2025-09-08T16:24:38,814 Created temporary directory: /tmp/pip-build-tracker-xhe09cst
2025-09-08T16:24:38,815 Initialized build tracking at /tmp/pip-build-tracker-xhe09cst
2025-09-08T16:24:38,815 Created build tracker: /tmp/pip-build-tracker-xhe09cst
2025-09-08T16:24:38,815 Entered build tracker: /tmp/pip-build-tracker-xhe09cst
2025-09-08T16:24:38,815 Created temporary directory: /tmp/pip-wheel-tae9lf3p
2025-09-08T16:24:38,818 Created temporary directory: /tmp/pip-ephem-wheel-cache-3lbyh2me
2025-09-08T16:24:38,878 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T16:24:38,881 2 location(s) to search for versions of compare-reads:
2025-09-08T16:24:38,881 * https://pypi.org/simple/compare-reads/
2025-09-08T16:24:38,881 * https://www.piwheels.org/simple/compare-reads/
2025-09-08T16:24:38,881 Fetching project page and analyzing links: https://pypi.org/simple/compare-reads/
2025-09-08T16:24:38,882 Getting page https://pypi.org/simple/compare-reads/
2025-09-08T16:24:38,883 Found index url https://pypi.org/simple/
2025-09-08T16:24:38,953 Fetched page https://pypi.org/simple/compare-reads/ as application/vnd.pypi.simple.v1+json
2025-09-08T16:24:38,957   Found link https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 0.0.0
2025-09-08T16:24:38,957   Found link https://files.pythonhosted.org/packages/72/64/1366b20e77d55b4277a02b3015b72c81a40705128311898f17bc1d2cd261/compare-reads-0.0.1.tar.gz (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 0.0.1
2025-09-08T16:24:38,957   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/6d/ed/427b56f3d3ec34bb0bcd08bc20a10c7357cb54520af28d2b48c69c6aa27e/compare_reads-0.0.1-cp27-cp27m-macosx_10_6_intel.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:38,957   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/80/39/821df71efdefedde84e5b4e864ffc2f37a5397a4efebd6d4c95a24357a9e/compare_reads-0.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:38,958   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/a7/e3/afbcba872088f01073254d7d2b1e0ce96816353e7a5693f634a586d7b43e/compare_reads-0.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:38,958   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/e6/e1/9ecdb42750123ead9f7b5856daeccfbe8c6dd076fc592dbfb1bfa27e210b/compare_reads-0.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:38,958   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/8b/49/9bb089dfa181c376f5ed74dd8597d576fb5574668cacef326682bbf909a5/compare_reads-0.0.1-cp36-cp36m-macosx_10_6_intel.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:38,958   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/ba/4e/b4d0336569d7898aed9eb879f211f69661fb7347876a9a0b69f9c39e5aff/compare_reads-0.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:38,958   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/db/5e/e05f247c44e89224cb4aaf28a6b62b0ba06fc0e07544a0822d4fc2eafa96/compare_reads-0.0.1-cp37-cp37m-macosx_10_6_intel.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:38,958   Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/54/a9/dea8942b4ac2ef17c6c7afdce1d28bb549682e29255618c2d612649f8f76/compare_reads-0.0.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:38,959 Fetching project page and analyzing links: https://www.piwheels.org/simple/compare-reads/
2025-09-08T16:24:38,959 Getting page https://www.piwheels.org/simple/compare-reads/
2025-09-08T16:24:38,960 Found index url https://www.piwheels.org/simple/
2025-09-08T16:24:39,046 Fetched page https://www.piwheels.org/simple/compare-reads/ as text/html
2025-09-08T16:24:39,050   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp39-cp39-linux_armv6l.whl#sha256=d98030ce2a08e81dbb08a24cc7a5fb7269dc1ebf4197b923fcc42700ffc03fcb (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,051   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp39-cp39-linux_armv7l.whl#sha256=d98030ce2a08e81dbb08a24cc7a5fb7269dc1ebf4197b923fcc42700ffc03fcb (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,051   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp37-cp37m-linux_armv6l.whl#sha256=3ebdaa5eabbde951e3786336da6c19fb0a8e9188fa92ed51f5a8178b942de61f (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,051   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp37-cp37m-linux_armv7l.whl#sha256=3ebdaa5eabbde951e3786336da6c19fb0a8e9188fa92ed51f5a8178b942de61f (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,051   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp34-cp34m-linux_armv7l.whl#sha256=f88b17bf210558a20d2b50d3c9020f1846c970b49699601e2f2959ad0a05ca07 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,051   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp34-cp34m-linux_armv6l.whl#sha256=f88b17bf210558a20d2b50d3c9020f1846c970b49699601e2f2959ad0a05ca07 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,051   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=a02971028330da741ca1400412ec767f2c0932b6e9ceea073f466f62c7d0aa40 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,051   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=a02971028330da741ca1400412ec767f2c0932b6e9ceea073f466f62c7d0aa40 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,051   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp311-cp311-linux_armv6l.whl#sha256=c7d0d3695e6dbd38ae3409d47afa2a52e431c4b9851158ef4b1062298b450d14 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,052   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp311-cp311-linux_armv7l.whl#sha256=c7d0d3695e6dbd38ae3409d47afa2a52e431c4b9851158ef4b1062298b450d14 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,052   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp39-cp39-linux_armv6l.whl#sha256=c339bf70f7618bbdb367cba8a19760a7489fbddce98d940870cdcd93a0c747da (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,052   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp39-cp39-linux_armv7l.whl#sha256=c339bf70f7618bbdb367cba8a19760a7489fbddce98d940870cdcd93a0c747da (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,052   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=072a516562b024c76fafac72cac908465a4e81d9b7ed8b06c0c6fb8157944c8d (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,052   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=072a516562b024c76fafac72cac908465a4e81d9b7ed8b06c0c6fb8157944c8d (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,052   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp34-cp34m-linux_armv7l.whl#sha256=890999176564f850dfccb60c65ecfd0ee855d1e8714aebcb71d231752b6b344b (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,052   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp34-cp34m-linux_armv6l.whl#sha256=890999176564f850dfccb60c65ecfd0ee855d1e8714aebcb71d231752b6b344b (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,052   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp35-cp35m-linux_armv6l.whl#sha256=dfdc09dc202249b6ef89b3b7b26ccb1dc12a3a5b4817feb9277062168d2ac3b7 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,052   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=dfdc09dc202249b6ef89b3b7b26ccb1dc12a3a5b4817feb9277062168d2ac3b7 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,053   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp311-cp311-linux_armv6l.whl#sha256=612622231d2bd37be389bdbdd3c75fee191f514fa8c4cea428bb6f67207adb4f (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,053   Skipping link: No binaries permitted for compare-reads: https://archive1.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp311-cp311-linux_armv7l.whl#sha256=612622231d2bd37be389bdbdd3c75fee191f514fa8c4cea428bb6f67207adb4f (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
2025-09-08T16:24:39,053 Skipping link: not a file: https://www.piwheels.org/simple/compare-reads/
2025-09-08T16:24:39,053 Skipping link: not a file: https://pypi.org/simple/compare-reads/
2025-09-08T16:24:39,075 Given no hashes to check 1 links for project 'compare-reads': discarding no candidates
2025-09-08T16:24:39,076 Collecting compare-reads==0.0.1
2025-09-08T16:24:39,078   Created temporary directory: /tmp/pip-unpack-l3lipyzq
2025-09-08T16:24:39,216   Downloading compare-reads-0.0.1.tar.gz (47 kB)
2025-09-08T16:24:39,273   Added compare-reads==0.0.1 from https://files.pythonhosted.org/packages/72/64/1366b20e77d55b4277a02b3015b72c81a40705128311898f17bc1d2cd261/compare-reads-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-xhe09cst'
2025-09-08T16:24:39,274   Running setup.py (path:/tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/setup.py) egg_info for package compare-reads
2025-09-08T16:24:39,274   Created temporary directory: /tmp/pip-pip-egg-info-yvby3sub
2025-09-08T16:24:39,274   Preparing metadata (setup.py): started
2025-09-08T16:24:39,275   Running command python setup.py egg_info
2025-09-08T16:24:39,929   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T16:24:39,930   !!

2025-09-08T16:24:39,930           ********************************************************************************
2025-09-08T16:24:39,930           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T16:24:39,930           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T16:24:39,930           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T16:24:39,930           or your builds will no longer be supported.
2025-09-08T16:24:39,930           ********************************************************************************

2025-09-08T16:24:39,931   !!
2025-09-08T16:24:39,931     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T16:41:53,275   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T16:41:53,275   !!

2025-09-08T16:41:53,275           ********************************************************************************
2025-09-08T16:41:53,275           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T16:41:53,275           License :: OSI Approved :: MIT License

2025-09-08T16:41:53,275           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T16:41:53,276           ********************************************************************************

2025-09-08T16:41:53,276   !!
2025-09-08T16:41:53,276     self._finalize_license_expression()
2025-09-08T16:41:53,350   running egg_info
2025-09-08T16:41:53,425   creating /tmp/pip-pip-egg-info-yvby3sub/compare_reads.egg-info
2025-09-08T16:41:53,425   writing /tmp/pip-pip-egg-info-yvby3sub/compare_reads.egg-info/PKG-INFO
2025-09-08T16:41:53,426   writing dependency_links to /tmp/pip-pip-egg-info-yvby3sub/compare_reads.egg-info/dependency_links.txt
2025-09-08T16:41:53,427   writing requirements to /tmp/pip-pip-egg-info-yvby3sub/compare_reads.egg-info/requires.txt
2025-09-08T16:41:53,427   writing top-level names to /tmp/pip-pip-egg-info-yvby3sub/compare_reads.egg-info/top_level.txt
2025-09-08T16:41:53,428   writing manifest file '/tmp/pip-pip-egg-info-yvby3sub/compare_reads.egg-info/SOURCES.txt'
2025-09-08T16:41:53,653   reading manifest file '/tmp/pip-pip-egg-info-yvby3sub/compare_reads.egg-info/SOURCES.txt'
2025-09-08T16:41:53,654   reading manifest template 'MANIFEST.in'
2025-09-08T16:41:53,657   warning: no files found matching 'appveyor.yml'
2025-09-08T16:41:53,658   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-09-08T16:41:53,659   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2025-09-08T16:41:53,659   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-09-08T16:41:53,660   warning: no previously-included files matching '*.dylib' found anywhere in distribution
2025-09-08T16:41:53,660   adding license file 'LICENSE'
2025-09-08T16:41:53,660   adding license file 'AUTHORS.rst'
2025-09-08T16:41:53,663   writing manifest file '/tmp/pip-pip-egg-info-yvby3sub/compare_reads.egg-info/SOURCES.txt'
2025-09-08T16:41:53,781   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T16:41:53,786   Source in /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6 has version 0.0.1, which satisfies requirement compare-reads==0.0.1 from https://files.pythonhosted.org/packages/72/64/1366b20e77d55b4277a02b3015b72c81a40705128311898f17bc1d2cd261/compare-reads-0.0.1.tar.gz
2025-09-08T16:41:53,787   Removed compare-reads==0.0.1 from https://files.pythonhosted.org/packages/72/64/1366b20e77d55b4277a02b3015b72c81a40705128311898f17bc1d2cd261/compare-reads-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-xhe09cst'
2025-09-08T16:41:53,793 Created temporary directory: /tmp/pip-unpack-4mvtk6i9
2025-09-08T16:41:53,793 Created temporary directory: /tmp/pip-unpack-kxslbqdd
2025-09-08T16:41:53,794 Building wheels for collected packages: compare-reads
2025-09-08T16:41:53,795   Created temporary directory: /tmp/pip-wheel-h5_9oner
2025-09-08T16:41:53,795   DEPRECATION: Building 'compare-reads' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'compare-reads'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T16:41:53,796   Building wheel for compare-reads (setup.py): started
2025-09-08T16:41:53,797   Destination directory: /tmp/pip-wheel-h5_9oner
2025-09-08T16:41:53,797   Running command python setup.py bdist_wheel
2025-09-08T16:41:54,517   /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2025-09-08T16:41:54,517   !!

2025-09-08T16:41:54,517           ********************************************************************************
2025-09-08T16:41:54,517           Requirements should be satisfied by a PEP 517 installer.
2025-09-08T16:41:54,517           If you are using pip, you can try `pip install --use-pep517`.

2025-09-08T16:41:54,517           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T16:41:54,518           or your builds will no longer be supported.
2025-09-08T16:41:54,518           ********************************************************************************

2025-09-08T16:41:54,518   !!
2025-09-08T16:41:54,518     dist.fetch_build_eggs(dist.setup_requires)
2025-09-08T16:41:55,388   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T16:41:55,388   !!

2025-09-08T16:41:55,388           ********************************************************************************
2025-09-08T16:41:55,388           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T16:41:55,388           License :: OSI Approved :: MIT License

2025-09-08T16:41:55,389           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T16:41:55,389           ********************************************************************************

2025-09-08T16:41:55,389   !!
2025-09-08T16:41:55,389     self._finalize_license_expression()
2025-09-08T16:41:55,389   running bdist_wheel
2025-09-08T16:41:55,694   running build
2025-09-08T16:41:55,695   running build_py
2025-09-08T16:41:55,773   creating build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:55,773   copying src/compare_reads/__init__.py -> build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:55,774   running egg_info
2025-09-08T16:41:55,850   writing src/compare_reads.egg-info/PKG-INFO
2025-09-08T16:41:55,851   writing dependency_links to src/compare_reads.egg-info/dependency_links.txt
2025-09-08T16:41:55,852   writing requirements to src/compare_reads.egg-info/requires.txt
2025-09-08T16:41:55,852   writing top-level names to src/compare_reads.egg-info/top_level.txt
2025-09-08T16:41:55,929   reading manifest file 'src/compare_reads.egg-info/SOURCES.txt'
2025-09-08T16:41:55,931   reading manifest template 'MANIFEST.in'
2025-09-08T16:41:55,935   warning: no files found matching 'appveyor.yml'
2025-09-08T16:41:55,935   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-09-08T16:41:55,936   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2025-09-08T16:41:55,936   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-09-08T16:41:55,937   warning: no previously-included files matching '*.dylib' found anywhere in distribution
2025-09-08T16:41:55,937   adding license file 'LICENSE'
2025-09-08T16:41:55,937   adding license file 'AUTHORS.rst'
2025-09-08T16:41:55,941   writing manifest file 'src/compare_reads.egg-info/SOURCES.txt'
2025-09-08T16:41:55,942   copying src/compare_reads/_compare_reads.c -> build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:55,944   copying src/compare_reads/_compare_reads.pxd -> build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:55,944   copying src/compare_reads/_compare_reads.pyx -> build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:55,945   copying src/compare_reads/strnum_cmp.c -> build/lib.linux-armv7l-cpython-313/compare_reads
2025-09-08T16:41:55,945   running build_ext
2025-09-08T16:41:57,009   Compiling src/compare_reads/_compare_reads.pyx because it changed.
2025-09-08T16:41:57,010   [1/1] Cythonizing src/compare_reads/_compare_reads.pyx
2025-09-08T16:41:59,704   building 'compare_reads._compare_reads' extension
2025-09-08T16:41:59,705   creating build/temp.linux-armv7l-cpython-313/src/compare_reads
2025-09-08T16:41:59,706   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc/compare_reads -I/usr/include/python3.13 -I/tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam -I/tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib -I/tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/samtools -c src/compare_reads/_compare_reads.c -o build/temp.linux-armv7l-cpython-313/src/compare_reads/_compare_reads.o
2025-09-08T16:42:00,630   In file included from /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/pysam_stream.h:4,
2025-09-08T16:42:00,631                    from src/compare_reads/_compare_reads.c:1209:
2025-09-08T16:42:00,631   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:190:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
2025-09-08T16:42:00,631     190 |         SCOPE int kseq_read(kseq_t *seq) \
2025-09-08T16:42:00,631         |                   ^~~~~~~~~
2025-09-08T16:42:00,631   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:244:9: note: in expansion of macro ‘__KSEQ_READ’
2025-09-08T16:42:00,631     244 |         __KSEQ_READ(SCOPE)
2025-09-08T16:42:00,631         |         ^~~~~~~~~~~
2025-09-08T16:42:00,631   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2025-09-08T16:42:00,632     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2025-09-08T16:42:00,632         |                                   ^~~~~~~~~~
2025-09-08T16:42:00,632   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2025-09-08T16:42:00,632       9 | KSEQ_INIT(BGZF *, bgzf_read)
2025-09-08T16:42:00,632         | ^~~~~~~~~
2025-09-08T16:42:00,632   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:174:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
2025-09-08T16:42:00,632     174 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
2025-09-08T16:42:00,632         |                    ^~~~~~~~~~~~
2025-09-08T16:42:00,632   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:243:9: note: in expansion of macro ‘__KSEQ_BASIC’
2025-09-08T16:42:00,632     243 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
2025-09-08T16:42:00,633         |         ^~~~~~~~~~~~
2025-09-08T16:42:00,633   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2025-09-08T16:42:00,633     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2025-09-08T16:42:00,633         |                                   ^~~~~~~~~~
2025-09-08T16:42:00,633   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2025-09-08T16:42:00,633       9 | KSEQ_INIT(BGZF *, bgzf_read)
2025-09-08T16:42:00,633         | ^~~~~~~~~
2025-09-08T16:42:00,633   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:168:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
2025-09-08T16:42:00,633     168 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
2025-09-08T16:42:00,633         |                       ^~~~~~~~~
2025-09-08T16:42:00,633   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:243:9: note: in expansion of macro ‘__KSEQ_BASIC’
2025-09-08T16:42:00,634     243 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
2025-09-08T16:42:00,634         |         ^~~~~~~~~~~~
2025-09-08T16:42:00,634   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2025-09-08T16:42:00,634     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2025-09-08T16:42:00,634         |                                   ^~~~~~~~~~
2025-09-08T16:42:00,634   /tmp/pip-wheel-tae9lf3p/compare-reads_8034d753e17d4257a40ab3bc093500a6/.eggs/pysam-0.23.3-py3.13-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2025-09-08T16:42:00,634       9 | KSEQ_INIT(BGZF *, bgzf_read)
2025-09-08T16:42:00,634         | ^~~~~~~~~
2025-09-08T16:42:03,638   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/src/compare_reads/_compare_reads.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/compare_reads/_compare_reads.cpython-313-arm-linux-gnueabihf.so
2025-09-08T16:42:03,832   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T16:42:03,832   !!

2025-09-08T16:42:03,832           ********************************************************************************
2025-09-08T16:42:03,833           Please avoid running ``setup.py`` directly.
2025-09-08T16:42:03,833           Instead, use pypa/build, pypa/installer or other
2025-09-08T16:42:03,833           standards-based tools.

2025-09-08T16:42:03,833           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T16:42:03,833           or your builds will no longer be supported.

2025-09-08T16:42:03,833           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T16:42:03,833           ********************************************************************************

2025-09-08T16:42:03,834   !!
2025-09-08T16:42:03,834     self.initialize_options()
2025-09-08T16:42:03,910   installing to build/bdist.linux-armv7l/wheel
2025-09-08T16:42:03,910   running install
2025-09-08T16:42:03,932   running install_lib
2025-09-08T16:42:04,008   creating build/bdist.linux-armv7l/wheel
2025-09-08T16:42:04,008   creating build/bdist.linux-armv7l/wheel/compare_reads
2025-09-08T16:42:04,009   copying build/lib.linux-armv7l-cpython-313/compare_reads/_compare_reads.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:42:04,010   copying build/lib.linux-armv7l-cpython-313/compare_reads/strnum_cmp.c -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:42:04,010   copying build/lib.linux-armv7l-cpython-313/compare_reads/_compare_reads.pyx -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:42:04,011   copying build/lib.linux-armv7l-cpython-313/compare_reads/_compare_reads.pxd -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:42:04,011   copying build/lib.linux-armv7l-cpython-313/compare_reads/_compare_reads.c -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:42:04,012   copying build/lib.linux-armv7l-cpython-313/compare_reads/__init__.py -> build/bdist.linux-armv7l/wheel/./compare_reads
2025-09-08T16:42:04,013   running install_egg_info
2025-09-08T16:42:04,091   Copying src/compare_reads.egg-info to build/bdist.linux-armv7l/wheel/./compare_reads-0.0.1-py3.13.egg-info
2025-09-08T16:42:04,093   running install_scripts
2025-09-08T16:42:04,149   creating build/bdist.linux-armv7l/wheel/compare_reads-0.0.1.dist-info/WHEEL
2025-09-08T16:42:04,150   creating '/tmp/pip-wheel-h5_9oner/compare_reads-0.0.1-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-08T16:42:04,151   adding 'compare_reads/__init__.py'
2025-09-08T16:42:04,168   adding 'compare_reads/_compare_reads.c'
2025-09-08T16:42:04,212   adding 'compare_reads/_compare_reads.cpython-313-arm-linux-gnueabihf.so'
2025-09-08T16:42:04,214   adding 'compare_reads/_compare_reads.pxd'
2025-09-08T16:42:04,215   adding 'compare_reads/_compare_reads.pyx'
2025-09-08T16:42:04,216   adding 'compare_reads/strnum_cmp.c'
2025-09-08T16:42:04,217   adding 'compare_reads-0.0.1.dist-info/licenses/AUTHORS.rst'
2025-09-08T16:42:04,217   adding 'compare_reads-0.0.1.dist-info/licenses/LICENSE'
2025-09-08T16:42:04,218   adding 'compare_reads-0.0.1.dist-info/METADATA'
2025-09-08T16:42:04,218   adding 'compare_reads-0.0.1.dist-info/WHEEL'
2025-09-08T16:42:04,219   adding 'compare_reads-0.0.1.dist-info/top_level.txt'
2025-09-08T16:42:04,219   adding 'compare_reads-0.0.1.dist-info/RECORD'
2025-09-08T16:42:04,220   removing build/bdist.linux-armv7l/wheel
2025-09-08T16:42:04,648   Building wheel for compare-reads (setup.py): finished with status 'done'
2025-09-08T16:42:04,651   Created wheel for compare-reads: filename=compare_reads-0.0.1-cp313-cp313-linux_armv7l.whl size=130476 sha256=9752e21cdc95320d1cbffb8c64c95d2369139d74ef77d64968a8f22f5b2da5e8
2025-09-08T16:42:04,652   Stored in directory: /tmp/pip-ephem-wheel-cache-3lbyh2me/wheels/8a/8d/80/0d2e685d07a01356fe0ca73dc3d73915e4080dd743257a3b17
2025-09-08T16:42:04,660 Successfully built compare-reads
2025-09-08T16:42:04,662 Removed build tracker: '/tmp/pip-build-tracker-xhe09cst'