2025-09-08T13:46:40,855 Created temporary directory: /tmp/pip-build-tracker-02jbo5xm 2025-09-08T13:46:40,856 Initialized build tracking at /tmp/pip-build-tracker-02jbo5xm 2025-09-08T13:46:40,856 Created build tracker: /tmp/pip-build-tracker-02jbo5xm 2025-09-08T13:46:40,856 Entered build tracker: /tmp/pip-build-tracker-02jbo5xm 2025-09-08T13:46:40,856 Created temporary directory: /tmp/pip-wheel-0xekvlyo 2025-09-08T13:46:40,859 Created temporary directory: /tmp/pip-ephem-wheel-cache-njcub8_p 2025-09-08T13:46:40,916 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T13:46:40,918 2 location(s) to search for versions of scikit-bio: 2025-09-08T13:46:40,918 * https://pypi.org/simple/scikit-bio/ 2025-09-08T13:46:40,918 * https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T13:46:40,918 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2025-09-08T13:46:40,919 Getting page https://pypi.org/simple/scikit-bio/ 2025-09-08T13:46:40,920 Found index url https://pypi.org/simple/ 2025-09-08T13:46:40,990 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2025-09-08T13:46:40,997 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2025-09-08T13:46:40,997 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2025-09-08T13:46:40,997 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2025-09-08T13:46:40,997 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2025-09-08T13:46:40,998 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2025-09-08T13:46:40,998 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2025-09-08T13:46:40,998 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2025-09-08T13:46:40,998 Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.1 2025-09-08T13:46:40,999 Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.2 2025-09-08T13:46:40,999 Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.3 2025-09-08T13:46:40,999 Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.0 2025-09-08T13:46:40,999 Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.1 2025-09-08T13:46:41,000 Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.2 2025-09-08T13:46:41,000 Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip (from https://pypi.org/simple/scikit-bio/), version: 0.5.0 2025-09-08T13:46:41,000 Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.1 2025-09-08T13:46:41,000 Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2025-09-08T13:46:41,000 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2025-09-08T13:46:41,001 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2025-09-08T13:46:41,001 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2025-09-08T13:46:41,001 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2025-09-08T13:46:41,001 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2025-09-08T13:46:41,002 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2025-09-08T13:46:41,002 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2025-09-08T13:46:41,002 Found link https://files.pythonhosted.org/packages/9d/77/531cf69c99cb398c5abf8545259b88ee256bfdb72e5972bcfdbcb9942751/scikit-bio-0.6.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.0 2025-09-08T13:46:41,002 Found link https://files.pythonhosted.org/packages/12/6b/1a01f3df88503d9a11916972f0b0c2aed13d516f159336b4bdcfcd04098a/scikit-bio-0.6.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.1 2025-09-08T13:46:41,002 Found link https://files.pythonhosted.org/packages/29/28/07326aa931c67d491d3053e2875b6c8f2904e661d9ab7c2840c3ae6b3780/scikit-bio-0.6.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.2 2025-09-08T13:46:41,003 Found link https://files.pythonhosted.org/packages/65/59/31e499edc0d045acab799b7117130e9c9de22371be57ac311f2f0b235dc4/scikit-bio-0.6.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.3 2025-09-08T13:46:41,003 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/59/8b/f90ee0325c7f59573bdf8d4a5a5717ca710f067a081fd46f3768600a200d/scikit_bio-0.7.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,003 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/57/c6/0864476e63935459eb4d474f210e70ca1b0aa9689bb1beccbeae582587ce/scikit_bio-0.7.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,003 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/ca/087675f3fd6608142be8c53e6875a1a730e0fa1250a85421677570445839/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,003 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c8/69/da203001d9a0d4f2dc14426617e5eed76c9ff059f6c2a94023bf48e204cb/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,003 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/45/97/3b928b1f075a6033326244e125f0e3a518fe75c17278359d1835ca4ccb24/scikit_bio-0.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,004 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3d/66/5f238ff8fa25080d5baf82287297bfd1e6dbeab45ef3ff1b0f6e1a7c017e/scikit_bio-0.7.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,004 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f9/8b/8ef6e40a818067bdaf57fa779eadbc8ef73f333dbd50fb09daeae13de1f2/scikit_bio-0.7.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,004 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f0/66/6cb6e9ba1e67f65a27b34fcd33b457cb0fea73f93dc184ea1bf38562f012/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,004 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/27/e359f131018cf988f1e4f5e7380db7db43ba4202ffc9ba9e8f6cfb1988f5/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,004 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/db/99/6b0ce81f81e2cfe06c899455b149e7f8393cd3ba9a8905efe18c36894420/scikit_bio-0.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,004 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/43/9b/bf339d439568a4fa0ab6e7e545c4487b1cf86e6245f98be0d922f4677ddc/scikit_bio-0.7.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,004 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1d/e9/7a5dd2e04bbd361907f5a1942fa4b6aeecfa453801f4c047c55b51036df2/scikit_bio-0.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,005 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/19/4b/b63123cf09c3375fa90cbfc02febf32cc20429a49c03d71f37febed7c52d/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,005 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f5/02/b178ca48305a230e080732dd02233e0824b1a9b41b273acf2444de116be2/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,005 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/5f/a8/199cafe05bb77bf274f0a3db8f5199f4b2966db37589f9e5ec6a212c0b9c/scikit_bio-0.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,005 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d4/31/b943fcf7d4579b4751002ad9a48e62e9f0c7db542dd440f7e3e82f50f58b/scikit_bio-0.7.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,005 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e7/af/5f3452f0dce0f0a3c7ccb9f067e410b50a8d188c4fb56426f8785317333d/scikit_bio-0.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,005 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7d/20/ef1d2a8accb946cc31b5b987a46d197f69d1e89bab76b5e9cb4235a355f9/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,005 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1c/46/3f05eedb58e13c21f5ab7496e9735da2f008aa66038b268ea46138a3e48d/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,006 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/40/e9/2f7d72ef933e9328b929295ada98ad2c5fbdc5b3c6bd2f4d886f14d4f90a/scikit_bio-0.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,006 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b5/fa/3a7770c445111c6b957aba701887f22506faef8145965a6b9d2816cfd896/scikit_bio-0.7.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,006 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4e/07/e2a29ccbb31208c98ff2c7b61b00614885f781474891ebf249d85495e238/scikit_bio-0.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,006 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/89/15/829f7da8e5083f4d2e3dd1ef24faa6b32da2bf492547bd6d385e92fda127/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,006 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4a/34/687f9e4dc73e39a56277e2aa900577fccb3c99ef28a5acc5fc258028e2ac/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,006 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6c/a5/75fd40c8bf70836216fffe57bdd80c78959d5cc21c23927ada892b246f3d/scikit_bio-0.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T13:46:41,007 Found link https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9), version: 0.7.0 2025-09-08T13:46:41,007 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T13:46:41,007 Getting page https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T13:46:41,008 Found index url https://www.piwheels.org/simple/ 2025-09-08T13:46:41,103 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2025-09-08T13:46:41,110 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv6l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,110 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv7l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,110 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv6l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,111 Skipping link: No binaries permitted for scikit-bio: 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https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=2dfb82a5726354b8f83f298206e3c08373a5c7502bcd2d68eba605d3d7a63398 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,112 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,112 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,112 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv6l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,112 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv7l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,112 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,112 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,112 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,113 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,113 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,113 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,113 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,113 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,113 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv6l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,113 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv7l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,113 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,114 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,114 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,114 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,114 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,114 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,114 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,114 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,115 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,115 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T13:46:41,115 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T13:46:41,115 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2025-09-08T13:46:41,141 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2025-09-08T13:46:41,142 Collecting scikit-bio==0.5.4 2025-09-08T13:46:41,143 Created temporary directory: /tmp/pip-unpack-us971pge 2025-09-08T13:46:41,422 Downloading scikit-bio-0.5.4.tar.gz (8.3 MB) 2025-09-08T13:46:43,283 Added scikit-bio==0.5.4 from https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz to build tracker '/tmp/pip-build-tracker-02jbo5xm' 2025-09-08T13:46:43,284 Running setup.py (path:/tmp/pip-wheel-0xekvlyo/scikit-bio_bd71e65ff48f48698ad81b9ef6c7f38e/setup.py) egg_info for package scikit-bio 2025-09-08T13:46:43,284 Created temporary directory: /tmp/pip-pip-egg-info-52j1o6u3 2025-09-08T13:46:43,284 Preparing metadata (setup.py): started 2025-09-08T13:46:43,285 Running command python setup.py egg_info 2025-09-08T13:46:44,135 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T13:46:44,135 !! 2025-09-08T13:46:44,136 ******************************************************************************** 2025-09-08T13:46:44,136 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T13:46:44,136 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T13:46:44,136 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T13:46:44,136 or your builds will no longer be supported. 2025-09-08T13:46:44,136 ******************************************************************************** 2025-09-08T13:46:44,136 !! 2025-09-08T13:46:44,137 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T13:46:47,099 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T13:46:47,099 warnings.warn(msg) 2025-09-08T13:46:47,262 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T13:46:47,263 !! 2025-09-08T13:46:47,263 ******************************************************************************** 2025-09-08T13:46:47,263 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T13:46:47,263 License :: OSI Approved :: BSD License 2025-09-08T13:46:47,263 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T13:46:47,263 ******************************************************************************** 2025-09-08T13:46:47,264 !! 2025-09-08T13:46:47,264 self._finalize_license_expression() 2025-09-08T13:46:47,342 running egg_info 2025-09-08T13:46:47,419 creating /tmp/pip-pip-egg-info-52j1o6u3/scikit_bio.egg-info 2025-09-08T13:46:47,420 writing /tmp/pip-pip-egg-info-52j1o6u3/scikit_bio.egg-info/PKG-INFO 2025-09-08T13:46:47,421 writing dependency_links to /tmp/pip-pip-egg-info-52j1o6u3/scikit_bio.egg-info/dependency_links.txt 2025-09-08T13:46:47,422 writing requirements to /tmp/pip-pip-egg-info-52j1o6u3/scikit_bio.egg-info/requires.txt 2025-09-08T13:46:47,422 writing top-level names to /tmp/pip-pip-egg-info-52j1o6u3/scikit_bio.egg-info/top_level.txt 2025-09-08T13:46:47,423 writing manifest file '/tmp/pip-pip-egg-info-52j1o6u3/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T13:46:47,781 reading manifest file '/tmp/pip-pip-egg-info-52j1o6u3/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T13:46:47,781 reading manifest template 'MANIFEST.in' 2025-09-08T13:46:47,807 no previously-included directories found matching 'doc/build' 2025-09-08T13:46:47,808 no previously-included directories found matching 'doc/source/generated' 2025-09-08T13:46:47,812 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-09-08T13:46:47,816 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-09-08T13:46:47,819 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-09-08T13:46:47,822 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2025-09-08T13:46:47,822 adding license file 'COPYING.txt' 2025-09-08T13:46:47,852 writing manifest file '/tmp/pip-pip-egg-info-52j1o6u3/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T13:46:47,992 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T13:46:47,997 Source in /tmp/pip-wheel-0xekvlyo/scikit-bio_bd71e65ff48f48698ad81b9ef6c7f38e has version 0.5.4, which satisfies requirement scikit-bio==0.5.4 from https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz 2025-09-08T13:46:47,998 Removed scikit-bio==0.5.4 from https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz from build tracker '/tmp/pip-build-tracker-02jbo5xm' 2025-09-08T13:46:48,005 Created temporary directory: /tmp/pip-unpack-xzh1bsmv 2025-09-08T13:46:48,006 Created temporary directory: /tmp/pip-unpack-k_zn2y5e 2025-09-08T13:46:48,006 Building wheels for collected packages: scikit-bio 2025-09-08T13:46:48,007 Created temporary directory: /tmp/pip-wheel-u7wvj4tb 2025-09-08T13:46:48,007 DEPRECATION: Building 'scikit-bio' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'scikit-bio'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T13:46:48,008 Building wheel for scikit-bio (setup.py): started 2025-09-08T13:46:48,009 Destination directory: /tmp/pip-wheel-u7wvj4tb 2025-09-08T13:46:48,009 Running command python setup.py bdist_wheel 2025-09-08T13:46:48,844 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T13:46:48,844 !! 2025-09-08T13:46:48,844 ******************************************************************************** 2025-09-08T13:46:48,844 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T13:46:48,844 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T13:46:48,845 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T13:46:48,845 or your builds will no longer be supported. 2025-09-08T13:46:48,845 ******************************************************************************** 2025-09-08T13:46:48,845 !! 2025-09-08T13:46:48,845 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T13:46:49,322 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T13:46:49,322 warnings.warn(msg) 2025-09-08T13:46:49,704 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T13:46:49,704 !! 2025-09-08T13:46:49,705 ******************************************************************************** 2025-09-08T13:46:49,705 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T13:46:49,705 License :: OSI Approved :: BSD License 2025-09-08T13:46:49,705 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T13:46:49,705 ******************************************************************************** 2025-09-08T13:46:49,705 !! 2025-09-08T13:46:49,705 self._finalize_license_expression() 2025-09-08T13:46:49,706 running bdist_wheel 2025-09-08T13:46:50,085 running build 2025-09-08T13:46:50,085 running build_py 2025-09-08T13:46:50,165 creating build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T13:46:50,166 copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T13:46:50,167 copying skbio/test.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T13:46:50,167 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T13:46:50,168 copying skbio/_base.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T13:46:50,168 creating build/lib.linux-armv7l-cpython-313/benchmarks 2025-09-08T13:46:50,169 copying benchmarks/benchmarks.py -> build/lib.linux-armv7l-cpython-313/benchmarks 2025-09-08T13:46:50,169 copying benchmarks/__init__.py -> build/lib.linux-armv7l-cpython-313/benchmarks 2025-09-08T13:46:50,170 creating build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T13:46:50,170 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T13:46:50,171 copying skbio/stats/power.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T13:46:50,172 copying skbio/stats/composition.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T13:46:50,172 copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T13:46:50,173 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T13:46:50,173 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T13:46:50,174 creating build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T13:46:50,174 copying skbio/metadata/_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T13:46:50,175 copying skbio/metadata/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T13:46:50,176 copying skbio/metadata/_repr.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T13:46:50,176 copying skbio/metadata/_mixin.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T13:46:50,177 copying skbio/metadata/_interval.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T13:46:50,178 creating build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,178 copying skbio/sequence/_dna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,179 copying skbio/sequence/_protein.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,179 copying skbio/sequence/distance.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,180 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,181 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,181 copying skbio/sequence/_repr.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,182 copying skbio/sequence/_rna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,182 copying skbio/sequence/_nucleotide_mixin.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,183 copying skbio/sequence/_grammared_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,183 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T13:46:50,184 creating build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T13:46:50,185 copying skbio/alignment/_indexing.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T13:46:50,185 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T13:46:50,186 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T13:46:50,186 copying skbio/alignment/_repr.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T13:46:50,187 copying skbio/alignment/_tabular_msa.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T13:46:50,188 creating build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T13:46:50,188 copying skbio/diversity/_block.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T13:46:50,189 copying skbio/diversity/_util.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T13:46:50,189 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T13:46:50,190 copying skbio/diversity/_driver.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T13:46:50,191 creating build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T13:46:50,191 copying skbio/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T13:46:50,192 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T13:46:50,192 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T13:46:50,193 creating build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T13:46:50,193 copying skbio/io/_iosources.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T13:46:50,194 copying skbio/io/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T13:46:50,194 copying skbio/io/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T13:46:50,195 copying skbio/io/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T13:46:50,195 copying skbio/io/util.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T13:46:50,196 copying skbio/io/registry.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T13:46:50,196 copying skbio/io/_fileobject.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T13:46:50,197 creating build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T13:46:50,197 copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T13:46:50,198 copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T13:46:50,199 copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T13:46:50,199 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T13:46:50,200 copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T13:46:50,200 copying skbio/util/_decorator.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T13:46:50,201 creating build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T13:46:50,201 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T13:46:50,202 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T13:46:50,203 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T13:46:50,203 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T13:46:50,204 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T13:46:50,205 creating build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T13:46:50,205 copying skbio/stats/evolve/_hommola.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T13:46:50,205 copying skbio/stats/evolve/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T13:46:50,206 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T13:46:50,206 copying skbio/stats/tests/test_composition.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T13:46:50,207 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T13:46:50,208 copying skbio/stats/tests/test_power.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T13:46:50,208 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T13:46:50,209 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T13:46:50,209 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T13:46:50,210 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T13:46:50,211 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T13:46:50,211 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T13:46:50,212 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T13:46:50,212 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T13:46:50,213 copying skbio/stats/distance/_permdisp.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T13:46:50,213 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T13:46:50,214 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T13:46:50,215 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T13:46:50,215 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T13:46:50,216 copying skbio/stats/ordination/_ordination_results.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T13:46:50,216 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T13:46:50,217 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T13:46:50,217 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T13:46:50,218 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T13:46:50,218 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T13:46:50,219 creating build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T13:46:50,220 copying skbio/stats/evolve/tests/test_hommola.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T13:46:50,220 copying skbio/stats/evolve/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T13:46:50,221 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T13:46:50,221 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T13:46:50,222 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T13:46:50,222 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T13:46:50,223 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T13:46:50,224 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T13:46:50,224 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T13:46:50,225 copying skbio/stats/distance/tests/test_permdisp.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T13:46:50,225 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T13:46:50,226 copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T13:46:50,226 copying skbio/stats/ordination/tests/test_ordination_results.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T13:46:50,227 copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T13:46:50,227 copying skbio/stats/ordination/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T13:46:50,228 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T13:46:50,228 copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T13:46:50,229 copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T13:46:50,230 creating build/lib.linux-armv7l-cpython-313/skbio/metadata/tests 2025-09-08T13:46:50,230 copying skbio/metadata/tests/test_mixin.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata/tests 2025-09-08T13:46:50,231 copying skbio/metadata/tests/test_interval.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata/tests 2025-09-08T13:46:50,231 copying skbio/metadata/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata/tests 2025-09-08T13:46:50,232 copying skbio/metadata/tests/test_intersection.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata/tests 2025-09-08T13:46:50,233 creating build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T13:46:50,233 copying skbio/sequence/tests/test_rna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T13:46:50,233 copying skbio/sequence/tests/test_protein.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T13:46:50,234 copying skbio/sequence/tests/test_nucleotide_sequences.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T13:46:50,235 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T13:46:50,235 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T13:46:50,236 copying skbio/sequence/tests/test_dna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T13:46:50,236 copying skbio/sequence/tests/test_distance.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T13:46:50,237 copying skbio/sequence/tests/test_grammared_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T13:46:50,237 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T13:46:50,238 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/_lib 2025-09-08T13:46:50,239 copying skbio/alignment/_lib/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/_lib 2025-09-08T13:46:50,240 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T13:46:50,240 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T13:46:50,241 copying skbio/alignment/tests/test_ssw.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T13:46:50,241 copying skbio/alignment/tests/test_tabular_msa.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T13:46:50,242 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T13:46:50,243 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T13:46:50,243 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T13:46:50,244 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T13:46:50,245 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T13:46:50,245 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T13:46:50,246 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T13:46:50,246 copying skbio/diversity/alpha/_faith_pd.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T13:46:50,247 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T13:46:50,248 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T13:46:50,248 copying skbio/diversity/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T13:46:50,248 copying skbio/diversity/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T13:46:50,249 copying skbio/diversity/tests/test_driver.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T13:46:50,249 copying skbio/diversity/tests/test_block.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T13:46:50,250 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T13:46:50,251 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T13:46:50,251 copying skbio/diversity/beta/_unifrac.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T13:46:50,252 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T13:46:50,252 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T13:46:50,253 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T13:46:50,254 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T13:46:50,254 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T13:46:50,255 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T13:46:50,255 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T13:46:50,256 copying skbio/diversity/alpha/tests/test_faith_pd.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T13:46:50,256 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T13:46:50,257 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T13:46:50,257 copying skbio/diversity/beta/tests/test_unifrac.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T13:46:50,258 creating build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,259 copying skbio/io/format/fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,259 copying skbio/io/format/lsmat.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,260 copying skbio/io/format/gff3.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,260 copying skbio/io/format/genbank.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,261 copying skbio/io/format/stockholm.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,262 copying skbio/io/format/qseq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,262 copying skbio/io/format/_blast.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,263 copying skbio/io/format/emptyfile.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,263 copying skbio/io/format/phylip.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,264 copying skbio/io/format/clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,264 copying skbio/io/format/fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,265 copying skbio/io/format/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,265 copying skbio/io/format/blast7.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,266 copying skbio/io/format/_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,266 copying skbio/io/format/blast6.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,267 copying skbio/io/format/ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,268 copying skbio/io/format/embl.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,268 copying skbio/io/format/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,269 copying skbio/io/format/newick.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T13:46:50,270 creating build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T13:46:50,270 copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T13:46:50,271 copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T13:46:50,271 copying skbio/io/tests/test_iosources.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T13:46:50,272 copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T13:46:50,273 creating build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,273 copying skbio/io/format/tests/test_qseq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,274 copying skbio/io/format/tests/test_gff3.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,274 copying skbio/io/format/tests/test_genbank.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,275 copying skbio/io/format/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,276 copying skbio/io/format/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,276 copying skbio/io/format/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,277 copying skbio/io/format/tests/test_blast7.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,277 copying skbio/io/format/tests/test_blast6.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,278 copying skbio/io/format/tests/test_newick.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,278 copying skbio/io/format/tests/test_stockholm.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,279 copying skbio/io/format/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,280 copying skbio/io/format/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,280 copying skbio/io/format/tests/test_lsmat.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,281 copying skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,281 copying skbio/io/format/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,282 copying skbio/io/format/tests/test_embl.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,283 copying skbio/io/format/tests/test_emptyfile.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,283 copying skbio/io/format/tests/test_phylip.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T13:46:50,284 creating build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T13:46:50,284 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T13:46:50,285 copying skbio/util/tests/test_decorator.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T13:46:50,285 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T13:46:50,286 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T13:46:50,287 creating build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T13:46:50,287 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T13:46:50,287 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T13:46:50,288 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T13:46:50,288 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T13:46:50,319 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,319 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,320 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,320 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,321 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,321 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,322 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,322 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,323 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,323 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,324 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,325 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,325 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T13:46:50,326 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,326 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,326 copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,327 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,327 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,328 copying skbio/stats/distance/tests/data/dm4.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,328 copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,329 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,329 copying skbio/stats/distance/tests/data/dm3.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,330 copying skbio/stats/distance/tests/data/dm2.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,331 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,331 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,332 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,332 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,333 copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,333 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,334 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,334 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,335 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,335 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,336 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,336 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,337 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,337 copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,338 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T13:46:50,339 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,339 copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,339 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,340 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,341 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,341 copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,342 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,342 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,343 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,343 copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,344 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,344 copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,345 copying skbio/stats/ordination/tests/data/varechem.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,345 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,346 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,346 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,347 copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,348 copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,348 copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,349 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,349 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,350 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,350 copying skbio/stats/ordination/tests/data/varespec.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,351 copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,351 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,352 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,352 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,353 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,353 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,354 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,354 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,355 copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,355 copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,356 copying skbio/stats/ordination/tests/data/PCoA_skbio -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,356 copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,357 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,357 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,358 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,358 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,359 copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,359 copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T13:46:50,360 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T13:46:50,360 copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T13:46:50,361 copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T13:46:50,361 copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T13:46:50,362 copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T13:46:50,362 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T13:46:50,363 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T13:46:50,363 copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T13:46:50,364 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T13:46:50,364 copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T13:46:50,365 copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T13:46:50,365 copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T13:46:50,366 creating build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T13:46:50,366 copying skbio/io/tests/data/example_file.gz -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T13:46:50,367 copying skbio/io/tests/data/example_file.bz2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T13:46:50,367 copying skbio/io/tests/data/big5_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T13:46:50,368 copying skbio/io/tests/data/example_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T13:46:50,368 copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T13:46:50,369 copying skbio/io/tests/data/big5_file.bz2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T13:46:50,369 copying skbio/io/tests/data/big5_file.gz -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T13:46:50,370 copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T13:46:50,370 creating build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,370 copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,371 copying skbio/io/format/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,371 copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,372 copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,372 copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,373 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,374 copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,374 copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,375 copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,375 copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,376 copying skbio/io/format/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,376 copying skbio/io/format/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,377 copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,377 copying skbio/io/format/tests/data/ordination_error24 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,378 copying skbio/io/format/tests/data/stockholm_multiple_references -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,378 copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,379 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,379 copying skbio/io/format/tests/data/ordination_error23 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,380 copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,380 copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,381 copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,381 copying skbio/io/format/tests/data/ordination_error15 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,382 copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,382 copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,383 copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,383 copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,384 copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,384 copying skbio/io/format/tests/data/genbank_missing_locus_name -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,385 copying skbio/io/format/tests/data/ordination_error12 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,385 copying skbio/io/format/tests/data/genbank_single_record_upper -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,386 copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,386 copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,387 copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,387 copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,388 copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,388 copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,389 copying skbio/io/format/tests/data/stockholm_malformed_data_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,389 copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,390 copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,390 copying skbio/io/format/tests/data/ordination_error13 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,391 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,392 copying skbio/io/format/tests/data/stockholm_duplicate_gr -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,392 copying skbio/io/format/tests/data/ordination_error14 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,393 copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,393 copying skbio/io/format/tests/data/ordination_error22 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,394 copying skbio/io/format/tests/data/blast7_custom_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,394 copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,395 copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,395 copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,396 copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,396 copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,397 copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,397 copying skbio/io/format/tests/data/stockholm_missing_reference_items -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,398 copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,398 copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,399 copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,399 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,400 copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,400 copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,401 copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,401 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,402 copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,402 copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,403 copying skbio/io/format/tests/data/embl_feature_level_record_no_FT -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,403 copying skbio/io/format/tests/data/stockholm_missing_footer -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,404 copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,404 copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,405 copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,405 copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,406 copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,406 copying skbio/io/format/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,407 copying skbio/io/format/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,407 copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,408 copying skbio/io/format/tests/data/stockholm_runon_references -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,408 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,409 copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,409 copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,410 copying skbio/io/format/tests/data/stockholm_multiple_msa -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,411 copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,411 copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,412 copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,412 copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,413 copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,413 copying skbio/io/format/tests/data/blast7_default_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,414 copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,414 copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,415 copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,415 copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,416 copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,416 copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,417 copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,417 copying skbio/io/format/tests/data/stockholm_different_padding -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,418 copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,418 copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,419 copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,419 copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,420 copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,420 copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,421 copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,422 copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,422 copying skbio/io/format/tests/data/legacy9_and_blast7_default -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,423 copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,423 copying skbio/io/format/tests/data/ordination_error9 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,424 copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,424 copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,425 copying skbio/io/format/tests/data/embl_single_record_simple -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,425 copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,426 copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,426 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,427 copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,427 copying skbio/io/format/tests/data/ordination_error7 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,428 copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,428 copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,429 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,429 copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,430 copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,430 copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,431 copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,431 copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,432 copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,432 copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,433 copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,433 copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,434 copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,434 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,435 copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,435 copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,436 copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,436 copying skbio/io/format/tests/data/ordination_error1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,437 copying skbio/io/format/tests/data/ordination_error6 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,437 copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,438 copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,438 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,439 copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,439 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,440 copying skbio/io/format/tests/data/ordination_error8 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,441 copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,441 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,442 copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,442 copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,443 copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,443 copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,444 copying skbio/io/format/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,444 copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,445 copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,445 copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,446 copying skbio/io/format/tests/data/embl_uniprot_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,446 copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,447 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,447 copying skbio/io/format/tests/data/tsv_10_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,448 copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,448 copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,449 copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,449 copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,450 copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,451 copying skbio/io/format/tests/data/blast7_custom_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,451 copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,452 copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,453 copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,453 copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,454 copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,454 copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,455 copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,455 copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,456 copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,456 copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,457 copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,457 copying skbio/io/format/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,458 copying skbio/io/format/tests/data/stockholm_no_data -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,458 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,459 copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,459 copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,460 copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,460 copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,461 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,461 copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,462 copying skbio/io/format/tests/data/ordination_error20 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,462 copying skbio/io/format/tests/data/ordination_error18 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,463 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,463 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,464 copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,464 copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,465 copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,465 copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,466 copying skbio/io/format/tests/data/ordination_error11 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,467 copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,467 copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,468 copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,468 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,469 copying skbio/io/format/tests/data/ordination_error16 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,469 copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,470 copying skbio/io/format/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,470 copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,471 copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,471 copying skbio/io/format/tests/data/genbank_single_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,472 copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,472 copying skbio/io/format/tests/data/gff3_dna -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,473 copying skbio/io/format/tests/data/gff3_multi_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,473 copying skbio/io/format/tests/data/legacy9_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,474 copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,474 copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,475 copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,475 copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,476 copying skbio/io/format/tests/data/ordination_error17 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,476 copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,477 copying skbio/io/format/tests/data/ordination_error10 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,477 copying skbio/io/format/tests/data/ordination_error19 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,478 copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,478 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,479 copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,479 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,480 copying skbio/io/format/tests/data/ordination_error21 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,481 copying skbio/io/format/tests/data/blast7_invalid_gibberish -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,481 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,482 copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,482 copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,483 copying skbio/io/format/tests/data/embl_feature_level_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,483 copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,484 copying skbio/io/format/tests/data/embl_single_record_upper -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,484 copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,485 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,485 copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,486 copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,486 copying skbio/io/format/tests/data/stockholm_duplicate_gc -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,487 copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,487 copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,488 copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,488 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,489 copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,489 copying skbio/io/format/tests/data/embl_constructed -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,490 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,491 copying skbio/io/format/tests/data/embl_multi_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,491 copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,492 copying skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,492 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,493 copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,493 copying skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,494 copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,494 copying skbio/io/format/tests/data/gff3_bad_missing_directive -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,495 copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,495 copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,496 copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,496 copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,497 copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,497 copying skbio/io/format/tests/data/stockholm_single_reference -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,498 copying skbio/io/format/tests/data/gff3_single_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,498 copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,499 copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,500 copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,500 copying skbio/io/format/tests/data/legacy9_mixed_nans -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,501 copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,501 copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,502 copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,502 copying skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,503 copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,503 copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,504 copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,504 copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,505 copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,505 copying skbio/io/format/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,506 copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,506 copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,507 copying skbio/io/format/tests/data/ordination_error3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,507 copying skbio/io/format/tests/data/ordination_error4 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,508 copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,508 copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,509 copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,509 copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,510 copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,511 copying skbio/io/format/tests/data/stockholm_rna -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,511 copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,512 copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,512 copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,513 copying skbio/io/format/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,513 copying skbio/io/format/tests/data/embl_single_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,514 copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,514 copying skbio/io/format/tests/data/whitespace_only -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,515 copying skbio/io/format/tests/data/empty -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,515 copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,516 copying skbio/io/format/tests/data/stockholm_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,516 copying skbio/io/format/tests/data/ordination_error5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,517 copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,517 copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,518 copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,518 copying skbio/io/format/tests/data/ordination_error2 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,519 copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,519 copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,520 copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,521 copying skbio/io/format/tests/data/legacy9_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,521 copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,522 copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,522 copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,523 copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,523 copying skbio/io/format/tests/data/embl_single_record_lower -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,524 copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,524 copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,525 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,525 copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,526 copying skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,526 copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,527 copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,527 copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,528 copying skbio/io/format/tests/data/stockholm_invalid_data_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,528 copying skbio/io/format/tests/data/embl_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,529 copying skbio/io/format/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,529 copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,530 copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,530 copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,531 copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,531 copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,532 copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,533 copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,533 copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,534 copying skbio/io/format/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,534 copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,535 copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,535 copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,536 copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,536 copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,537 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,537 copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,538 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,538 copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,539 copying skbio/io/format/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,539 copying skbio/io/format/tests/data/qual_single_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,540 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,540 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,541 copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,541 copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,542 copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,542 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,543 copying skbio/io/format/tests/data/blast6_invalid_column_types -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,543 copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T13:46:50,553 running build_ext 2025-09-08T13:46:50,880 building 'skbio.metadata._intersection' extension 2025-09-08T13:46:50,881 creating build/temp.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T13:46:50,881 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c skbio/metadata/_intersection.c -o build/temp.linux-armv7l-cpython-313/skbio/metadata/_intersection.o 2025-09-08T13:46:51,239 skbio/metadata/_intersection.c:49:12: fatal error: longintrepr.h: No such file or directory 2025-09-08T13:46:51,240 49 | #include "longintrepr.h" 2025-09-08T13:46:51,240 | ^~~~~~~~~~~~~~~ 2025-09-08T13:46:51,240 compilation terminated. 2025-09-08T13:46:51,243 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T13:46:51,417 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T13:46:51,429 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T13:46:51,429 exec(compile('"'"''"'"''"'"' 2025-09-08T13:46:51,429 # This is -- a caller that pip uses to run setup.py 2025-09-08T13:46:51,429 # 2025-09-08T13:46:51,429 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T13:46:51,429 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T13:46:51,429 # - It provides a clear error message when setuptools is not installed. 2025-09-08T13:46:51,429 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T13:46:51,429 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T13:46:51,429 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T13:46:51,429 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T13:46:51,429 import os, sys, tokenize, traceback 2025-09-08T13:46:51,429 2025-09-08T13:46:51,429 try: 2025-09-08T13:46:51,429 import setuptools 2025-09-08T13:46:51,429 except ImportError: 2025-09-08T13:46:51,429 print( 2025-09-08T13:46:51,429 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T13:46:51,429 "the build environment with exception:", 2025-09-08T13:46:51,429 file=sys.stderr, 2025-09-08T13:46:51,429 ) 2025-09-08T13:46:51,429 traceback.print_exc() 2025-09-08T13:46:51,429 sys.exit(1) 2025-09-08T13:46:51,429 2025-09-08T13:46:51,429 __file__ = %r 2025-09-08T13:46:51,429 sys.argv[0] = __file__ 2025-09-08T13:46:51,429 2025-09-08T13:46:51,429 if os.path.exists(__file__): 2025-09-08T13:46:51,429 filename = __file__ 2025-09-08T13:46:51,429 with tokenize.open(__file__) as f: 2025-09-08T13:46:51,429 setup_py_code = f.read() 2025-09-08T13:46:51,429 else: 2025-09-08T13:46:51,429 filename = "" 2025-09-08T13:46:51,429 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T13:46:51,429 2025-09-08T13:46:51,429 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T13:46:51,429 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-0xekvlyo/scikit-bio_bd71e65ff48f48698ad81b9ef6c7f38e/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-u7wvj4tb[/] 2025-09-08T13:46:51,429 [bold magenta]cwd[/]: /tmp/pip-wheel-0xekvlyo/scikit-bio_bd71e65ff48f48698ad81b9ef6c7f38e/ 2025-09-08T13:46:51,429 Building wheel for scikit-bio (setup.py): finished with status 'error' 2025-09-08T13:46:51,430 ERROR: Failed building wheel for scikit-bio 2025-09-08T13:46:51,431 Running setup.py clean for scikit-bio 2025-09-08T13:46:51,431 Running command python setup.py clean 2025-09-08T13:46:52,308 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T13:46:52,308 !! 2025-09-08T13:46:52,308 ******************************************************************************** 2025-09-08T13:46:52,308 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T13:46:52,308 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T13:46:52,308 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T13:46:52,309 or your builds will no longer be supported. 2025-09-08T13:46:52,309 ******************************************************************************** 2025-09-08T13:46:52,309 !! 2025-09-08T13:46:52,309 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T13:46:52,817 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T13:46:52,818 warnings.warn(msg) 2025-09-08T13:46:53,199 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T13:46:53,199 !! 2025-09-08T13:46:53,199 ******************************************************************************** 2025-09-08T13:46:53,199 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T13:46:53,200 License :: OSI Approved :: BSD License 2025-09-08T13:46:53,200 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T13:46:53,200 ******************************************************************************** 2025-09-08T13:46:53,200 !! 2025-09-08T13:46:53,200 self._finalize_license_expression() 2025-09-08T13:46:53,276 running clean 2025-09-08T13:46:53,425 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T13:46:53,425 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T13:46:53,446 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T13:46:53,447 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T13:46:53,447 removing 'build' 2025-09-08T13:46:53,586 Failed to build scikit-bio 2025-09-08T13:46:53,586 ERROR: Failed to build one or more wheels 2025-09-08T13:46:53,587 Exception information: 2025-09-08T13:46:53,587 Traceback (most recent call last): 2025-09-08T13:46:53,587 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T13:46:53,587 status = _inner_run() 2025-09-08T13:46:53,587 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T13:46:53,587 return self.run(options, args) 2025-09-08T13:46:53,587 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T13:46:53,587 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T13:46:53,587 return func(self, options, args) 2025-09-08T13:46:53,587 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T13:46:53,587 raise CommandError("Failed to build one or more wheels") 2025-09-08T13:46:53,587 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T13:46:53,591 Removed build tracker: '/tmp/pip-build-tracker-02jbo5xm'