2025-09-08T16:39:28,598 Created temporary directory: /tmp/pip-build-tracker-e5jwwd86 2025-09-08T16:39:28,599 Initialized build tracking at /tmp/pip-build-tracker-e5jwwd86 2025-09-08T16:39:28,599 Created build tracker: /tmp/pip-build-tracker-e5jwwd86 2025-09-08T16:39:28,599 Entered build tracker: /tmp/pip-build-tracker-e5jwwd86 2025-09-08T16:39:28,599 Created temporary directory: /tmp/pip-wheel-ri6_n1nt 2025-09-08T16:39:28,603 Created temporary directory: /tmp/pip-ephem-wheel-cache-bii6crt3 2025-09-08T16:39:28,656 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T16:39:28,658 2 location(s) to search for versions of quantiphyse: 2025-09-08T16:39:28,658 * https://pypi.org/simple/quantiphyse/ 2025-09-08T16:39:28,658 * https://www.piwheels.org/simple/quantiphyse/ 2025-09-08T16:39:28,659 Fetching project page and analyzing links: https://pypi.org/simple/quantiphyse/ 2025-09-08T16:39:28,659 Getting page https://pypi.org/simple/quantiphyse/ 2025-09-08T16:39:28,660 Found index url https://pypi.org/simple/ 2025-09-08T16:39:28,731 Fetched page https://pypi.org/simple/quantiphyse/ as application/vnd.pypi.simple.v1+json 2025-09-08T16:39:28,735 Found link https://files.pythonhosted.org/packages/28/a0/59544760252150f881e99355db9350f780121f8a5bce54d4aadd0750a37c/quantiphyse-0.7.6.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.6 2025-09-08T16:39:28,735 Found link https://files.pythonhosted.org/packages/2d/46/3944f9d2f6520fdee2edf466b75c590a663f1302ecfb35341f81facf39ef/quantiphyse-0.7.6.post15.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.6.post15 2025-09-08T16:39:28,735 Found link https://files.pythonhosted.org/packages/f5/ef/e7ab34f36c6ae6e1778d25950fde139f784793939f3e822232bfa347a57e/quantiphyse-0.7.6.post20.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.6.post20 2025-09-08T16:39:28,735 Skipping link: No binaries permitted for quantiphyse: https://files.pythonhosted.org/packages/07/93/392ed46f2ee981489dd4ce553c57431c29528fc49b80066091d968e60522/quantiphyse-0.7.7-cp27-cp27m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/quantiphyse/) 2025-09-08T16:39:28,736 Skipping link: No binaries permitted for quantiphyse: https://files.pythonhosted.org/packages/8b/a7/56204df5f56d5bf4559b70e61c6ec96fa97a9dd34b54a0f242949cb26e7d/quantiphyse-0.7.7-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/quantiphyse/) 2025-09-08T16:39:28,736 Skipping link: No binaries permitted for quantiphyse: https://files.pythonhosted.org/packages/1b/78/0e942d68af6bdc94a714aa2c5368fb3cf6f5bf7e2c0d9f786efff2a5e01f/quantiphyse-0.7.7-cp34-cp34m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/quantiphyse/) 2025-09-08T16:39:28,736 Found link https://files.pythonhosted.org/packages/a1/a7/53e97afab67628f860f014a6f0a06cb95237d8b99899f980953a85e9263d/quantiphyse-0.7.7.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.7 2025-09-08T16:39:28,736 Found link https://files.pythonhosted.org/packages/5b/a0/5f676942f422dd20c42447ba0a367177631c5a7003ca3fc3d6e97e6decc4/quantiphyse-0.7.7.post5.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.7.post5 2025-09-08T16:39:28,736 Found link https://files.pythonhosted.org/packages/ad/ba/6fd21170a8eb47fca0facbf3b6295ab7137a8676eee24da210342d721654/quantiphyse-0.7.7.post26.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.7.post26 2025-09-08T16:39:28,737 Found link https://files.pythonhosted.org/packages/af/62/cb86ae2a46f74905b08c3be53fee4734be2a8e04e1cbebaaaa452ffbd5c4/quantiphyse-0.7.7.post27.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.7.post27 2025-09-08T16:39:28,737 Found link https://files.pythonhosted.org/packages/0b/7d/be8099398da42f9f118f984873e189f8bf656543872114ae6257043471fe/quantiphyse-0.7.8.post2.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.8.post2 2025-09-08T16:39:28,737 Found link https://files.pythonhosted.org/packages/f7/68/1cf4eb4c4ec88358cbde26ff20d3f8b1dfa14ad86a51929bcd7987a976bb/quantiphyse-0.7.9.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.9 2025-09-08T16:39:28,737 Found link https://files.pythonhosted.org/packages/94/a0/563be0348626c5d5282c2659ec474be661fca8f8ee56eed8cac72dd3f2d0/quantiphyse-0.7.9.post3.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.9.post3 2025-09-08T16:39:28,737 Found link https://files.pythonhosted.org/packages/d1/aa/3b8b9b29068f813788432aa94b1dd429ddcfb408801b547abdd1313ebbba/quantiphyse-0.7.10.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.10 2025-09-08T16:39:28,738 Found link https://files.pythonhosted.org/packages/b7/5a/76cfda35951d452b757eff0997ed2efdc478d6e1ea3960c80e2ff7d42005/quantiphyse-0.7.10.post12.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.7.10.post12 2025-09-08T16:39:28,738 Found link https://files.pythonhosted.org/packages/22/28/8bb80097b50ac15adc1bac2e9a6890a6df60f9e293750bb9bcedb0340b92/quantiphyse-0.9.3.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.3 2025-09-08T16:39:28,738 Found link https://files.pythonhosted.org/packages/39/03/29bb7e794ed47bd7b79c3f0034b176b13d931c7d1afbc468a5e46aefb4bf/quantiphyse-0.9.3.post2.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.3.post2 2025-09-08T16:39:28,738 Found link https://files.pythonhosted.org/packages/a6/da/433f4b82cee290f2e64067113f0429a4bc4ad0aa26db46ea2e64751ca4b5/quantiphyse-0.9.3.post24.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.3.post24 2025-09-08T16:39:28,738 Found link https://files.pythonhosted.org/packages/7b/8e/83b5bdbf71a0e8f6e9113fca4761cda90fe62f02bcdeb3ca35d5d1d3a43f/quantiphyse-0.9.3.post39.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.3.post39 2025-09-08T16:39:28,739 Found link https://files.pythonhosted.org/packages/c3/f6/f91f80f98787794905c430f348d610ee9a46e4b6719f7ab1b6e0d6b63945/quantiphyse-0.9.4.post5.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.4.post5 2025-09-08T16:39:28,739 Found link https://files.pythonhosted.org/packages/13/48/7214c4fc0ddf5fee23450e0ad08fc07b2b6ea49d03f033425108aa315785/quantiphyse-0.9.5.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.5 2025-09-08T16:39:28,739 Found link https://files.pythonhosted.org/packages/55/df/73ed4fcb7e7cb7951dd492972e7e25640e529de5cd805128d36c6c8ce28d/quantiphyse-0.9.5.post13.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.5.post13 2025-09-08T16:39:28,739 Found link https://files.pythonhosted.org/packages/91/7c/69634dc0dfc4a31ed040389b6a853dc21a294928b7390bb52fe47273e699/quantiphyse-0.9.5.post24.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.5.post24 2025-09-08T16:39:28,740 Found link https://files.pythonhosted.org/packages/30/56/668efd11021062481058399a2f6e70969faf529ae7b70c4ee1783e41cf4c/quantiphyse-0.9.6.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.6 2025-09-08T16:39:28,740 Found link https://files.pythonhosted.org/packages/01/76/feed4791b8e62fcd52cd1e1326983dbe874d4c91bc5aa54482f180ad9f56/quantiphyse-0.9.7.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.7 2025-09-08T16:39:28,740 Found link https://files.pythonhosted.org/packages/70/48/bc040f91d784710832218ec89bfd10cb017296d1218ddb62250daa5b4a4a/quantiphyse-0.9.7.post6.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.7.post6 2025-09-08T16:39:28,741 Found link https://files.pythonhosted.org/packages/3b/e3/f72a1a4919752bf6d19d35c2c5792b8eaffc39a9e464706077db53a6985c/quantiphyse-0.9.8.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.8 2025-09-08T16:39:28,741 Found link https://files.pythonhosted.org/packages/1d/ac/6c3f92916a0c29e93e59add218f05fb912986a07a43855ddb55601c248c6/quantiphyse-0.9.8.post1.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.8.post1 2025-09-08T16:39:28,741 Found link https://files.pythonhosted.org/packages/8c/0d/04bc86b827c22620c072bc826eb6b6d5206421e25a134361c9d3ed175433/quantiphyse-0.9.9.post1.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.9.post1 2025-09-08T16:39:28,741 Found link https://files.pythonhosted.org/packages/3b/d2/48b39e26395341bcf70a1263b52bcb1976c63f3705f9aa9894c507051f07/quantiphyse-0.9.9.post2.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.9.post2 2025-09-08T16:39:28,741 Found link https://files.pythonhosted.org/packages/9f/59/a499dfb8afaccb91c1b6fd4eb84ef6c85f472a04498f0962becfa9362177/quantiphyse-0.9.9.post6.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.9.post6 2025-09-08T16:39:28,742 Found link https://files.pythonhosted.org/packages/d8/2c/98631248f6d7048b7e0775e9d9cee34cd6b072c9c07bec300015f6dd5497/quantiphyse-0.9.10.tar.gz (from https://pypi.org/simple/quantiphyse/), version: 0.9.10 2025-09-08T16:39:28,742 Fetching project page and analyzing links: https://www.piwheels.org/simple/quantiphyse/ 2025-09-08T16:39:28,742 Getting page https://www.piwheels.org/simple/quantiphyse/ 2025-09-08T16:39:28,743 Found index url https://www.piwheels.org/simple/ 2025-09-08T16:39:28,841 Fetched page https://www.piwheels.org/simple/quantiphyse/ as text/html 2025-09-08T16:39:28,845 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.10-py3-none-any.whl#sha256=c25f312c26731dcaf462263914f8360fa05085ec5bc19ff69dd969065817b717 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,845 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.9.post6-py3-none-any.whl#sha256=747b5dfb5f3aacfa2f64e287e8b71928beea6434a821c3b809b1d70124715ec1 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,845 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.9.post2-py3-none-any.whl#sha256=b1f6a19ef05aac0b78b5a4cbb1ddd8e34e87366ea144686bd42ea9fa34e736c1 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,846 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.9.post1-py3-none-any.whl#sha256=0801bc2aa6b7b8fedfd2f275b5a29201df0b3f9c0c07d8a03efd0f7b685305b1 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,846 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.8.post1-py3-none-any.whl#sha256=e8646db4c2c821e1acf17901a57a9220f1f3866ac25b7ca09e73976615cb0678 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,846 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.8-py3-none-any.whl#sha256=fcd6ed32308a8dad74681ecb761a7ce987ef15a6165eaa532aa32a902520c63a (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,846 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.7.post6-py3-none-any.whl#sha256=da2c753a1ee8713f2e65c8e3eedc238fef9afed025beb84ae27fca4d60f6b764 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,846 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.7-py3-none-any.whl#sha256=7213d3158ef70b2af4965810947f4e4c1cbdd5ab78216aeeb79dc8f04cc7e76d (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,846 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.6-py3-none-any.whl#sha256=a89bf84d77112287b4a8ff424241418a0d0d3f1a02f945586b75301838980917 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,846 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.5.post24-py3-none-any.whl#sha256=5d30f5b96ca8642eb07b57532202a075cd5608b24a41b820f649ce3e202b171e (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,846 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.5.post13-py3-none-any.whl#sha256=30d5e8aa823139faa1ba186088f5f896b56b066fa867a2fddfd20a18d0c2d235 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,847 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.5-py3-none-any.whl#sha256=85b2fa8fafc8460f14ba21a5b3933fcbc158ebcd83a22d54751769bfe5a31dcf (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,847 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.4.post5-py3-none-any.whl#sha256=e7639b2c4f62733eebe8fb8fae760cf0bfb3cec379331afd4d7886d4f2da78ab (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,847 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.3.post39-py3-none-any.whl#sha256=5d8a3433660cfa9c02ea0e146e393f3fdcce6d2c086edf8212d9392951145fa5 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,847 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.3.post24-py3-none-any.whl#sha256=977f950b027ba67b7f0041e70c7095a3025369dfc94ffd659be910d344498f5c (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,847 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.3.post2-py3-none-any.whl#sha256=b91dcc4ee647903ac9ede0bb0a0f0923e0e25646facf65cf02d2a5bfceab6d02 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,847 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.9.3-py3-none-any.whl#sha256=9bd7f1cd9430ccb667fdb244300a4415ef686349cf6e153ff6b2d220bbeb439e (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,847 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.7.10.post12-py3-none-any.whl#sha256=68de9091c195b93c6328f596c32a4a5f991c19ba6c9f231b529f8e674b246450 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,847 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.7.10-py3-none-any.whl#sha256=41bf71eccd32041ef54b33f964b0dd18057f4ad5d90c6b79d3d8ce4ad4c26707 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,848 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.7.9.post3-py3-none-any.whl#sha256=008a5578a7ba32ea577ac47634c02b0b2d81374b7a388496055df0fd7ebbcfbf (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,848 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.7.9-py3-none-any.whl#sha256=c1ee32e88e344f371f33a781140e21390ca44c1d8e0d563f80da31e2f9a258c4 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,848 Skipping link: No binaries permitted for quantiphyse: https://archive1.piwheels.org/simple/quantiphyse/quantiphyse-0.7.8.post2-py3-none-any.whl#sha256=333de3ed7d78603d1a75fc2cdc555ae9c999581bcac22a0221d8cc9f8da74a60 (from https://www.piwheels.org/simple/quantiphyse/) 2025-09-08T16:39:28,848 Skipping link: not a file: https://www.piwheels.org/simple/quantiphyse/ 2025-09-08T16:39:28,848 Skipping link: not a file: https://pypi.org/simple/quantiphyse/ 2025-09-08T16:39:28,879 Given no hashes to check 1 links for project 'quantiphyse': discarding no candidates 2025-09-08T16:39:28,880 Collecting quantiphyse==0.7.7.post27 2025-09-08T16:39:28,881 Created temporary directory: /tmp/pip-unpack-kfn8m72v 2025-09-08T16:39:30,094 Downloading quantiphyse-0.7.7.post27.tar.gz (1.5 MB) 2025-09-08T16:39:30,571 Added quantiphyse==0.7.7.post27 from https://files.pythonhosted.org/packages/af/62/cb86ae2a46f74905b08c3be53fee4734be2a8e04e1cbebaaaa452ffbd5c4/quantiphyse-0.7.7.post27.tar.gz to build tracker '/tmp/pip-build-tracker-e5jwwd86' 2025-09-08T16:39:30,572 Running setup.py (path:/tmp/pip-wheel-ri6_n1nt/quantiphyse_20795f89c6e54e50aeea4b21f2051969/setup.py) egg_info for package quantiphyse 2025-09-08T16:39:30,572 Created temporary directory: /tmp/pip-pip-egg-info-62ts9pns 2025-09-08T16:39:30,572 Preparing metadata (setup.py): started 2025-09-08T16:39:30,573 Running command python setup.py egg_info 2025-09-08T16:39:31,490 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T16:39:31,490 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T16:39:31,498 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T16:39:31,498 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T16:39:36,246 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:127:29: Use boundscheck(False) for faster access 2025-09-08T16:39:36,246 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:128:29: Use boundscheck(False) for faster access 2025-09-08T16:39:36,247 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:129:29: Use boundscheck(False) for faster access 2025-09-08T16:39:36,250 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:149:35: Use boundscheck(False) for faster access 2025-09-08T16:39:36,251 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:150:48: Use boundscheck(False) for faster access 2025-09-08T16:39:36,252 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:160:55: Use boundscheck(False) for faster access 2025-09-08T16:39:36,253 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:161:58: Use boundscheck(False) for faster access 2025-09-08T16:39:36,253 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:164:74: Use boundscheck(False) for faster access 2025-09-08T16:39:36,254 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:173:39: Use boundscheck(False) for faster access 2025-09-08T16:39:36,255 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:174:48: Use boundscheck(False) for faster access 2025-09-08T16:39:36,255 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:175:40: Use boundscheck(False) for faster access 2025-09-08T16:39:36,257 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:192:31: Use boundscheck(False) for faster access 2025-09-08T16:39:36,258 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:195:43: Use boundscheck(False) for faster access 2025-09-08T16:39:36,258 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:198:44: Use boundscheck(False) for faster access 2025-09-08T16:39:36,259 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:200:39: Use boundscheck(False) for faster access 2025-09-08T16:39:36,259 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:201:32: Use boundscheck(False) for faster access 2025-09-08T16:39:36,260 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:202:32: Use boundscheck(False) for faster access 2025-09-08T16:39:36,260 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:203:32: Use boundscheck(False) for faster access 2025-09-08T16:39:36,261 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:205:55: Use boundscheck(False) for faster access 2025-09-08T16:39:36,261 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:205:36: Use boundscheck(False) for faster access 2025-09-08T16:39:36,262 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:210:53: Use boundscheck(False) for faster access 2025-09-08T16:39:36,262 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:210:28: Use boundscheck(False) for faster access 2025-09-08T16:39:36,263 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:218:35: Use boundscheck(False) for faster access 2025-09-08T16:39:36,264 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:221:47: Use boundscheck(False) for faster access 2025-09-08T16:39:36,265 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:224:48: Use boundscheck(False) for faster access 2025-09-08T16:39:36,265 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:228:56: Use boundscheck(False) for faster access 2025-09-08T16:39:36,266 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:229:55: Use boundscheck(False) for faster access 2025-09-08T16:39:36,266 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:233:45: Use boundscheck(False) for faster access 2025-09-08T16:39:36,267 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:234:46: Use boundscheck(False) for faster access 2025-09-08T16:39:36,279 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:295:27: Use boundscheck(False) for faster access 2025-09-08T16:39:36,279 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:298:41: Use boundscheck(False) for faster access 2025-09-08T16:39:36,280 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:303:36: Use boundscheck(False) for faster access 2025-09-08T16:39:36,281 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:305:38: Use boundscheck(False) for faster access 2025-09-08T16:39:36,281 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:308:30: Use boundscheck(False) for faster access 2025-09-08T16:39:36,281 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:309:30: Use boundscheck(False) for faster access 2025-09-08T16:39:36,282 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:310:30: Use boundscheck(False) for faster access 2025-09-08T16:39:36,283 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:317:43: Use boundscheck(False) for faster access 2025-09-08T16:39:36,283 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:317:65: Use boundscheck(False) for faster access 2025-09-08T16:39:36,283 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:318:43: Use boundscheck(False) for faster access 2025-09-08T16:39:36,284 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:318:65: Use boundscheck(False) for faster access 2025-09-08T16:39:36,284 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:319:43: Use boundscheck(False) for faster access 2025-09-08T16:39:36,284 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:319:65: Use boundscheck(False) for faster access 2025-09-08T16:39:36,285 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:326:44: Use boundscheck(False) for faster access 2025-09-08T16:39:36,286 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:327:58: Use boundscheck(False) for faster access 2025-09-08T16:39:36,287 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:328:54: Use boundscheck(False) for faster access 2025-09-08T16:39:36,287 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:330:46: Use boundscheck(False) for faster access 2025-09-08T16:39:36,287 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:331:46: Use boundscheck(False) for faster access 2025-09-08T16:39:36,288 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:332:46: Use boundscheck(False) for faster access 2025-09-08T16:39:36,289 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:336:56: Use boundscheck(False) for faster access 2025-09-08T16:39:36,290 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:337:56: Use boundscheck(False) for faster access 2025-09-08T16:39:36,290 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:338:65: Use boundscheck(False) for faster access 2025-09-08T16:39:36,291 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:344:57: Use boundscheck(False) for faster access 2025-09-08T16:39:36,292 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:345:57: Use boundscheck(False) for faster access 2025-09-08T16:39:36,292 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:346:57: Use boundscheck(False) for faster access 2025-09-08T16:39:36,292 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx:344:46: Use boundscheck(False) for faster access 2025-09-08T16:39:39,446 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:27:65: Index should be typed for more efficient access 2025-09-08T16:39:39,446 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:27:69: Index should be typed for more efficient access 2025-09-08T16:39:39,446 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:27:73: Index should be typed for more efficient access 2025-09-08T16:39:39,447 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:27:31: Index should be typed for more efficient access 2025-09-08T16:39:39,447 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:27:35: Index should be typed for more efficient access 2025-09-08T16:39:39,447 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:27:39: Index should be typed for more efficient access 2025-09-08T16:39:39,450 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:48:28: Index should be typed for more efficient access 2025-09-08T16:39:39,450 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:48:32: Index should be typed for more efficient access 2025-09-08T16:39:39,450 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:48:36: Index should be typed for more efficient access 2025-09-08T16:39:39,453 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:62:28: Index should be typed for more efficient access 2025-09-08T16:39:39,454 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:62:32: Index should be typed for more efficient access 2025-09-08T16:39:39,454 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:62:36: Index should be typed for more efficient access 2025-09-08T16:39:39,455 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:68:54: Index should be typed for more efficient access 2025-09-08T16:39:39,455 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:68:58: Index should be typed for more efficient access 2025-09-08T16:39:39,455 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:68:62: Index should be typed for more efficient access 2025-09-08T16:39:39,455 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:68:66: Index should be typed for more efficient access 2025-09-08T16:39:39,455 performance hint: quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx:68:39: Index should be typed for more efficient access 2025-09-08T16:39:42,406 Compiling quantiphyse/packages/core/t1/t1_model.pyx because it changed. 2025-09-08T16:39:42,406 Compiling quantiphyse/packages/core/supervoxels/perfusionslic/additional/bspline_smoothing.pyx because it changed. 2025-09-08T16:39:42,406 Compiling quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx because it changed. 2025-09-08T16:39:42,406 Compiling quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx because it changed. 2025-09-08T16:39:42,406 Compiling quantiphyse/packages/core/supervoxels/perfusionslic/additional/processing.pyx because it changed. 2025-09-08T16:39:42,406 [1/5] Cythonizing quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx 2025-09-08T16:39:42,407 [2/5] Cythonizing quantiphyse/packages/core/supervoxels/perfusionslic/additional/bspline_smoothing.pyx 2025-09-08T16:39:42,407 [3/5] Cythonizing quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx 2025-09-08T16:39:42,407 [4/5] Cythonizing quantiphyse/packages/core/supervoxels/perfusionslic/additional/processing.pyx 2025-09-08T16:39:42,407 [5/5] Cythonizing quantiphyse/packages/core/t1/t1_model.pyx 2025-09-08T16:39:42,537 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T16:39:42,538 !! 2025-09-08T16:39:42,538 ******************************************************************************** 2025-09-08T16:39:42,538 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T16:39:42,538 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T16:39:42,538 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T16:39:42,538 or your builds will no longer be supported. 2025-09-08T16:39:42,538 ******************************************************************************** 2025-09-08T16:39:42,538 !! 2025-09-08T16:39:42,539 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T16:39:42,888 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T16:39:42,888 !! 2025-09-08T16:39:42,888 ******************************************************************************** 2025-09-08T16:39:42,888 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T16:39:42,888 License :: Free for non-commercial use 2025-09-08T16:39:42,889 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T16:39:42,889 ******************************************************************************** 2025-09-08T16:39:42,889 !! 2025-09-08T16:39:42,889 self._finalize_license_expression() 2025-09-08T16:39:42,963 running egg_info 2025-09-08T16:39:43,038 creating /tmp/pip-pip-egg-info-62ts9pns/quantiphyse.egg-info 2025-09-08T16:39:43,038 writing /tmp/pip-pip-egg-info-62ts9pns/quantiphyse.egg-info/PKG-INFO 2025-09-08T16:39:43,039 writing dependency_links to /tmp/pip-pip-egg-info-62ts9pns/quantiphyse.egg-info/dependency_links.txt 2025-09-08T16:39:43,040 writing entry points to /tmp/pip-pip-egg-info-62ts9pns/quantiphyse.egg-info/entry_points.txt 2025-09-08T16:39:43,040 writing requirements to /tmp/pip-pip-egg-info-62ts9pns/quantiphyse.egg-info/requires.txt 2025-09-08T16:39:43,041 writing top-level names to /tmp/pip-pip-egg-info-62ts9pns/quantiphyse.egg-info/top_level.txt 2025-09-08T16:39:43,041 writing manifest file '/tmp/pip-pip-egg-info-62ts9pns/quantiphyse.egg-info/SOURCES.txt' 2025-09-08T16:39:43,282 reading manifest file '/tmp/pip-pip-egg-info-62ts9pns/quantiphyse.egg-info/SOURCES.txt' 2025-09-08T16:39:43,283 reading manifest template 'MANIFEST.in' 2025-09-08T16:39:43,346 warning: no files found matching '*.cc' under directory 'quantiphyse' 2025-09-08T16:39:43,387 adding license file 'LICENSE' 2025-09-08T16:39:43,396 writing manifest file '/tmp/pip-pip-egg-info-62ts9pns/quantiphyse.egg-info/SOURCES.txt' 2025-09-08T16:39:44,358 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T16:39:44,363 Source in /tmp/pip-wheel-ri6_n1nt/quantiphyse_20795f89c6e54e50aeea4b21f2051969 has version 0.7.7.post27, which satisfies requirement quantiphyse==0.7.7.post27 from https://files.pythonhosted.org/packages/af/62/cb86ae2a46f74905b08c3be53fee4734be2a8e04e1cbebaaaa452ffbd5c4/quantiphyse-0.7.7.post27.tar.gz 2025-09-08T16:39:44,364 Removed quantiphyse==0.7.7.post27 from https://files.pythonhosted.org/packages/af/62/cb86ae2a46f74905b08c3be53fee4734be2a8e04e1cbebaaaa452ffbd5c4/quantiphyse-0.7.7.post27.tar.gz from build tracker '/tmp/pip-build-tracker-e5jwwd86' 2025-09-08T16:39:44,370 Created temporary directory: /tmp/pip-unpack-654o336m 2025-09-08T16:39:44,370 Created temporary directory: /tmp/pip-unpack-80atx4n8 2025-09-08T16:39:44,370 Building wheels for collected packages: quantiphyse 2025-09-08T16:39:44,371 Created temporary directory: /tmp/pip-wheel-lkpmte17 2025-09-08T16:39:44,372 DEPRECATION: Building 'quantiphyse' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'quantiphyse'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T16:39:44,373 Building wheel for quantiphyse (setup.py): started 2025-09-08T16:39:44,373 Destination directory: /tmp/pip-wheel-lkpmte17 2025-09-08T16:39:44,374 Running command python setup.py bdist_wheel 2025-09-08T16:39:45,291 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T16:39:45,291 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T16:39:45,299 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T16:39:45,299 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T16:39:46,058 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T16:39:46,058 !! 2025-09-08T16:39:46,058 ******************************************************************************** 2025-09-08T16:39:46,058 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T16:39:46,059 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T16:39:46,059 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T16:39:46,059 or your builds will no longer be supported. 2025-09-08T16:39:46,059 ******************************************************************************** 2025-09-08T16:39:46,059 !! 2025-09-08T16:39:46,059 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T16:39:46,396 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T16:39:46,396 !! 2025-09-08T16:39:46,396 ******************************************************************************** 2025-09-08T16:39:46,396 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T16:39:46,396 License :: Free for non-commercial use 2025-09-08T16:39:46,396 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T16:39:46,397 ******************************************************************************** 2025-09-08T16:39:46,397 !! 2025-09-08T16:39:46,397 self._finalize_license_expression() 2025-09-08T16:39:46,397 running bdist_wheel 2025-09-08T16:39:46,766 running build 2025-09-08T16:39:46,766 running build_py 2025-09-08T16:39:46,843 creating build/lib.linux-armv7l-cpython-313/quantiphyse 2025-09-08T16:39:46,844 copying quantiphyse/_version.py -> build/lib.linux-armv7l-cpython-313/quantiphyse 2025-09-08T16:39:46,844 copying quantiphyse/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse 2025-09-08T16:39:46,845 copying quantiphyse/qpmain.py -> build/lib.linux-armv7l-cpython-313/quantiphyse 2025-09-08T16:39:46,846 creating build/lib.linux-armv7l-cpython-313/quantiphyse/data 2025-09-08T16:39:46,846 copying quantiphyse/data/extras.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/data 2025-09-08T16:39:46,846 copying quantiphyse/data/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/data 2025-09-08T16:39:46,847 copying quantiphyse/data/dicoms.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/data 2025-09-08T16:39:46,848 copying quantiphyse/data/qpdata.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/data 2025-09-08T16:39:46,848 copying quantiphyse/data/volume_management.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/data 2025-09-08T16:39:46,849 copying quantiphyse/data/functions.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/data 2025-09-08T16:39:46,850 copying quantiphyse/data/nifti.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/data 2025-09-08T16:39:46,850 copying quantiphyse/data/load_save.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/data 2025-09-08T16:39:46,851 creating build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:46,851 copying quantiphyse/icons/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:46,852 creating build/lib.linux-armv7l-cpython-313/quantiphyse/processes 2025-09-08T16:39:46,852 copying quantiphyse/processes/normalisation.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/processes 2025-09-08T16:39:46,853 copying quantiphyse/processes/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/processes 2025-09-08T16:39:46,854 copying quantiphyse/processes/process.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/processes 2025-09-08T16:39:46,854 copying quantiphyse/processes/io.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/processes 2025-09-08T16:39:46,855 copying quantiphyse/processes/feat_pca.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/processes 2025-09-08T16:39:46,855 copying quantiphyse/processes/misc.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/processes 2025-09-08T16:39:46,856 creating build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,856 copying quantiphyse/gui/MainWindow.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,857 copying quantiphyse/gui/data_views.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,858 copying quantiphyse/gui/pickers.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,858 copying quantiphyse/gui/Register.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,859 copying quantiphyse/gui/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,859 copying quantiphyse/gui/OrthoDataView.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,860 copying quantiphyse/gui/HistogramWidget.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,860 copying quantiphyse/gui/options.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,861 copying quantiphyse/gui/widgets.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,862 copying quantiphyse/gui/plot.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,862 copying quantiphyse/gui/dialogs.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,863 copying quantiphyse/gui/ViewOptions.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,863 copying quantiphyse/gui/ImageView.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/gui 2025-09-08T16:39:46,864 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages 2025-09-08T16:39:46,864 copying quantiphyse/packages/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages 2025-09-08T16:39:46,865 creating build/lib.linux-armv7l-cpython-313/quantiphyse/test 2025-09-08T16:39:46,865 copying quantiphyse/test/slice_plane_test.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/test 2025-09-08T16:39:46,866 copying quantiphyse/test/run.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/test 2025-09-08T16:39:46,866 copying quantiphyse/test/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/test 2025-09-08T16:39:46,867 copying quantiphyse/test/io_test.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/test 2025-09-08T16:39:46,867 copying quantiphyse/test/ivm_test.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/test 2025-09-08T16:39:46,868 copying quantiphyse/test/process_test.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/test 2025-09-08T16:39:46,868 copying quantiphyse/test/widget_test.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/test 2025-09-08T16:39:46,869 copying quantiphyse/test/qpd_test.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/test 2025-09-08T16:39:46,870 creating build/lib.linux-armv7l-cpython-313/quantiphyse/resources 2025-09-08T16:39:46,870 copying quantiphyse/resources/resource_py3.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/resources 2025-09-08T16:39:46,870 copying quantiphyse/resources/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/resources 2025-09-08T16:39:46,871 copying quantiphyse/resources/resource_py2.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/resources 2025-09-08T16:39:46,872 creating build/lib.linux-armv7l-cpython-313/quantiphyse/utils 2025-09-08T16:39:46,872 copying quantiphyse/utils/batch.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/utils 2025-09-08T16:39:46,873 copying quantiphyse/utils/local.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/utils 2025-09-08T16:39:46,873 copying quantiphyse/utils/exceptions.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/utils 2025-09-08T16:39:46,874 copying quantiphyse/utils/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/utils 2025-09-08T16:39:46,874 copying quantiphyse/utils/cmdline.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/utils 2025-09-08T16:39:46,875 copying quantiphyse/utils/logger.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/utils 2025-09-08T16:39:46,875 copying quantiphyse/utils/plugins.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/utils 2025-09-08T16:39:46,876 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core 2025-09-08T16:39:46,876 copying quantiphyse/packages/core/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core 2025-09-08T16:39:46,877 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/plugins 2025-09-08T16:39:46,877 copying quantiphyse/packages/plugins/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/plugins 2025-09-08T16:39:46,878 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/overview 2025-09-08T16:39:46,878 copying quantiphyse/packages/core/overview/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/overview 2025-09-08T16:39:46,879 copying quantiphyse/packages/core/overview/widget.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/overview 2025-09-08T16:39:46,879 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1 2025-09-08T16:39:46,880 copying quantiphyse/packages/core/t1/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1 2025-09-08T16:39:46,880 copying quantiphyse/packages/core/t1/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1 2025-09-08T16:39:46,881 copying quantiphyse/packages/core/t1/process.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1 2025-09-08T16:39:46,881 copying quantiphyse/packages/core/t1/widgets.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1 2025-09-08T16:39:46,882 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/data 2025-09-08T16:39:46,882 copying quantiphyse/packages/core/data/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/data 2025-09-08T16:39:46,883 copying quantiphyse/packages/core/data/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/data 2025-09-08T16:39:46,883 copying quantiphyse/packages/core/data/widgets.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/data 2025-09-08T16:39:46,884 copying quantiphyse/packages/core/data/processes.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/data 2025-09-08T16:39:46,885 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/smoothing 2025-09-08T16:39:46,885 copying quantiphyse/packages/core/smoothing/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/smoothing 2025-09-08T16:39:46,885 copying quantiphyse/packages/core/smoothing/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/smoothing 2025-09-08T16:39:46,886 copying quantiphyse/packages/core/smoothing/process.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/smoothing 2025-09-08T16:39:46,886 copying quantiphyse/packages/core/smoothing/widget.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/smoothing 2025-09-08T16:39:46,887 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/radialprofile 2025-09-08T16:39:46,888 copying quantiphyse/packages/core/radialprofile/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/radialprofile 2025-09-08T16:39:46,888 copying quantiphyse/packages/core/radialprofile/process_tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/radialprofile 2025-09-08T16:39:46,889 copying quantiphyse/packages/core/radialprofile/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/radialprofile 2025-09-08T16:39:46,889 copying quantiphyse/packages/core/radialprofile/process.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/radialprofile 2025-09-08T16:39:46,890 copying quantiphyse/packages/core/radialprofile/widget.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/radialprofile 2025-09-08T16:39:46,890 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/simulation 2025-09-08T16:39:46,891 copying quantiphyse/packages/core/simulation/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/simulation 2025-09-08T16:39:46,891 copying quantiphyse/packages/core/simulation/widgets.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/simulation 2025-09-08T16:39:46,892 copying quantiphyse/packages/core/simulation/processes.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/simulation 2025-09-08T16:39:46,892 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/batch_builder 2025-09-08T16:39:46,893 copying quantiphyse/packages/core/batch_builder/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/batch_builder 2025-09-08T16:39:46,893 copying quantiphyse/packages/core/batch_builder/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/batch_builder 2025-09-08T16:39:46,894 copying quantiphyse/packages/core/batch_builder/widget.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/batch_builder 2025-09-08T16:39:46,894 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/pca 2025-09-08T16:39:46,895 copying quantiphyse/packages/core/pca/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/pca 2025-09-08T16:39:46,895 copying quantiphyse/packages/core/pca/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/pca 2025-09-08T16:39:46,896 copying quantiphyse/packages/core/pca/process.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/pca 2025-09-08T16:39:46,896 copying quantiphyse/packages/core/pca/widget.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/pca 2025-09-08T16:39:46,897 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels 2025-09-08T16:39:46,897 copying quantiphyse/packages/core/supervoxels/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels 2025-09-08T16:39:46,898 copying quantiphyse/packages/core/supervoxels/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels 2025-09-08T16:39:46,898 copying quantiphyse/packages/core/supervoxels/process.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels 2025-09-08T16:39:46,899 copying quantiphyse/packages/core/supervoxels/widgets.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels 2025-09-08T16:39:46,900 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/experimental 2025-09-08T16:39:46,900 copying quantiphyse/packages/core/experimental/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/experimental 2025-09-08T16:39:46,901 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/histogram 2025-09-08T16:39:46,901 copying quantiphyse/packages/core/histogram/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/histogram 2025-09-08T16:39:46,901 copying quantiphyse/packages/core/histogram/process_tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/histogram 2025-09-08T16:39:46,902 copying quantiphyse/packages/core/histogram/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/histogram 2025-09-08T16:39:46,902 copying quantiphyse/packages/core/histogram/process.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/histogram 2025-09-08T16:39:46,903 copying quantiphyse/packages/core/histogram/widget.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/histogram 2025-09-08T16:39:46,904 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/registration 2025-09-08T16:39:46,904 copying quantiphyse/packages/core/registration/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/registration 2025-09-08T16:39:46,904 copying quantiphyse/packages/core/registration/process.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/registration 2025-09-08T16:39:46,905 copying quantiphyse/packages/core/registration/widget.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/registration 2025-09-08T16:39:46,905 copying quantiphyse/packages/core/registration/reg_method.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/registration 2025-09-08T16:39:46,906 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/clustering 2025-09-08T16:39:46,907 copying quantiphyse/packages/core/clustering/kmeans.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/clustering 2025-09-08T16:39:46,907 copying quantiphyse/packages/core/clustering/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/clustering 2025-09-08T16:39:46,908 copying quantiphyse/packages/core/clustering/process_tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/clustering 2025-09-08T16:39:46,908 copying quantiphyse/packages/core/clustering/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/clustering 2025-09-08T16:39:46,909 copying quantiphyse/packages/core/clustering/widgets.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/clustering 2025-09-08T16:39:46,909 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/roi_builder 2025-09-08T16:39:46,910 copying quantiphyse/packages/core/roi_builder/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/roi_builder 2025-09-08T16:39:46,910 copying quantiphyse/packages/core/roi_builder/widget.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/roi_builder 2025-09-08T16:39:46,911 copying quantiphyse/packages/core/roi_builder/tools.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/roi_builder 2025-09-08T16:39:46,912 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/analysis 2025-09-08T16:39:46,912 copying quantiphyse/packages/core/analysis/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/analysis 2025-09-08T16:39:46,913 copying quantiphyse/packages/core/analysis/process_tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/analysis 2025-09-08T16:39:46,913 copying quantiphyse/packages/core/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/analysis 2025-09-08T16:39:46,914 copying quantiphyse/packages/core/analysis/widgets.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/analysis 2025-09-08T16:39:46,914 copying quantiphyse/packages/core/analysis/processes.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/analysis 2025-09-08T16:39:46,915 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/compare 2025-09-08T16:39:46,915 copying quantiphyse/packages/core/compare/tests.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/compare 2025-09-08T16:39:46,916 copying quantiphyse/packages/core/compare/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/compare 2025-09-08T16:39:46,916 copying quantiphyse/packages/core/compare/widget.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/compare 2025-09-08T16:39:46,917 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic 2025-09-08T16:39:46,917 copying quantiphyse/packages/core/supervoxels/perfusionslic/slic_superpixels_feat.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic 2025-09-08T16:39:46,918 copying quantiphyse/packages/core/supervoxels/perfusionslic/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic 2025-09-08T16:39:46,918 copying quantiphyse/packages/core/supervoxels/perfusionslic/perfusionslice_class.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic 2025-09-08T16:39:46,919 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic/additional 2025-09-08T16:39:46,919 copying quantiphyse/packages/core/supervoxels/perfusionslic/additional/__init__.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic/additional 2025-09-08T16:39:46,920 copying quantiphyse/packages/core/supervoxels/perfusionslic/additional/io.py -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic/additional 2025-09-08T16:39:46,920 running egg_info 2025-09-08T16:39:46,994 writing quantiphyse.egg-info/PKG-INFO 2025-09-08T16:39:46,996 writing dependency_links to quantiphyse.egg-info/dependency_links.txt 2025-09-08T16:39:46,996 writing entry points to quantiphyse.egg-info/entry_points.txt 2025-09-08T16:39:46,997 writing requirements to quantiphyse.egg-info/requires.txt 2025-09-08T16:39:46,997 writing top-level names to quantiphyse.egg-info/top_level.txt 2025-09-08T16:39:47,086 reading manifest file 'quantiphyse.egg-info/SOURCES.txt' 2025-09-08T16:39:47,101 reading manifest template 'MANIFEST.in' 2025-09-08T16:39:47,163 warning: no files found matching '*.cc' under directory 'quantiphyse' 2025-09-08T16:39:47,204 adding license file 'LICENSE' 2025-09-08T16:39:47,217 writing manifest file 'quantiphyse.egg-info/SOURCES.txt' 2025-09-08T16:39:47,220 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'quantiphyse.packages.core.supervoxels.src' is absent from the `packages` configuration. 2025-09-08T16:39:47,220 !! 2025-09-08T16:39:47,220 ******************************************************************************** 2025-09-08T16:39:47,220 ############################ 2025-09-08T16:39:47,221 # Package would be ignored # 2025-09-08T16:39:47,221 ############################ 2025-09-08T16:39:47,221 Python recognizes 'quantiphyse.packages.core.supervoxels.src' as an importable package[^1], 2025-09-08T16:39:47,221 but it is absent from setuptools' `packages` configuration. 2025-09-08T16:39:47,221 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T16:39:47,221 package, please make sure that 'quantiphyse.packages.core.supervoxels.src' is explicitly added 2025-09-08T16:39:47,221 to the `packages` configuration field. 2025-09-08T16:39:47,221 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T16:39:47,221 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T16:39:47,221 instead of `find_packages(...)`/`find:`). 2025-09-08T16:39:47,222 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T16:39:47,222 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T16:39:47,222 If you don't want 'quantiphyse.packages.core.supervoxels.src' to be distributed and are 2025-09-08T16:39:47,222 already explicitly excluding 'quantiphyse.packages.core.supervoxels.src' via 2025-09-08T16:39:47,222 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T16:39:47,222 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T16:39:47,222 combination with a more fine grained `package-data` configuration. 2025-09-08T16:39:47,223 You can read more about "package data files" on setuptools documentation page: 2025-09-08T16:39:47,223 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T16:39:47,223 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T16:39:47,223 even if it does not contain any `.py` files. 2025-09-08T16:39:47,223 On the other hand, currently there is no concept of package data 2025-09-08T16:39:47,223 directory, all directories are treated like packages. 2025-09-08T16:39:47,223 ******************************************************************************** 2025-09-08T16:39:47,223 !! 2025-09-08T16:39:47,224 check.warn(importable) 2025-09-08T16:39:47,224 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'quantiphyse.packages.core.t1.src' is absent from the `packages` configuration. 2025-09-08T16:39:47,224 !! 2025-09-08T16:39:47,224 ******************************************************************************** 2025-09-08T16:39:47,224 ############################ 2025-09-08T16:39:47,224 # Package would be ignored # 2025-09-08T16:39:47,224 ############################ 2025-09-08T16:39:47,224 Python recognizes 'quantiphyse.packages.core.t1.src' as an importable package[^1], 2025-09-08T16:39:47,224 but it is absent from setuptools' `packages` configuration. 2025-09-08T16:39:47,225 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T16:39:47,225 package, please make sure that 'quantiphyse.packages.core.t1.src' is explicitly added 2025-09-08T16:39:47,225 to the `packages` configuration field. 2025-09-08T16:39:47,225 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T16:39:47,225 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T16:39:47,225 instead of `find_packages(...)`/`find:`). 2025-09-08T16:39:47,225 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T16:39:47,225 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T16:39:47,226 If you don't want 'quantiphyse.packages.core.t1.src' to be distributed and are 2025-09-08T16:39:47,226 already explicitly excluding 'quantiphyse.packages.core.t1.src' via 2025-09-08T16:39:47,226 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T16:39:47,226 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T16:39:47,226 combination with a more fine grained `package-data` configuration. 2025-09-08T16:39:47,226 You can read more about "package data files" on setuptools documentation page: 2025-09-08T16:39:47,226 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T16:39:47,227 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T16:39:47,227 even if it does not contain any `.py` files. 2025-09-08T16:39:47,227 On the other hand, currently there is no concept of package data 2025-09-08T16:39:47,227 directory, all directories are treated like packages. 2025-09-08T16:39:47,227 ******************************************************************************** 2025-09-08T16:39:47,227 !! 2025-09-08T16:39:47,227 check.warn(importable) 2025-09-08T16:39:47,227 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'quantiphyse.packages.core.t1.src.test' is absent from the `packages` configuration. 2025-09-08T16:39:47,227 !! 2025-09-08T16:39:47,228 ******************************************************************************** 2025-09-08T16:39:47,228 ############################ 2025-09-08T16:39:47,228 # Package would be ignored # 2025-09-08T16:39:47,228 ############################ 2025-09-08T16:39:47,228 Python recognizes 'quantiphyse.packages.core.t1.src.test' as an importable package[^1], 2025-09-08T16:39:47,228 but it is absent from setuptools' `packages` configuration. 2025-09-08T16:39:47,228 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T16:39:47,228 package, please make sure that 'quantiphyse.packages.core.t1.src.test' is explicitly added 2025-09-08T16:39:47,228 to the `packages` configuration field. 2025-09-08T16:39:47,228 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T16:39:47,229 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T16:39:47,229 instead of `find_packages(...)`/`find:`). 2025-09-08T16:39:47,229 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T16:39:47,229 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T16:39:47,229 If you don't want 'quantiphyse.packages.core.t1.src.test' to be distributed and are 2025-09-08T16:39:47,229 already explicitly excluding 'quantiphyse.packages.core.t1.src.test' via 2025-09-08T16:39:47,229 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T16:39:47,229 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T16:39:47,230 combination with a more fine grained `package-data` configuration. 2025-09-08T16:39:47,230 You can read more about "package data files" on setuptools documentation page: 2025-09-08T16:39:47,230 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T16:39:47,230 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T16:39:47,230 even if it does not contain any `.py` files. 2025-09-08T16:39:47,230 On the other hand, currently there is no concept of package data 2025-09-08T16:39:47,230 directory, all directories are treated like packages. 2025-09-08T16:39:47,230 ******************************************************************************** 2025-09-08T16:39:47,231 !! 2025-09-08T16:39:47,231 check.warn(importable) 2025-09-08T16:39:47,235 copying quantiphyse/icons/README.txt -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,235 copying quantiphyse/icons/batch.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,236 copying quantiphyse/icons/batch.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,236 copying quantiphyse/icons/bucket.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,237 copying quantiphyse/icons/bucket.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,237 copying quantiphyse/icons/cest.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,238 copying quantiphyse/icons/cest.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,238 copying quantiphyse/icons/citation.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,239 copying quantiphyse/icons/citation.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,239 copying quantiphyse/icons/clear.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,240 copying quantiphyse/icons/clear.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,240 copying quantiphyse/icons/close.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,241 copying quantiphyse/icons/close.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,241 copying quantiphyse/icons/clustering.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,242 copying quantiphyse/icons/clustering.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,242 copying quantiphyse/icons/compare.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,243 copying quantiphyse/icons/compare.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,244 copying quantiphyse/icons/console.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,244 copying quantiphyse/icons/console.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,245 copying quantiphyse/icons/crosshairs.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,245 copying quantiphyse/icons/crosshairs.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,246 copying quantiphyse/icons/curve_view.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,246 copying quantiphyse/icons/curve_view.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,247 copying quantiphyse/icons/data.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,248 copying quantiphyse/icons/data.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,248 copying quantiphyse/icons/double_icon.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,249 copying quantiphyse/icons/double_icon_store.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,250 copying quantiphyse/icons/down.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,250 copying quantiphyse/icons/down.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,251 copying quantiphyse/icons/edit.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,251 copying quantiphyse/icons/edit.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,252 copying quantiphyse/icons/ellipse.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,252 copying quantiphyse/icons/ellipse.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,253 copying quantiphyse/icons/eraser.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,253 copying quantiphyse/icons/eraser.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,254 copying quantiphyse/icons/fabber_usage.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,256 copying quantiphyse/icons/image_export.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,256 copying quantiphyse/icons/image_export.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,257 copying quantiphyse/icons/inspect.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,257 copying quantiphyse/icons/inspect.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,258 copying quantiphyse/icons/levels.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,258 copying quantiphyse/icons/levels.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,259 copying quantiphyse/icons/main_data.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,259 copying quantiphyse/icons/main_data.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,260 copying quantiphyse/icons/main_icon.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,260 copying quantiphyse/icons/main_icon.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,261 copying quantiphyse/icons/main_icon_store.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,262 copying quantiphyse/icons/main_ovl.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,262 copying quantiphyse/icons/main_ovl.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,263 copying quantiphyse/icons/maths.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,263 copying quantiphyse/icons/maths.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,264 copying quantiphyse/icons/meanvals.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,264 copying quantiphyse/icons/meanvals.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,265 copying quantiphyse/icons/options.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,265 copying quantiphyse/icons/options.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,266 copying quantiphyse/icons/package.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,266 copying quantiphyse/icons/package.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,267 copying quantiphyse/icons/painter.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,267 copying quantiphyse/icons/painter.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,269 copying quantiphyse/icons/path4134.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,269 copying quantiphyse/icons/pen.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,270 copying quantiphyse/icons/pen.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,270 copying quantiphyse/icons/pencil.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,271 copying quantiphyse/icons/pencil.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,271 copying quantiphyse/icons/pick.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,272 copying quantiphyse/icons/pick.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,272 copying quantiphyse/icons/picture.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,273 copying quantiphyse/icons/picture.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,273 copying quantiphyse/icons/pk.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,274 copying quantiphyse/icons/pk.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,274 copying quantiphyse/icons/polygon.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,275 copying quantiphyse/icons/polygon.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,275 copying quantiphyse/icons/quantiphyse.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,276 copying quantiphyse/icons/quantiphyse.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,277 copying quantiphyse/icons/quantiphyse_100.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,277 copying quantiphyse/icons/quantiphyse_125.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,278 copying quantiphyse/icons/quantiphyse_75.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,279 copying quantiphyse/icons/question-mark.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,279 copying quantiphyse/icons/question-mark.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,280 copying quantiphyse/icons/rect2987.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,280 copying quantiphyse/icons/rectangle.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,281 copying quantiphyse/icons/rectangle.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,281 copying quantiphyse/icons/reg.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,282 copying quantiphyse/icons/reg.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,282 copying quantiphyse/icons/resample.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,283 copying quantiphyse/icons/resample.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,283 copying quantiphyse/icons/roi.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,284 copying quantiphyse/icons/roi.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,284 copying quantiphyse/icons/roi2.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,285 copying quantiphyse/icons/roi_builder.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,285 copying quantiphyse/icons/roi_builder.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,286 copying quantiphyse/icons/roi_data.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,286 copying quantiphyse/icons/roi_data.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,287 copying quantiphyse/icons/sv.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,287 copying quantiphyse/icons/sv.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,288 copying quantiphyse/icons/t10.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,288 copying quantiphyse/icons/t10.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,289 copying quantiphyse/icons/up.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,289 copying quantiphyse/icons/up.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,290 copying quantiphyse/icons/visible.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,290 copying quantiphyse/icons/visible.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,291 copying quantiphyse/icons/volumes.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,291 copying quantiphyse/icons/volumes.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,292 copying quantiphyse/icons/voxel.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,293 copying quantiphyse/icons/voxel.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,293 copying quantiphyse/icons/voxel_scaling_off.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,294 copying quantiphyse/icons/voxel_scaling_on.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,294 copying quantiphyse/icons/walker.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,295 copying quantiphyse/icons/walker.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/icons 2025-09-08T16:39:47,295 copying quantiphyse/resources/checkbox.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/resources 2025-09-08T16:39:47,296 copying quantiphyse/resources/darkorange.stylesheet -> build/lib.linux-armv7l-cpython-313/quantiphyse/resources 2025-09-08T16:39:47,296 copying quantiphyse/resources/down_arrow.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/resources 2025-09-08T16:39:47,297 copying quantiphyse/resources/handle.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/resources 2025-09-08T16:39:47,297 copying quantiphyse/packages/core/t1/t1_model.cpp -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1 2025-09-08T16:39:47,299 copying quantiphyse/packages/core/t1/t1_model.pyx -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1 2025-09-08T16:39:47,300 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1/src 2025-09-08T16:39:47,300 copying quantiphyse/packages/core/t1/src/T10_calculation.cpp -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1/src 2025-09-08T16:39:47,301 copying quantiphyse/packages/core/t1/src/T10_calculation.h -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1/src 2025-09-08T16:39:47,301 copying quantiphyse/packages/core/t1/src/linear_regression.cpp -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1/src 2025-09-08T16:39:47,302 copying quantiphyse/packages/core/t1/src/linear_regression.h -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1/src 2025-09-08T16:39:47,302 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1/src/test 2025-09-08T16:39:47,303 copying quantiphyse/packages/core/t1/src/test/CMakeLists.txt -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1/src/test 2025-09-08T16:39:47,303 copying quantiphyse/packages/core/t1/src/test/example.cpp -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/t1/src/test 2025-09-08T16:39:47,304 copying quantiphyse/packages/core/smoothing/smooth.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/smoothing 2025-09-08T16:39:47,304 copying quantiphyse/packages/core/smoothing/smooth.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/smoothing 2025-09-08T16:39:47,305 copying quantiphyse/packages/core/radialprofile/rp.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/radialprofile 2025-09-08T16:39:47,305 copying quantiphyse/packages/core/radialprofile/rp.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/radialprofile 2025-09-08T16:39:47,306 copying quantiphyse/packages/core/pca/pca.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/pca 2025-09-08T16:39:47,306 copying quantiphyse/packages/core/pca/pca.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/pca 2025-09-08T16:39:47,307 creating build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/src 2025-09-08T16:39:47,307 copying quantiphyse/packages/core/supervoxels/src/processing.cpp -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/src 2025-09-08T16:39:47,308 copying quantiphyse/packages/core/supervoxels/src/processing.h -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/src 2025-09-08T16:39:47,308 copying quantiphyse/packages/core/histogram/hist.png -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/histogram 2025-09-08T16:39:47,309 copying quantiphyse/packages/core/histogram/hist.svg -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/histogram 2025-09-08T16:39:47,309 copying quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.c -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic 2025-09-08T16:39:47,315 copying quantiphyse/packages/core/supervoxels/perfusionslic/_slic_feat.pyx -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic 2025-09-08T16:39:47,316 copying quantiphyse/packages/core/supervoxels/perfusionslic/additional/bspline_smoothing.c -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic/additional 2025-09-08T16:39:47,321 copying quantiphyse/packages/core/supervoxels/perfusionslic/additional/bspline_smoothing.pyx -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic/additional 2025-09-08T16:39:47,321 copying quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.c -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic/additional 2025-09-08T16:39:47,326 copying quantiphyse/packages/core/supervoxels/perfusionslic/additional/create_im.pyx -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic/additional 2025-09-08T16:39:47,327 copying quantiphyse/packages/core/supervoxels/perfusionslic/additional/processing.cpp -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic/additional 2025-09-08T16:39:47,329 copying quantiphyse/packages/core/supervoxels/perfusionslic/additional/processing.pyx -> build/lib.linux-armv7l-cpython-313/quantiphyse/packages/core/supervoxels/perfusionslic/additional 2025-09-08T16:39:47,336 running build_ext 2025-09-08T16:39:47,344 building 'quantiphyse.packages.core.t1.t1_model' extension 2025-09-08T16:39:47,346 creating build/temp.linux-armv7l-cpython-313/quantiphyse/packages/core/t1/src 2025-09-08T16:39:47,347 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iquantiphyse/packages/core/t1/src/ -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c quantiphyse/packages/core/t1/src/T10_calculation.cpp -o build/temp.linux-armv7l-cpython-313/quantiphyse/packages/core/t1/src/T10_calculation.o 2025-09-08T16:39:48,129 In file included from quantiphyse/packages/core/t1/src/T10_calculation.cpp:5: 2025-09-08T16:39:48,129 quantiphyse/packages/core/t1/src/T10_calculation.h:11:16: error: conflicting declaration ‘typedef size_t ulong’ 2025-09-08T16:39:48,129 11 | typedef size_t ulong; 2025-09-08T16:39:48,129 | ^~~~~ 2025-09-08T16:39:48,129 In file included from quantiphyse/packages/core/t1/src/T10_calculation.h:8: 2025-09-08T16:39:48,130 /usr/include/arm-linux-gnueabihf/sys/types.h:148:27: note: previous declaration as ‘typedef long unsigned int ulong’ 2025-09-08T16:39:48,130 148 | typedef unsigned long int ulong; 2025-09-08T16:39:48,130 | ^~~~~ 2025-09-08T16:39:49,203 quantiphyse/packages/core/t1/src/T10_calculation.cpp: In function ‘double T10_single_linear(std::vector&, std::vector&, ulong, double)’: 2025-09-08T16:39:49,203 quantiphyse/packages/core/t1/src/T10_calculation.cpp:54:42: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 2025-09-08T16:39:49,203 54 | pair ab = linreg(y, x); 2025-09-08T16:39:49,203 | ^ 2025-09-08T16:39:49,227 error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1 2025-09-08T16:39:49,402 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T16:39:49,414 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T16:39:49,414 exec(compile('"'"''"'"''"'"' 2025-09-08T16:39:49,414 # This is -- a caller that pip uses to run setup.py 2025-09-08T16:39:49,414 # 2025-09-08T16:39:49,414 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T16:39:49,414 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T16:39:49,414 # - It provides a clear error message when setuptools is not installed. 2025-09-08T16:39:49,414 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T16:39:49,414 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T16:39:49,414 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T16:39:49,414 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T16:39:49,414 import os, sys, tokenize, traceback 2025-09-08T16:39:49,414 2025-09-08T16:39:49,414 try: 2025-09-08T16:39:49,414 import setuptools 2025-09-08T16:39:49,414 except ImportError: 2025-09-08T16:39:49,414 print( 2025-09-08T16:39:49,414 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T16:39:49,414 "the build environment with exception:", 2025-09-08T16:39:49,414 file=sys.stderr, 2025-09-08T16:39:49,414 ) 2025-09-08T16:39:49,414 traceback.print_exc() 2025-09-08T16:39:49,414 sys.exit(1) 2025-09-08T16:39:49,414 2025-09-08T16:39:49,414 __file__ = %r 2025-09-08T16:39:49,414 sys.argv[0] = __file__ 2025-09-08T16:39:49,414 2025-09-08T16:39:49,414 if os.path.exists(__file__): 2025-09-08T16:39:49,414 filename = __file__ 2025-09-08T16:39:49,414 with tokenize.open(__file__) as f: 2025-09-08T16:39:49,414 setup_py_code = f.read() 2025-09-08T16:39:49,414 else: 2025-09-08T16:39:49,414 filename = "" 2025-09-08T16:39:49,414 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T16:39:49,414 2025-09-08T16:39:49,414 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T16:39:49,414 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ri6_n1nt/quantiphyse_20795f89c6e54e50aeea4b21f2051969/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-lkpmte17[/] 2025-09-08T16:39:49,414 [bold magenta]cwd[/]: /tmp/pip-wheel-ri6_n1nt/quantiphyse_20795f89c6e54e50aeea4b21f2051969/ 2025-09-08T16:39:49,415 Building wheel for quantiphyse (setup.py): finished with status 'error' 2025-09-08T16:39:49,415 ERROR: Failed building wheel for quantiphyse 2025-09-08T16:39:49,416 Running setup.py clean for quantiphyse 2025-09-08T16:39:49,417 Running command python setup.py clean 2025-09-08T16:39:50,337 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T16:39:50,338 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T16:39:50,345 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T16:39:50,346 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T16:39:51,109 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T16:39:51,109 !! 2025-09-08T16:39:51,109 ******************************************************************************** 2025-09-08T16:39:51,109 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T16:39:51,109 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T16:39:51,109 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T16:39:51,109 or your builds will no longer be supported. 2025-09-08T16:39:51,110 ******************************************************************************** 2025-09-08T16:39:51,110 !! 2025-09-08T16:39:51,110 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T16:39:51,446 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T16:39:51,446 !! 2025-09-08T16:39:51,446 ******************************************************************************** 2025-09-08T16:39:51,446 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T16:39:51,446 License :: Free for non-commercial use 2025-09-08T16:39:51,446 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T16:39:51,447 ******************************************************************************** 2025-09-08T16:39:51,447 !! 2025-09-08T16:39:51,447 self._finalize_license_expression() 2025-09-08T16:39:51,531 running clean 2025-09-08T16:39:51,678 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T16:39:51,678 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T16:39:51,690 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T16:39:51,690 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T16:39:51,690 removing 'build' 2025-09-08T16:39:51,862 Failed to build quantiphyse 2025-09-08T16:39:51,863 ERROR: Failed to build one or more wheels 2025-09-08T16:39:51,864 Exception information: 2025-09-08T16:39:51,864 Traceback (most recent call last): 2025-09-08T16:39:51,864 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T16:39:51,864 status = _inner_run() 2025-09-08T16:39:51,864 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T16:39:51,864 return self.run(options, args) 2025-09-08T16:39:51,864 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T16:39:51,864 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T16:39:51,864 return func(self, options, args) 2025-09-08T16:39:51,864 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T16:39:51,864 raise CommandError("Failed to build one or more wheels") 2025-09-08T16:39:51,864 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T16:39:51,868 Removed build tracker: '/tmp/pip-build-tracker-e5jwwd86'