2025-09-08T14:53:01,854 Created temporary directory: /tmp/pip-build-tracker-0sbdphu3 2025-09-08T14:53:01,854 Initialized build tracking at /tmp/pip-build-tracker-0sbdphu3 2025-09-08T14:53:01,855 Created build tracker: /tmp/pip-build-tracker-0sbdphu3 2025-09-08T14:53:01,855 Entered build tracker: /tmp/pip-build-tracker-0sbdphu3 2025-09-08T14:53:01,855 Created temporary directory: /tmp/pip-wheel-lmgrovvy 2025-09-08T14:53:01,858 Created temporary directory: /tmp/pip-ephem-wheel-cache-zbjkhp29 2025-09-08T14:53:01,914 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T14:53:01,917 2 location(s) to search for versions of pyxmolpp2: 2025-09-08T14:53:01,917 * https://pypi.org/simple/pyxmolpp2/ 2025-09-08T14:53:01,917 * https://www.piwheels.org/simple/pyxmolpp2/ 2025-09-08T14:53:01,917 Fetching project page and analyzing links: https://pypi.org/simple/pyxmolpp2/ 2025-09-08T14:53:01,917 Getting page https://pypi.org/simple/pyxmolpp2/ 2025-09-08T14:53:01,919 Found index url https://pypi.org/simple/ 2025-09-08T14:53:01,988 Fetched page https://pypi.org/simple/pyxmolpp2/ as application/vnd.pypi.simple.v1+json 2025-09-08T14:53:01,992 Found link https://files.pythonhosted.org/packages/41/1d/65a5e96d7d0c86d687b4e7e8d10ac232f573e14b9d1884111ebd1a477502/pyxmolpp2-0.0.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.0.1 2025-09-08T14:53:01,992 Found link https://files.pythonhosted.org/packages/e2/27/027a784be451eb7fe624a90523f4f289d6814db90adddbf09318ae136e4e/pyxmolpp2-0.1.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.1.0 2025-09-08T14:53:01,993 Found link https://files.pythonhosted.org/packages/49/94/6e7b42f4898aff76225a6e7ac3148dd53fd871a8cf1fa87876b5e5661fe4/pyxmolpp2-0.1.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.1.1 2025-09-08T14:53:01,993 Found link https://files.pythonhosted.org/packages/d9/89/7e348a861f1cbf78307f4617881c0996e74b38ab6f1d5d927b5be3c8b934/pyxmolpp2-0.2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.2.0 2025-09-08T14:53:01,993 Found link https://files.pythonhosted.org/packages/8c/89/16cf719b01cb66c3f62f5540abeca7bc26a1dbe7cd83c048d94dd4c60c37/pyxmolpp2-0.3.0.dev0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0.dev0 2025-09-08T14:53:01,993 Found link https://files.pythonhosted.org/packages/32/94/5d324e82f3785ea81d6913a781e674f95995cbaa54ec32171d0da3056f1c/pyxmolpp2-0.3.0.dev1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0.dev1 2025-09-08T14:53:01,993 Found link https://files.pythonhosted.org/packages/66/fa/f3e3cd5cdf297b37e10a8131075358a3e663831b965ce71900122e765d06/pyxmolpp2-0.3.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0 2025-09-08T14:53:01,994 Found link https://files.pythonhosted.org/packages/db/70/90e7913b6629f135ab3f8dcfae9c428aaf311e981db0caada01f51c8751a/pyxmolpp2-0.4.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.4.0 2025-09-08T14:53:01,994 Found link https://files.pythonhosted.org/packages/ea/1d/22d1b9eff0ed0b73bb8ba213c459a8818103847199add714dec7c0862c9b/pyxmolpp2-0.6.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.6.0 2025-09-08T14:53:01,994 Found link https://files.pythonhosted.org/packages/fb/26/6420cdf2349c7bbdf98f58cdb260e1ed0dee55d290cdab6b79d99b457ef9/pyxmolpp2-0.6.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.6.1 2025-09-08T14:53:01,994 Found link https://files.pythonhosted.org/packages/27/33/21c7acd6275667d94465436e150f6f3724935c4fd171dd51db516d5a3495/pyxmolpp2-0.7.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.7.0 2025-09-08T14:53:01,994 Found link https://files.pythonhosted.org/packages/7b/36/aac554b63b1e7fd94ead8a17af4a3d968b9ebab94c905369d5ec20a140f0/pyxmolpp2-0.7.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.7.1 2025-09-08T14:53:01,994 Found link https://files.pythonhosted.org/packages/e0/ad/0e16148eed09fc4190458935fbbf948aaa2794d1620842f0e3fc3aaa7f14/pyxmolpp2-0.8.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.0 2025-09-08T14:53:01,995 Found link https://files.pythonhosted.org/packages/1a/97/f5a5894f690501edb1f32ce0373f364abd70a55293b4222a2e8fd2b62b08/pyxmolpp2-0.8.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.1 2025-09-08T14:53:01,995 Found link https://files.pythonhosted.org/packages/c7/ed/0784103f8a79a3c24b71e560ef517c623b029a04c2c4f67820a70bc68f27/pyxmolpp2-0.8.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.2 2025-09-08T14:53:01,995 Found link https://files.pythonhosted.org/packages/85/17/8ab6537831012139ee04eaba92e3eb2b1724a81c3ed27f191b3d28f6789c/pyxmolpp2-0.9.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.9.0 2025-09-08T14:53:01,995 Found link https://files.pythonhosted.org/packages/55/4b/d6906a0c33681b8f03fa9497cd40a74b069c7393351927dd772503d0ecfb/pyxmolpp2-0.9.0.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.9.0.post1 2025-09-08T14:53:01,995 Found link https://files.pythonhosted.org/packages/b7/9b/fb4bb3e07ea292b34f258da0a9f08ae96f18a990477d2f7714319dc11bb1/pyxmolpp2-0.10.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.0 2025-09-08T14:53:01,996 Found link https://files.pythonhosted.org/packages/50/38/47ab868258a00a5d017424f8d5456a3718a475f1a854bdc999df7f116075/pyxmolpp2-0.10.1.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.1.post1 2025-09-08T14:53:01,996 Found link https://files.pythonhosted.org/packages/26/fc/9e70d088b5e6fd688e01c0f13ac748d813f813b8a358bacb8eb66d1971fb/pyxmolpp2-0.10.1.post2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.1.post2 2025-09-08T14:53:01,996 Found link https://files.pythonhosted.org/packages/64/1e/ab2524f122b9966e8c51e2228fdde7f00d7475eec722a27b80aa3e26bfad/pyxmolpp2-0.10.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.2 2025-09-08T14:53:01,996 Found link https://files.pythonhosted.org/packages/ac/ac/417e76e0eb127e941fb6599915dd543a50e115925180fe97c83a6947ef5d/pyxmolpp2-0.10.3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.3 2025-09-08T14:53:01,996 Found link https://files.pythonhosted.org/packages/60/57/46db548b97f72c8ce5fbdc48392cf8870cff33afb5e95d24d78dec9c23c4/pyxmolpp2-0.10.4.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.4 2025-09-08T14:53:01,997 Found link https://files.pythonhosted.org/packages/3a/2c/8275c969590e230dd2c56daab6e40d236df9736f268aa121ea426c97f819/pyxmolpp2-1.0.0.dev1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0.dev1 2025-09-08T14:53:01,997 Found link https://files.pythonhosted.org/packages/78/a7/ea6c951361316cf343a0f16da27f031ab2cfb16c90159ac52691540873fe/pyxmolpp2-1.0.0.dev3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0.dev3 2025-09-08T14:53:01,997 Found link https://files.pythonhosted.org/packages/dd/96/b6aa5603b5f40b892572e42338b23a75a78c162ec958f75f429cc4d05f34/pyxmolpp2-1.0.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0 2025-09-08T14:53:01,997 Found link https://files.pythonhosted.org/packages/b6/4f/9e63388cb7670452069a038097371bd5c87ea665ea9f9cd2b3009498ab0f/pyxmolpp2-1.1.0.dev0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0.dev0 2025-09-08T14:53:01,997 Found link https://files.pythonhosted.org/packages/07/ef/f93acfeedd3cfd180366afa66c555ef0ad5f59daa22a023f7d56a37b3774/pyxmolpp2-1.1.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0 2025-09-08T14:53:01,997 Found link https://files.pythonhosted.org/packages/40/25/974e02ffd74a29b48d37f7ead5988c4fc31554ab2439361dbe6ade50df5c/pyxmolpp2-1.1.0.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0.post1 2025-09-08T14:53:01,998 Found link https://files.pythonhosted.org/packages/94/eb/8b82d34f5f0fff1ae0ee57db7bc01d5c582896a21aa6c23a0691f8dd2cef/pyxmolpp2-1.2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.2.0 2025-09-08T14:53:01,998 Found link https://files.pythonhosted.org/packages/8e/37/8e017030208308e0c9b96ab4799e06229a1bc3e30eb5931aa65d7bd44fc6/pyxmolpp2-1.3.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.3.0 2025-09-08T14:53:01,998 Found link https://files.pythonhosted.org/packages/69/d9/818b1d2533d74bbc1b571061bc6eadb3e8179ad45f98b996e2e752bbb8d7/pyxmolpp2-1.4.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.4.0 2025-09-08T14:53:01,998 Found link https://files.pythonhosted.org/packages/4b/7d/3a0beee575fc48b90d6685200925e081c9f00a80785f6c3399460f7a3a36/pyxmolpp2-1.5.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.0 2025-09-08T14:53:01,998 Found link https://files.pythonhosted.org/packages/5b/2a/67fff35be6b97a56c5c21823a7e98765379b83dfc6f1875e5282cbd85267/pyxmolpp2-1.5.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.2 2025-09-08T14:53:01,999 Found link https://files.pythonhosted.org/packages/ea/be/6ff70c774714c681459f089f77e92bbc13fb9bd068727404f525e4a3dbbb/pyxmolpp2-1.5.3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.3 2025-09-08T14:53:01,999 Found link https://files.pythonhosted.org/packages/13/09/0b0c1f7ed58aa7605854268f7eaeadafed70cded0855d450b93fbe278cc0/pyxmolpp2-1.6.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.6.0 2025-09-08T14:53:01,999 Found link https://files.pythonhosted.org/packages/43/af/adb175fd4c9a52ddfd9e943962e1da8810579bc4a0643db7bfff99b8f8cb/pyxmolpp2-2.0a0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0a0 2025-09-08T14:53:01,999 Found link https://files.pythonhosted.org/packages/bd/65/7f96775c57a613b95a7abae1956572a570e9e488d9bb0b05241338a72774/pyxmolpp2-2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0 2025-09-08T14:53:01,999 Found link https://files.pythonhosted.org/packages/5a/bc/01f71b18a8713194f43920fb0d89e7ae3c219abeb0efc734f0bf3303c86f/pyxmolpp2-2.0.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0.2 2025-09-08T14:53:02,000 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyxmolpp2/ 2025-09-08T14:53:02,000 Getting page https://www.piwheels.org/simple/pyxmolpp2/ 2025-09-08T14:53:02,001 Found index url https://www.piwheels.org/simple/ 2025-09-08T14:53:02,094 Fetched page https://www.piwheels.org/simple/pyxmolpp2/ as text/html 2025-09-08T14:53:02,095 Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp34-cp34m-linux_armv7l.whl#sha256=176920d3ec472d788331912a641cf8eb70e3eb87aac83c1e527ef33cdc152da6 (from https://www.piwheels.org/simple/pyxmolpp2/) 2025-09-08T14:53:02,095 Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp34-cp34m-linux_armv6l.whl#sha256=176920d3ec472d788331912a641cf8eb70e3eb87aac83c1e527ef33cdc152da6 (from https://www.piwheels.org/simple/pyxmolpp2/) 2025-09-08T14:53:02,096 Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=7f7fc7bce046e180693cc029132c8ab2ee085fd82c822f949a0e7852b96e50e0 (from https://www.piwheels.org/simple/pyxmolpp2/) 2025-09-08T14:53:02,096 Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=7f7fc7bce046e180693cc029132c8ab2ee085fd82c822f949a0e7852b96e50e0 (from https://www.piwheels.org/simple/pyxmolpp2/) 2025-09-08T14:53:02,096 Skipping link: not a file: https://www.piwheels.org/simple/pyxmolpp2/ 2025-09-08T14:53:02,096 Skipping link: not a file: https://pypi.org/simple/pyxmolpp2/ 2025-09-08T14:53:02,123 Given no hashes to check 1 links for project 'pyxmolpp2': discarding no candidates 2025-09-08T14:53:02,124 Collecting pyxmolpp2==0.4.0 2025-09-08T14:53:02,126 Created temporary directory: /tmp/pip-unpack-3y64yaxi 2025-09-08T14:53:02,410 Downloading pyxmolpp2-0.4.0.tar.gz (4.6 MB) 2025-09-08T14:53:05,195 Added pyxmolpp2==0.4.0 from https://files.pythonhosted.org/packages/db/70/90e7913b6629f135ab3f8dcfae9c428aaf311e981db0caada01f51c8751a/pyxmolpp2-0.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-0sbdphu3' 2025-09-08T14:53:05,196 Running setup.py (path:/tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f/setup.py) egg_info for package pyxmolpp2 2025-09-08T14:53:05,196 Created temporary directory: /tmp/pip-pip-egg-info-pxaun0xe 2025-09-08T14:53:05,196 Preparing metadata (setup.py): started 2025-09-08T14:53:05,197 Running command python setup.py egg_info 2025-09-08T14:53:05,913 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T14:53:05,913 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T14:53:06,374 running egg_info 2025-09-08T14:53:06,451 creating /tmp/pip-pip-egg-info-pxaun0xe/pyxmolpp2.egg-info 2025-09-08T14:53:06,452 writing /tmp/pip-pip-egg-info-pxaun0xe/pyxmolpp2.egg-info/PKG-INFO 2025-09-08T14:53:06,453 writing dependency_links to /tmp/pip-pip-egg-info-pxaun0xe/pyxmolpp2.egg-info/dependency_links.txt 2025-09-08T14:53:06,454 writing top-level names to /tmp/pip-pip-egg-info-pxaun0xe/pyxmolpp2.egg-info/top_level.txt 2025-09-08T14:53:06,455 writing manifest file '/tmp/pip-pip-egg-info-pxaun0xe/pyxmolpp2.egg-info/SOURCES.txt' 2025-09-08T14:53:06,603 reading manifest file '/tmp/pip-pip-egg-info-pxaun0xe/pyxmolpp2.egg-info/SOURCES.txt' 2025-09-08T14:53:06,604 reading manifest template 'MANIFEST.in' 2025-09-08T14:53:06,976 warning: no files found matching '.' 2025-09-08T14:53:06,977 warning: no files found matching '.' 2025-09-08T14:53:06,978 warning: no files found matching '.' 2025-09-08T14:53:06,984 warning: no previously-included files matching '.git' found anywhere in distribution 2025-09-08T14:53:06,990 warning: no previously-included files matching '.js' found anywhere in distribution 2025-09-08T14:53:06,996 warning: no previously-included files matching '.html' found anywhere in distribution 2025-09-08T14:53:07,002 warning: no previously-included files matching '.png' found anywhere in distribution 2025-09-08T14:53:07,008 warning: no previously-included files matching '.dox' found anywhere in distribution 2025-09-08T14:53:07,098 writing manifest file '/tmp/pip-pip-egg-info-pxaun0xe/pyxmolpp2.egg-info/SOURCES.txt' 2025-09-08T14:53:07,213 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T14:53:07,217 Source in /tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f has version 0.4.0, which satisfies requirement pyxmolpp2==0.4.0 from https://files.pythonhosted.org/packages/db/70/90e7913b6629f135ab3f8dcfae9c428aaf311e981db0caada01f51c8751a/pyxmolpp2-0.4.0.tar.gz 2025-09-08T14:53:07,218 Removed pyxmolpp2==0.4.0 from https://files.pythonhosted.org/packages/db/70/90e7913b6629f135ab3f8dcfae9c428aaf311e981db0caada01f51c8751a/pyxmolpp2-0.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-0sbdphu3' 2025-09-08T14:53:07,221 Created temporary directory: /tmp/pip-unpack-gcv7rwhq 2025-09-08T14:53:07,221 Created temporary directory: /tmp/pip-unpack-o_5_aeip 2025-09-08T14:53:07,221 Building wheels for collected packages: pyxmolpp2 2025-09-08T14:53:07,222 Created temporary directory: /tmp/pip-wheel-53m_ryhx 2025-09-08T14:53:07,223 DEPRECATION: Building 'pyxmolpp2' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyxmolpp2'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T14:53:07,224 Building wheel for pyxmolpp2 (setup.py): started 2025-09-08T14:53:07,225 Destination directory: /tmp/pip-wheel-53m_ryhx 2025-09-08T14:53:07,225 Running command python setup.py bdist_wheel 2025-09-08T14:53:07,920 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T14:53:07,921 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T14:53:08,295 running bdist_wheel 2025-09-08T14:53:08,594 running build 2025-09-08T14:53:08,595 running build_ext 2025-09-08T14:53:08,644 /tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f/setup.py:27: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. 2025-09-08T14:53:08,644 cmake_version = LooseVersion(re.search(r'version\s*([\d.]+)', out.decode()).group(1)) 2025-09-08T14:53:08,644 /tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f/setup.py:28: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. 2025-09-08T14:53:08,645 if cmake_version < LooseVersion('3.5.0'): 2025-09-08T14:53:08,688 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): 2025-09-08T14:53:08,688 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T14:53:08,688 CMake. 2025-09-08T14:53:08,689 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T14:53:08,689 to tell CMake that the project requires at least but has been updated 2025-09-08T14:53:08,689 to work with policies introduced by or earlier. 2025-09-08T14:53:08,936 -- The C compiler identification is GNU 14.2.0 2025-09-08T14:53:09,236 -- The CXX compiler identification is GNU 14.2.0 2025-09-08T14:53:09,278 -- Detecting C compiler ABI info 2025-09-08T14:53:09,701 -- Detecting C compiler ABI info - done 2025-09-08T14:53:09,771 -- Check for working C compiler: /usr/bin/cc - skipped 2025-09-08T14:53:09,773 -- Detecting C compile features 2025-09-08T14:53:09,775 -- Detecting C compile features - done 2025-09-08T14:53:09,840 -- Detecting CXX compiler ABI info 2025-09-08T14:53:10,308 -- Detecting CXX compiler ABI info - done 2025-09-08T14:53:10,380 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2025-09-08T14:53:10,381 -- Detecting CXX compile features 2025-09-08T14:53:10,385 -- Detecting CXX compile features - done 2025-09-08T14:53:10,419 CMake Warning (dev) at CMakeLists.txt:8 (find_package): 2025-09-08T14:53:10,419 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-08T14:53:10,419 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-08T14:53:10,419 the cmake_policy command to set the policy and suppress this warning. 2025-09-08T14:53:10,420 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-08T14:53:10,488 -- Found PythonInterp: /usr/bin/python3 (found version "3.13.5") 2025-09-08T14:53:10,489 CMake Warning (dev) at CMakeLists.txt:9 (find_package): 2025-09-08T14:53:10,489 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-08T14:53:10,489 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-08T14:53:10,489 the cmake_policy command to set the policy and suppress this warning. 2025-09-08T14:53:10,489 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-08T14:53:10,512 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.13.so (found suitable version "3.13.5", minimum required is "3.13") 2025-09-08T14:53:10,512 Using default python version: 3.13.5 2025-09-08T14:53:10,513 DONT USE COVERAGE PROFILE 2025-09-08T14:53:10,515 CMake Deprecation Warning at external/googletest/CMakeLists.txt:1 (cmake_minimum_required): 2025-09-08T14:53:10,515 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T14:53:10,515 CMake. 2025-09-08T14:53:10,515 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T14:53:10,516 to tell CMake that the project requires at least but has been updated 2025-09-08T14:53:10,516 to work with policies introduced by or earlier. 2025-09-08T14:53:10,532 CMake Deprecation Warning at external/googletest/googlemock/CMakeLists.txt:42 (cmake_minimum_required): 2025-09-08T14:53:10,532 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T14:53:10,532 CMake. 2025-09-08T14:53:10,532 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T14:53:10,532 to tell CMake that the project requires at least but has been updated 2025-09-08T14:53:10,532 to work with policies introduced by or earlier. 2025-09-08T14:53:10,535 CMake Deprecation Warning at external/googletest/googletest/CMakeLists.txt:49 (cmake_minimum_required): 2025-09-08T14:53:10,535 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T14:53:10,535 CMake. 2025-09-08T14:53:10,536 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T14:53:10,536 to tell CMake that the project requires at least but has been updated 2025-09-08T14:53:10,536 to work with policies introduced by or earlier. 2025-09-08T14:53:10,537 CMake Warning (dev) at external/googletest/googletest/cmake/internal_utils.cmake:239 (find_package): 2025-09-08T14:53:10,537 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-08T14:53:10,537 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-08T14:53:10,537 the cmake_policy command to set the policy and suppress this warning. 2025-09-08T14:53:10,538 Call Stack (most recent call first): 2025-09-08T14:53:10,538 external/googletest/googletest/CMakeLists.txt:84 (include) 2025-09-08T14:53:10,538 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-08T14:53:10,612 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2025-09-08T14:53:11,092 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success 2025-09-08T14:53:11,098 -- Found Threads: TRUE 2025-09-08T14:53:11,124 CMake Deprecation Warning at external/pybind11/CMakeLists.txt:8 (cmake_minimum_required): 2025-09-08T14:53:11,124 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T14:53:11,125 CMake. 2025-09-08T14:53:11,125 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T14:53:11,125 to tell CMake that the project requires at least but has been updated 2025-09-08T14:53:11,125 to work with policies introduced by or earlier. 2025-09-08T14:53:11,126 CMake Deprecation Warning at external/pybind11/tools/pybind11Tools.cmake:8 (cmake_minimum_required): 2025-09-08T14:53:11,126 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T14:53:11,126 CMake. 2025-09-08T14:53:11,126 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T14:53:11,126 to tell CMake that the project requires at least but has been updated 2025-09-08T14:53:11,126 to work with policies introduced by or earlier. 2025-09-08T14:53:11,126 Call Stack (most recent call first): 2025-09-08T14:53:11,126 external/pybind11/CMakeLists.txt:33 (include) 2025-09-08T14:53:11,127 CMake Warning (dev) at external/pybind11/tools/FindPythonLibsNew.cmake:60 (find_package): 2025-09-08T14:53:11,127 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-08T14:53:11,127 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-08T14:53:11,127 the cmake_policy command to set the policy and suppress this warning. 2025-09-08T14:53:11,127 Call Stack (most recent call first): 2025-09-08T14:53:11,127 external/pybind11/tools/pybind11Tools.cmake:16 (find_package) 2025-09-08T14:53:11,128 external/pybind11/CMakeLists.txt:33 (include) 2025-09-08T14:53:11,128 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-08T14:53:11,795 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.13.so 2025-09-08T14:53:11,816 -- pybind11 v2.3.dev0 2025-09-08T14:53:11,819 selectionTestsSources 2025-09-08T14:53:11,820 polymerTestsSources 2025-09-08T14:53:11,820 pdbTestsSources 2025-09-08T14:53:11,821 trjtoolTestsSources 2025-09-08T14:53:11,822 geometryTestsSources 2025-09-08T14:53:11,822 crystalTestsSources 2025-09-08T14:53:11,827 CMake Error at WriteVersionInfo.cmake:15 (message): 2025-09-08T14:53:11,827 message called with incorrect number of arguments 2025-09-08T14:53:11,827 Call Stack (most recent call first): 2025-09-08T14:53:11,827 CMakeLists.txt:53 (include) 2025-09-08T14:53:11,840 -- Performing Test HAS_FLTO 2025-09-08T14:53:12,500 -- Performing Test HAS_FLTO - Success 2025-09-08T14:53:12,500 -- LTO enabled 2025-09-08T14:53:12,503 -- Configuring incomplete, errors occurred! 2025-09-08T14:53:12,527 Traceback (most recent call last): 2025-09-08T14:53:12,533 File "", line 2, in 2025-09-08T14:53:12,533 exec(compile(''' 2025-09-08T14:53:12,533 ~~~~^^^^^^^^^^^^ 2025-09-08T14:53:12,534 # This is -- a caller that pip uses to run setup.py 2025-09-08T14:53:12,534 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T14:53:12,534 ...<32 lines>... 2025-09-08T14:53:12,534 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T14:53:12,534 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T14:53:12,534 ''' % ('/tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f/setup.py',), "", "exec")) 2025-09-08T14:53:12,534 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T14:53:12,534 File "", line 35, in 2025-09-08T14:53:12,535 File "/tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f/setup.py", line 67, in 2025-09-08T14:53:12,535 setup( 2025-09-08T14:53:12,535 ~~~~~^ 2025-09-08T14:53:12,535 name='pyxmolpp2', 2025-09-08T14:53:12,535 ^^^^^^^^^^^^^^^^^ 2025-09-08T14:53:12,535 ...<9 lines>... 2025-09-08T14:53:12,535 zip_safe=False, 2025-09-08T14:53:12,535 ^^^^^^^^^^^^^^^ 2025-09-08T14:53:12,536 ) 2025-09-08T14:53:12,536 ^ 2025-09-08T14:53:12,536 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T14:53:12,536 return distutils.core.setup(**attrs) 2025-09-08T14:53:12,536 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:53:12,536 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T14:53:12,536 return run_commands(dist) 2025-09-08T14:53:12,536 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T14:53:12,536 dist.run_commands() 2025-09-08T14:53:12,537 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T14:53:12,537 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T14:53:12,537 self.run_command(cmd) 2025-09-08T14:53:12,537 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T14:53:12,537 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T14:53:12,537 super().run_command(command) 2025-09-08T14:53:12,537 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:53:12,537 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T14:53:12,538 cmd_obj.run() 2025-09-08T14:53:12,538 ~~~~~~~~~~~^^ 2025-09-08T14:53:12,538 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T14:53:12,538 self.run_command("build") 2025-09-08T14:53:12,538 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:53:12,538 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T14:53:12,538 self.distribution.run_command(command) 2025-09-08T14:53:12,538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:53:12,538 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T14:53:12,539 super().run_command(command) 2025-09-08T14:53:12,539 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:53:12,539 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T14:53:12,539 cmd_obj.run() 2025-09-08T14:53:12,539 ~~~~~~~~~~~^^ 2025-09-08T14:53:12,539 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T14:53:12,539 self.run_command(cmd_name) 2025-09-08T14:53:12,540 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T14:53:12,540 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T14:53:12,540 self.distribution.run_command(command) 2025-09-08T14:53:12,540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:53:12,540 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T14:53:12,540 super().run_command(command) 2025-09-08T14:53:12,540 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T14:53:12,541 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T14:53:12,541 cmd_obj.run() 2025-09-08T14:53:12,541 ~~~~~~~~~~~^^ 2025-09-08T14:53:12,541 File "/tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f/setup.py", line 32, in run 2025-09-08T14:53:12,541 self.build_extension(ext) 2025-09-08T14:53:12,541 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T14:53:12,541 File "/tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f/setup.py", line 60, in build_extension 2025-09-08T14:53:12,542 subprocess.check_call(['cmake', ext.sourcedir] + cmake_args, cwd=self.build_temp, env=env) 2025-09-08T14:53:12,542 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T14:53:12,542 File "/usr/lib/python3.13/subprocess.py", line 419, in check_call 2025-09-08T14:53:12,542 raise CalledProcessError(retcode, cmd) 2025-09-08T14:53:12,542 subprocess.CalledProcessError: Command '['cmake', '/tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f', '-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f/build/lib.linux-armv7l-cpython-313', '-DPYTHON_EXECUTABLE=/usr/bin/python3', '-DCMAKE_BUILD_WITH_INSTALL_RPATH=TRUE', '-DCMAKE_INSTALL_RPATH=$ORIGIN', '-DCMAKE_BUILD_TYPE=Release']' returned non-zero exit status 1. 2025-09-08T14:53:12,648 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T14:53:12,660 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T14:53:12,660 exec(compile('"'"''"'"''"'"' 2025-09-08T14:53:12,660 # This is -- a caller that pip uses to run setup.py 2025-09-08T14:53:12,660 # 2025-09-08T14:53:12,660 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T14:53:12,660 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T14:53:12,660 # - It provides a clear error message when setuptools is not installed. 2025-09-08T14:53:12,660 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T14:53:12,660 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T14:53:12,660 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T14:53:12,660 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T14:53:12,660 import os, sys, tokenize, traceback 2025-09-08T14:53:12,660 2025-09-08T14:53:12,660 try: 2025-09-08T14:53:12,660 import setuptools 2025-09-08T14:53:12,660 except ImportError: 2025-09-08T14:53:12,660 print( 2025-09-08T14:53:12,660 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T14:53:12,660 "the build environment with exception:", 2025-09-08T14:53:12,660 file=sys.stderr, 2025-09-08T14:53:12,660 ) 2025-09-08T14:53:12,660 traceback.print_exc() 2025-09-08T14:53:12,660 sys.exit(1) 2025-09-08T14:53:12,660 2025-09-08T14:53:12,660 __file__ = %r 2025-09-08T14:53:12,660 sys.argv[0] = __file__ 2025-09-08T14:53:12,660 2025-09-08T14:53:12,660 if os.path.exists(__file__): 2025-09-08T14:53:12,660 filename = __file__ 2025-09-08T14:53:12,660 with tokenize.open(__file__) as f: 2025-09-08T14:53:12,660 setup_py_code = f.read() 2025-09-08T14:53:12,660 else: 2025-09-08T14:53:12,660 filename = "" 2025-09-08T14:53:12,660 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T14:53:12,660 2025-09-08T14:53:12,660 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T14:53:12,660 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-53m_ryhx[/] 2025-09-08T14:53:12,661 [bold magenta]cwd[/]: /tmp/pip-wheel-lmgrovvy/pyxmolpp2_eac88b824d7041dd9a8ee05e30b9d19f/ 2025-09-08T14:53:12,661 Building wheel for pyxmolpp2 (setup.py): finished with status 'error' 2025-09-08T14:53:12,661 ERROR: Failed building wheel for pyxmolpp2 2025-09-08T14:53:12,662 Running setup.py clean for pyxmolpp2 2025-09-08T14:53:12,663 Running command python setup.py clean 2025-09-08T14:53:13,368 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T14:53:13,368 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T14:53:13,813 running clean 2025-09-08T14:53:13,959 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T14:53:13,962 'build/lib.linux-armv7l-cpython-313' does not exist -- can't clean it 2025-09-08T14:53:13,962 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T14:53:13,962 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T14:53:13,963 removing 'build' 2025-09-08T14:53:14,074 Failed to build pyxmolpp2 2025-09-08T14:53:14,075 ERROR: Failed to build one or more wheels 2025-09-08T14:53:14,076 Exception information: 2025-09-08T14:53:14,076 Traceback (most recent call last): 2025-09-08T14:53:14,076 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T14:53:14,076 status = _inner_run() 2025-09-08T14:53:14,076 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T14:53:14,076 return self.run(options, args) 2025-09-08T14:53:14,076 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T14:53:14,076 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T14:53:14,076 return func(self, options, args) 2025-09-08T14:53:14,076 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T14:53:14,076 raise CommandError("Failed to build one or more wheels") 2025-09-08T14:53:14,076 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T14:53:14,080 Removed build tracker: '/tmp/pip-build-tracker-0sbdphu3'