2025-09-08T16:02:29,210 Created temporary directory: /tmp/pip-build-tracker-svqicvz5
2025-09-08T16:02:29,211 Initialized build tracking at /tmp/pip-build-tracker-svqicvz5
2025-09-08T16:02:29,211 Created build tracker: /tmp/pip-build-tracker-svqicvz5
2025-09-08T16:02:29,211 Entered build tracker: /tmp/pip-build-tracker-svqicvz5
2025-09-08T16:02:29,211 Created temporary directory: /tmp/pip-wheel-3ahgdjs_
2025-09-08T16:02:29,214 Created temporary directory: /tmp/pip-ephem-wheel-cache-jxaeggv4
2025-09-08T16:02:29,275 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T16:02:29,277 2 location(s) to search for versions of transvar:
2025-09-08T16:02:29,277 * https://pypi.org/simple/transvar/
2025-09-08T16:02:29,277 * https://www.piwheels.org/simple/transvar/
2025-09-08T16:02:29,277 Fetching project page and analyzing links: https://pypi.org/simple/transvar/
2025-09-08T16:02:29,278 Getting page https://pypi.org/simple/transvar/
2025-09-08T16:02:29,279 Found index url https://pypi.org/simple/
2025-09-08T16:02:29,351 Fetched page https://pypi.org/simple/transvar/ as application/vnd.pypi.simple.v1+json
2025-09-08T16:02:29,356   Found link https://files.pythonhosted.org/packages/08/6c/f47d5c1b30408e08f19c5fbe42e03f57a234057fe1dd4c82a2e908a38a73/TransVar-2.2.3.20160407.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.3.20160407
2025-09-08T16:02:29,356   Found link https://files.pythonhosted.org/packages/2c/44/b95ffb8f13d8bb611c15adacdcf61cf24e51685cd193b2a1769270183e14/TransVar-2.2.4.20160407.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.4.20160407
2025-09-08T16:02:29,356   Found link https://files.pythonhosted.org/packages/d2/5c/083e2ec87dbae164c1ba791cd88f7a14473859980e3f5775a88cb9f18c8d/TransVar-2.2.5.20160408.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.5.20160408
2025-09-08T16:02:29,357   Found link https://files.pythonhosted.org/packages/2b/7b/f71bd04791a21d7c6c51ed2801b53cfde506c57fcaaa90eff0c0b96cc4bc/TransVar-2.2.6.20160427.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.6.20160427
2025-09-08T16:02:29,357   Found link https://files.pythonhosted.org/packages/bb/a1/1dd7275f4a930448d1e66a40cc720e505b7cce8dae450dfbc0b73b6fe391/TransVar-2.2.7.20160427.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.7.20160427
2025-09-08T16:02:29,357   Found link https://files.pythonhosted.org/packages/d3/df/680fb4f9e32967ef2beb3fdc548eea6f6496eeb25f673f5c4e4c5ed22ef8/TransVar-2.2.8.20160502.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.8.20160502
2025-09-08T16:02:29,357   Found link https://files.pythonhosted.org/packages/87/4c/00f096288e5b2636dc7cf2a49ea6465649734cfddde6698ee315d2fc5b4a/TransVar-2.2.9.20160503.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.9.20160503
2025-09-08T16:02:29,357   Found link https://files.pythonhosted.org/packages/ee/0f/b340f49b44ef2d0fe305c4e4f44b393a44af7d64e5d6ccc9dc9464887e32/TransVar-2.2.10.20160512.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.10.20160512
2025-09-08T16:02:29,358   Found link https://files.pythonhosted.org/packages/57/b1/34e879cdcc60d291102d0634efbc6bcc588f8af5052009c8943a8755c968/TransVar-2.2.11.20160531.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.11.20160531
2025-09-08T16:02:29,358   Found link https://files.pythonhosted.org/packages/0e/e2/86c1e324c0af3086c36628c7b94caf19547b18560ea667d28825f8f57ae3/TransVar-2.2.12.20160723.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.12.20160723
2025-09-08T16:02:29,358   Found link https://files.pythonhosted.org/packages/d1/fe/a13f91f948c3e89d08e0a8acb2eadf0759cbc816a57456196736218b46ce/TransVar-2.2.13.20160723.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.13.20160723
2025-09-08T16:02:29,358   Found link https://files.pythonhosted.org/packages/fb/f4/02b249106131830b0bb00c0b10b15a10ded8f03077da8bccd72d2c8a7366/TransVar-2.2.14.20161002.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.14.20161002
2025-09-08T16:02:29,359   Found link https://files.pythonhosted.org/packages/9b/02/2d7ef5f0bbf746e2f4781ccb3d24822af377b188b9dbbee30cec829fa487/TransVar-2.2.15.20161002.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.15.20161002
2025-09-08T16:02:29,359   Found link https://files.pythonhosted.org/packages/19/d8/a0c36f428d8acca26cc8bce1f8aa79a7597db4f05c79c8d2943fe9b153fc/TransVar-2.3.0.20161007.tar.gz (from https://pypi.org/simple/transvar/), version: 2.3.0.20161007
2025-09-08T16:02:29,359   Found link https://files.pythonhosted.org/packages/5a/06/25e17459a69dfe3545ec60e9bcb25352c8b7507b69dcd7d91231b347362e/TransVar-2.3.1.20161012.tar.gz (from https://pypi.org/simple/transvar/), version: 2.3.1.20161012
2025-09-08T16:02:29,359   Found link https://files.pythonhosted.org/packages/ec/a4/7f39c4bdd55034793debeb843b84bb3a4a1772af2ad4853e233aa3bfae7b/TransVar-2.3.2.20161106.tar.gz (from https://pypi.org/simple/transvar/), version: 2.3.2.20161106
2025-09-08T16:02:29,359   Found link https://files.pythonhosted.org/packages/f0/28/2bd84a4700ef07a998e80e9ad09f7180f4758f68077d854a8541b6b31143/TransVar-2.3.3.20161203.tar.gz (from https://pypi.org/simple/transvar/), version: 2.3.3.20161203
2025-09-08T16:02:29,360   Found link https://files.pythonhosted.org/packages/bc/b3/a0c9a2edf84c397fbf5a6624ddec2f9f961c2b79e070589c361781257111/TransVar-2.3.4.20161215.tar.gz (from https://pypi.org/simple/transvar/), version: 2.3.4.20161215
2025-09-08T16:02:29,360   Found link https://files.pythonhosted.org/packages/5c/34/222a51489e07dcad5f29f78cee8e0f8e74b1b8b21cd7bb6d12dd2573129d/TransVar-2.4.0.20180701.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.0.20180701
2025-09-08T16:02:29,360   Found link https://files.pythonhosted.org/packages/06/41/dfa097486b76d3d8351d5fe4599e0b69ad71cfda1d739d8cd98faa4efaf6/TransVar-2.4.1.20180815.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.1.20180815
2025-09-08T16:02:29,360   Found link https://files.pythonhosted.org/packages/4b/a2/9a02c155404499b4baac5d5bc7fa994ca77101238e544967a6a612bebefb/TransVar-2.4.2.20181231.linux-x86_64.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.2.20181231.linux-x86_64
2025-09-08T16:02:29,360   Found link https://files.pythonhosted.org/packages/e3/2c/24dd2011bdbbae662607eaf3bb98dc4671d2ca97863adfbe1a0979e44b7c/TransVar-2.4.3.20181231.macosx-10.7-x86_64.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.3.20181231.macosx-10.7-x86_64
2025-09-08T16:02:29,361   Found link https://files.pythonhosted.org/packages/a8/00/d435ffe1c3ef6122be1c0b159b09844ea00e26c283a200ffeabd86b1b9e5/TransVar-2.4.5.20190121.linux-x86_64.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.5.20190121.linux-x86_64
2025-09-08T16:02:29,361   Found link https://files.pythonhosted.org/packages/e5/bb/05b86cb6a1785fefad9c6fa49647c2fca8a5af25622285bc9a7858d313fe/TransVar-2.4.6.20190121.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.6.20190121
2025-09-08T16:02:29,361   Found link https://files.pythonhosted.org/packages/b4/2a/981908e0b8034e128753a08697d1693342e35c262ac9801384db7c3f67dc/TransVar-2.4.7.20190122.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.7.20190122
2025-09-08T16:02:29,361   Found link https://files.pythonhosted.org/packages/59/c0/9367847eb7367bec582f0878a199f102667c7d16bd2a8fc74d1e750d2b28/TransVar-2.4.8.20190122.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.8.20190122
2025-09-08T16:02:29,362   Found link https://files.pythonhosted.org/packages/b4/07/5354a402238297ebc687a5a64df3acced1e8c7a550cb8366f0cc597728bd/TransVar-2.5.0.20190314.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.0.20190314
2025-09-08T16:02:29,362   Found link https://files.pythonhosted.org/packages/59/d6/2905c05c60e0d50545825a2cc6affafddb5d22ceea996c7d89c9cbad82de/TransVar-2.5.1.20190326.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.1.20190326
2025-09-08T16:02:29,362   Found link https://files.pythonhosted.org/packages/aa/ee/db5408c9dd1f8fda18cc47d4a59f8b6452a0b423036c11fb8094d3b8c4b1/TransVar-2.5.2.20190401.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.2.20190401
2025-09-08T16:02:29,362   Found link https://files.pythonhosted.org/packages/0f/d1/23d5e5144a7827d866608e83f2a50708a81fc0adf035399fbe2e3f27f269/TransVar-2.5.3.20190424.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.3.20190424
2025-09-08T16:02:29,362   Found link https://files.pythonhosted.org/packages/6b/0d/54c1aedb8dc212405906f0de57c59dc3b4886648f0778453ffc419fcb3ae/TransVar-2.5.4.20190424.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.4.20190424
2025-09-08T16:02:29,363   Found link https://files.pythonhosted.org/packages/00/53/c95a1a2ceb64819124d248268e47bb49f3083e7b7303579dc82fe7e8b63f/TransVar-2.5.5.20190430.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.5.20190430
2025-09-08T16:02:29,363   Found link https://files.pythonhosted.org/packages/98/75/2a931b2024578b9e983478b8e5dc9c8a97d17abd853d61764eebc8899c6a/TransVar-2.5.6.20190605.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.6.20190605
2025-09-08T16:02:29,363   Found link https://files.pythonhosted.org/packages/69/3b/ace0d9d8535fecba01f3ad0889616325acac49a14f48e88ad4f0fcae867b/TransVar-2.5.7.20190617.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.7.20190617
2025-09-08T16:02:29,363   Found link https://files.pythonhosted.org/packages/90/2a/c79f2efcef9d5d4ef7be668b76359baa7342ace17e5f864f5e3800c6b288/TransVar-2.5.8.20190813.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.8.20190813
2025-09-08T16:02:29,363   Found link https://files.pythonhosted.org/packages/99/89/e759694b24f6a9d74049e8dd66bd9194e54e4bb97effbca4c69dff9f9046/TransVar-2.5.9.20190830.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.9.20190830
2025-09-08T16:02:29,364   Found link https://files.pythonhosted.org/packages/b5/8d/7016d6a3488c2cfdfa5669c1f11ed6970d32eb2e3bbe9efad980d0a0b7e8/TransVar-2.5.10.20211024.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.10.20211024
2025-09-08T16:02:29,364 Fetching project page and analyzing links: https://www.piwheels.org/simple/transvar/
2025-09-08T16:02:29,364 Getting page https://www.piwheels.org/simple/transvar/
2025-09-08T16:02:29,365 Found index url https://www.piwheels.org/simple/
2025-09-08T16:02:29,452 Fetched page https://www.piwheels.org/simple/transvar/ as text/html
2025-09-08T16:02:29,452 Skipping link: not a file: https://www.piwheels.org/simple/transvar/
2025-09-08T16:02:29,453 Skipping link: not a file: https://pypi.org/simple/transvar/
2025-09-08T16:02:29,484 Given no hashes to check 1 links for project 'transvar': discarding no candidates
2025-09-08T16:02:29,485 Collecting transvar==2.4.6.20190121
2025-09-08T16:02:29,487   Created temporary directory: /tmp/pip-unpack-j3qket0i
2025-09-08T16:02:29,626   Downloading TransVar-2.4.6.20190121.tar.gz (141 kB)
2025-09-08T16:02:29,709   Added transvar==2.4.6.20190121 from https://files.pythonhosted.org/packages/e5/bb/05b86cb6a1785fefad9c6fa49647c2fca8a5af25622285bc9a7858d313fe/TransVar-2.4.6.20190121.tar.gz to build tracker '/tmp/pip-build-tracker-svqicvz5'
2025-09-08T16:02:29,710   Running setup.py (path:/tmp/pip-wheel-3ahgdjs_/transvar_6e099142a7064a93b3a4de98b536e4f2/setup.py) egg_info for package transvar
2025-09-08T16:02:29,711   Created temporary directory: /tmp/pip-pip-egg-info-1jad_vyp
2025-09-08T16:02:29,711   Preparing metadata (setup.py): started
2025-09-08T16:02:29,712   Running command python setup.py egg_info
2025-09-08T16:02:30,395   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T16:02:30,396   !!

2025-09-08T16:02:30,396           ********************************************************************************
2025-09-08T16:02:30,396           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T16:02:30,396           versions. Please use the underscore name 'description_file' instead.

2025-09-08T16:02:30,396           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T16:02:30,396           or your builds will no longer be supported.

2025-09-08T16:02:30,397           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T16:02:30,397           ********************************************************************************

2025-09-08T16:02:30,397   !!
2025-09-08T16:02:30,397     opt = self._enforce_underscore(opt, section)
2025-09-08T16:02:30,860   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T16:02:30,861   !!

2025-09-08T16:02:30,861           ********************************************************************************
2025-09-08T16:02:30,861           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T16:02:30,861           versions. Please use the underscore name 'description_file' instead.
2025-09-08T16:02:30,861           (Affected: TransVar).

2025-09-08T16:02:30,861           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T16:02:30,861           or your builds will no longer be supported.

2025-09-08T16:02:30,861           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T16:02:30,862           ********************************************************************************

2025-09-08T16:02:30,862   !!
2025-09-08T16:02:30,862     opt = self._enforce_underscore(opt, section)
2025-09-08T16:02:30,862   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T16:02:30,862   !!

2025-09-08T16:02:30,862           ********************************************************************************
2025-09-08T16:02:30,862           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T16:02:30,862           License :: OSI Approved :: MIT License

2025-09-08T16:02:30,863           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T16:02:30,863           ********************************************************************************

2025-09-08T16:02:30,863   !!
2025-09-08T16:02:30,863     self._finalize_license_expression()
2025-09-08T16:02:30,936   running egg_info
2025-09-08T16:02:31,011   creating /tmp/pip-pip-egg-info-1jad_vyp/TransVar.egg-info
2025-09-08T16:02:31,011   writing /tmp/pip-pip-egg-info-1jad_vyp/TransVar.egg-info/PKG-INFO
2025-09-08T16:02:31,012   writing dependency_links to /tmp/pip-pip-egg-info-1jad_vyp/TransVar.egg-info/dependency_links.txt
2025-09-08T16:02:31,013   writing requirements to /tmp/pip-pip-egg-info-1jad_vyp/TransVar.egg-info/requires.txt
2025-09-08T16:02:31,013   writing top-level names to /tmp/pip-pip-egg-info-1jad_vyp/TransVar.egg-info/top_level.txt
2025-09-08T16:02:31,013   writing manifest file '/tmp/pip-pip-egg-info-1jad_vyp/TransVar.egg-info/SOURCES.txt'
2025-09-08T16:02:31,314   reading manifest file '/tmp/pip-pip-egg-info-1jad_vyp/TransVar.egg-info/SOURCES.txt'
2025-09-08T16:02:31,315   reading manifest template 'MANIFEST.in'
2025-09-08T16:02:31,319   warning: no files found matching 'Makefile' under directory 'external'
2025-09-08T16:02:31,320   warning: no files found matching '*.mk' under directory 'external'
2025-09-08T16:02:31,321   warning: no files found matching 'configure' under directory 'external'
2025-09-08T16:02:31,322   warning: no files found matching 'config.mk.in' under directory 'external'
2025-09-08T16:02:31,325   writing manifest file '/tmp/pip-pip-egg-info-1jad_vyp/TransVar.egg-info/SOURCES.txt'
2025-09-08T16:02:31,439   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T16:02:31,444   Source in /tmp/pip-wheel-3ahgdjs_/transvar_6e099142a7064a93b3a4de98b536e4f2 has version 2.4.6.20190121, which satisfies requirement transvar==2.4.6.20190121 from https://files.pythonhosted.org/packages/e5/bb/05b86cb6a1785fefad9c6fa49647c2fca8a5af25622285bc9a7858d313fe/TransVar-2.4.6.20190121.tar.gz
2025-09-08T16:02:31,444   Removed transvar==2.4.6.20190121 from https://files.pythonhosted.org/packages/e5/bb/05b86cb6a1785fefad9c6fa49647c2fca8a5af25622285bc9a7858d313fe/TransVar-2.4.6.20190121.tar.gz from build tracker '/tmp/pip-build-tracker-svqicvz5'
2025-09-08T16:02:31,447 Created temporary directory: /tmp/pip-unpack-pj6xn51k
2025-09-08T16:02:31,447 Created temporary directory: /tmp/pip-unpack-i7lxgbl4
2025-09-08T16:02:31,448 Building wheels for collected packages: transvar
2025-09-08T16:02:31,449   Created temporary directory: /tmp/pip-wheel-13yuple0
2025-09-08T16:02:31,450   DEPRECATION: Building 'transvar' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'transvar'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T16:02:31,451   Building wheel for transvar (setup.py): started
2025-09-08T16:02:31,452   Destination directory: /tmp/pip-wheel-13yuple0
2025-09-08T16:02:31,452   Running command python setup.py bdist_wheel
2025-09-08T16:02:32,100   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T16:02:32,100   !!

2025-09-08T16:02:32,100           ********************************************************************************
2025-09-08T16:02:32,100           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T16:02:32,100           versions. Please use the underscore name 'description_file' instead.

2025-09-08T16:02:32,101           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T16:02:32,101           or your builds will no longer be supported.

2025-09-08T16:02:32,101           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T16:02:32,101           ********************************************************************************

2025-09-08T16:02:32,101   !!
2025-09-08T16:02:32,101     opt = self._enforce_underscore(opt, section)
2025-09-08T16:02:32,561   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T16:02:32,561   !!

2025-09-08T16:02:32,561           ********************************************************************************
2025-09-08T16:02:32,562           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T16:02:32,562           versions. Please use the underscore name 'description_file' instead.
2025-09-08T16:02:32,562           (Affected: TransVar).

2025-09-08T16:02:32,562           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T16:02:32,562           or your builds will no longer be supported.

2025-09-08T16:02:32,562           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T16:02:32,562           ********************************************************************************

2025-09-08T16:02:32,563   !!
2025-09-08T16:02:32,563     opt = self._enforce_underscore(opt, section)
2025-09-08T16:02:32,563   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T16:02:32,563   !!

2025-09-08T16:02:32,563           ********************************************************************************
2025-09-08T16:02:32,563           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T16:02:32,563           License :: OSI Approved :: MIT License

2025-09-08T16:02:32,563           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T16:02:32,564           ********************************************************************************

2025-09-08T16:02:32,564   !!
2025-09-08T16:02:32,564     self._finalize_license_expression()
2025-09-08T16:02:32,564   running bdist_wheel
2025-09-08T16:02:32,858   running build
2025-09-08T16:02:32,859   running build_py
2025-09-08T16:02:32,936   creating build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,937   copying transvar/version.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,937   copying transvar/utils.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,938   copying transvar/transcripts.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,939   copying transvar/snv.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,939   copying transvar/region.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,940   copying transvar/record.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,940   copying transvar/proteinseqs.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,941   copying transvar/parser.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,942   copying transvar/mutation.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,942   copying transvar/mnv.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,943   copying transvar/localdb.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,943   copying transvar/insertion.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,944   copying transvar/frameshift.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,945   copying transvar/faidx.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,945   copying transvar/err.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,946   copying transvar/describe.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,946   copying transvar/deletion.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,947   copying transvar/config.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,947   copying transvar/codonsearch.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,948   copying transvar/argparse.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,949   copying transvar/annodb.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,949   copying transvar/anno.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,950   copying transvar/__init__.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T16:02:32,950   creating build/lib.linux-armv7l-cpython-313/transvar/ssw
2025-09-08T16:02:32,951   copying transvar/ssw/__init__.py -> build/lib.linux-armv7l-cpython-313/transvar/ssw
2025-09-08T16:02:32,953   running build_ext
2025-09-08T16:02:33,280   building 'transvar.tabix' extension
2025-09-08T16:02:33,282   creating build/temp.linux-armv7l-cpython-313/external/pytabix
2025-09-08T16:02:33,283   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/bgzf.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/bgzf.o -w
2025-09-08T16:02:33,898   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/bgzip.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/bgzip.o -w
2025-09-08T16:02:34,293   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/index.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/index.o -w
2025-09-08T16:02:37,184   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/knetfile.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/knetfile.o -w
2025-09-08T16:02:37,961   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/kstring.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/kstring.o -w
2025-09-08T16:02:38,454   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/tabixmodule.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/tabixmodule.o -w
2025-09-08T16:02:39,053   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/external/pytabix/bgzf.o build/temp.linux-armv7l-cpython-313/external/pytabix/bgzip.o build/temp.linux-armv7l-cpython-313/external/pytabix/index.o build/temp.linux-armv7l-cpython-313/external/pytabix/knetfile.o build/temp.linux-armv7l-cpython-313/external/pytabix/kstring.o build/temp.linux-armv7l-cpython-313/external/pytabix/tabixmodule.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-313/transvar/tabix.cpython-313-arm-linux-gnueabihf.so
2025-09-08T16:02:39,182   building 'transvar.ssw._sswlib' extension
2025-09-08T16:02:39,182   creating build/temp.linux-armv7l-cpython-313/external/ssw
2025-09-08T16:02:39,183   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iexternal/ssw -I/usr/include/python3.13 -c external/ssw/encode.c -o build/temp.linux-armv7l-cpython-313/external/ssw/encode.o -W -Wall -O2 -finline-functions -fPIC -shared -Wl,-soname,sswlib
2025-09-08T16:02:39,319   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iexternal/ssw -I/usr/include/python3.13 -c external/ssw/ssw.c -o build/temp.linux-armv7l-cpython-313/external/ssw/ssw.o -W -Wall -O2 -finline-functions -fPIC -shared -Wl,-soname,sswlib
2025-09-08T16:02:39,370   external/ssw/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory
2025-09-08T16:02:39,370      38 | #include <emmintrin.h>
2025-09-08T16:02:39,370         |          ^~~~~~~~~~~~~
2025-09-08T16:02:39,370   compilation terminated.
2025-09-08T16:02:39,372   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2025-09-08T16:02:39,520   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T16:02:39,531   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T16:02:39,531   exec(compile('"'"''"'"''"'"'
2025-09-08T16:02:39,531   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T16:02:39,531   #
2025-09-08T16:02:39,531   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T16:02:39,531   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T16:02:39,531   # - It provides a clear error message when setuptools is not installed.
2025-09-08T16:02:39,531   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T16:02:39,531   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T16:02:39,531   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T16:02:39,531   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T16:02:39,531   import os, sys, tokenize, traceback
2025-09-08T16:02:39,531   
2025-09-08T16:02:39,531   try:
2025-09-08T16:02:39,531       import setuptools
2025-09-08T16:02:39,531   except ImportError:
2025-09-08T16:02:39,531       print(
2025-09-08T16:02:39,531           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T16:02:39,531           "the build environment with exception:",
2025-09-08T16:02:39,531           file=sys.stderr,
2025-09-08T16:02:39,531       )
2025-09-08T16:02:39,531       traceback.print_exc()
2025-09-08T16:02:39,531       sys.exit(1)
2025-09-08T16:02:39,531   
2025-09-08T16:02:39,531   __file__ = %r
2025-09-08T16:02:39,531   sys.argv[0] = __file__
2025-09-08T16:02:39,531   
2025-09-08T16:02:39,531   if os.path.exists(__file__):
2025-09-08T16:02:39,531       filename = __file__
2025-09-08T16:02:39,531       with tokenize.open(__file__) as f:
2025-09-08T16:02:39,531           setup_py_code = f.read()
2025-09-08T16:02:39,531   else:
2025-09-08T16:02:39,531       filename = "<auto-generated setuptools caller>"
2025-09-08T16:02:39,531       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T16:02:39,531   
2025-09-08T16:02:39,531   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T16:02:39,531   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-3ahgdjs_/transvar_6e099142a7064a93b3a4de98b536e4f2/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-13yuple0[/]
2025-09-08T16:02:39,532   [bold magenta]cwd[/]: /tmp/pip-wheel-3ahgdjs_/transvar_6e099142a7064a93b3a4de98b536e4f2/
2025-09-08T16:02:39,532   Building wheel for transvar (setup.py): finished with status 'error'
2025-09-08T16:02:39,532   ERROR: Failed building wheel for transvar
2025-09-08T16:02:39,533   Running setup.py clean for transvar
2025-09-08T16:02:39,534   Running command python setup.py clean
2025-09-08T16:02:40,144   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T16:02:40,144   !!

2025-09-08T16:02:40,145           ********************************************************************************
2025-09-08T16:02:40,145           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T16:02:40,145           versions. Please use the underscore name 'description_file' instead.

2025-09-08T16:02:40,145           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T16:02:40,145           or your builds will no longer be supported.

2025-09-08T16:02:40,145           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T16:02:40,145           ********************************************************************************

2025-09-08T16:02:40,145   !!
2025-09-08T16:02:40,146     opt = self._enforce_underscore(opt, section)
2025-09-08T16:02:40,601   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T16:02:40,602   !!

2025-09-08T16:02:40,602           ********************************************************************************
2025-09-08T16:02:40,602           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T16:02:40,602           versions. Please use the underscore name 'description_file' instead.
2025-09-08T16:02:40,602           (Affected: TransVar).

2025-09-08T16:02:40,602           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T16:02:40,602           or your builds will no longer be supported.

2025-09-08T16:02:40,603           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T16:02:40,603           ********************************************************************************

2025-09-08T16:02:40,603   !!
2025-09-08T16:02:40,603     opt = self._enforce_underscore(opt, section)
2025-09-08T16:02:40,603   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T16:02:40,603   !!

2025-09-08T16:02:40,603           ********************************************************************************
2025-09-08T16:02:40,603           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T16:02:40,604           License :: OSI Approved :: MIT License

2025-09-08T16:02:40,604           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T16:02:40,604           ********************************************************************************

2025-09-08T16:02:40,604   !!
2025-09-08T16:02:40,604     self._finalize_license_expression()
2025-09-08T16:02:40,676   running clean
2025-09-08T16:02:40,748   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T16:02:40,749   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T16:02:40,750   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T16:02:40,750   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T16:02:40,751   removing 'build'
2025-09-08T16:02:40,863 Failed to build transvar
2025-09-08T16:02:40,864 ERROR: Failed to build one or more wheels
2025-09-08T16:02:40,865 Exception information:
2025-09-08T16:02:40,865 Traceback (most recent call last):
2025-09-08T16:02:40,865   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T16:02:40,865     status = _inner_run()
2025-09-08T16:02:40,865   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T16:02:40,865     return self.run(options, args)
2025-09-08T16:02:40,865            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T16:02:40,865   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T16:02:40,865     return func(self, options, args)
2025-09-08T16:02:40,865   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T16:02:40,865     raise CommandError("Failed to build one or more wheels")
2025-09-08T16:02:40,865 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T16:02:40,869 Removed build tracker: '/tmp/pip-build-tracker-svqicvz5'