/COB.py'
2025-09-08T13:40:18,997   adding 'camoco/Camoco.py'
2025-09-08T13:40:18,998   adding 'camoco/Chrom.py'
2025-09-08T13:40:18,999   adding 'camoco/Config.py'
2025-09-08T13:40:18,999   adding 'camoco/Exceptions.py'
2025-09-08T13:40:19,003   adding 'camoco/Expr.py'
2025-09-08T13:40:19,005   adding 'camoco/GEO.py'
2025-09-08T13:40:19,007   adding 'camoco/GOnt.py'
2025-09-08T13:40:19,008   adding 'camoco/GWAS.py'
2025-09-08T13:40:19,009   adding 'camoco/Genome.py'
2025-09-08T13:40:19,010   adding 'camoco/Locus.py'
2025-09-08T13:40:19,011   adding 'camoco/MapOnt.py'
2025-09-08T13:40:19,013   adding 'camoco/Ontology.py'
2025-09-08T13:40:19,016   adding 'camoco/Overlap.py'
2025-09-08T13:40:19,230   adding 'camoco/PCCUP.cpython-313-arm-linux-gnueabihf.so'
2025-09-08T13:40:19,238   adding 'camoco/PCCUP.pyx'
2025-09-08T13:40:19,242   adding 'camoco/RefGen.py'
2025-09-08T13:40:19,440   adding 'camoco/RefGenDist.cpython-313-arm-linux-gnueabihf.so'
2025-09-08T13:40:19,446   adding 'camoco/RefGenDist.pyx'
2025-09-08T13:40:19,448   adding 'camoco/SimulationAnalysis.py'
2025-09-08T13:40:19,449   adding 'camoco/Term.py'
2025-09-08T13:40:19,450   adding 'camoco/Tools.py'
2025-09-08T13:40:19,451   adding 'camoco/__init__.py'
2025-09-08T13:40:19,452   adding 'camoco/cli/__init__.py'
2025-09-08T13:40:19,455   adding 'camoco/cli/camoco'
2025-09-08T13:40:19,456   adding 'camoco/cli/commands/Analysis.py'
2025-09-08T13:40:19,456   adding 'camoco/cli/commands/__init__.py'
2025-09-08T13:40:19,457   adding 'camoco/cli/commands/build.py'
2025-09-08T13:40:19,458   adding 'camoco/cli/commands/cistrans.py'
2025-09-08T13:40:19,458   adding 'camoco/cli/commands/crossRef.py'
2025-09-08T13:40:19,459   adding 'camoco/cli/commands/geneneighbors.py'
2025-09-08T13:40:19,461   adding 'camoco/cli/commands/health.py'
2025-09-08T13:40:19,461   adding 'camoco/cli/commands/list.py'
2025-09-08T13:40:19,462   adding 'camoco/cli/commands/locality.py'
2025-09-08T13:40:19,463   adding 'camoco/cli/commands/plotGWAS.py'
2025-09-08T13:40:19,464   adding 'camoco/cli/commands/remove.py'
2025-09-08T13:40:19,465   adding 'camoco/cli/commands/simulateGWAS.py'
2025-09-08T13:40:19,466   adding 'camoco/cli/commands/snp2gene.py'
2025-09-08T13:40:19,469   adding 'camoco-0.6.0.data/scripts/camoco'
2025-09-08T13:40:19,470   adding 'camoco-0.6.0.dist-info/METADATA'
2025-09-08T13:40:19,471   adding 'camoco-0.6.0.dist-info/WHEEL'
2025-09-08T13:40:19,471   adding 'camoco-0.6.0.dist-info/top_level.txt'
2025-09-08T13:40:19,472   adding 'camoco-0.6.0.dist-info/RECORD'
2025-09-08T13:40:19,473   removing build/bdist.linux-armv7l/wheel
2025-09-08T13:40:20,117   Building wheel for camoco (setup.py): finished with status 'done'
2025-09-08T13:40:20,128   Created wheel for camoco: filename=camoco-0.6.0-cp313-cp313-linux_armv7l.whl size=907529 sha256=4b0e87b52dcbc3a3fde80865045449d2efb291bb893528ae8650279816dc1a24
2025-09-08T13:40:20,129   Stored in directory: /tmp/pip-ephem-wheel-cache-zkg5gpnk/wheels/01/79/3e/6f5e6f03bbd746a3795a7c50e1ba26d2fa80f34cd8e2430fa2
2025-09-08T13:40:20,139 Successfully built camoco
2025-09-08T13:40:20,142 Removed build tracker: '/tmp/pip-build-tracker-28d2gnfj'