2025-09-08T16:24:25,162 Created temporary directory: /tmp/pip-build-tracker-hpirmsn6
2025-09-08T16:24:25,163 Initialized build tracking at /tmp/pip-build-tracker-hpirmsn6
2025-09-08T16:24:25,163 Created build tracker: /tmp/pip-build-tracker-hpirmsn6
2025-09-08T16:24:25,163 Entered build tracker: /tmp/pip-build-tracker-hpirmsn6
2025-09-08T16:24:25,164 Created temporary directory: /tmp/pip-wheel-do5ducwe
2025-09-08T16:24:25,167 Created temporary directory: /tmp/pip-ephem-wheel-cache-z8sixaqk
2025-09-08T16:24:25,224 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T16:24:25,227 2 location(s) to search for versions of compare-reads:
2025-09-08T16:24:25,227 * https://pypi.org/simple/compare-reads/
2025-09-08T16:24:25,227 * https://www.piwheels.org/simple/compare-reads/
2025-09-08T16:24:25,227 Fetching project page and analyzing links: https://pypi.org/simple/compare-reads/
2025-09-08T16:24:25,227 Getting page https://pypi.org/simple/compare-reads/
2025-09-08T16:24:25,228 Found index url https://pypi.org/simple/
2025-09-08T16:24:25,432 Fetched page https://pypi.org/simple/compare-reads/ as application/vnd.pypi.simple.v1+json
2025-09-08T16:24:25,439   Found link https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 0.0.0
2025-09-08T16:24:25,439   Found link https://files.pythonhosted.org/packages/72/64/1366b20e77d55b4277a02b3015b72c81a40705128311898f17bc1d2cd261/compare-reads-0.0.1.tar.gz (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 0.0.1
2025-09-08T16:24:25,440   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/6d/ed/427b56f3d3ec34bb0bcd08bc20a10c7357cb54520af28d2b48c69c6aa27e/compare_reads-0.0.1-cp27-cp27m-macosx_10_6_intel.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,440   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/80/39/821df71efdefedde84e5b4e864ffc2f37a5397a4efebd6d4c95a24357a9e/compare_reads-0.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,441   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/a7/e3/afbcba872088f01073254d7d2b1e0ce96816353e7a5693f634a586d7b43e/compare_reads-0.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,441   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/e6/e1/9ecdb42750123ead9f7b5856daeccfbe8c6dd076fc592dbfb1bfa27e210b/compare_reads-0.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,441   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/8b/49/9bb089dfa181c376f5ed74dd8597d576fb5574668cacef326682bbf909a5/compare_reads-0.0.1-cp36-cp36m-macosx_10_6_intel.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,442   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/ba/4e/b4d0336569d7898aed9eb879f211f69661fb7347876a9a0b69f9c39e5aff/compare_reads-0.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,442   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/db/5e/e05f247c44e89224cb4aaf28a6b62b0ba06fc0e07544a0822d4fc2eafa96/compare_reads-0.0.1-cp37-cp37m-macosx_10_6_intel.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,442   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/54/a9/dea8942b4ac2ef17c6c7afdce1d28bb549682e29255618c2d612649f8f76/compare_reads-0.0.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,443 Fetching project page and analyzing links: https://www.piwheels.org/simple/compare-reads/
2025-09-08T16:24:25,443 Getting page https://www.piwheels.org/simple/compare-reads/
2025-09-08T16:24:25,445 Found index url https://www.piwheels.org/simple/
2025-09-08T16:24:25,538 Fetched page https://www.piwheels.org/simple/compare-reads/ as text/html
2025-09-08T16:24:25,542   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp39-cp39-linux_armv6l.whl#sha256=d98030ce2a08e81dbb08a24cc7a5fb7269dc1ebf4197b923fcc42700ffc03fcb (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,543   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp39-cp39-linux_armv7l.whl#sha256=d98030ce2a08e81dbb08a24cc7a5fb7269dc1ebf4197b923fcc42700ffc03fcb (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,543   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp37-cp37m-linux_armv6l.whl#sha256=3ebdaa5eabbde951e3786336da6c19fb0a8e9188fa92ed51f5a8178b942de61f (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,543   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp37-cp37m-linux_armv7l.whl#sha256=3ebdaa5eabbde951e3786336da6c19fb0a8e9188fa92ed51f5a8178b942de61f (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,543   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp34-cp34m-linux_armv7l.whl#sha256=f88b17bf210558a20d2b50d3c9020f1846c970b49699601e2f2959ad0a05ca07 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,543   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp34-cp34m-linux_armv6l.whl#sha256=f88b17bf210558a20d2b50d3c9020f1846c970b49699601e2f2959ad0a05ca07 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,543   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=a02971028330da741ca1400412ec767f2c0932b6e9ceea073f466f62c7d0aa40 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,543   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=a02971028330da741ca1400412ec767f2c0932b6e9ceea073f466f62c7d0aa40 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,543   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp311-cp311-linux_armv6l.whl#sha256=c7d0d3695e6dbd38ae3409d47afa2a52e431c4b9851158ef4b1062298b450d14 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,544   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp311-cp311-linux_armv7l.whl#sha256=c7d0d3695e6dbd38ae3409d47afa2a52e431c4b9851158ef4b1062298b450d14 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,544   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp39-cp39-linux_armv6l.whl#sha256=c339bf70f7618bbdb367cba8a19760a7489fbddce98d940870cdcd93a0c747da (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,544   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp39-cp39-linux_armv7l.whl#sha256=c339bf70f7618bbdb367cba8a19760a7489fbddce98d940870cdcd93a0c747da (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,544   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=072a516562b024c76fafac72cac908465a4e81d9b7ed8b06c0c6fb8157944c8d (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,544   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=072a516562b024c76fafac72cac908465a4e81d9b7ed8b06c0c6fb8157944c8d (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,544   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp34-cp34m-linux_armv7l.whl#sha256=890999176564f850dfccb60c65ecfd0ee855d1e8714aebcb71d231752b6b344b (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,544   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp34-cp34m-linux_armv6l.whl#sha256=890999176564f850dfccb60c65ecfd0ee855d1e8714aebcb71d231752b6b344b (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,544   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp35-cp35m-linux_armv6l.whl#sha256=dfdc09dc202249b6ef89b3b7b26ccb1dc12a3a5b4817feb9277062168d2ac3b7 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,545   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=dfdc09dc202249b6ef89b3b7b26ccb1dc12a3a5b4817feb9277062168d2ac3b7 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,545   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp311-cp311-linux_armv6l.whl#sha256=612622231d2bd37be389bdbdd3c75fee191f514fa8c4cea428bb6f67207adb4f (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,545   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp311-cp311-linux_armv7l.whl#sha256=612622231d2bd37be389bdbdd3c75fee191f514fa8c4cea428bb6f67207adb4f (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:25,545 Skipping link: not a file: https://www.piwheels.org/simple/compare-reads/
2025-09-08T16:24:25,545 Skipping link: not a file: https://pypi.org/simple/compare-reads/
2025-09-08T16:24:25,568 Given no hashes to check 1 links for project 'compare-reads': discarding no candidates
2025-09-08T16:24:25,570 Collecting compare-reads==0.0.0
2025-09-08T16:24:25,571   Created temporary directory: /tmp/pip-unpack-y_6ts0f0
2025-09-08T16:24:25,708   Downloading compare-reads-0.0.0.tar.gz (46 kB)
2025-09-08T16:24:25,766   Added compare-reads==0.0.0 from https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-hpirmsn6'
2025-09-08T16:24:25,768   Running setup.py (path:/tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/setup.py) egg_info for package compare-reads
2025-09-08T16:24:25,768   Created temporary directory: /tmp/pip-pip-egg-info-nc4opa3k
2025-09-08T16:24:25,768   Preparing metadata (setup.py): started
2025-09-08T16:24:25,769   Running command python setup.py egg_info
2025-09-08T16:24:26,497   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T16:24:26,497   !!

2025-09-08T16:24:26,497           ********************************************************************************
2025-09-08T16:24:26,497           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T16:24:26,498           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T16:24:26,498           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T16:24:26,498           or your builds will no longer be supported.
2025-09-08T16:24:26,498           ********************************************************************************

2025-09-08T16:24:26,498   !!
2025-09-08T16:24:26,498     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T16:41:42,692   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T16:41:42,692   !!

2025-09-08T16:41:42,693           ********************************************************************************
2025-09-08T16:41:42,693           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T16:41:42,693           License :: OSI Approved :: MIT License

2025-09-08T16:41:42,693           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T16:41:42,693           ********************************************************************************

2025-09-08T16:41:42,693   !!
2025-09-08T16:41:42,693     self._finalize_license_expression()
2025-09-08T16:41:42,767   running egg_info
2025-09-08T16:41:42,842   creating /tmp/pip-pip-egg-info-nc4opa3k/compare_reads.egg-info
2025-09-08T16:41:42,842   writing /tmp/pip-pip-egg-info-nc4opa3k/compare_reads.egg-info/PKG-INFO
2025-09-08T16:41:42,844   writing dependency_links to /tmp/pip-pip-egg-info-nc4opa3k/compare_reads.egg-info/dependency_links.txt
2025-09-08T16:41:42,844   writing requirements to /tmp/pip-pip-egg-info-nc4opa3k/compare_reads.egg-info/requires.txt
2025-09-08T16:41:42,844   writing top-level names to /tmp/pip-pip-egg-info-nc4opa3k/compare_reads.egg-info/top_level.txt
2025-09-08T16:41:42,845   writing manifest file '/tmp/pip-pip-egg-info-nc4opa3k/compare_reads.egg-info/SOURCES.txt'
2025-09-08T16:41:43,071   reading manifest file '/tmp/pip-pip-egg-info-nc4opa3k/compare_reads.egg-info/SOURCES.txt'
2025-09-08T16:41:43,072   reading manifest template 'MANIFEST.in'
2025-09-08T16:41:43,075   warning: no files found matching 'appveyor.yml'
2025-09-08T16:41:43,076   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-09-08T16:41:43,076   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2025-09-08T16:41:43,077   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-09-08T16:41:43,077   warning: no previously-included files matching '*.dylib' found anywhere in distribution
2025-09-08T16:41:43,077   adding license file 'LICENSE'
2025-09-08T16:41:43,077   adding license file 'AUTHORS.rst'
2025-09-08T16:41:43,081   writing manifest file '/tmp/pip-pip-egg-info-nc4opa3k/compare_reads.egg-info/SOURCES.txt'
2025-09-08T16:41:43,195   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T16:41:43,201   Source in /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c has version 0.0.0, which satisfies requirement compare-reads==0.0.0 from https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz
2025-09-08T16:41:43,201   Removed compare-reads==0.0.0 from https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-hpirmsn6'
2025-09-08T16:41:43,208 Created temporary directory: /tmp/pip-unpack-r5ow8qlg
2025-09-08T16:41:43,208 Created temporary directory: /tmp/pip-unpack-i7zwqn43
2025-09-08T16:41:43,208 Building wheels for collected packages: compare-reads
2025-09-08T16:41:43,209   Created temporary directory: /tmp/pip-wheel-v2pb6c67
2025-09-08T16:41:43,210   DEPRECATION: Building 'compare-reads' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'compare-reads'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T16:41:43,211   Building wheel for compare-reads (setup.py): started
2025-09-08T16:41:43,212   Destination directory: /tmp/pip-wheel-v2pb6c67
2025-09-08T16:41:43,212   Running command python setup.py bdist_wheel
2025-09-08T16:41:43,937   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T16:41:43,937   !!

2025-09-08T16:41:43,937           ********************************************************************************
2025-09-08T16:41:43,937           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T16:41:43,938           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T16:41:43,938           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T16:41:43,938           or your builds will no longer be supported.
2025-09-08T16:41:43,938           ********************************************************************************

2025-09-08T16:41:43,938   !!
2025-09-08T16:41:43,938     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T16:41:44,788   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T16:41:44,788   !!

2025-09-08T16:41:44,789           ********************************************************************************
2025-09-08T16:41:44,789           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T16:41:44,789           License :: OSI Approved :: MIT License

2025-09-08T16:41:44,789           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T16:41:44,789           ********************************************************************************

2025-09-08T16:41:44,789   !!
2025-09-08T16:41:44,789     self._finalize_license_expression()
2025-09-08T16:41:44,790   running bdist_wheel
2025-09-08T16:41:45,094   running build
2025-09-08T16:41:45,094   running build_py
2025-09-08T16:41:45,173   creating build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:45,173   copying src/compare_reads/__init__.py -> build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:45,174   running egg_info
2025-09-08T16:41:45,249   writing src/compare_reads.egg-info/PKG-INFO
2025-09-08T16:41:45,250   writing dependency_links to src/compare_reads.egg-info/dependency_links.txt
2025-09-08T16:41:45,251   writing requirements to src/compare_reads.egg-info/requires.txt
2025-09-08T16:41:45,251   writing top-level names to src/compare_reads.egg-info/top_level.txt
2025-09-08T16:41:45,328   reading manifest file 'src/compare_reads.egg-info/SOURCES.txt'
2025-09-08T16:41:45,331   reading manifest template 'MANIFEST.in'
2025-09-08T16:41:45,335   warning: no files found matching 'appveyor.yml'
2025-09-08T16:41:45,335   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-09-08T16:41:45,336   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2025-09-08T16:41:45,336   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-09-08T16:41:45,337   warning: no previously-included files matching '*.dylib' found anywhere in distribution
2025-09-08T16:41:45,337   adding license file 'LICENSE'
2025-09-08T16:41:45,337   adding license file 'AUTHORS.rst'
2025-09-08T16:41:45,341   writing manifest file 'src/compare_reads.egg-info/SOURCES.txt'
2025-09-08T16:41:45,342   copying src/compare_reads/_compare_reads.c -> build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:45,344   copying src/compare_reads/_compare_reads.pxd -> build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:45,344   copying src/compare_reads/_compare_reads.pyx -> build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:45,345   copying src/compare_reads/strnum_cmp.c -> build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:45,345   running build_ext
2025-09-08T16:41:46,363   Compiling src/compare_reads/_compare_reads.pyx because it changed.
2025-09-08T16:41:46,363   [1/1] Cythonizing src/compare_reads/_compare_reads.pyx
2025-09-08T16:41:49,042   building 'compare_reads._compare_reads' extension
2025-09-08T16:41:49,043   creating build/temp.linux-armv7l-cpython-313/src/compare_reads
2025-09-08T16:41:49,043   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc/compare_reads -I/usr/include/python3.13 -I/tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam -I/tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib -I/tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/samtools -c src/compare_reads/_compare_reads.c -o build/temp.linux-armv7l-cpython-313/src/compare_reads/_compare_reads.o
2025-09-08T16:41:49,979   In file included from /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/pysam_stream.h:4,
2025-09-08T16:41:49,979                    from src/compare_reads/_compare_reads.c:1209:
2025-09-08T16:41:49,979   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:190:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
2025-09-08T16:41:49,980     190 |         SCOPE int kseq_read(kseq_t *seq) \
2025-09-08T16:41:49,980         |                   ^~~~~~~~~
2025-09-08T16:41:49,980   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:244:9: note: in expansion of macro ‘__KSEQ_READ’
2025-09-08T16:41:49,980     244 |         __KSEQ_READ(SCOPE)
2025-09-08T16:41:49,980         |         ^~~~~~~~~~~
2025-09-08T16:41:49,980   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2025-09-08T16:41:49,980     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2025-09-08T16:41:49,980         |                                   ^~~~~~~~~~
2025-09-08T16:41:49,980   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2025-09-08T16:41:49,981       9 | KSEQ_INIT(BGZF *, bgzf_read)
2025-09-08T16:41:49,981         | ^~~~~~~~~
2025-09-08T16:41:49,981   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:174:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
2025-09-08T16:41:49,981     174 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
2025-09-08T16:41:49,981         |                    ^~~~~~~~~~~~
2025-09-08T16:41:49,981   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:243:9: note: in expansion of macro ‘__KSEQ_BASIC’
2025-09-08T16:41:49,981     243 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
2025-09-08T16:41:49,981         |         ^~~~~~~~~~~~
2025-09-08T16:41:49,981   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2025-09-08T16:41:49,982     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2025-09-08T16:41:49,982         |                                   ^~~~~~~~~~
2025-09-08T16:41:49,982   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2025-09-08T16:41:49,982       9 | KSEQ_INIT(BGZF *, bgzf_read)
2025-09-08T16:41:49,982         | ^~~~~~~~~
2025-09-08T16:41:49,982   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:168:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
2025-09-08T16:41:49,982     168 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
2025-09-08T16:41:49,982         |                       ^~~~~~~~~
2025-09-08T16:41:49,982   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:243:9: note: in expansion of macro ‘__KSEQ_BASIC’
2025-09-08T16:41:49,982     243 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
2025-09-08T16:41:49,983         |         ^~~~~~~~~~~~
2025-09-08T16:41:49,983   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2025-09-08T16:41:49,983     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2025-09-08T16:41:49,983         |                                   ^~~~~~~~~~
2025-09-08T16:41:49,983   /tmp/pip-wheel-do5ducwe/compare-reads_b37d6d4448ef4ac79087dd1136c1908c/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2025-09-08T16:41:49,983       9 | KSEQ_INIT(BGZF *, bgzf_read)
2025-09-08T16:41:49,983         | ^~~~~~~~~
2025-09-08T16:41:52,998   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/src/compare_reads/_compare_reads.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/compare_reads/_compare_reads.cpython-313-arm-linux-gnueabihf.so
2025-09-08T16:41:53,190   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T16:41:53,190   !!

2025-09-08T16:41:53,190           ********************************************************************************
2025-09-08T16:41:53,190           Please avoid running ``setup.py`` directly.
2025-09-08T16:41:53,190           Instead, use pypa/build, pypa/installer or other
2025-09-08T16:41:53,191           standards-based tools.

2025-09-08T16:41:53,191           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T16:41:53,191           or your builds will no longer be supported.

2025-09-08T16:41:53,191           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T16:41:53,191           ********************************************************************************

2025-09-08T16:41:53,191   !!
2025-09-08T16:41:53,191     self.initialize_options()
2025-09-08T16:41:53,267   installing to build/bdist.linux-armv7l/wheel
2025-09-08T16:41:53,267   running install
2025-09-08T16:41:53,289   running install_lib
2025-09-08T16:41:53,364   creating build/bdist.linux-armv7l/wheel
2025-09-08T16:41:53,364   creating build/bdist.linux-armv7l/wheel/compare_reads
2025-09-08T16:41:53,365   copying build/lib.linux-armv7l-cpython-313/compare_reads/_compare_reads.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:41:53,366   copying build/lib.linux-armv7l-cpython-313/compare_reads/strnum_cmp.c -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:41:53,366   copying build/lib.linux-armv7l-cpython-313/compare_reads/_compare_reads.pyx -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:41:53,367   copying build/lib.linux-armv7l-cpython-313/compare_reads/_compare_reads.pxd -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:41:53,367   copying build/lib.linux-armv7l-cpython-313/compare_reads/_compare_reads.c -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:41:53,368   copying build/lib.linux-armv7l-cpython-313/compare_reads/__init__.py -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:41:53,369   running install_egg_info
2025-09-08T16:41:53,449   Copying src/compare_reads.egg-info to build/bdist.linux-armv7l/wheel/./compare_reads-0.0.0-py3.13.egg-info
2025-09-08T16:41:53,451   running install_scripts
2025-09-08T16:41:53,506   creating build/bdist.linux-armv7l/wheel/compare_reads-0.0.0.dist-info/WHEEL
2025-09-08T16:41:53,507   creating '/tmp/pip-wheel-v2pb6c67/compare_reads-0.0.0-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-08T16:41:53,508   adding 'compare_reads/__init__.py'
2025-09-08T16:41:53,525   adding 'compare_reads/_compare_reads.c'
2025-09-08T16:41:53,569   adding 'compare_reads/_compare_reads.cpython-313-arm-linux-gnueabihf.so'
2025-09-08T16:41:53,571   adding 'compare_reads/_compare_reads.pxd'
2025-09-08T16:41:53,572   adding 'compare_reads/_compare_reads.pyx'
2025-09-08T16:41:53,572   adding 'compare_reads/strnum_cmp.c'
2025-09-08T16:41:53,573   adding 'compare_reads-0.0.0.dist-info/licenses/AUTHORS.rst'
2025-09-08T16:41:53,574   adding 'compare_reads-0.0.0.dist-info/licenses/LICENSE'
2025-09-08T16:41:53,575   adding 'compare_reads-0.0.0.dist-info/METADATA'
2025-09-08T16:41:53,575   adding 'compare_reads-0.0.0.dist-info/WHEEL'
2025-09-08T16:41:53,575   adding 'compare_reads-0.0.0.dist-info/top_level.txt'
2025-09-08T16:41:53,576   adding 'compare_reads-0.0.0.dist-info/RECORD'
2025-09-08T16:41:53,576   removing build/bdist.linux-armv7l/wheel
2025-09-08T16:41:53,995   Building wheel for compare-reads (setup.py): finished with status 'done'
2025-09-08T16:41:53,998   Created wheel for compare-reads: filename=compare_reads-0.0.0-cp313-cp313-linux_armv7l.whl size=130474 sha256=83f123fa6c5e2d1a2afac19537afe2400b7c731a5184af18e1281142d5176856
2025-09-08T16:41:53,999   Stored in directory: /tmp/pip-ephem-wheel-cache-z8sixaqk/wheels/e2/6b/81/f66902099244d18f982fa2bdf17b1f58e4c082e1db3283ebe2
2025-09-08T16:41:54,008 Successfully built compare-reads
2025-09-08T16:41:54,010 Removed build tracker: '/tmp/pip-build-tracker-hpirmsn6'