2025-09-08T16:21:46,714 Created temporary directory: /tmp/pip-build-tracker-mma6jqp6 2025-09-08T16:21:46,715 Initialized build tracking at /tmp/pip-build-tracker-mma6jqp6 2025-09-08T16:21:46,715 Created build tracker: /tmp/pip-build-tracker-mma6jqp6 2025-09-08T16:21:46,715 Entered build tracker: /tmp/pip-build-tracker-mma6jqp6 2025-09-08T16:21:46,715 Created temporary directory: /tmp/pip-wheel-fudpxnsv 2025-09-08T16:21:46,718 Created temporary directory: /tmp/pip-ephem-wheel-cache-z2nk81p_ 2025-09-08T16:21:46,775 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T16:21:46,777 2 location(s) to search for versions of camoco: 2025-09-08T16:21:46,777 * https://pypi.org/simple/camoco/ 2025-09-08T16:21:46,777 * https://www.piwheels.org/simple/camoco/ 2025-09-08T16:21:46,777 Fetching project page and analyzing links: https://pypi.org/simple/camoco/ 2025-09-08T16:21:46,778 Getting page https://pypi.org/simple/camoco/ 2025-09-08T16:21:46,779 Found index url https://pypi.org/simple/ 2025-09-08T16:21:46,848 Fetched page https://pypi.org/simple/camoco/ as application/vnd.pypi.simple.v1+json 2025-09-08T16:21:46,851 Found link https://files.pythonhosted.org/packages/43/41/d0d81fb45e70fbeb4eecd8a45e1cf580cd00221f41110291c9d81431051f/camoco-0.1.0.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.0 2025-09-08T16:21:46,851 Found link https://files.pythonhosted.org/packages/ac/2a/a2d57a86796705e676e89ba06ac5ca9d6031f8257d3d191fe1b62cb3e027/camoco-0.1.1.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.1 2025-09-08T16:21:46,851 Found link https://files.pythonhosted.org/packages/36/76/4ead6259156a34138d5a1470a6fffe90bf84060ecbf6ba24d35ff6444556/camoco-0.1.2.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.2 2025-09-08T16:21:46,851 Found link https://files.pythonhosted.org/packages/b8/39/ef06f826443955669d6b53c265239e080a7d419ab14e479fb2f0dc30e3a0/camoco-0.1.3.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.3 2025-09-08T16:21:46,851 Found link https://files.pythonhosted.org/packages/2f/89/053c4d7d7e219d10a8f79a57f55b054e3d2072597332a06dbc62f567ee59/camoco-0.1.4.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.4 2025-09-08T16:21:46,852 Found link https://files.pythonhosted.org/packages/1b/b1/231f9627750ca9cabee0762a3682cc2bb3f30650f6a8232d8e3af32a3823/camoco-0.1.5.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.5 2025-09-08T16:21:46,852 Found link https://files.pythonhosted.org/packages/fa/6e/370a6eff0d3fb9ff43b0ea5899a393ccca0773a5d0ced60193672a08ca9d/camoco-0.1.6.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.6 2025-09-08T16:21:46,852 Found link https://files.pythonhosted.org/packages/cb/99/3aeb19604c709bafd7be0564423b6d56ec9dbb608f9ec763b58faedf361c/camoco-0.1.7.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.7 2025-09-08T16:21:46,852 Found link https://files.pythonhosted.org/packages/86/b9/74946b1d3f0214e451528e29131ca23b99bbe78720b9981638d20838bfeb/camoco-0.1.8.tar.gz (from https://pypi.org/simple/camoco/), version: 0.1.8 2025-09-08T16:21:46,852 Found link https://files.pythonhosted.org/packages/52/a8/a249e717bcc0e09f6adfad9d9aefe49f58a611730cb5002c13ef8fa7ef55/camoco-0.6.0.tar.gz (from https://pypi.org/simple/camoco/), version: 0.6.0 2025-09-08T16:21:46,853 Found link https://files.pythonhosted.org/packages/89/1f/b09a750aad7666bc593123781cc284d610df777a4360f6f1bd8fb0d7ff27/camoco-0.6.1.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6), version: 0.6.1 2025-09-08T16:21:46,853 Found link https://files.pythonhosted.org/packages/93/58/a1a019531c166ea0c32326ff0cbb6e2c29b8b9550b3b52215facac02e214/camoco-0.6.2.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6), version: 0.6.2 2025-09-08T16:21:46,854 Link requires a different Python (3.13.5 not in: '>=3.6, <3.7'): https://files.pythonhosted.org/packages/23/0e/3616fbe340618546b8ddab8711e9f1442c2a9ff2ec315eb1cc9afd6d2123/camoco-0.6.3.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6, <3.7) 2025-09-08T16:21:46,854 Skipping link: 0.6.3 Requires-Python >=3.6, <3.7: https://files.pythonhosted.org/packages/23/0e/3616fbe340618546b8ddab8711e9f1442c2a9ff2ec315eb1cc9afd6d2123/camoco-0.6.3.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6, <3.7) 2025-09-08T16:21:46,855 Link requires a different Python (3.13.5 not in: '>=3.6,<3.8'): https://files.pythonhosted.org/packages/d6/cf/de367502c08f3d8e0573d22627ce777a358353beba4747adf88b06bf3eb6/camoco-0.6.4.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6,<3.8) 2025-09-08T16:21:46,855 Skipping link: 0.6.4 Requires-Python >=3.6,<3.8: https://files.pythonhosted.org/packages/d6/cf/de367502c08f3d8e0573d22627ce777a358353beba4747adf88b06bf3eb6/camoco-0.6.4.tar.gz (from https://pypi.org/simple/camoco/) (requires-python:>=3.6,<3.8) 2025-09-08T16:21:46,855 Fetching project page and analyzing links: https://www.piwheels.org/simple/camoco/ 2025-09-08T16:21:46,856 Getting page https://www.piwheels.org/simple/camoco/ 2025-09-08T16:21:46,857 Found index url https://www.piwheels.org/simple/ 2025-09-08T16:21:46,964 Fetched page https://www.piwheels.org/simple/camoco/ as text/html 2025-09-08T16:21:46,970 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.4-cp37-cp37m-linux_armv7l.whl#sha256=d0d0b425ed77e32a1170ae0f22bac78b5de2f610153004b71eaf2989f854fdab (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6,<3.8) 2025-09-08T16:21:46,970 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.4-cp37-cp37m-linux_armv6l.whl#sha256=d0d0b425ed77e32a1170ae0f22bac78b5de2f610153004b71eaf2989f854fdab (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6,<3.8) 2025-09-08T16:21:46,970 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp39-cp39-linux_armv6l.whl#sha256=ff1d8441751a2549de7aa0d0368f745f8c63fba7d2d7366dd4e73b665253d8f3 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6) 2025-09-08T16:21:46,970 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp39-cp39-linux_armv7l.whl#sha256=ff1d8441751a2549de7aa0d0368f745f8c63fba7d2d7366dd4e73b665253d8f3 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6) 2025-09-08T16:21:46,971 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp37-cp37m-linux_armv7l.whl#sha256=cfb087c1c8e4b1a4331967280b52f41407b3415dfc5bf26752e2afb94625aa01 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6) 2025-09-08T16:21:46,971 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.2-cp37-cp37m-linux_armv6l.whl#sha256=cfb087c1c8e4b1a4331967280b52f41407b3415dfc5bf26752e2afb94625aa01 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6) 2025-09-08T16:21:46,971 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=31da9a10bb2a019a258661a6d451e7fe7ccd0b23a600e420fa48b04f7ff7fb6e (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6) 2025-09-08T16:21:46,971 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=31da9a10bb2a019a258661a6d451e7fe7ccd0b23a600e420fa48b04f7ff7fb6e (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6) 2025-09-08T16:21:46,971 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=22f1d9fe682376c5496dd25093fc5301da2bcbed873914817bed44c851833935 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6) 2025-09-08T16:21:46,971 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.1-cp37-cp37m-linux_armv6l.whl#sha256=22f1d9fe682376c5496dd25093fc5301da2bcbed873914817bed44c851833935 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6) 2025-09-08T16:21:46,971 Skipping link: No binaries permitted for camoco: https://www.piwheels.org/simple/camoco/camoco-0.6.1-cp313-cp313-linux_armv6l.whl#sha256=1c7bb7cb996f76fb17a37cd9fcaf988a0534b3e22db18ab2ec4237e23f182a14 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6) 2025-09-08T16:21:46,972 Skipping link: No binaries permitted for camoco: https://www.piwheels.org/simple/camoco/camoco-0.6.1-cp313-cp313-linux_armv7l.whl#sha256=1c7bb7cb996f76fb17a37cd9fcaf988a0534b3e22db18ab2ec4237e23f182a14 (from https://www.piwheels.org/simple/camoco/) (requires-python:>=3.6) 2025-09-08T16:21:46,972 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=4bdafca9724ecc4955293e68bfabb83823855cd749021d49fb3f5067ce7d9228 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,972 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=4bdafca9724ecc4955293e68bfabb83823855cd749021d49fb3f5067ce7d9228 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,972 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=a26297be87d3fdc3fb8b04f6fb1efce22ff4ec448a71ffe1ea1777fbde91c38d (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,972 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=a26297be87d3fdc3fb8b04f6fb1efce22ff4ec448a71ffe1ea1777fbde91c38d (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,972 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp34-cp34m-linux_armv7l.whl#sha256=bd39032f6e2c4ad36305d2d15a002b9dfff2fa354c328011223157c158d2fc27 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,972 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp34-cp34m-linux_armv6l.whl#sha256=bd39032f6e2c4ad36305d2d15a002b9dfff2fa354c328011223157c158d2fc27 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,973 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp35-cp35m-linux_armv7l.whl#sha256=a21020956af128edb2dfe8f85c414242506215eca23728524734a2dbbc10e88b (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,973 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.6.0-cp35-cp35m-linux_armv6l.whl#sha256=a21020956af128edb2dfe8f85c414242506215eca23728524734a2dbbc10e88b (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,973 Skipping link: No binaries permitted for camoco: https://www.piwheels.org/simple/camoco/camoco-0.6.0-cp313-cp313-linux_armv6l.whl#sha256=4b0e87b52dcbc3a3fde80865045449d2efb291bb893528ae8650279816dc1a24 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,973 Skipping link: No binaries permitted for camoco: https://www.piwheels.org/simple/camoco/camoco-0.6.0-cp313-cp313-linux_armv7l.whl#sha256=4b0e87b52dcbc3a3fde80865045449d2efb291bb893528ae8650279816dc1a24 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,973 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.8-py3-none-any.whl#sha256=5967431750ad7d2a4e19fc2ef9be96146bd3528e08a55132b291e71c530a56a0 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,973 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.5-py3-none-any.whl#sha256=7d45165eef62a61d02b83b93c1dc453b4b19759fe246c5eb94d77a9a83da92bc (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,973 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.4-py3-none-any.whl#sha256=7b5981f5bb8d5863c7117c0f7b548062cd5298639a75db798e0dc947246d6a8f (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,974 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.3-py3-none-any.whl#sha256=9c6a8449c0225d9fda2378d3c0cffd7006eadc3df56d5fa2137dbd8359214b11 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,974 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.2-py3-none-any.whl#sha256=47efa56feee029688bcf6052bdcef369d49122b13433f0f697b995c1f3297ad1 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,974 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.1-py3-none-any.whl#sha256=86d86983f412f451a7bf2012297bd7671faf368a068fa95bc051211a8d575b37 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,974 Skipping link: No binaries permitted for camoco: https://archive1.piwheels.org/simple/camoco/camoco-0.1.0-py3-none-any.whl#sha256=ce68a7c5d9fb6c86b28f5c15eabe5ef3aacfdfba82e414b351efd1f0dab45621 (from https://www.piwheels.org/simple/camoco/) 2025-09-08T16:21:46,974 Skipping link: not a file: https://www.piwheels.org/simple/camoco/ 2025-09-08T16:21:46,974 Skipping link: not a file: https://pypi.org/simple/camoco/ 2025-09-08T16:21:47,001 Given no hashes to check 1 links for project 'camoco': discarding no candidates 2025-09-08T16:21:47,002 Collecting camoco==0.6.2 2025-09-08T16:21:47,003 Created temporary directory: /tmp/pip-unpack-4lxi78gj 2025-09-08T16:21:47,140 Downloading camoco-0.6.2.tar.gz (96 kB) 2025-09-08T16:21:47,205 Added camoco==0.6.2 from https://files.pythonhosted.org/packages/93/58/a1a019531c166ea0c32326ff0cbb6e2c29b8b9550b3b52215facac02e214/camoco-0.6.2.tar.gz to build tracker '/tmp/pip-build-tracker-mma6jqp6' 2025-09-08T16:21:47,206 Running setup.py (path:/tmp/pip-wheel-fudpxnsv/camoco_8887e0ae433e40289b2f3db08c5c30ee/setup.py) egg_info for package camoco 2025-09-08T16:21:47,206 Created temporary directory: /tmp/pip-pip-egg-info-ovoshgvb 2025-09-08T16:21:47,206 Preparing metadata (setup.py): started 2025-09-08T16:21:47,207 Running command python setup.py egg_info 2025-09-08T16:21:48,055 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T16:21:48,055 !! 2025-09-08T16:21:48,056 ******************************************************************************** 2025-09-08T16:21:48,056 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T16:21:48,056 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T16:21:48,056 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T16:21:48,056 or your builds will no longer be supported. 2025-09-08T16:21:48,056 ******************************************************************************** 2025-09-08T16:21:48,056 !! 2025-09-08T16:21:48,057 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T16:21:48,700 running egg_info 2025-09-08T16:21:48,774 creating /tmp/pip-pip-egg-info-ovoshgvb/camoco.egg-info 2025-09-08T16:21:48,774 writing /tmp/pip-pip-egg-info-ovoshgvb/camoco.egg-info/PKG-INFO 2025-09-08T16:21:48,778 writing dependency_links to /tmp/pip-pip-egg-info-ovoshgvb/camoco.egg-info/dependency_links.txt 2025-09-08T16:21:48,780 writing requirements to /tmp/pip-pip-egg-info-ovoshgvb/camoco.egg-info/requires.txt 2025-09-08T16:21:48,781 writing top-level names to /tmp/pip-pip-egg-info-ovoshgvb/camoco.egg-info/top_level.txt 2025-09-08T16:21:48,781 writing manifest file '/tmp/pip-pip-egg-info-ovoshgvb/camoco.egg-info/SOURCES.txt' 2025-09-08T16:21:49,158 reading manifest file '/tmp/pip-pip-egg-info-ovoshgvb/camoco.egg-info/SOURCES.txt' 2025-09-08T16:21:49,162 writing manifest file '/tmp/pip-pip-egg-info-ovoshgvb/camoco.egg-info/SOURCES.txt' 2025-09-08T16:21:49,299 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T16:21:49,304 Source in /tmp/pip-wheel-fudpxnsv/camoco_8887e0ae433e40289b2f3db08c5c30ee has version 0.6.2, which satisfies requirement camoco==0.6.2 from https://files.pythonhosted.org/packages/93/58/a1a019531c166ea0c32326ff0cbb6e2c29b8b9550b3b52215facac02e214/camoco-0.6.2.tar.gz 2025-09-08T16:21:49,304 Removed camoco==0.6.2 from https://files.pythonhosted.org/packages/93/58/a1a019531c166ea0c32326ff0cbb6e2c29b8b9550b3b52215facac02e214/camoco-0.6.2.tar.gz from build tracker '/tmp/pip-build-tracker-mma6jqp6' 2025-09-08T16:21:49,315 Created temporary directory: /tmp/pip-unpack-4h0cljzg 2025-09-08T16:21:49,316 Created temporary directory: /tmp/pip-unpack-x3mpjmz7 2025-09-08T16:21:49,316 Building wheels for collected packages: camoco 2025-09-08T16:21:49,317 Created temporary directory: /tmp/pip-wheel-94896b5j 2025-09-08T16:21:49,318 DEPRECATION: Building 'camoco' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'camoco'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T16:21:49,319 Building wheel for camoco (setup.py): started 2025-09-08T16:21:49,320 Destination directory: /tmp/pip-wheel-94896b5j 2025-09-08T16:21:49,320 Running command python setup.py bdist_wheel 2025-09-08T16:21:50,168 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T16:21:50,168 !! 2025-09-08T16:21:50,168 ******************************************************************************** 2025-09-08T16:21:50,168 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T16:21:50,169 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T16:21:50,169 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T16:21:50,169 or your builds will no longer be supported. 2025-09-08T16:21:50,169 ******************************************************************************** 2025-09-08T16:21:50,169 !! 2025-09-08T16:21:50,169 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T16:21:50,720 running bdist_wheel 2025-09-08T16:21:51,312 running build 2025-09-08T16:21:51,313 running build_py 2025-09-08T16:21:51,390 creating build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,391 copying camoco/Ontology.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,392 copying camoco/GOnt.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,392 copying camoco/Chrom.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,393 copying camoco/RefGen.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,394 copying camoco/GWAS.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,394 copying camoco/Tools.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,395 copying camoco/Config.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,395 copying camoco/Genome.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,396 copying camoco/__init__.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,396 copying camoco/Locus.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,397 copying camoco/Exceptions.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,397 copying camoco/COB.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,398 copying camoco/Expr.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,399 copying camoco/Term.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,399 copying camoco/Camoco.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,400 copying camoco/Overlap.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,401 copying camoco/NetComp.py -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,401 creating build/lib.linux-armv7l-cpython-313/camoco/cli 2025-09-08T16:21:51,402 copying camoco/cli/__init__.py -> build/lib.linux-armv7l-cpython-313/camoco/cli 2025-09-08T16:21:51,403 creating build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,403 copying camoco/cli/commands/locality.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,403 copying camoco/cli/commands/list.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,404 copying camoco/cli/commands/plotGWAS.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,404 copying camoco/cli/commands/simulateGWAS.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,405 copying camoco/cli/commands/cistrans.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,405 copying camoco/cli/commands/__init__.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,406 copying camoco/cli/commands/geneneighbors.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,406 copying camoco/cli/commands/snp2gene.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,407 copying camoco/cli/commands/remove.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,407 copying camoco/cli/commands/build.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,408 copying camoco/cli/commands/crossRef.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,408 copying camoco/cli/commands/Analysis.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,409 copying camoco/cli/commands/health.py -> build/lib.linux-armv7l-cpython-313/camoco/cli/commands 2025-09-08T16:21:51,409 running egg_info 2025-09-08T16:21:51,483 writing camoco.egg-info/PKG-INFO 2025-09-08T16:21:51,487 writing dependency_links to camoco.egg-info/dependency_links.txt 2025-09-08T16:21:51,489 writing requirements to camoco.egg-info/requires.txt 2025-09-08T16:21:51,489 writing top-level names to camoco.egg-info/top_level.txt 2025-09-08T16:21:51,567 reading manifest file 'camoco.egg-info/SOURCES.txt' 2025-09-08T16:21:51,573 writing manifest file 'camoco.egg-info/SOURCES.txt' 2025-09-08T16:21:51,576 copying camoco/PCCUP.pyx -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,576 copying camoco/RefGenDist.pyx -> build/lib.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:51,577 copying camoco/cli/camoco -> build/lib.linux-armv7l-cpython-313/camoco/cli 2025-09-08T16:21:51,579 running build_ext 2025-09-08T16:21:52,029 Compiling camoco/PCCUP.pyx because it changed. 2025-09-08T16:21:52,029 [1/1] Cythonizing camoco/PCCUP.pyx 2025-09-08T16:21:55,442 building 'camoco.PCCUP' extension 2025-09-08T16:21:55,443 creating build/temp.linux-armv7l-cpython-313/camoco 2025-09-08T16:21:55,443 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c camoco/PCCUP.c -o build/temp.linux-armv7l-cpython-313/camoco/PCCUP.o 2025-09-08T16:22:16,157 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/camoco/PCCUP.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/camoco/PCCUP.cpython-313-arm-linux-gnueabihf.so 2025-09-08T16:22:16,299 Compiling camoco/RefGenDist.pyx because it changed. 2025-09-08T16:22:16,300 [1/1] Cythonizing camoco/RefGenDist.pyx 2025-09-08T16:22:17,809 building 'camoco.RefGenDist' extension 2025-09-08T16:22:17,809 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c camoco/RefGenDist.c -o build/temp.linux-armv7l-cpython-313/camoco/RefGenDist.o 2025-09-08T16:22:36,258 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/camoco/RefGenDist.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/camoco/RefGenDist.cpython-313-arm-linux-gnueabihf.so 2025-09-08T16:22:36,396 running build_scripts 2025-09-08T16:22:36,397 creating build/scripts-3.13 2025-09-08T16:22:36,397 copying and adjusting camoco/cli/camoco -> build/scripts-3.13 2025-09-08T16:22:36,399 changing mode of build/scripts-3.13/camoco from 644 to 755 2025-09-08T16:22:36,537 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-08T16:22:36,537 !! 2025-09-08T16:22:36,538 ******************************************************************************** 2025-09-08T16:22:36,538 Please avoid running ``setup.py`` directly. 2025-09-08T16:22:36,538 Instead, use pypa/build, pypa/installer or other 2025-09-08T16:22:36,538 standards-based tools. 2025-09-08T16:22:36,538 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T16:22:36,538 or your builds will no longer be supported. 2025-09-08T16:22:36,538 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-08T16:22:36,539 ******************************************************************************** 2025-09-08T16:22:36,539 !! 2025-09-08T16:22:36,539 self.initialize_options() 2025-09-08T16:22:36,617 installing to build/bdist.linux-armv7l/wheel 2025-09-08T16:22:36,617 running install 2025-09-08T16:22:36,643 running install_lib 2025-09-08T16:22:36,716 creating build/bdist.linux-armv7l/wheel 2025-09-08T16:22:36,716 creating build/bdist.linux-armv7l/wheel/camoco 2025-09-08T16:22:36,717 copying build/lib.linux-armv7l-cpython-313/camoco/RefGenDist.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,720 copying build/lib.linux-armv7l-cpython-313/camoco/PCCUP.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,725 copying build/lib.linux-armv7l-cpython-313/camoco/RefGenDist.pyx -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,725 copying build/lib.linux-armv7l-cpython-313/camoco/PCCUP.pyx -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,726 creating build/bdist.linux-armv7l/wheel/camoco/cli 2025-09-08T16:22:36,726 copying build/lib.linux-armv7l-cpython-313/camoco/cli/camoco -> build/bdist.linux-armv7l/wheel/./camoco/cli 2025-09-08T16:22:36,727 creating build/bdist.linux-armv7l/wheel/camoco/cli/commands 2025-09-08T16:22:36,727 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/health.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,727 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/Analysis.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,728 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/crossRef.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,728 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/build.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,728 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/remove.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,729 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/snp2gene.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,729 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/geneneighbors.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,730 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,730 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/cistrans.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,730 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/simulateGWAS.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,731 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/plotGWAS.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,731 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/list.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,731 copying build/lib.linux-armv7l-cpython-313/camoco/cli/commands/locality.py -> build/bdist.linux-armv7l/wheel/./camoco/cli/commands 2025-09-08T16:22:36,732 copying build/lib.linux-armv7l-cpython-313/camoco/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./camoco/cli 2025-09-08T16:22:36,732 copying build/lib.linux-armv7l-cpython-313/camoco/NetComp.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,732 copying build/lib.linux-armv7l-cpython-313/camoco/Overlap.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,733 copying build/lib.linux-armv7l-cpython-313/camoco/Camoco.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,733 copying build/lib.linux-armv7l-cpython-313/camoco/Term.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,734 copying build/lib.linux-armv7l-cpython-313/camoco/Expr.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,734 copying build/lib.linux-armv7l-cpython-313/camoco/COB.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,735 copying build/lib.linux-armv7l-cpython-313/camoco/Exceptions.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,735 copying build/lib.linux-armv7l-cpython-313/camoco/Locus.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,736 copying build/lib.linux-armv7l-cpython-313/camoco/__init__.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,736 copying build/lib.linux-armv7l-cpython-313/camoco/Genome.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,736 copying build/lib.linux-armv7l-cpython-313/camoco/Config.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,737 copying build/lib.linux-armv7l-cpython-313/camoco/Tools.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,737 copying build/lib.linux-armv7l-cpython-313/camoco/GWAS.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,738 copying build/lib.linux-armv7l-cpython-313/camoco/RefGen.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,738 copying build/lib.linux-armv7l-cpython-313/camoco/Chrom.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,738 copying build/lib.linux-armv7l-cpython-313/camoco/GOnt.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,739 copying build/lib.linux-armv7l-cpython-313/camoco/Ontology.py -> build/bdist.linux-armv7l/wheel/./camoco 2025-09-08T16:22:36,739 running install_egg_info 2025-09-08T16:22:36,816 Copying camoco.egg-info to build/bdist.linux-armv7l/wheel/./camoco-0.6.2-py3.13.egg-info 2025-09-08T16:22:36,817 running install_scripts 2025-09-08T16:22:36,818 creating build/bdist.linux-armv7l/wheel/camoco-0.6.2.data/scripts 2025-09-08T16:22:36,818 copying build/scripts-3.13/camoco -> build/bdist.linux-armv7l/wheel/camoco-0.6.2.data/scripts 2025-09-08T16:22:36,819 changing mode of build/bdist.linux-armv7l/wheel/camoco-0.6.2.data/scripts/camoco to 755 2025-09-08T16:22:36,869 creating build/bdist.linux-armv7l/wheel/camoco-0.6.2.dist-info/WHEEL 2025-09-08T16:22:36,870 creating '/tmp/pip-wheel-94896b5j/camoco-0.6.2-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-08T16:22:36,880 adding 'camoco/COB.py' 2025-09-08T16:22:36,882 adding 'camoco/Camoco.py' 2025-09-08T16:22:36,883 adding 'camoco/Chrom.py' 2025-09-08T16:22:36,884 adding 'camoco/Config.py' 2025-09-08T16:22:36,884 adding 'camoco/Exceptions.py' 2025-09-08T16:22:36,888 adding 'camoco/Expr.py' 2025-09-08T16:22:36,890 adding 'camoco/GOnt.py' 2025-09-08T16:22:36,892 adding 'camoco/GWAS.py' 2025-09-08T16:22:36,893 adding 'camoco/Genome.py' 2025-09-08T16:22:36,894 adding 'camoco/Locus.py' 2025-09-08T16:22:36,895 adding 'camoco/NetComp.py' 2025-09-08T16:22:36,897 adding 'camoco/Ontology.py' 2025-09-08T16:22:36,900 adding 'camoco/Overlap.py' 2025-09-08T16:22:37,114 adding 'camoco/PCCUP.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T16:22:37,121 adding 'camoco/PCCUP.pyx' 2025-09-08T16:22:37,126 adding 'camoco/RefGen.py' 2025-09-08T16:22:37,320 adding 'camoco/RefGenDist.cpython-313-arm-linux-gnueabihf.so' 2025-09-08T16:22:37,326 adding 'camoco/RefGenDist.pyx' 2025-09-08T16:22:37,327 adding 'camoco/Term.py' 2025-09-08T16:22:37,328 adding 'camoco/Tools.py' 2025-09-08T16:22:37,329 adding 'camoco/__init__.py' 2025-09-08T16:22:37,330 adding 'camoco/cli/__init__.py' 2025-09-08T16:22:37,333 adding 'camoco/cli/camoco' 2025-09-08T16:22:37,334 adding 'camoco/cli/commands/Analysis.py' 2025-09-08T16:22:37,335 adding 'camoco/cli/commands/__init__.py' 2025-09-08T16:22:37,335 adding 'camoco/cli/commands/build.py' 2025-09-08T16:22:37,336 adding 'camoco/cli/commands/cistrans.py' 2025-09-08T16:22:37,337 adding 'camoco/cli/commands/crossRef.py' 2025-09-08T16:22:37,337 adding 'camoco/cli/commands/geneneighbors.py' 2025-09-08T16:22:37,339 adding 'camoco/cli/commands/health.py' 2025-09-08T16:22:37,340 adding 'camoco/cli/commands/list.py' 2025-09-08T16:22:37,340 adding 'camoco/cli/commands/locality.py' 2025-09-08T16:22:37,341 adding 'camoco/cli/commands/plotGWAS.py' 2025-09-08T16:22:37,342 adding 'camoco/cli/commands/remove.py' 2025-09-08T16:22:37,343 adding 'camoco/cli/commands/simulateGWAS.py' 2025-09-08T16:22:37,344 adding 'camoco/cli/commands/snp2gene.py' 2025-09-08T16:22:37,348 adding 'camoco-0.6.2.data/scripts/camoco' 2025-09-08T16:22:37,349 adding 'camoco-0.6.2.dist-info/METADATA' 2025-09-08T16:22:37,349 adding 'camoco-0.6.2.dist-info/WHEEL' 2025-09-08T16:22:37,350 adding 'camoco-0.6.2.dist-info/top_level.txt' 2025-09-08T16:22:37,351 adding 'camoco-0.6.2.dist-info/RECORD' 2025-09-08T16:22:37,351 removing build/bdist.linux-armv7l/wheel 2025-09-08T16:22:38,009 Building wheel for camoco (setup.py): finished with status 'done' 2025-09-08T16:22:38,019 Created wheel for camoco: filename=camoco-0.6.2-cp313-cp313-linux_armv7l.whl size=904907 sha256=cdf131a1f9881281572e760e70d1fe1509bf4b554da199471c320531df18ccc6 2025-09-08T16:22:38,020 Stored in directory: /tmp/pip-ephem-wheel-cache-z2nk81p_/wheels/29/a8/56/7b69c74853e75be689e2905ecf779c5dd31d8cf69158dff2ae 2025-09-08T16:22:38,028 Successfully built camoco 2025-09-08T16:22:38,031 Removed build tracker: '/tmp/pip-build-tracker-mma6jqp6'