2025-09-08T14:13:19,426 Created temporary directory: /tmp/pip-build-tracker-5a8ktphp
2025-09-08T14:13:19,426 Initialized build tracking at /tmp/pip-build-tracker-5a8ktphp
2025-09-08T14:13:19,426 Created build tracker: /tmp/pip-build-tracker-5a8ktphp
2025-09-08T14:13:19,427 Entered build tracker: /tmp/pip-build-tracker-5a8ktphp
2025-09-08T14:13:19,427 Created temporary directory: /tmp/pip-wheel-px4zomao
2025-09-08T14:13:19,430 Created temporary directory: /tmp/pip-ephem-wheel-cache-htbml2t2
2025-09-08T14:13:19,488 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T14:13:19,490 2 location(s) to search for versions of camoco:
2025-09-08T14:13:19,490 * https://pypi.org/simple/camoco/
2025-09-08T14:13:19,490 * https://www.piwheels.org/simple/camoco/
2025-09-08T14:13:19,491 Fetching project page and analyzing links: https://pypi.org/simple/camoco/
2025-09-08T14:13:19,491 Getting page https://pypi.org/simple/camoco/
2025-09-08T14:13:19,492 Found index url https://pypi.org/simple/
2025-09-08T14:13:19,562 Fetched page https://pypi.org/simple/camoco/ as application/vnd.pypi.simple.v1+json
2025-09-08T14:13:19,564   Found link https://files.pythonhosted.org/packages/43/41/d0d81fb45e70fbeb4eecd8a45e1cf580cd00221f41110291c9d81431051f/camoco-0.1.0.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.0
2025-09-08T14:13:19,564   Found link https://files.pythonhosted.org/packages/ac/2a/a2d57a86796705e676e89ba06ac5ca9d6031f8257d3d191fe1b62cb3e027/camoco-0.1.1.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.1
2025-09-08T14:13:19,564   Found link https://files.pythonhosted.org/packages/36/76/4ead6259156a34138d5a1470a6fffe90bf84060ecbf6ba24d35ff6444556/camoco-0.1.2.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.2
2025-09-08T14:13:19,565   Found link https://files.pythonhosted.org/packages/b8/39/ef06f826443955669d6b53c265239e080a7d419ab14e479fb2f0dc30e3a0/camoco-0.1.3.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.3
2025-09-08T14:13:19,565   Found link https://files.pythonhosted.org/packages/2f/89/053c4d7d7e219d10a8f79a57f55b054e3d2072597332a06dbc62f567ee59/camoco-0.1.4.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.4
2025-09-08T14:13:19,565   Found link https://files.pythonhosted.org/packages/1b/b1/231f9627750ca9cabee0762a3682cc2bb3f30650f6a8232d8e3af32a3823/camoco-0.1.5.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.5
2025-09-08T14:13:19,565   Found link https://files.pythonhosted.org/packages/fa/6e/370a6eff0d3fb9ff43b0ea5899a393ccca0773a5d0ced60193672a08ca9d/camoco-0.1.6.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.6
2025-09-08T14:13:19,565   Found link https://files.pythonhosted.org/packages/cb/99/3aeb19604c709bafd7be0564423b6d56ec9dbb608f9ec763b58faedf361c/camoco-0.1.7.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.7
2025-09-08T14:13:19,566   Found link https://files.pythonhosted.org/packages/86/b9/74946b1d3f0214e451528e29131ca23b99bbe78720b9981638d20838bfeb/camoco-0.1.8.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.8
2025-09-08T14:13:19,566   Found link https://files.pythonhosted.org/packages/52/a8/a249e717bcc0e09f6adfad9d9aefe49f58a611730cb5002c13ef8fa7ef55/camoco-0.6.0.tar.gz (from https://pypi.org/simple/camoco/), version: 0.6.0
2025-09-08T14:13:19,566   Found link https://files.pythonhosted.org/packages/89/1f/b09a750aad7666bc593123781cc284d610df777a4360f6f1bd8fb0d7ff27/camoco-0.6.1.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6), version: 0.6.1
2025-09-08T14:13:19,567   Found link https://files.pythonhosted.org/packages/93/58/a1a019531c166ea0c32326ff0cbb6e2c29b8b9550b3b52215facac02e214/camoco-0.6.2.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6), version: 0.6.2
2025-09-08T14:13:19,567   Link requires a different Python (3.13.5 not in: '>=3.6, <3.7'): https://files.pythonhosted.org/packages/23/0e/3616fbe340618546b8ddab8711e9f1442c2a9ff2ec315eb1cc9afd6d2123/camoco-0.6.3.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6, <3.7)
2025-09-08T14:13:19,568   Skipping link: 0.6.3 Requires-Python >=3.6, <3.7: https://files.pythonhosted.org/packages/23/0e/3616fbe340618546b8ddab8711e9f1442c2a9ff2ec315eb1cc9afd6d2123/camoco-0.6.3.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6, <3.7)
2025-09-08T14:13:19,568   Link requires a different Python (3.13.5 not in: '>=3.6,<3.8'): https://files.pythonhosted.org/packages/d6/cf/de367502c08f3d8e0573d22627ce777a358353beba4747adf88b06bf3eb6/camoco-0.6.4.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6,<3.8)
2025-09-08T14:13:19,568   Skipping link: 0.6.4 Requires-Python >=3.6,<3.8: https://files.pythonhosted.org/packages/d6/cf/de367502c08f3d8e0573d22627ce777a358353beba4747adf88b06bf3eb6/camoco-0.6.4.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6,<3.8)
2025-09-08T14:13:19,569 Fetching project page and analyzing links: https://www.piwheels.org/simple/camoco/
2025-09-08T14:13:19,569 Getting page https://www.piwheels.org/simple/camoco/
2025-09-08T14:13:19,570 Found index url https://www.piwheels.org/simple/
2025-09-08T14:13:19,663 Fetched page https://www.piwheels.org/simple/camoco/ as text/html
2025-09-08T14:13:19,671   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.4-cp37-cp37m-linux_armv7l.whl#sha256=d0d0b425ed77e32a1170ae0f22bac78b5de2f610153004b71eaf2989f854fdab (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6,<3.8)
2025-09-08T14:13:19,672   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.4-cp37-cp37m-linux_armv6l.whl#sha256=d0d0b425ed77e32a1170ae0f22bac78b5de2f610153004b71eaf2989f854fdab (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6,<3.8)
2025-09-08T14:13:19,672   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp39-cp39-linux_armv6l.whl#sha256=ff1d8441751a2549de7aa0d0368f745f8c63fba7d2d7366dd4e73b665253d8f3 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T14:13:19,672   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp39-cp39-linux_armv7l.whl#sha256=ff1d8441751a2549de7aa0d0368f745f8c63fba7d2d7366dd4e73b665253d8f3 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T14:13:19,672   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp37-cp37m-linux_armv7l.whl#sha256=cfb087c1c8e4b1a4331967280b52f41407b3415dfc5bf26752e2afb94625aa01 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T14:13:19,672   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp37-cp37m-linux_armv6l.whl#sha256=cfb087c1c8e4b1a4331967280b52f41407b3415dfc5bf26752e2afb94625aa01 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T14:13:19,673   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=31da9a10bb2a019a258661a6d451e7fe7ccd0b23a600e420fa48b04f7ff7fb6e (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T14:13:19,673   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=31da9a10bb2a019a258661a6d451e7fe7ccd0b23a600e420fa48b04f7ff7fb6e (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T14:13:19,673   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=22f1d9fe682376c5496dd25093fc5301da2bcbed873914817bed44c851833935 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T14:13:19,673   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp37-cp37m-linux_armv6l.whl#sha256=22f1d9fe682376c5496dd25093fc5301da2bcbed873914817bed44c851833935 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6)
2025-09-08T14:13:19,673   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=4bdafca9724ecc4955293e68bfabb83823855cd749021d49fb3f5067ce7d9228 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,673   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=4bdafca9724ecc4955293e68bfabb83823855cd749021d49fb3f5067ce7d9228 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,673   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=a26297be87d3fdc3fb8b04f6fb1efce22ff4ec448a71ffe1ea1777fbde91c38d (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,674   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=a26297be87d3fdc3fb8b04f6fb1efce22ff4ec448a71ffe1ea1777fbde91c38d (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,674   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp34-cp34m-linux_armv7l.whl#sha256=bd39032f6e2c4ad36305d2d15a002b9dfff2fa354c328011223157c158d2fc27 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,674   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp34-cp34m-linux_armv6l.whl#sha256=bd39032f6e2c4ad36305d2d15a002b9dfff2fa354c328011223157c158d2fc27 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,674   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp35-cp35m-linux_armv7l.whl#sha256=a21020956af128edb2dfe8f85c414242506215eca23728524734a2dbbc10e88b (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,674   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp35-cp35m-linux_armv6l.whl#sha256=a21020956af128edb2dfe8f85c414242506215eca23728524734a2dbbc10e88b (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,674   Skipping link: No binaries permitted for camoco: https://www.piwheels.org/simple/camoco/camoco-0.6.0-cp313-cp313-linux_armv6l.whl#sha256=4b0e87b52dcbc3a3fde80865045449d2efb291bb893528ae8650279816dc1a24 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,675   Skipping link: No binaries permitted for camoco: https://www.piwheels.org/simple/camoco/camoco-0.6.0-cp313-cp313-linux_armv7l.whl#sha256=4b0e87b52dcbc3a3fde80865045449d2efb291bb893528ae8650279816dc1a24 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,675   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.8-py3-none-any.whl#sha256=5967431750ad7d2a4e19fc2ef9be96146bd3528e08a55132b291e71c530a56a0 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,675   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.5-py3-none-any.whl#sha256=7d45165eef62a61d02b83b93c1dc453b4b19759fe246c5eb94d77a9a83da92bc (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,675   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.4-py3-none-any.whl#sha256=7b5981f5bb8d5863c7117c0f7b548062cd5298639a75db798e0dc947246d6a8f (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,675   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.3-py3-none-any.whl#sha256=9c6a8449c0225d9fda2378d3c0cffd7006eadc3df56d5fa2137dbd8359214b11 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,675   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.2-py3-none-any.whl#sha256=47efa56feee029688bcf6052bdcef369d49122b13433f0f697b995c1f3297ad1 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,676   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.1-py3-none-any.whl#sha256=86d86983f412f451a7bf2012297bd7671faf368a068fa95bc051211a8d575b37 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,676   Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.0-py3-none-any.whl#sha256=ce68a7c5d9fb6c86b28f5c15eabe5ef3aacfdfba82e414b351efd1f0dab45621 (from https://www.piwheels.org/simple/camoco/)
2025-09-08T14:13:19,676 Skipping link: not a file: https://www.piwheels.org/simple/camoco/
2025-09-08T14:13:19,676 Skipping link: not a file: https://pypi.org/simple/camoco/
2025-09-08T14:13:19,701 Given no hashes to check 1 links for project 'camoco': discarding no candidates
2025-09-08T14:13:19,702 Collecting camoco==0.6.1
2025-09-08T14:13:19,704   Created temporary directory: /tmp/pip-unpack-fous9_4l
2025-09-08T14:13:19,843   Downloading camoco-0.6.1.tar.gz (99 kB)
2025-09-08T14:13:19,907   Added camoco==0.6.1 from https://files.pythonhosted.org/packages/89/1f/b09a750aad7666bc593123781cc284d610df777a4360f6f1bd8fb0d7ff27/camoco-0.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-5a8ktphp'
2025-09-08T14:13:19,908   Running setup.py (path:/tmp/pip-wheel-px4zomao/camoco_176bb548f64941bba710367dcaa1fb6b/setup.py) egg_info for package camoco
2025-09-08T14:13:19,908   Created temporary directory: /tmp/pip-pip-egg-info-3t2onoc_
2025-09-08T14:13:19,909   Preparing metadata (setup.py): started
2025-09-08T14:13:19,909   Running command python setup.py egg_info
2025-09-08T14:13:20,753   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T14:13:20,753   !!

2025-09-08T14:13:20,753           ********************************************************************************
2025-09-08T14:13:20,753           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T14:13:20,753           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T14:13:20,753           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T14:13:20,754           or your builds will no longer be supported.
2025-09-08T14:13:20,754           ********************************************************************************

2025-09-08T14:13:20,754   !!
2025-09-08T14:13:20,754     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T14:13:21,085   running egg_info
2025-09-08T14:13:21,152   creating /tmp/pip-pip-egg-info-3t2onoc_/camoco.egg-info
2025-09-08T14:13:21,152   writing /tmp/pip-pip-egg-info-3t2onoc_/camoco.egg-info/PKG-INFO
2025-09-08T14:13:21,155   writing dependency_links to /tmp/pip-pip-egg-info-3t2onoc_/camoco.egg-info/dependency_links.txt
2025-09-08T14:13:21,157   writing requirements to /tmp/pip-pip-egg-info-3t2onoc_/camoco.egg-info/requires.txt
2025-09-08T14:13:21,157   writing top-level names to /tmp/pip-pip-egg-info-3t2onoc_/camoco.egg-info/top_level.txt
2025-09-08T14:13:21,158   writing manifest file '/tmp/pip-pip-egg-info-3t2onoc_/camoco.egg-info/SOURCES.txt'
2025-09-08T14:13:21,677   reading manifest file '/tmp/pip-pip-egg-info-3t2onoc_/camoco.egg-info/SOURCES.txt'
2025-09-08T14:13:21,681   writing manifest file '/tmp/pip-pip-egg-info-3t2onoc_/camoco.egg-info/SOURCES.txt'
2025-09-08T14:13:21,815   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T14:13:21,819   Source in /tmp/pip-wheel-px4zomao/camoco_176bb548f64941bba710367dcaa1fb6b has version 0.6.1, which satisfies requirement camoco==0.6.1 from https://files.pythonhosted.org/packages/89/1f/b09a750aad7666bc593123781cc284d610df777a4360f6f1bd8fb0d7ff27/camoco-0.6.1.tar.gz
2025-09-08T14:13:21,820   Removed camoco==0.6.1 from https://files.pythonhosted.org/packages/89/1f/b09a750aad7666bc593123781cc284d610df777a4360f6f1bd8fb0d7ff27/camoco-0.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-5a8ktphp'
2025-09-08T14:13:21,830 Created temporary directory: /tmp/pip-unpack-as369612
2025-09-08T14:13:21,830 Created temporary directory: /tmp/pip-unpack-7w5lmnre
2025-09-08T14:13:21,831 Building wheels for collected packages: camoco
2025-09-08T14:13:21,832   Created temporary directory: /tmp/pip-wheel-ig56o_5b
2025-09-08T14:13:21,833   DEPRECATION: Building 'camoco' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'camoco'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T14:13:21,834   Building wheel for camoco (setup.py): started
2025-09-08T14:13:21,835   Destination directory: /tmp/pip-wheel-ig56o_5b
2025-09-08T14:13:21,835   Running command python setup.py bdist_wheel
2025-09-08T14:13:22,677   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T14:13:22,677   !!

2025-09-08T14:13:22,678           ********************************************************************************
2025-09-08T14:13:22,678           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T14:13:22,678           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T14:13:22,678           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T14:13:22,678           or your builds will no longer be supported.
2025-09-08T14:13:22,678           ********************************************************************************

2025-09-08T14:13:22,678   !!
2025-09-08T14:13:22,679     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T14:13:22,949   running bdist_wheel
2025-09-08T14:13:23,460   running build
2025-09-08T14:13:23,460   running build_py
2025-09-08T14:13:23,530   creating build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,530   copying camoco/Ontology.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,531   copying camoco/GOnt.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,531   copying camoco/Chrom.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,532   copying camoco/RefGen.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,533   copying camoco/GEO.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,533   copying camoco/GWAS.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,534   copying camoco/Tools.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,535   copying camoco/Config.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,535   copying camoco/Genome.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,536   copying camoco/MapOnt.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,536   copying camoco/__init__.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,537   copying camoco/Locus.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,537   copying camoco/Exceptions.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,538   copying camoco/COB.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,538   copying camoco/Expr.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,539   copying camoco/Term.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,540   copying camoco/Camoco.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,540   copying camoco/SimulationAnalysis.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,541   copying camoco/Overlap.py -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,542   creating build/lib.linux-armv7l-cpython-313/camoco/cli
2025-09-08T14:13:23,542   copying camoco/cli/__init__.py -> build/lib.linux-armv7l-cpython-313/camoco/cli
2025-09-08T14:13:23,543   creating build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,543   copying camoco/cli/commands/locality.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,543   copying camoco/cli/commands/list.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,544   copying camoco/cli/commands/plotGWAS.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,545   copying camoco/cli/commands/simulateGWAS.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,545   copying camoco/cli/commands/cistrans.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,546   copying camoco/cli/commands/__init__.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,546   copying camoco/cli/commands/geneneighbors.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,547   copying camoco/cli/commands/snp2gene.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,547   copying camoco/cli/commands/remove.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,548   copying camoco/cli/commands/build.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,548   copying camoco/cli/commands/crossRef.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,549   copying camoco/cli/commands/Analysis.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,549   copying camoco/cli/commands/health.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands
2025-09-08T14:13:23,550   running egg_info
2025-09-08T14:13:23,615   writing camoco.egg-info/PKG-INFO
2025-09-08T14:13:23,618   writing dependency_links to camoco.egg-info/dependency_links.txt
2025-09-08T14:13:23,620   writing requirements to camoco.egg-info/requires.txt
2025-09-08T14:13:23,620   writing top-level names to camoco.egg-info/top_level.txt
2025-09-08T14:13:23,691   reading manifest file 'camoco.egg-info/SOURCES.txt'
2025-09-08T14:13:23,697   writing manifest file 'camoco.egg-info/SOURCES.txt'
2025-09-08T14:13:23,699   copying camoco/PCCUP.pyx -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,700   copying camoco/RefGenDist.pyx -> build/lib.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:23,701   copying camoco/cli/camoco -> build/lib.linux-armv7l-cpython-313/camoco/cli
2025-09-08T14:13:23,702   running build_ext
2025-09-08T14:13:24,143   Compiling camoco/PCCUP.pyx because it changed.
2025-09-08T14:13:24,143   [1/1] Cythonizing camoco/PCCUP.pyx
2025-09-08T14:13:27,400   building 'camoco.PCCUP' extension
2025-09-08T14:13:27,400   creating build/temp.linux-armv7l-cpython-313/camoco
2025-09-08T14:13:27,401   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c camoco/PCCUP.c -o build/temp.linux-armv7l-cpython-313/camoco/PCCUP.o
2025-09-08T14:13:48,191   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/camoco/PCCUP.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/camoco/PCCUP.cpython-313-arm-linux-gnueabihf.so
2025-09-08T14:13:48,330   Compiling camoco/RefGenDist.pyx because it changed.
2025-09-08T14:13:48,330   [1/1] Cythonizing camoco/RefGenDist.pyx
2025-09-08T14:13:49,994   building 'camoco.RefGenDist' extension
2025-09-08T14:13:49,995   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c camoco/RefGenDist.c -o build/temp.linux-armv7l-cpython-313/camoco/RefGenDist.o
2025-09-08T14:14:08,513   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/camoco/RefGenDist.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/camoco/RefGenDist.cpython-313-arm-linux-gnueabihf.so
2025-09-08T14:14:08,651   running build_scripts
2025-09-08T14:14:08,652   creating build/scripts-3.13
2025-09-08T14:14:08,652   copying and adjusting camoco/cli/camoco -> build/scripts-3.13
2025-09-08T14:14:08,654   changing mode of build/scripts-3.13/camoco from 644 to 755
2025-09-08T14:14:08,799   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T14:14:08,799   !!

2025-09-08T14:14:08,800           ********************************************************************************
2025-09-08T14:14:08,800           Please avoid running ``setup.py`` directly.
2025-09-08T14:14:08,800           Instead, use pypa/build, pypa/installer or other
2025-09-08T14:14:08,800           standards-based tools.

2025-09-08T14:14:08,800           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T14:14:08,800           or your builds will no longer be supported.

2025-09-08T14:14:08,801           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T14:14:08,801           ********************************************************************************

2025-09-08T14:14:08,801   !!
2025-09-08T14:14:08,801     self.initialize_options()
2025-09-08T14:14:08,878   installing to build/bdist.linux-armv7l/wheel
2025-09-08T14:14:08,878   running install
2025-09-08T14:14:08,901   running install_lib
2025-09-08T14:14:08,972   creating build/bdist.linux-armv7l/wheel
2025-09-08T14:14:08,973   creating build/bdist.linux-armv7l/wheel/camoco
2025-09-08T14:14:08,973   copying build/lib.linux-armv7l-cpython-313/camoco/RefGenDist.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,977   copying build/lib.linux-armv7l-cpython-313/camoco/PCCUP.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,981   copying build/lib.linux-armv7l-cpython-313/camoco/RefGenDist.pyx -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,981   copying build/lib.linux-armv7l-cpython-313/camoco/PCCUP.pyx -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,982   creating build/bdist.linux-armv7l/wheel/camoco/cli
2025-09-08T14:14:08,982   copying build/lib.linux-armv7l-cpython-313/camoco/cli/camoco -> build/bdist.linux-armv7l/wheel/./camoco/cli
2025-09-08T14:14:08,983   creating build/bdist.linux-armv7l/wheel/camoco/cli/commands
2025-09-08T14:14:08,983   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/health.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,983   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/Analysis.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,984   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/crossRef.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,984   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/build.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,985   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/remove.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,985   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/snp2gene.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,986   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/geneneighbors.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,986   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,986   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/cistrans.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,987   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/simulateGWAS.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,987   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/plotGWAS.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,987   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/list.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,988   copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/locality.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands
2025-09-08T14:14:08,988   copying build/lib.linux-armv7l-cpython-313/camoco/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./camoco/cli
2025-09-08T14:14:08,989   copying build/lib.linux-armv7l-cpython-313/camoco/Overlap.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,989   copying build/lib.linux-armv7l-cpython-313/camoco/SimulationAnalysis.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,989   copying build/lib.linux-armv7l-cpython-313/camoco/Camoco.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,990   copying build/lib.linux-armv7l-cpython-313/camoco/Term.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,990   copying build/lib.linux-armv7l-cpython-313/camoco/Expr.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,991   copying build/lib.linux-armv7l-cpython-313/camoco/COB.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,991   copying build/lib.linux-armv7l-cpython-313/camoco/Exceptions.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,992   copying build/lib.linux-armv7l-cpython-313/camoco/Locus.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,992   copying build/lib.linux-armv7l-cpython-313/camoco/__init__.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,993   copying build/lib.linux-armv7l-cpython-313/camoco/MapOnt.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,993   copying build/lib.linux-armv7l-cpython-313/camoco/Genome.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,993   copying build/lib.linux-armv7l-cpython-313/camoco/Config.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,994   copying build/lib.linux-armv7l-cpython-313/camoco/Tools.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,994   copying build/lib.linux-armv7l-cpython-313/camoco/GWAS.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,995   copying build/lib.linux-armv7l-cpython-313/camoco/GEO.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,995   copying build/lib.linux-armv7l-cpython-313/camoco/RefGen.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,995   copying build/lib.linux-armv7l-cpython-313/camoco/Chrom.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,996   copying build/lib.linux-armv7l-cpython-313/camoco/GOnt.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,996   copying build/lib.linux-armv7l-cpython-313/camoco/Ontology.py -> build/bdist.linux-armv7l/wheel/./camoco
2025-09-08T14:14:08,997   running install_egg_info
2025-09-08T14:14:09,067   Copying camoco.egg-info to build/bdist.linux-armv7l/wheel/./camoco-0.6.1-py3.13.egg-info
2025-09-08T14:14:09,069   running install_scripts
2025-09-08T14:14:09,070   creating build/bdist.linux-armv7l/wheel/camoco-0.6.1.data/scripts
2025-09-08T14:14:09,070   copying build/scripts-3.13/camoco -> build/bdist.linux-armv7l/wheel/camoco-0.6.1.data/scripts
2025-09-08T14:14:09,071   changing mode of build/bdist.linux-armv7l/wheel/camoco-0.6.1.data/scripts/camoco to 755
2025-09-08T14:14:09,120   creating build/bdist.linux-armv7l/wheel/camoco-0.6.1.dist-info/WHEEL
2025-09-08T14:14:09,121   creating '/tmp/pip-wheel-ig56o_5b/camoco-0.6.1-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-08T14:14:09,130   adding 'camoco/COB.py'
2025-09-08T14:14:09,132   adding 'camoco/Camoco.py'
2025-09-08T14:14:09,133   adding 'camoco/Chrom.py'
2025-09-08T14:14:09,134   adding 'camoco/Config.py'
2025-09-08T14:14:09,134   adding 'camoco/Exceptions.py'
2025-09-08T14:14:09,138   adding 'camoco/Expr.py'
2025-09-08T14:14:09,140   adding 'camoco/GEO.py'
2025-09-08T14:14:09,142   adding 'camoco/GOnt.py'
2025-09-08T14:14:09,143   adding 'camoco/GWAS.py'
2025-09-08T14:14:09,144   adding 'camoco/Genome.py'
2025-09-08T14:14:09,145   adding 'camoco/Locus.py'
2025-09-08T14:14:09,146   adding 'camoco/MapOnt.py'
2025-09-08T14:14:09,148   adding 'camoco/Ontology.py'
2025-09-08T14:14:09,152   adding 'camoco/Overlap.py'
2025-09-08T14:14:09,366   adding 'camoco/PCCUP.cpython-313-arm-linux-gnueabihf.so'
2025-09-08T14:14:09,373   adding 'camoco/PCCUP.pyx'
2025-09-08T14:14:09,378   adding 'camoco/RefGen.py'
2025-09-08T14:14:09,572   adding 'camoco/RefGenDist.cpython-313-arm-linux-gnueabihf.so'
2025-09-08T14:14:09,578   adding 'camoco/RefGenDist.pyx'
2025-09-08T14:14:09,580   adding 'camoco/SimulationAnalysis.py'
2025-09-08T14:14:09,581   adding 'camoco/Term.py'
2025-09-08T14:14:09,582   adding 'camoco/Tools.py'
2025-09-08T14:14:09,583   adding 'camoco/__init__.py'
2025-09-08T14:14:09,584   adding 'camoco/cli/__init__.py'
2025-09-08T14:14:09,587   adding 'camoco/cli/camoco'
2025-09-08T14:14:09,588   adding 'camoco/cli/commands/Analysis.py'
2025-09-08T14:14:09,588   adding 'camoco/cli/commands/__init__.py'
2025-09-08T14:14:09,589   adding 'camoco/cli/commands/build.py'
2025-09-08T14:14:09,590   adding 'camoco/cli/commands/cistrans.py'
2025-09-08T14:14:09,591   adding 'camoco/cli/commands/crossRef.py'
2025-09-08T14:14:09,591   adding 'camoco/cli/commands/geneneighbors.py'
2025-09-08T14:14:09,593   adding 'camoco/cli/commands/health.py'
2025-09-08T14:14:09,594   adding 'camoco/cli/commands/list.py'
2025-09-08T14:14:09,594   adding 'camoco/cli/commands/locality.py'
2025-09-08T14:14:09,595   adding 'camoco/cli/commands/plotGWAS.py'
2025-09-08T14:14:09,596   adding 'camoco/cli/commands/remove.py'
2025-09-08T14:14:09,597   adding 'camoco/cli/commands/simulateGWAS.py'
2025-09-08T14:14:09,598   adding 'camoco/cli/commands/snp2gene.py'
2025-09-08T14:14:09,602   adding 'camoco-0.6.1.data/scripts/camoco'
2025-09-08T14:14:09,603   adding 'camoco-0.6.1.dist-info/METADATA'
2025-09-08T14:14:09,603   adding 'camoco-0.6.1.dist-info/WHEEL'
2025-09-08T14:14:09,604   adding 'camoco-0.6.1.dist-info/top_level.txt'
2025-09-08T14:14:09,605   adding 'camoco-0.6.1.dist-info/RECORD'
2025-09-08T14:14:09,605   removing build/bdist.linux-armv7l/wheel
2025-09-08T14:14:10,216   Building wheel for camoco (setup.py): finished with status 'done'
2025-09-08T14:14:10,226   Created wheel for camoco: filename=camoco-0.6.1-cp313-cp313-linux_armv7l.whl size=908543 sha256=1c7bb7cb996f76fb17a37cd9fcaf988a0534b3e22db18ab2ec4237e23f182a14
2025-09-08T14:14:10,227   Stored in directory: /tmp/pip-ephem-wheel-cache-htbml2t2/wheels/e4/00/eb/e89990c5d77d6219ccd7d384f015332d358ca33e6d1fd9740f
2025-09-08T14:14:10,235 Successfully built camoco
2025-09-08T14:14:10,238 Removed build tracker: '/tmp/pip-build-tracker-5a8ktphp'