2025-09-08T15:36:23,809 Created temporary directory: /tmp/pip-build-tracker-xwns0s6m 2025-09-08T15:36:23,810 Initialized build tracking at /tmp/pip-build-tracker-xwns0s6m 2025-09-08T15:36:23,810 Created build tracker: /tmp/pip-build-tracker-xwns0s6m 2025-09-08T15:36:23,810 Entered build tracker: /tmp/pip-build-tracker-xwns0s6m 2025-09-08T15:36:23,810 Created temporary directory: /tmp/pip-wheel-1ttar9xf 2025-09-08T15:36:23,813 Created temporary directory: /tmp/pip-ephem-wheel-cache-sc0qq3_b 2025-09-08T15:36:23,870 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T15:36:23,872 2 location(s) to search for versions of scikit-bio: 2025-09-08T15:36:23,872 * https://pypi.org/simple/scikit-bio/ 2025-09-08T15:36:23,872 * https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T15:36:23,873 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2025-09-08T15:36:23,873 Getting page https://pypi.org/simple/scikit-bio/ 2025-09-08T15:36:23,874 Found index url https://pypi.org/simple/ 2025-09-08T15:36:23,956 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2025-09-08T15:36:23,963 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2025-09-08T15:36:23,963 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2025-09-08T15:36:23,963 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2025-09-08T15:36:23,964 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2025-09-08T15:36:23,964 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2025-09-08T15:36:23,964 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2025-09-08T15:36:23,964 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2025-09-08T15:36:23,965 Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.1 2025-09-08T15:36:23,965 Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.2 2025-09-08T15:36:23,965 Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.3 2025-09-08T15:36:23,965 Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.0 2025-09-08T15:36:23,965 Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.1 2025-09-08T15:36:23,966 Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.2 2025-09-08T15:36:23,966 Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip (from https://pypi.org/simple/scikit-bio/), version: 0.5.0 2025-09-08T15:36:23,966 Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.1 2025-09-08T15:36:23,966 Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2025-09-08T15:36:23,967 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2025-09-08T15:36:23,967 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2025-09-08T15:36:23,967 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2025-09-08T15:36:23,967 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2025-09-08T15:36:23,967 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2025-09-08T15:36:23,968 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2025-09-08T15:36:23,968 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2025-09-08T15:36:23,968 Found link https://files.pythonhosted.org/packages/9d/77/531cf69c99cb398c5abf8545259b88ee256bfdb72e5972bcfdbcb9942751/scikit-bio-0.6.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.0 2025-09-08T15:36:23,968 Found link https://files.pythonhosted.org/packages/12/6b/1a01f3df88503d9a11916972f0b0c2aed13d516f159336b4bdcfcd04098a/scikit-bio-0.6.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.1 2025-09-08T15:36:23,969 Found link https://files.pythonhosted.org/packages/29/28/07326aa931c67d491d3053e2875b6c8f2904e661d9ab7c2840c3ae6b3780/scikit-bio-0.6.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.2 2025-09-08T15:36:23,969 Found link https://files.pythonhosted.org/packages/65/59/31e499edc0d045acab799b7117130e9c9de22371be57ac311f2f0b235dc4/scikit-bio-0.6.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.3 2025-09-08T15:36:23,969 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/59/8b/f90ee0325c7f59573bdf8d4a5a5717ca710f067a081fd46f3768600a200d/scikit_bio-0.7.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,969 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/57/c6/0864476e63935459eb4d474f210e70ca1b0aa9689bb1beccbeae582587ce/scikit_bio-0.7.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,969 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/ca/087675f3fd6608142be8c53e6875a1a730e0fa1250a85421677570445839/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,969 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c8/69/da203001d9a0d4f2dc14426617e5eed76c9ff059f6c2a94023bf48e204cb/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,970 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/45/97/3b928b1f075a6033326244e125f0e3a518fe75c17278359d1835ca4ccb24/scikit_bio-0.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,970 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3d/66/5f238ff8fa25080d5baf82287297bfd1e6dbeab45ef3ff1b0f6e1a7c017e/scikit_bio-0.7.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,970 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f9/8b/8ef6e40a818067bdaf57fa779eadbc8ef73f333dbd50fb09daeae13de1f2/scikit_bio-0.7.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,970 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f0/66/6cb6e9ba1e67f65a27b34fcd33b457cb0fea73f93dc184ea1bf38562f012/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,970 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/27/e359f131018cf988f1e4f5e7380db7db43ba4202ffc9ba9e8f6cfb1988f5/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,970 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/db/99/6b0ce81f81e2cfe06c899455b149e7f8393cd3ba9a8905efe18c36894420/scikit_bio-0.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,970 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/43/9b/bf339d439568a4fa0ab6e7e545c4487b1cf86e6245f98be0d922f4677ddc/scikit_bio-0.7.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,971 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1d/e9/7a5dd2e04bbd361907f5a1942fa4b6aeecfa453801f4c047c55b51036df2/scikit_bio-0.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,971 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/19/4b/b63123cf09c3375fa90cbfc02febf32cc20429a49c03d71f37febed7c52d/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,971 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f5/02/b178ca48305a230e080732dd02233e0824b1a9b41b273acf2444de116be2/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,971 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/5f/a8/199cafe05bb77bf274f0a3db8f5199f4b2966db37589f9e5ec6a212c0b9c/scikit_bio-0.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,971 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d4/31/b943fcf7d4579b4751002ad9a48e62e9f0c7db542dd440f7e3e82f50f58b/scikit_bio-0.7.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,971 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e7/af/5f3452f0dce0f0a3c7ccb9f067e410b50a8d188c4fb56426f8785317333d/scikit_bio-0.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,971 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7d/20/ef1d2a8accb946cc31b5b987a46d197f69d1e89bab76b5e9cb4235a355f9/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,972 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1c/46/3f05eedb58e13c21f5ab7496e9735da2f008aa66038b268ea46138a3e48d/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,972 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/40/e9/2f7d72ef933e9328b929295ada98ad2c5fbdc5b3c6bd2f4d886f14d4f90a/scikit_bio-0.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,972 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b5/fa/3a7770c445111c6b957aba701887f22506faef8145965a6b9d2816cfd896/scikit_bio-0.7.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,972 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4e/07/e2a29ccbb31208c98ff2c7b61b00614885f781474891ebf249d85495e238/scikit_bio-0.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,972 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/89/15/829f7da8e5083f4d2e3dd1ef24faa6b32da2bf492547bd6d385e92fda127/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,972 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4a/34/687f9e4dc73e39a56277e2aa900577fccb3c99ef28a5acc5fc258028e2ac/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,973 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6c/a5/75fd40c8bf70836216fffe57bdd80c78959d5cc21c23927ada892b246f3d/scikit_bio-0.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T15:36:23,973 Found link https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9), version: 0.7.0 2025-09-08T15:36:23,974 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T15:36:23,974 Getting page https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T15:36:23,975 Found index url https://www.piwheels.org/simple/ 2025-09-08T15:36:24,064 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2025-09-08T15:36:24,072 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv6l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,073 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv7l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,073 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv6l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,073 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv7l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,073 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.2-cp39-cp39-linux_armv6l.whl#sha256=c11cd14b1aa68524f23fa412af6d5139f3023ac63212057c53649ce6a63da7b8 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,073 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.2-cp39-cp39-linux_armv7l.whl#sha256=c11cd14b1aa68524f23fa412af6d5139f3023ac63212057c53649ce6a63da7b8 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,073 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp311-cp311-linux_armv6l.whl#sha256=7657b22d76cf0c3a508f91d921cbfc5431049f4477456d8b26c9a24a9ebb7190 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,074 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp311-cp311-linux_armv7l.whl#sha256=7657b22d76cf0c3a508f91d921cbfc5431049f4477456d8b26c9a24a9ebb7190 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,074 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp37-cp37m-linux_armv6l.whl#sha256=2dfb82a5726354b8f83f298206e3c08373a5c7502bcd2d68eba605d3d7a63398 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,074 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=2dfb82a5726354b8f83f298206e3c08373a5c7502bcd2d68eba605d3d7a63398 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,074 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,074 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,075 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv6l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,075 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv7l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,075 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,075 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,075 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,075 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,075 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,076 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,076 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,076 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,076 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv6l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,076 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv7l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,076 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,076 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,077 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,077 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,077 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,077 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,077 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,077 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,078 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,078 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T15:36:24,078 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T15:36:24,078 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2025-09-08T15:36:24,105 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2025-09-08T15:36:24,106 Collecting scikit-bio==0.5.5 2025-09-08T15:36:24,108 Created temporary directory: /tmp/pip-unpack-x3vck451 2025-09-08T15:36:24,663 Downloading scikit-bio-0.5.5.tar.gz (8.3 MB) 2025-09-08T15:36:26,495 Added scikit-bio==0.5.5 from https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz to build tracker '/tmp/pip-build-tracker-xwns0s6m' 2025-09-08T15:36:26,496 Running setup.py (path:/tmp/pip-wheel-1ttar9xf/scikit-bio_9d39a96484614f57964df0fa1a8b4feb/setup.py) egg_info for package scikit-bio 2025-09-08T15:36:26,497 Created temporary directory: /tmp/pip-pip-egg-info-1glno5_o 2025-09-08T15:36:26,497 Preparing metadata (setup.py): started 2025-09-08T15:36:26,498 Running command python setup.py egg_info 2025-09-08T15:36:27,430 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T15:36:27,431 warnings.warn(msg) 2025-09-08T15:36:27,824 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T15:36:27,824 !! 2025-09-08T15:36:27,825 ******************************************************************************** 2025-09-08T15:36:27,825 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T15:36:27,825 License :: OSI Approved :: BSD License 2025-09-08T15:36:27,825 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T15:36:27,825 ******************************************************************************** 2025-09-08T15:36:27,825 !! 2025-09-08T15:36:27,825 self._finalize_license_expression() 2025-09-08T15:36:27,899 running egg_info 2025-09-08T15:36:27,975 creating /tmp/pip-pip-egg-info-1glno5_o/scikit_bio.egg-info 2025-09-08T15:36:27,975 writing /tmp/pip-pip-egg-info-1glno5_o/scikit_bio.egg-info/PKG-INFO 2025-09-08T15:36:27,976 writing dependency_links to /tmp/pip-pip-egg-info-1glno5_o/scikit_bio.egg-info/dependency_links.txt 2025-09-08T15:36:27,977 writing requirements to /tmp/pip-pip-egg-info-1glno5_o/scikit_bio.egg-info/requires.txt 2025-09-08T15:36:27,977 writing top-level names to /tmp/pip-pip-egg-info-1glno5_o/scikit_bio.egg-info/top_level.txt 2025-09-08T15:36:27,978 writing manifest file '/tmp/pip-pip-egg-info-1glno5_o/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T15:36:28,326 reading manifest file '/tmp/pip-pip-egg-info-1glno5_o/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T15:36:28,327 reading manifest template 'MANIFEST.in' 2025-09-08T15:36:28,352 no previously-included directories found matching 'doc/build' 2025-09-08T15:36:28,354 no previously-included directories found matching 'doc/source/generated' 2025-09-08T15:36:28,357 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-09-08T15:36:28,361 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-09-08T15:36:28,364 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-09-08T15:36:28,367 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2025-09-08T15:36:28,370 warning: no previously-included files matching '.coverage' found anywhere in distribution 2025-09-08T15:36:28,371 adding license file 'COPYING.txt' 2025-09-08T15:36:28,399 writing manifest file '/tmp/pip-pip-egg-info-1glno5_o/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T15:36:28,536 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T15:36:28,541 Source in /tmp/pip-wheel-1ttar9xf/scikit-bio_9d39a96484614f57964df0fa1a8b4feb has version 0.5.5, which satisfies requirement scikit-bio==0.5.5 from https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz 2025-09-08T15:36:28,542 Removed scikit-bio==0.5.5 from https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz from build tracker '/tmp/pip-build-tracker-xwns0s6m' 2025-09-08T15:36:28,549 Created temporary directory: /tmp/pip-unpack-5l4fwow1 2025-09-08T15:36:28,549 Created temporary directory: /tmp/pip-unpack-vookkir4 2025-09-08T15:36:28,549 Building wheels for collected packages: scikit-bio 2025-09-08T15:36:28,550 Created temporary directory: /tmp/pip-wheel-ybu5luxu 2025-09-08T15:36:28,551 DEPRECATION: Building 'scikit-bio' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'scikit-bio'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T15:36:28,552 Building wheel for scikit-bio (setup.py): started 2025-09-08T15:36:28,553 Destination directory: /tmp/pip-wheel-ybu5luxu 2025-09-08T15:36:28,553 Running command python setup.py bdist_wheel 2025-09-08T15:36:29,459 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T15:36:29,459 warnings.warn(msg) 2025-09-08T15:36:29,855 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T15:36:29,856 !! 2025-09-08T15:36:29,856 ******************************************************************************** 2025-09-08T15:36:29,856 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T15:36:29,856 License :: OSI Approved :: BSD License 2025-09-08T15:36:29,856 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T15:36:29,856 ******************************************************************************** 2025-09-08T15:36:29,857 !! 2025-09-08T15:36:29,857 self._finalize_license_expression() 2025-09-08T15:36:29,857 running bdist_wheel 2025-09-08T15:36:30,223 running build 2025-09-08T15:36:30,223 running build_py 2025-09-08T15:36:30,300 creating build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T15:36:30,301 copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T15:36:30,302 copying skbio/test.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T15:36:30,302 copying skbio/_base.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T15:36:30,303 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T15:36:30,303 creating build/lib.linux-armv7l-cpython-313/benchmarks 2025-09-08T15:36:30,304 copying benchmarks/benchmarks.py -> build/lib.linux-armv7l-cpython-313/benchmarks 2025-09-08T15:36:30,304 copying benchmarks/__init__.py -> build/lib.linux-armv7l-cpython-313/benchmarks 2025-09-08T15:36:30,305 creating build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T15:36:30,305 copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T15:36:30,306 copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T15:36:30,306 copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T15:36:30,307 copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T15:36:30,307 copying skbio/util/_decorator.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T15:36:30,308 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T15:36:30,309 creating build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T15:36:30,309 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T15:36:30,310 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T15:36:30,310 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T15:36:30,311 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T15:36:30,311 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T15:36:30,312 creating build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T15:36:30,313 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T15:36:30,313 copying skbio/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T15:36:30,314 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T15:36:30,314 creating build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T15:36:30,315 copying skbio/stats/power.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T15:36:30,315 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T15:36:30,316 copying skbio/stats/composition.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T15:36:30,317 copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T15:36:30,317 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T15:36:30,318 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T15:36:30,319 creating build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,319 copying skbio/sequence/distance.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,319 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,320 copying skbio/sequence/_rna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,321 copying skbio/sequence/_repr.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,321 copying skbio/sequence/_protein.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,322 copying skbio/sequence/_nucleotide_mixin.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,323 copying skbio/sequence/_grammared_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,323 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,324 copying skbio/sequence/_dna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,324 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T15:36:30,325 creating build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T15:36:30,326 copying skbio/metadata/_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T15:36:30,326 copying skbio/metadata/_repr.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T15:36:30,327 copying skbio/metadata/_mixin.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T15:36:30,327 copying skbio/metadata/_interval.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T15:36:30,328 copying skbio/metadata/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T15:36:30,329 creating build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T15:36:30,329 copying skbio/io/util.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T15:36:30,330 copying skbio/io/registry.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T15:36:30,330 copying skbio/io/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T15:36:30,331 copying skbio/io/_iosources.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T15:36:30,331 copying skbio/io/_fileobject.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T15:36:30,332 copying skbio/io/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T15:36:30,332 copying skbio/io/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T15:36:30,333 creating build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T15:36:30,334 copying skbio/diversity/_util.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T15:36:30,334 copying skbio/diversity/_driver.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T15:36:30,335 copying skbio/diversity/_block.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T15:36:30,335 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T15:36:30,336 creating build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T15:36:30,336 copying skbio/alignment/_tabular_msa.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T15:36:30,337 copying skbio/alignment/_repr.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T15:36:30,338 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T15:36:30,338 copying skbio/alignment/_indexing.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T15:36:30,339 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T15:36:30,340 creating build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T15:36:30,340 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T15:36:30,341 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T15:36:30,341 copying skbio/util/tests/test_decorator.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T15:36:30,342 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T15:36:30,343 creating build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T15:36:30,343 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T15:36:30,344 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T15:36:30,344 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T15:36:30,345 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T15:36:30,345 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T15:36:30,346 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T15:36:30,346 copying skbio/stats/tests/test_power.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T15:36:30,347 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T15:36:30,347 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T15:36:30,348 copying skbio/stats/tests/test_composition.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T15:36:30,349 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T15:36:30,350 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T15:36:30,350 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T15:36:30,351 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T15:36:30,351 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T15:36:30,352 copying skbio/stats/ordination/_ordination_results.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T15:36:30,352 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T15:36:30,353 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T15:36:30,353 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T15:36:30,354 creating build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T15:36:30,354 copying skbio/stats/evolve/_hommola.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T15:36:30,355 copying skbio/stats/evolve/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T15:36:30,356 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T15:36:30,356 copying skbio/stats/distance/_permdisp.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T15:36:30,357 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T15:36:30,357 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T15:36:30,358 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T15:36:30,358 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T15:36:30,359 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T15:36:30,359 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T15:36:30,360 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T15:36:30,361 copying skbio/stats/ordination/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T15:36:30,361 copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T15:36:30,362 copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T15:36:30,362 copying skbio/stats/ordination/tests/test_ordination_results.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T15:36:30,363 copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T15:36:30,364 copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T15:36:30,364 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T15:36:30,365 creating build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T15:36:30,365 copying skbio/stats/evolve/tests/test_hommola.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T15:36:30,366 copying skbio/stats/evolve/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T15:36:30,366 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T15:36:30,367 copying skbio/stats/distance/tests/test_permdisp.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T15:36:30,367 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T15:36:30,368 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T15:36:30,368 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T15:36:30,369 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T15:36:30,370 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T15:36:30,370 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T15:36:30,371 creating build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T15:36:30,371 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T15:36:30,372 copying skbio/sequence/tests/test_rna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T15:36:30,373 copying skbio/sequence/tests/test_protein.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T15:36:30,373 copying skbio/sequence/tests/test_nucleotide_sequences.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T15:36:30,374 copying skbio/sequence/tests/test_grammared_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T15:36:30,375 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T15:36:30,375 copying skbio/sequence/tests/test_dna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T15:36:30,376 copying skbio/sequence/tests/test_distance.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T15:36:30,376 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T15:36:30,377 creating build/lib.linux-armv7l-cpython-313/skbio/metadata/tests 2025-09-08T15:36:30,377 copying skbio/metadata/tests/test_mixin.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata/tests 2025-09-08T15:36:30,378 copying skbio/metadata/tests/test_interval.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata/tests 2025-09-08T15:36:30,379 copying skbio/metadata/tests/test_intersection.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata/tests 2025-09-08T15:36:30,379 copying skbio/metadata/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/metadata/tests 2025-09-08T15:36:30,380 creating build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T15:36:30,380 copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T15:36:30,381 copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T15:36:30,382 copying skbio/io/tests/test_iosources.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T15:36:30,382 copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T15:36:30,383 creating build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,383 copying skbio/io/format/stockholm.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,384 copying skbio/io/format/qseq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,385 copying skbio/io/format/phylip.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,385 copying skbio/io/format/ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,386 copying skbio/io/format/newick.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,386 copying skbio/io/format/lsmat.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,387 copying skbio/io/format/gff3.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,388 copying skbio/io/format/genbank.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,388 copying skbio/io/format/fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,389 copying skbio/io/format/fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,390 copying skbio/io/format/emptyfile.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,390 copying skbio/io/format/embl.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,391 copying skbio/io/format/clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,391 copying skbio/io/format/blast7.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,392 copying skbio/io/format/blast6.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,393 copying skbio/io/format/_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,394 copying skbio/io/format/_blast.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,394 copying skbio/io/format/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,395 copying skbio/io/format/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T15:36:30,396 creating build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,396 copying skbio/io/format/tests/test_stockholm.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,397 copying skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,397 copying skbio/io/format/tests/test_qseq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,398 copying skbio/io/format/tests/test_phylip.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,398 copying skbio/io/format/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,399 copying skbio/io/format/tests/test_newick.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,399 copying skbio/io/format/tests/test_lsmat.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,400 copying skbio/io/format/tests/test_gff3.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,400 copying skbio/io/format/tests/test_genbank.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,401 copying skbio/io/format/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,402 copying skbio/io/format/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,402 copying skbio/io/format/tests/test_emptyfile.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,403 copying skbio/io/format/tests/test_embl.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,404 copying skbio/io/format/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,404 copying skbio/io/format/tests/test_blast7.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,405 copying skbio/io/format/tests/test_blast6.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,405 copying skbio/io/format/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,406 copying skbio/io/format/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T15:36:30,406 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T15:36:30,407 copying skbio/diversity/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T15:36:30,407 copying skbio/diversity/tests/test_driver.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T15:36:30,408 copying skbio/diversity/tests/test_block.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T15:36:30,409 copying skbio/diversity/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T15:36:30,409 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T15:36:30,409 copying skbio/diversity/beta/_unifrac.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T15:36:30,410 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T15:36:30,411 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T15:36:30,411 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T15:36:30,412 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T15:36:30,412 copying skbio/diversity/alpha/_faith_pd.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T15:36:30,413 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T15:36:30,413 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T15:36:30,414 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T15:36:30,415 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T15:36:30,415 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T15:36:30,416 copying skbio/diversity/beta/tests/test_unifrac.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T15:36:30,416 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T15:36:30,417 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T15:36:30,417 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T15:36:30,418 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T15:36:30,418 copying skbio/diversity/alpha/tests/test_faith_pd.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T15:36:30,419 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T15:36:30,419 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T15:36:30,420 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T15:36:30,420 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T15:36:30,421 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T15:36:30,421 copying skbio/alignment/tests/test_tabular_msa.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T15:36:30,423 copying skbio/alignment/tests/test_ssw.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T15:36:30,423 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T15:36:30,424 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T15:36:30,425 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/_lib 2025-09-08T15:36:30,425 copying skbio/alignment/_lib/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/_lib 2025-09-08T15:36:30,455 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,456 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,456 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,457 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,457 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,458 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,458 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,459 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,459 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,460 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,460 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,461 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,461 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T15:36:30,462 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,463 copying skbio/stats/ordination/tests/data/varespec.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,463 copying skbio/stats/ordination/tests/data/varechem.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,464 copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,464 copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,465 copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,465 copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,466 copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,466 copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,467 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,467 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,468 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,469 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,469 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,470 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,470 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,471 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,471 copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,472 copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,472 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,473 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,473 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,474 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,474 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,475 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,476 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,476 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,477 copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,477 copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,478 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,478 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,479 copying skbio/stats/ordination/tests/data/PCoA_skbio -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,479 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,480 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,481 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,481 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,482 copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,482 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,483 copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,483 copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,484 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T15:36:30,484 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,484 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,485 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,486 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,486 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,487 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,487 copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,488 copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,488 copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,489 copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,489 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,490 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,490 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,491 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,491 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,492 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,493 copying skbio/stats/distance/tests/data/dm4.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,493 copying skbio/stats/distance/tests/data/dm3.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,494 copying skbio/stats/distance/tests/data/dm2.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,494 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,495 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,495 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,496 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,496 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,497 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T15:36:30,497 creating build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T15:36:30,497 copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T15:36:30,498 copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T15:36:30,499 copying skbio/io/tests/data/example_file.gz -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T15:36:30,499 copying skbio/io/tests/data/example_file.bz2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T15:36:30,500 copying skbio/io/tests/data/example_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T15:36:30,500 copying skbio/io/tests/data/big5_file.gz -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T15:36:30,501 copying skbio/io/tests/data/big5_file.bz2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T15:36:30,501 copying skbio/io/tests/data/big5_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T15:36:30,502 creating build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,502 copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,502 copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,503 copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,503 copying skbio/io/format/tests/data/whitespace_only -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,504 copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,504 copying skbio/io/format/tests/data/tsv_10_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,505 copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,505 copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,506 copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,507 copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,507 copying skbio/io/format/tests/data/stockholm_single_reference -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,508 copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,508 copying skbio/io/format/tests/data/stockholm_runon_references -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,509 copying skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,509 copying skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,510 copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,510 copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,511 copying skbio/io/format/tests/data/stockholm_rna -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,511 copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,512 copying skbio/io/format/tests/data/stockholm_no_data -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,512 copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,513 copying skbio/io/format/tests/data/stockholm_multiple_references -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,513 copying skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,514 copying skbio/io/format/tests/data/stockholm_multiple_msa -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,514 copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,515 copying skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,515 copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,516 copying skbio/io/format/tests/data/stockholm_missing_reference_items -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,516 copying skbio/io/format/tests/data/stockholm_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,517 copying skbio/io/format/tests/data/stockholm_missing_footer -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,517 copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,518 copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,518 copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,519 copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,519 copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,520 copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,521 copying skbio/io/format/tests/data/stockholm_malformed_data_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,521 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,522 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,522 copying skbio/io/format/tests/data/stockholm_invalid_data_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,523 copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,523 copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,524 copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,524 copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,525 copying skbio/io/format/tests/data/stockholm_duplicate_gr -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,525 copying skbio/io/format/tests/data/stockholm_duplicate_gc -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,526 copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,526 copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,527 copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,527 copying skbio/io/format/tests/data/stockholm_different_padding -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,528 copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,528 copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,529 copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,529 copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,530 copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,530 copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,531 copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,531 copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,532 copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,532 copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,533 copying skbio/io/format/tests/data/qual_single_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,533 copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,534 copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,534 copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,535 copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,535 copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,536 copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,536 copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,537 copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,537 copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,538 copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,538 copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,539 copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,539 copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,540 copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,540 copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,541 copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,542 copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,542 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,543 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,544 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,544 copying skbio/io/format/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,545 copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,545 copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,546 copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,546 copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,547 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,547 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,548 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,548 copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,549 copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,549 copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,550 copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,550 copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,551 copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,551 copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,552 copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,552 copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,553 copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,553 copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,554 copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,554 copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,555 copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,555 copying skbio/io/format/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,556 copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,556 copying skbio/io/format/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,557 copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,557 copying skbio/io/format/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,558 copying skbio/io/format/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,558 copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,559 copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,559 copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,560 copying skbio/io/format/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,560 copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,561 copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,561 copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,562 copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,563 copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,563 copying skbio/io/format/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,564 copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,564 copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,565 copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,565 copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,566 copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,566 copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,567 copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,567 copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,568 copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,568 copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,569 copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,569 copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,570 copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,570 copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,571 copying skbio/io/format/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,571 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,572 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,572 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,573 copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,573 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,574 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,574 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,575 copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,575 copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,576 copying skbio/io/format/tests/data/ordination_error9 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,576 copying skbio/io/format/tests/data/ordination_error8 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,577 copying skbio/io/format/tests/data/ordination_error7 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,577 copying skbio/io/format/tests/data/ordination_error6 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,578 copying skbio/io/format/tests/data/ordination_error5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,578 copying skbio/io/format/tests/data/ordination_error4 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,579 copying skbio/io/format/tests/data/ordination_error3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,580 copying skbio/io/format/tests/data/ordination_error24 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,580 copying skbio/io/format/tests/data/ordination_error23 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,581 copying skbio/io/format/tests/data/ordination_error22 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,581 copying skbio/io/format/tests/data/ordination_error21 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,582 copying skbio/io/format/tests/data/ordination_error20 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,582 copying skbio/io/format/tests/data/ordination_error2 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,583 copying skbio/io/format/tests/data/ordination_error19 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,583 copying skbio/io/format/tests/data/ordination_error18 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,584 copying skbio/io/format/tests/data/ordination_error17 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,584 copying skbio/io/format/tests/data/ordination_error16 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,585 copying skbio/io/format/tests/data/ordination_error15 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,585 copying skbio/io/format/tests/data/ordination_error14 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,586 copying skbio/io/format/tests/data/ordination_error13 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,586 copying skbio/io/format/tests/data/ordination_error12 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,587 copying skbio/io/format/tests/data/ordination_error11 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,587 copying skbio/io/format/tests/data/ordination_error10 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,588 copying skbio/io/format/tests/data/ordination_error1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,588 copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,589 copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,589 copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,590 copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,590 copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,591 copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,592 copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,592 copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,593 copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,593 copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,594 copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,595 copying skbio/io/format/tests/data/legacy9_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,595 copying skbio/io/format/tests/data/legacy9_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,596 copying skbio/io/format/tests/data/legacy9_mixed_nans -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,596 copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,597 copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,597 copying skbio/io/format/tests/data/legacy9_and_blast7_default -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,598 copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,598 copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,599 copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,599 copying skbio/io/format/tests/data/gff3_single_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,600 copying skbio/io/format/tests/data/gff3_multi_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,600 copying skbio/io/format/tests/data/gff3_dna -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,601 copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,601 copying skbio/io/format/tests/data/gff3_bad_missing_directive -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,602 copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,602 copying skbio/io/format/tests/data/genbank_single_record_upper -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,603 copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,603 copying skbio/io/format/tests/data/genbank_single_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,604 copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,604 copying skbio/io/format/tests/data/genbank_missing_locus_name -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,605 copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,606 copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,606 copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,607 copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,607 copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,608 copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,608 copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,609 copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,609 copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,610 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,610 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,611 copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,611 copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,612 copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,612 copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,613 copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,613 copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,614 copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,614 copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,615 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,615 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,616 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,616 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,617 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,617 copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,618 copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,618 copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,619 copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,619 copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,620 copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,620 copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,621 copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,621 copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,622 copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,623 copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,623 copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,624 copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,624 copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,625 copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,625 copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,626 copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,626 copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,627 copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,627 copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,628 copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,628 copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,629 copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,629 copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,630 copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,630 copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,631 copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,631 copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,632 copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,633 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,633 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,634 copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,634 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,635 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,635 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,636 copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,636 copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,637 copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,637 copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,638 copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,638 copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,639 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,639 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,640 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,641 copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,641 copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,642 copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,642 copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,643 copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,643 copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,644 copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,644 copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,645 copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,645 copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,646 copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,646 copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,647 copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,647 copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,648 copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,648 copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,649 copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,649 copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,650 copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,650 copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,651 copying skbio/io/format/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,651 copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,652 copying skbio/io/format/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,652 copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,653 copying skbio/io/format/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,653 copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,654 copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,654 copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,655 copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,656 copying skbio/io/format/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,656 copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,657 copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,657 copying skbio/io/format/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,658 copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,658 copying skbio/io/format/tests/data/empty -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,659 copying skbio/io/format/tests/data/embl_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,659 copying skbio/io/format/tests/data/embl_uniprot_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,660 copying skbio/io/format/tests/data/embl_single_record_upper -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,660 copying skbio/io/format/tests/data/embl_single_record_simple -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,661 copying skbio/io/format/tests/data/embl_single_record_lower -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,661 copying skbio/io/format/tests/data/embl_single_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,662 copying skbio/io/format/tests/data/embl_multi_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,662 copying skbio/io/format/tests/data/embl_feature_level_record_no_FT -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,663 copying skbio/io/format/tests/data/embl_feature_level_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,663 copying skbio/io/format/tests/data/embl_constructed -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,664 copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,664 copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,665 copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,665 copying skbio/io/format/tests/data/blast7_invalid_gibberish -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,666 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,666 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,667 copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,667 copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,668 copying skbio/io/format/tests/data/blast7_default_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,668 copying skbio/io/format/tests/data/blast7_custom_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,669 copying skbio/io/format/tests/data/blast7_custom_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,669 copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,670 copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,670 copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,671 copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,672 copying skbio/io/format/tests/data/blast6_invalid_column_types -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,672 copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,673 copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,673 copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,674 copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,674 copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,675 copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T15:36:30,675 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T15:36:30,676 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T15:36:30,676 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T15:36:30,677 copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T15:36:30,677 copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T15:36:30,678 copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T15:36:30,678 copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T15:36:30,679 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T15:36:30,679 copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T15:36:30,680 copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T15:36:30,680 copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T15:36:30,681 copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T15:36:30,690 running build_ext 2025-09-08T15:36:31,046 building 'skbio.metadata._intersection' extension 2025-09-08T15:36:31,047 creating build/temp.linux-armv7l-cpython-313/skbio/metadata 2025-09-08T15:36:31,047 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c skbio/metadata/_intersection.c -o build/temp.linux-armv7l-cpython-313/skbio/metadata/_intersection.o 2025-09-08T15:36:31,415 skbio/metadata/_intersection.c:49:12: fatal error: longintrepr.h: No such file or directory 2025-09-08T15:36:31,415 49 | #include "longintrepr.h" 2025-09-08T15:36:31,415 | ^~~~~~~~~~~~~~~ 2025-09-08T15:36:31,415 compilation terminated. 2025-09-08T15:36:31,419 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T15:36:31,595 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T15:36:31,607 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T15:36:31,607 exec(compile('"'"''"'"''"'"' 2025-09-08T15:36:31,607 # This is -- a caller that pip uses to run setup.py 2025-09-08T15:36:31,607 # 2025-09-08T15:36:31,607 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T15:36:31,607 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T15:36:31,607 # - It provides a clear error message when setuptools is not installed. 2025-09-08T15:36:31,607 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T15:36:31,607 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T15:36:31,607 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T15:36:31,607 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T15:36:31,607 import os, sys, tokenize, traceback 2025-09-08T15:36:31,607 2025-09-08T15:36:31,607 try: 2025-09-08T15:36:31,607 import setuptools 2025-09-08T15:36:31,607 except ImportError: 2025-09-08T15:36:31,607 print( 2025-09-08T15:36:31,607 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T15:36:31,607 "the build environment with exception:", 2025-09-08T15:36:31,607 file=sys.stderr, 2025-09-08T15:36:31,607 ) 2025-09-08T15:36:31,607 traceback.print_exc() 2025-09-08T15:36:31,607 sys.exit(1) 2025-09-08T15:36:31,607 2025-09-08T15:36:31,607 __file__ = %r 2025-09-08T15:36:31,607 sys.argv[0] = __file__ 2025-09-08T15:36:31,607 2025-09-08T15:36:31,607 if os.path.exists(__file__): 2025-09-08T15:36:31,607 filename = __file__ 2025-09-08T15:36:31,607 with tokenize.open(__file__) as f: 2025-09-08T15:36:31,607 setup_py_code = f.read() 2025-09-08T15:36:31,607 else: 2025-09-08T15:36:31,607 filename = "" 2025-09-08T15:36:31,607 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T15:36:31,607 2025-09-08T15:36:31,607 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T15:36:31,607 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-1ttar9xf/scikit-bio_9d39a96484614f57964df0fa1a8b4feb/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-ybu5luxu[/] 2025-09-08T15:36:31,607 [bold magenta]cwd[/]: /tmp/pip-wheel-1ttar9xf/scikit-bio_9d39a96484614f57964df0fa1a8b4feb/ 2025-09-08T15:36:31,607 Building wheel for scikit-bio (setup.py): finished with status 'error' 2025-09-08T15:36:31,608 ERROR: Failed building wheel for scikit-bio 2025-09-08T15:36:31,609 Running setup.py clean for scikit-bio 2025-09-08T15:36:31,610 Running command python setup.py clean 2025-09-08T15:36:32,539 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T15:36:32,539 warnings.warn(msg) 2025-09-08T15:36:32,938 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T15:36:32,938 !! 2025-09-08T15:36:32,939 ******************************************************************************** 2025-09-08T15:36:32,939 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T15:36:32,939 License :: OSI Approved :: BSD License 2025-09-08T15:36:32,939 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T15:36:32,939 ******************************************************************************** 2025-09-08T15:36:32,939 !! 2025-09-08T15:36:32,939 self._finalize_license_expression() 2025-09-08T15:36:33,015 running clean 2025-09-08T15:36:33,161 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T15:36:33,161 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T15:36:33,183 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T15:36:33,183 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T15:36:33,183 removing 'build' 2025-09-08T15:36:33,320 Failed to build scikit-bio 2025-09-08T15:36:33,321 ERROR: Failed to build one or more wheels 2025-09-08T15:36:33,322 Exception information: 2025-09-08T15:36:33,322 Traceback (most recent call last): 2025-09-08T15:36:33,322 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T15:36:33,322 status = _inner_run() 2025-09-08T15:36:33,322 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T15:36:33,322 return self.run(options, args) 2025-09-08T15:36:33,322 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T15:36:33,322 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T15:36:33,322 return func(self, options, args) 2025-09-08T15:36:33,322 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T15:36:33,322 raise CommandError("Failed to build one or more wheels") 2025-09-08T15:36:33,322 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T15:36:33,326 Removed build tracker: '/tmp/pip-build-tracker-xwns0s6m'