2025-09-08T14:16:54,617 Created temporary directory: /tmp/pip-build-tracker-_ku_5p3k 2025-09-08T14:16:54,617 Initialized build tracking at /tmp/pip-build-tracker-_ku_5p3k 2025-09-08T14:16:54,618 Created build tracker: /tmp/pip-build-tracker-_ku_5p3k 2025-09-08T14:16:54,618 Entered build tracker: /tmp/pip-build-tracker-_ku_5p3k 2025-09-08T14:16:54,618 Created temporary directory: /tmp/pip-wheel-csdmct4e 2025-09-08T14:16:54,621 Created temporary directory: /tmp/pip-ephem-wheel-cache-dzc2lb_e 2025-09-08T14:16:54,681 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T14:16:54,683 2 location(s) to search for versions of gff3tool: 2025-09-08T14:16:54,683 * https://pypi.org/simple/gff3tool/ 2025-09-08T14:16:54,683 * https://www.piwheels.org/simple/gff3tool/ 2025-09-08T14:16:54,683 Fetching project page and analyzing links: https://pypi.org/simple/gff3tool/ 2025-09-08T14:16:54,684 Getting page https://pypi.org/simple/gff3tool/ 2025-09-08T14:16:54,685 Found index url https://pypi.org/simple/ 2025-09-08T14:16:54,754 Fetched page https://pypi.org/simple/gff3tool/ as application/vnd.pypi.simple.v1+json 2025-09-08T14:16:54,756 Found link https://files.pythonhosted.org/packages/71/33/dac2be6f38dd40d4f914814e7afe2cc5391f1bfecc77439612284de537a1/gff3tool-1.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.1.0 2025-09-08T14:16:54,756 Found link https://files.pythonhosted.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.3.0 2025-09-08T14:16:54,757 Found link https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.1 2025-09-08T14:16:54,757 Found link https://files.pythonhosted.org/packages/23/bb/0b7952dfc7fb8992e6d7349eb55cbbe51e6c0750d57e33c01de5be39da46/gff3tool-1.4.2.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.2 2025-09-08T14:16:54,757 Found link https://files.pythonhosted.org/packages/7c/79/b59b3e47735edfe2ac2a9334c8e2836d63c0899b51f9badc416ae07e8353/gff3tool-1.4.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.3 2025-09-08T14:16:54,757 Found link https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.4 2025-09-08T14:16:54,757 Skipping link: No binaries permitted for gff3tool: https://files.pythonhosted.org/packages/2a/4c/a16d0aae5fa870fc7630eb0536042fd3e0494467efd9f27cea6090cdbbe0/gff3tool-1.4.5-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/gff3tool/) 2025-09-08T14:16:54,758 Found link https://files.pythonhosted.org/packages/f8/78/330f714b6e771d69079128a44f61830c9ce22969eaa3b176dafb94c48809/gff3tool-1.4.5.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.5 2025-09-08T14:16:54,758 Found link https://files.pythonhosted.org/packages/8a/82/0f528dc498d7fdfbd6b8a968ed1cfee43ffa55461e77830a22f606aea3bb/gff3tool-2.0.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.0 2025-09-08T14:16:54,758 Found link https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.1 2025-09-08T14:16:54,758 Found link https://files.pythonhosted.org/packages/21/2e/7e77d34adec82b4d896c8959c7993534810f8bc43cc374e984e5635bbf94/gff3tool-2.0.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.3 2025-09-08T14:16:54,758 Found link https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.1.0 2025-09-08T14:16:54,759 Fetching project page and analyzing links: https://www.piwheels.org/simple/gff3tool/ 2025-09-08T14:16:54,759 Getting page https://www.piwheels.org/simple/gff3tool/ 2025-09-08T14:16:54,760 Found index url https://www.piwheels.org/simple/ 2025-09-08T14:16:54,848 Fetched page https://www.piwheels.org/simple/gff3tool/ as text/html 2025-09-08T14:16:54,858 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp311-cp311-linux_armv6l.whl#sha256=866502237ec1e32fd2caee5c04df61c4464dc7db901009e864c3f53ff3f43d94 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,858 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp311-cp311-linux_armv7l.whl#sha256=866502237ec1e32fd2caee5c04df61c4464dc7db901009e864c3f53ff3f43d94 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,858 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv6l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,858 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv7l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,859 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,859 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,859 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,859 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,859 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp311-cp311-linux_armv6l.whl#sha256=95e1e75ca03aacb334f33561f347c21a95265b3d091aad9a31329060ff7c1931 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,860 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp311-cp311-linux_armv7l.whl#sha256=95e1e75ca03aacb334f33561f347c21a95265b3d091aad9a31329060ff7c1931 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,860 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,860 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,860 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,860 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,861 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,861 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,861 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,861 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv7l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,861 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp34-cp34m-linux_armv6l.whl#sha256=fa519097d18d8d8239808e305f0bb0549b3dd93a72ed8d5ea6f45d785e6bef11 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,862 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp34-cp34m-linux_armv7l.whl#sha256=fa519097d18d8d8239808e305f0bb0549b3dd93a72ed8d5ea6f45d785e6bef11 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,862 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,862 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,862 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=a89f1ece9e20b3183b0eba298b269f1c4b0109af60b409f5d3f7bc0be4914bfd (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,862 Skipping link: No binaries permitted for gff3tool: 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https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp35-cp35m-linux_armv7l.whl#sha256=a6d1a1bf91d08ad305f7476e9a3439e57749b4091c112cbf4f73569a4f711a68 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,863 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=0be9d0d0079481fcbd19198c4fba52c6703b11b043e14bc17cd9b7863857efde (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,863 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=0be9d0d0079481fcbd19198c4fba52c6703b11b043e14bc17cd9b7863857efde (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,863 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp34-cp34m-linux_armv7l.whl#sha256=a6197f7982794de21eb411313c8591f643ea19667efba72907a0fbafd47ca4e7 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,864 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp34-cp34m-linux_armv6l.whl#sha256=a6197f7982794de21eb411313c8591f643ea19667efba72907a0fbafd47ca4e7 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,864 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=036c36c64ae995bbd9b6234e9f0b2fdaed36e2a4869fa2885c0fa449d01f6bd1 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,864 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp311-cp311-linux_armv7l.whl#sha256=036c36c64ae995bbd9b6234e9f0b2fdaed36e2a4869fa2885c0fa449d01f6bd1 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,864 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-1.3.0-py3-none-any.whl#sha256=f993f46b60c812a88426ea96ad2c23aa521aee04c8bdad4016e21d03d6186291 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,864 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-1.1.0-py3-none-any.whl#sha256=f5eefabf7e1b27382cef033e939fd956121ebf02ae4e7085b83ade5f98c69d90 (from https://www.piwheels.org/simple/gff3tool/) 2025-09-08T14:16:54,864 Skipping link: not a file: https://www.piwheels.org/simple/gff3tool/ 2025-09-08T14:16:54,864 Skipping link: not a file: https://pypi.org/simple/gff3tool/ 2025-09-08T14:16:54,889 Given no hashes to check 1 links for project 'gff3tool': discarding no candidates 2025-09-08T14:16:54,890 Collecting gff3tool==1.4.4 2025-09-08T14:16:54,891 Created temporary directory: /tmp/pip-unpack-vham_i71 2025-09-08T14:16:55,090 Downloading gff3tool-1.4.4.tar.gz (75 kB) 2025-09-08T14:16:55,153 Added gff3tool==1.4.4 from https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz to build tracker '/tmp/pip-build-tracker-_ku_5p3k' 2025-09-08T14:16:55,154 Running setup.py (path:/tmp/pip-wheel-csdmct4e/gff3tool_a19d6778789a4e728153a05cfe9273d5/setup.py) egg_info for package gff3tool 2025-09-08T14:16:55,155 Created temporary directory: /tmp/pip-pip-egg-info-dixbmqis 2025-09-08T14:16:55,155 Preparing metadata (setup.py): started 2025-09-08T14:16:55,155 Running command python setup.py egg_info 2025-09-08T14:16:55,806 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:55,806 !! 2025-09-08T14:16:55,806 ******************************************************************************** 2025-09-08T14:16:55,806 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-08T14:16:55,806 versions. Please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:55,807 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T14:16:55,807 or your builds will no longer be supported. 2025-09-08T14:16:55,807 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T14:16:55,807 ******************************************************************************** 2025-09-08T14:16:55,807 !! 2025-09-08T14:16:55,807 opt = self._enforce_underscore(opt, section) 2025-09-08T14:16:56,232 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:56,232 !! 2025-09-08T14:16:56,232 ******************************************************************************** 2025-09-08T14:16:56,233 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-08T14:16:56,233 versions. Please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:56,233 (Affected: gff3tool). 2025-09-08T14:16:56,233 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T14:16:56,233 or your builds will no longer be supported. 2025-09-08T14:16:56,233 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T14:16:56,233 ******************************************************************************** 2025-09-08T14:16:56,233 !! 2025-09-08T14:16:56,233 opt = self._enforce_underscore(opt, section) 2025-09-08T14:16:56,234 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T14:16:56,234 !! 2025-09-08T14:16:56,234 ******************************************************************************** 2025-09-08T14:16:56,234 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T14:16:56,234 License :: Public Domain 2025-09-08T14:16:56,234 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T14:16:56,234 ******************************************************************************** 2025-09-08T14:16:56,235 !! 2025-09-08T14:16:56,235 self._finalize_license_expression() 2025-09-08T14:16:56,305 running egg_info 2025-09-08T14:16:56,379 creating /tmp/pip-pip-egg-info-dixbmqis/gff3tool.egg-info 2025-09-08T14:16:56,379 writing /tmp/pip-pip-egg-info-dixbmqis/gff3tool.egg-info/PKG-INFO 2025-09-08T14:16:56,380 writing dependency_links to /tmp/pip-pip-egg-info-dixbmqis/gff3tool.egg-info/dependency_links.txt 2025-09-08T14:16:56,381 writing entry points to /tmp/pip-pip-egg-info-dixbmqis/gff3tool.egg-info/entry_points.txt 2025-09-08T14:16:56,382 writing top-level names to /tmp/pip-pip-egg-info-dixbmqis/gff3tool.egg-info/top_level.txt 2025-09-08T14:16:56,382 writing manifest file '/tmp/pip-pip-egg-info-dixbmqis/gff3tool.egg-info/SOURCES.txt' 2025-09-08T14:16:56,536 reading manifest file '/tmp/pip-pip-egg-info-dixbmqis/gff3tool.egg-info/SOURCES.txt' 2025-09-08T14:16:56,536 reading manifest template 'MANIFEST.in' 2025-09-08T14:16:56,542 writing manifest file '/tmp/pip-pip-egg-info-dixbmqis/gff3tool.egg-info/SOURCES.txt' 2025-09-08T14:16:56,654 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T14:16:56,659 Source in /tmp/pip-wheel-csdmct4e/gff3tool_a19d6778789a4e728153a05cfe9273d5 has version 1.4.4, which satisfies requirement gff3tool==1.4.4 from https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz 2025-09-08T14:16:56,659 Removed gff3tool==1.4.4 from https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz from build tracker '/tmp/pip-build-tracker-_ku_5p3k' 2025-09-08T14:16:56,662 Created temporary directory: /tmp/pip-unpack-wbrdhyeq 2025-09-08T14:16:56,663 Created temporary directory: /tmp/pip-unpack-tw5bbe94 2025-09-08T14:16:56,663 Building wheels for collected packages: gff3tool 2025-09-08T14:16:56,664 Created temporary directory: /tmp/pip-wheel-rn9809u_ 2025-09-08T14:16:56,665 DEPRECATION: Building 'gff3tool' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'gff3tool'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T14:16:56,666 Building wheel for gff3tool (setup.py): started 2025-09-08T14:16:56,666 Destination directory: /tmp/pip-wheel-rn9809u_ 2025-09-08T14:16:56,666 Running command python setup.py bdist_wheel 2025-09-08T14:16:57,301 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:57,302 !! 2025-09-08T14:16:57,302 ******************************************************************************** 2025-09-08T14:16:57,302 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-08T14:16:57,302 versions. Please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:57,302 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T14:16:57,302 or your builds will no longer be supported. 2025-09-08T14:16:57,303 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T14:16:57,303 ******************************************************************************** 2025-09-08T14:16:57,303 !! 2025-09-08T14:16:57,303 opt = self._enforce_underscore(opt, section) 2025-09-08T14:16:57,798 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:57,798 !! 2025-09-08T14:16:57,798 ******************************************************************************** 2025-09-08T14:16:57,798 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-08T14:16:57,799 versions. Please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:57,799 (Affected: gff3tool). 2025-09-08T14:16:57,799 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T14:16:57,799 or your builds will no longer be supported. 2025-09-08T14:16:57,799 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T14:16:57,799 ******************************************************************************** 2025-09-08T14:16:57,799 !! 2025-09-08T14:16:57,799 opt = self._enforce_underscore(opt, section) 2025-09-08T14:16:57,800 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T14:16:57,800 !! 2025-09-08T14:16:57,800 ******************************************************************************** 2025-09-08T14:16:57,800 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T14:16:57,800 License :: Public Domain 2025-09-08T14:16:57,800 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T14:16:57,800 ******************************************************************************** 2025-09-08T14:16:57,801 !! 2025-09-08T14:16:57,801 self._finalize_license_expression() 2025-09-08T14:16:57,801 running bdist_wheel 2025-09-08T14:16:58,090 running build 2025-09-08T14:16:58,095 Traceback (most recent call last): 2025-09-08T14:16:58,101 File "", line 2, in 2025-09-08T14:16:58,102 exec(compile(''' 2025-09-08T14:16:58,102 ~~~~^^^^^^^^^^^^ 2025-09-08T14:16:58,102 # This is -- a caller that pip uses to run setup.py 2025-09-08T14:16:58,102 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T14:16:58,102 ...<32 lines>... 2025-09-08T14:16:58,102 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T14:16:58,102 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T14:16:58,102 ''' % ('/tmp/pip-wheel-csdmct4e/gff3tool_a19d6778789a4e728153a05cfe9273d5/setup.py',), "", "exec")) 2025-09-08T14:16:58,102 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T14:16:58,103 File "", line 35, in 2025-09-08T14:16:58,103 File "/tmp/pip-wheel-csdmct4e/gff3tool_a19d6778789a4e728153a05cfe9273d5/setup.py", line 78, in 2025-09-08T14:16:58,103 setup( 2025-09-08T14:16:58,103 ~~~~~^ 2025-09-08T14:16:58,103 # This is the name of your project. The first time you publish this 2025-09-08T14:16:58,103 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T14:16:58,103 ...<157 lines>... 2025-09-08T14:16:58,103 }, 2025-09-08T14:16:58,103 ^^ 2025-09-08T14:16:58,104 ) 2025-09-08T14:16:58,104 ^ 2025-09-08T14:16:58,104 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T14:16:58,104 return distutils.core.setup(**attrs) 2025-09-08T14:16:58,104 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:16:58,104 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T14:16:58,104 return run_commands(dist) 2025-09-08T14:16:58,104 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T14:16:58,104 dist.run_commands() 2025-09-08T14:16:58,105 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T14:16:58,105 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T14:16:58,105 self.run_command(cmd) 2025-09-08T14:16:58,105 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T14:16:58,105 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T14:16:58,105 super().run_command(command) 2025-09-08T14:16:58,105 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:16:58,105 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T14:16:58,105 cmd_obj.run() 2025-09-08T14:16:58,106 ~~~~~~~~~~~^^ 2025-09-08T14:16:58,106 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T14:16:58,106 self.run_command("build") 2025-09-08T14:16:58,106 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:16:58,106 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T14:16:58,106 self.distribution.run_command(command) 2025-09-08T14:16:58,106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:16:58,106 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T14:16:58,106 super().run_command(command) 2025-09-08T14:16:58,107 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:16:58,107 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T14:16:58,107 cmd_obj.run() 2025-09-08T14:16:58,107 ~~~~~~~~~~~^^ 2025-09-08T14:16:58,107 File "/tmp/pip-wheel-csdmct4e/gff3tool_a19d6778789a4e728153a05cfe9273d5/setup.py", line 41, in run 2025-09-08T14:16:58,107 urllib.urlretrieve( 2025-09-08T14:16:58,107 ^^^^^^^^^^^^^^^^^^ 2025-09-08T14:16:58,107 AttributeError: module 'urllib' has no attribute 'urlretrieve' 2025-09-08T14:16:58,215 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T14:16:58,227 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T14:16:58,227 exec(compile('"'"''"'"''"'"' 2025-09-08T14:16:58,227 # This is -- a caller that pip uses to run setup.py 2025-09-08T14:16:58,227 # 2025-09-08T14:16:58,227 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T14:16:58,227 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T14:16:58,227 # - It provides a clear error message when setuptools is not installed. 2025-09-08T14:16:58,227 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T14:16:58,227 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T14:16:58,227 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T14:16:58,227 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T14:16:58,227 import os, sys, tokenize, traceback 2025-09-08T14:16:58,227 2025-09-08T14:16:58,227 try: 2025-09-08T14:16:58,227 import setuptools 2025-09-08T14:16:58,227 except ImportError: 2025-09-08T14:16:58,227 print( 2025-09-08T14:16:58,227 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T14:16:58,227 "the build environment with exception:", 2025-09-08T14:16:58,227 file=sys.stderr, 2025-09-08T14:16:58,227 ) 2025-09-08T14:16:58,227 traceback.print_exc() 2025-09-08T14:16:58,227 sys.exit(1) 2025-09-08T14:16:58,227 2025-09-08T14:16:58,227 __file__ = %r 2025-09-08T14:16:58,227 sys.argv[0] = __file__ 2025-09-08T14:16:58,227 2025-09-08T14:16:58,227 if os.path.exists(__file__): 2025-09-08T14:16:58,227 filename = __file__ 2025-09-08T14:16:58,227 with tokenize.open(__file__) as f: 2025-09-08T14:16:58,227 setup_py_code = f.read() 2025-09-08T14:16:58,227 else: 2025-09-08T14:16:58,227 filename = "" 2025-09-08T14:16:58,227 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T14:16:58,227 2025-09-08T14:16:58,227 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T14:16:58,227 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-csdmct4e/gff3tool_a19d6778789a4e728153a05cfe9273d5/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-rn9809u_[/] 2025-09-08T14:16:58,228 [bold magenta]cwd[/]: /tmp/pip-wheel-csdmct4e/gff3tool_a19d6778789a4e728153a05cfe9273d5/ 2025-09-08T14:16:58,228 Building wheel for gff3tool (setup.py): finished with status 'error' 2025-09-08T14:16:58,229 ERROR: Failed building wheel for gff3tool 2025-09-08T14:16:58,230 Running setup.py clean for gff3tool 2025-09-08T14:16:58,230 Running command python setup.py clean 2025-09-08T14:16:58,887 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:58,887 !! 2025-09-08T14:16:58,888 ******************************************************************************** 2025-09-08T14:16:58,888 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-08T14:16:58,888 versions. Please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:58,888 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T14:16:58,888 or your builds will no longer be supported. 2025-09-08T14:16:58,888 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T14:16:58,888 ******************************************************************************** 2025-09-08T14:16:58,889 !! 2025-09-08T14:16:58,889 opt = self._enforce_underscore(opt, section) 2025-09-08T14:16:59,314 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:59,314 !! 2025-09-08T14:16:59,314 ******************************************************************************** 2025-09-08T14:16:59,314 Usage of dash-separated 'dist-dir' will not be supported in future 2025-09-08T14:16:59,314 versions. Please use the underscore name 'dist_dir' instead. 2025-09-08T14:16:59,314 (Affected: gff3tool). 2025-09-08T14:16:59,315 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-08T14:16:59,315 or your builds will no longer be supported. 2025-09-08T14:16:59,315 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-08T14:16:59,315 ******************************************************************************** 2025-09-08T14:16:59,315 !! 2025-09-08T14:16:59,315 opt = self._enforce_underscore(opt, section) 2025-09-08T14:16:59,315 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T14:16:59,315 !! 2025-09-08T14:16:59,316 ******************************************************************************** 2025-09-08T14:16:59,316 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T14:16:59,316 License :: Public Domain 2025-09-08T14:16:59,316 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T14:16:59,316 ******************************************************************************** 2025-09-08T14:16:59,316 !! 2025-09-08T14:16:59,316 self._finalize_license_expression() 2025-09-08T14:16:59,389 running clean 2025-09-08T14:16:59,462 'build/lib' does not exist -- can't clean it 2025-09-08T14:16:59,462 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T14:16:59,462 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T14:16:59,577 Failed to build gff3tool 2025-09-08T14:16:59,578 ERROR: Failed to build one or more wheels 2025-09-08T14:16:59,579 Exception information: 2025-09-08T14:16:59,579 Traceback (most recent call last): 2025-09-08T14:16:59,579 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T14:16:59,579 status = _inner_run() 2025-09-08T14:16:59,579 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T14:16:59,579 return self.run(options, args) 2025-09-08T14:16:59,579 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T14:16:59,579 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T14:16:59,579 return func(self, options, args) 2025-09-08T14:16:59,579 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T14:16:59,579 raise CommandError("Failed to build one or more wheels") 2025-09-08T14:16:59,579 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T14:16:59,583 Removed build tracker: '/tmp/pip-build-tracker-_ku_5p3k'