2025-09-08T17:12:00,412 Created temporary directory: /tmp/pip-build-tracker-ua4o_zku
2025-09-08T17:12:00,412 Initialized build tracking at /tmp/pip-build-tracker-ua4o_zku
2025-09-08T17:12:00,413 Created build tracker: /tmp/pip-build-tracker-ua4o_zku
2025-09-08T17:12:00,413 Entered build tracker: /tmp/pip-build-tracker-ua4o_zku
2025-09-08T17:12:00,413 Created temporary directory: /tmp/pip-wheel-l7_qizkj
2025-09-08T17:12:00,416 Created temporary directory: /tmp/pip-ephem-wheel-cache-3m7xrccj
2025-09-08T17:12:00,473 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T17:12:00,475 2 location(s) to search for versions of transvar:
2025-09-08T17:12:00,475 * https://pypi.org/simple/transvar/
2025-09-08T17:12:00,475 * https://www.piwheels.org/simple/transvar/
2025-09-08T17:12:00,475 Fetching project page and analyzing links: https://pypi.org/simple/transvar/
2025-09-08T17:12:00,476 Getting page https://pypi.org/simple/transvar/
2025-09-08T17:12:00,477 Found index url https://pypi.org/simple/
2025-09-08T17:12:00,548 Fetched page https://pypi.org/simple/transvar/ as application/vnd.pypi.simple.v1+json
2025-09-08T17:12:00,552   Found link https://files.pythonhosted.org/packages/08/6c/f47d5c1b30408e08f19c5fbe42e03f57a234057fe1dd4c82a2e908a38a73/TransVar-2.2.3.20160407.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.3.20160407
2025-09-08T17:12:00,552   Found link https://files.pythonhosted.org/packages/2c/44/b95ffb8f13d8bb611c15adacdcf61cf24e51685cd193b2a1769270183e14/TransVar-2.2.4.20160407.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.4.20160407
2025-09-08T17:12:00,553   Found link https://files.pythonhosted.org/packages/d2/5c/083e2ec87dbae164c1ba791cd88f7a14473859980e3f5775a88cb9f18c8d/TransVar-2.2.5.20160408.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.5.20160408
2025-09-08T17:12:00,553   Found link https://files.pythonhosted.org/packages/2b/7b/f71bd04791a21d7c6c51ed2801b53cfde506c57fcaaa90eff0c0b96cc4bc/TransVar-2.2.6.20160427.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.6.20160427
2025-09-08T17:12:00,553   Found link https://files.pythonhosted.org/packages/bb/a1/1dd7275f4a930448d1e66a40cc720e505b7cce8dae450dfbc0b73b6fe391/TransVar-2.2.7.20160427.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.7.20160427
2025-09-08T17:12:00,553   Found link https://files.pythonhosted.org/packages/d3/df/680fb4f9e32967ef2beb3fdc548eea6f6496eeb25f673f5c4e4c5ed22ef8/TransVar-2.2.8.20160502.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.8.20160502
2025-09-08T17:12:00,554   Found link https://files.pythonhosted.org/packages/87/4c/00f096288e5b2636dc7cf2a49ea6465649734cfddde6698ee315d2fc5b4a/TransVar-2.2.9.20160503.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.9.20160503
2025-09-08T17:12:00,554   Found link https://files.pythonhosted.org/packages/ee/0f/b340f49b44ef2d0fe305c4e4f44b393a44af7d64e5d6ccc9dc9464887e32/TransVar-2.2.10.20160512.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.10.20160512
2025-09-08T17:12:00,554   Found link https://files.pythonhosted.org/packages/57/b1/34e879cdcc60d291102d0634efbc6bcc588f8af5052009c8943a8755c968/TransVar-2.2.11.20160531.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.11.20160531
2025-09-08T17:12:00,554   Found link https://files.pythonhosted.org/packages/0e/e2/86c1e324c0af3086c36628c7b94caf19547b18560ea667d28825f8f57ae3/TransVar-2.2.12.20160723.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.12.20160723
2025-09-08T17:12:00,554   Found link https://files.pythonhosted.org/packages/d1/fe/a13f91f948c3e89d08e0a8acb2eadf0759cbc816a57456196736218b46ce/TransVar-2.2.13.20160723.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.13.20160723
2025-09-08T17:12:00,555   Found link https://files.pythonhosted.org/packages/fb/f4/02b249106131830b0bb00c0b10b15a10ded8f03077da8bccd72d2c8a7366/TransVar-2.2.14.20161002.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.14.20161002
2025-09-08T17:12:00,555   Found link https://files.pythonhosted.org/packages/9b/02/2d7ef5f0bbf746e2f4781ccb3d24822af377b188b9dbbee30cec829fa487/TransVar-2.2.15.20161002.tar.gz (from https://pypi.org/simple/transvar/), version: 2.2.15.20161002
2025-09-08T17:12:00,555   Found link https://files.pythonhosted.org/packages/19/d8/a0c36f428d8acca26cc8bce1f8aa79a7597db4f05c79c8d2943fe9b153fc/TransVar-2.3.0.20161007.tar.gz (from https://pypi.org/simple/transvar/), version: 2.3.0.20161007
2025-09-08T17:12:00,555   Found link https://files.pythonhosted.org/packages/5a/06/25e17459a69dfe3545ec60e9bcb25352c8b7507b69dcd7d91231b347362e/TransVar-2.3.1.20161012.tar.gz (from https://pypi.org/simple/transvar/), version: 2.3.1.20161012
2025-09-08T17:12:00,555   Found link https://files.pythonhosted.org/packages/ec/a4/7f39c4bdd55034793debeb843b84bb3a4a1772af2ad4853e233aa3bfae7b/TransVar-2.3.2.20161106.tar.gz (from https://pypi.org/simple/transvar/), version: 2.3.2.20161106
2025-09-08T17:12:00,556   Found link https://files.pythonhosted.org/packages/f0/28/2bd84a4700ef07a998e80e9ad09f7180f4758f68077d854a8541b6b31143/TransVar-2.3.3.20161203.tar.gz (from https://pypi.org/simple/transvar/), version: 2.3.3.20161203
2025-09-08T17:12:00,556   Found link https://files.pythonhosted.org/packages/bc/b3/a0c9a2edf84c397fbf5a6624ddec2f9f961c2b79e070589c361781257111/TransVar-2.3.4.20161215.tar.gz (from https://pypi.org/simple/transvar/), version: 2.3.4.20161215
2025-09-08T17:12:00,556   Found link https://files.pythonhosted.org/packages/5c/34/222a51489e07dcad5f29f78cee8e0f8e74b1b8b21cd7bb6d12dd2573129d/TransVar-2.4.0.20180701.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.0.20180701
2025-09-08T17:12:00,556   Found link https://files.pythonhosted.org/packages/06/41/dfa097486b76d3d8351d5fe4599e0b69ad71cfda1d739d8cd98faa4efaf6/TransVar-2.4.1.20180815.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.1.20180815
2025-09-08T17:12:00,556   Found link https://files.pythonhosted.org/packages/4b/a2/9a02c155404499b4baac5d5bc7fa994ca77101238e544967a6a612bebefb/TransVar-2.4.2.20181231.linux-x86_64.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.2.20181231.linux-x86_64
2025-09-08T17:12:00,557   Found link https://files.pythonhosted.org/packages/e3/2c/24dd2011bdbbae662607eaf3bb98dc4671d2ca97863adfbe1a0979e44b7c/TransVar-2.4.3.20181231.macosx-10.7-x86_64.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.3.20181231.macosx-10.7-x86_64
2025-09-08T17:12:00,557   Found link https://files.pythonhosted.org/packages/a8/00/d435ffe1c3ef6122be1c0b159b09844ea00e26c283a200ffeabd86b1b9e5/TransVar-2.4.5.20190121.linux-x86_64.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.5.20190121.linux-x86_64
2025-09-08T17:12:00,557   Found link https://files.pythonhosted.org/packages/e5/bb/05b86cb6a1785fefad9c6fa49647c2fca8a5af25622285bc9a7858d313fe/TransVar-2.4.6.20190121.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.6.20190121
2025-09-08T17:12:00,557   Found link https://files.pythonhosted.org/packages/b4/2a/981908e0b8034e128753a08697d1693342e35c262ac9801384db7c3f67dc/TransVar-2.4.7.20190122.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.7.20190122
2025-09-08T17:12:00,557   Found link https://files.pythonhosted.org/packages/59/c0/9367847eb7367bec582f0878a199f102667c7d16bd2a8fc74d1e750d2b28/TransVar-2.4.8.20190122.tar.gz (from https://pypi.org/simple/transvar/), version: 2.4.8.20190122
2025-09-08T17:12:00,558   Found link https://files.pythonhosted.org/packages/b4/07/5354a402238297ebc687a5a64df3acced1e8c7a550cb8366f0cc597728bd/TransVar-2.5.0.20190314.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.0.20190314
2025-09-08T17:12:00,558   Found link https://files.pythonhosted.org/packages/59/d6/2905c05c60e0d50545825a2cc6affafddb5d22ceea996c7d89c9cbad82de/TransVar-2.5.1.20190326.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.1.20190326
2025-09-08T17:12:00,558   Found link https://files.pythonhosted.org/packages/aa/ee/db5408c9dd1f8fda18cc47d4a59f8b6452a0b423036c11fb8094d3b8c4b1/TransVar-2.5.2.20190401.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.2.20190401
2025-09-08T17:12:00,558   Found link https://files.pythonhosted.org/packages/0f/d1/23d5e5144a7827d866608e83f2a50708a81fc0adf035399fbe2e3f27f269/TransVar-2.5.3.20190424.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.3.20190424
2025-09-08T17:12:00,558   Found link https://files.pythonhosted.org/packages/6b/0d/54c1aedb8dc212405906f0de57c59dc3b4886648f0778453ffc419fcb3ae/TransVar-2.5.4.20190424.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.4.20190424
2025-09-08T17:12:00,559   Found link https://files.pythonhosted.org/packages/00/53/c95a1a2ceb64819124d248268e47bb49f3083e7b7303579dc82fe7e8b63f/TransVar-2.5.5.20190430.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.5.20190430
2025-09-08T17:12:00,559   Found link https://files.pythonhosted.org/packages/98/75/2a931b2024578b9e983478b8e5dc9c8a97d17abd853d61764eebc8899c6a/TransVar-2.5.6.20190605.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.6.20190605
2025-09-08T17:12:00,559   Found link https://files.pythonhosted.org/packages/69/3b/ace0d9d8535fecba01f3ad0889616325acac49a14f48e88ad4f0fcae867b/TransVar-2.5.7.20190617.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.7.20190617
2025-09-08T17:12:00,559   Found link https://files.pythonhosted.org/packages/90/2a/c79f2efcef9d5d4ef7be668b76359baa7342ace17e5f864f5e3800c6b288/TransVar-2.5.8.20190813.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.8.20190813
2025-09-08T17:12:00,559   Found link https://files.pythonhosted.org/packages/99/89/e759694b24f6a9d74049e8dd66bd9194e54e4bb97effbca4c69dff9f9046/TransVar-2.5.9.20190830.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.9.20190830
2025-09-08T17:12:00,560   Found link https://files.pythonhosted.org/packages/b5/8d/7016d6a3488c2cfdfa5669c1f11ed6970d32eb2e3bbe9efad980d0a0b7e8/TransVar-2.5.10.20211024.tar.gz (from https://pypi.org/simple/transvar/), version: 2.5.10.20211024
2025-09-08T17:12:00,560 Fetching project page and analyzing links: https://www.piwheels.org/simple/transvar/
2025-09-08T17:12:00,560 Getting page https://www.piwheels.org/simple/transvar/
2025-09-08T17:12:00,561 Found index url https://www.piwheels.org/simple/
2025-09-08T17:12:00,665 Fetched page https://www.piwheels.org/simple/transvar/ as text/html
2025-09-08T17:12:00,666 Skipping link: not a file: https://www.piwheels.org/simple/transvar/
2025-09-08T17:12:00,666 Skipping link: not a file: https://pypi.org/simple/transvar/
2025-09-08T17:12:00,694 Given no hashes to check 1 links for project 'transvar': discarding no candidates
2025-09-08T17:12:00,696 Collecting transvar==2.5.2.20190401
2025-09-08T17:12:00,697   Created temporary directory: /tmp/pip-unpack-28rv9_c1
2025-09-08T17:12:00,833   Downloading TransVar-2.5.2.20190401.tar.gz (143 kB)
2025-09-08T17:12:00,913   Added transvar==2.5.2.20190401 from https://files.pythonhosted.org/packages/aa/ee/db5408c9dd1f8fda18cc47d4a59f8b6452a0b423036c11fb8094d3b8c4b1/TransVar-2.5.2.20190401.tar.gz to build tracker '/tmp/pip-build-tracker-ua4o_zku'
2025-09-08T17:12:00,914   Running setup.py (path:/tmp/pip-wheel-l7_qizkj/transvar_13aab25e1a27404c9acd692e8bf2d010/setup.py) egg_info for package transvar
2025-09-08T17:12:00,915   Created temporary directory: /tmp/pip-pip-egg-info-7gnr4kw4
2025-09-08T17:12:00,915   Preparing metadata (setup.py): started
2025-09-08T17:12:00,916   Running command python setup.py egg_info
2025-09-08T17:12:01,518   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T17:12:01,518   !!

2025-09-08T17:12:01,518           ********************************************************************************
2025-09-08T17:12:01,519           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T17:12:01,519           versions. Please use the underscore name 'description_file' instead.

2025-09-08T17:12:01,519           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T17:12:01,519           or your builds will no longer be supported.

2025-09-08T17:12:01,519           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T17:12:01,519           ********************************************************************************

2025-09-08T17:12:01,519   !!
2025-09-08T17:12:01,520     opt = self._enforce_underscore(opt, section)
2025-09-08T17:12:01,970   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T17:12:01,970   !!

2025-09-08T17:12:01,970           ********************************************************************************
2025-09-08T17:12:01,970           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T17:12:01,970           versions. Please use the underscore name 'description_file' instead.
2025-09-08T17:12:01,970           (Affected: TransVar).

2025-09-08T17:12:01,970           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T17:12:01,971           or your builds will no longer be supported.

2025-09-08T17:12:01,971           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T17:12:01,971           ********************************************************************************

2025-09-08T17:12:01,971   !!
2025-09-08T17:12:01,971     opt = self._enforce_underscore(opt, section)
2025-09-08T17:12:01,971   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T17:12:01,971   !!

2025-09-08T17:12:01,971           ********************************************************************************
2025-09-08T17:12:01,972           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T17:12:01,972           License :: OSI Approved :: MIT License

2025-09-08T17:12:01,972           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T17:12:01,972           ********************************************************************************

2025-09-08T17:12:01,972   !!
2025-09-08T17:12:01,972     self._finalize_license_expression()
2025-09-08T17:12:02,043   running egg_info
2025-09-08T17:12:02,115   creating /tmp/pip-pip-egg-info-7gnr4kw4/TransVar.egg-info
2025-09-08T17:12:02,115   writing /tmp/pip-pip-egg-info-7gnr4kw4/TransVar.egg-info/PKG-INFO
2025-09-08T17:12:02,116   writing dependency_links to /tmp/pip-pip-egg-info-7gnr4kw4/TransVar.egg-info/dependency_links.txt
2025-09-08T17:12:02,117   writing requirements to /tmp/pip-pip-egg-info-7gnr4kw4/TransVar.egg-info/requires.txt
2025-09-08T17:12:02,117   writing top-level names to /tmp/pip-pip-egg-info-7gnr4kw4/TransVar.egg-info/top_level.txt
2025-09-08T17:12:02,118   writing manifest file '/tmp/pip-pip-egg-info-7gnr4kw4/TransVar.egg-info/SOURCES.txt'
2025-09-08T17:12:02,416   reading manifest file '/tmp/pip-pip-egg-info-7gnr4kw4/TransVar.egg-info/SOURCES.txt'
2025-09-08T17:12:02,416   reading manifest template 'MANIFEST.in'
2025-09-08T17:12:02,421   warning: no files found matching 'Makefile' under directory 'external'
2025-09-08T17:12:02,422   warning: no files found matching '*.mk' under directory 'external'
2025-09-08T17:12:02,423   warning: no files found matching 'configure' under directory 'external'
2025-09-08T17:12:02,424   warning: no files found matching 'config.mk.in' under directory 'external'
2025-09-08T17:12:02,428   writing manifest file '/tmp/pip-pip-egg-info-7gnr4kw4/TransVar.egg-info/SOURCES.txt'
2025-09-08T17:12:02,543   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T17:12:02,548   Source in /tmp/pip-wheel-l7_qizkj/transvar_13aab25e1a27404c9acd692e8bf2d010 has version 2.5.2.20190401, which satisfies requirement transvar==2.5.2.20190401 from https://files.pythonhosted.org/packages/aa/ee/db5408c9dd1f8fda18cc47d4a59f8b6452a0b423036c11fb8094d3b8c4b1/TransVar-2.5.2.20190401.tar.gz
2025-09-08T17:12:02,548   Removed transvar==2.5.2.20190401 from https://files.pythonhosted.org/packages/aa/ee/db5408c9dd1f8fda18cc47d4a59f8b6452a0b423036c11fb8094d3b8c4b1/TransVar-2.5.2.20190401.tar.gz from build tracker '/tmp/pip-build-tracker-ua4o_zku'
2025-09-08T17:12:02,551 Created temporary directory: /tmp/pip-unpack-_ygt82ss
2025-09-08T17:12:02,552 Created temporary directory: /tmp/pip-unpack-zfzfwxpg
2025-09-08T17:12:02,552 Building wheels for collected packages: transvar
2025-09-08T17:12:02,553   Created temporary directory: /tmp/pip-wheel-g7o9fc5s
2025-09-08T17:12:02,553   DEPRECATION: Building 'transvar' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'transvar'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T17:12:02,554   Building wheel for transvar (setup.py): started
2025-09-08T17:12:02,555   Destination directory: /tmp/pip-wheel-g7o9fc5s
2025-09-08T17:12:02,555   Running command python setup.py bdist_wheel
2025-09-08T17:12:03,197   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T17:12:03,197   !!

2025-09-08T17:12:03,197           ********************************************************************************
2025-09-08T17:12:03,197           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T17:12:03,197           versions. Please use the underscore name 'description_file' instead.

2025-09-08T17:12:03,197           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T17:12:03,197           or your builds will no longer be supported.

2025-09-08T17:12:03,198           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T17:12:03,198           ********************************************************************************

2025-09-08T17:12:03,198   !!
2025-09-08T17:12:03,198     opt = self._enforce_underscore(opt, section)
2025-09-08T17:12:03,662   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T17:12:03,662   !!

2025-09-08T17:12:03,663           ********************************************************************************
2025-09-08T17:12:03,663           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T17:12:03,663           versions. Please use the underscore name 'description_file' instead.
2025-09-08T17:12:03,663           (Affected: TransVar).

2025-09-08T17:12:03,663           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T17:12:03,663           or your builds will no longer be supported.

2025-09-08T17:12:03,663           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T17:12:03,663           ********************************************************************************

2025-09-08T17:12:03,664   !!
2025-09-08T17:12:03,664     opt = self._enforce_underscore(opt, section)
2025-09-08T17:12:03,664   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T17:12:03,664   !!

2025-09-08T17:12:03,664           ********************************************************************************
2025-09-08T17:12:03,664           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T17:12:03,664           License :: OSI Approved :: MIT License

2025-09-08T17:12:03,665           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T17:12:03,665           ********************************************************************************

2025-09-08T17:12:03,665   !!
2025-09-08T17:12:03,665     self._finalize_license_expression()
2025-09-08T17:12:03,665   running bdist_wheel
2025-09-08T17:12:03,959   running build
2025-09-08T17:12:03,959   running build_py
2025-09-08T17:12:04,036   creating build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,037   copying transvar/version.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,038   copying transvar/utils.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,038   copying transvar/transcripts.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,039   copying transvar/snv.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,039   copying transvar/region.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,040   copying transvar/record.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,041   copying transvar/proteinseqs.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,041   copying transvar/parser.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,042   copying transvar/mutation.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,042   copying transvar/mnv.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,043   copying transvar/localdb.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,043   copying transvar/insertion.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,044   copying transvar/frameshift.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,045   copying transvar/faidx.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,045   copying transvar/err.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,046   copying transvar/describe.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,046   copying transvar/deletion.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,047   copying transvar/config.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,047   copying transvar/codonsearch.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,048   copying transvar/argparse.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,049   copying transvar/annodb.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,049   copying transvar/anno.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,050   copying transvar/__init__.py -> build/lib.linux-armv7l-cpython-313/transvar
2025-09-08T17:12:04,050   creating build/lib.linux-armv7l-cpython-313/transvar/ssw
2025-09-08T17:12:04,051   copying transvar/ssw/__init__.py -> build/lib.linux-armv7l-cpython-313/transvar/ssw
2025-09-08T17:12:04,053   running build_ext
2025-09-08T17:12:04,385   building 'transvar.tabix' extension
2025-09-08T17:12:04,386   creating build/temp.linux-armv7l-cpython-313/external/pytabix
2025-09-08T17:12:04,387   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/bgzf.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/bgzf.o -w
2025-09-08T17:12:05,007   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/bgzip.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/bgzip.o -w
2025-09-08T17:12:05,405   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/index.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/index.o -w
2025-09-08T17:12:08,290   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/knetfile.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/knetfile.o -w
2025-09-08T17:12:09,061   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/kstring.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/kstring.o -w
2025-09-08T17:12:09,550   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Iexternal/pytabix -I/usr/include/python3.13 -c external/pytabix/tabixmodule.c -o build/temp.linux-armv7l-cpython-313/external/pytabix/tabixmodule.o -w
2025-09-08T17:12:10,152   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/external/pytabix/bgzf.o build/temp.linux-armv7l-cpython-313/external/pytabix/bgzip.o build/temp.linux-armv7l-cpython-313/external/pytabix/index.o build/temp.linux-armv7l-cpython-313/external/pytabix/knetfile.o build/temp.linux-armv7l-cpython-313/external/pytabix/kstring.o build/temp.linux-armv7l-cpython-313/external/pytabix/tabixmodule.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-313/transvar/tabix.cpython-313-arm-linux-gnueabihf.so
2025-09-08T17:12:10,278   building 'transvar.ssw._sswlib' extension
2025-09-08T17:12:10,278   creating build/temp.linux-armv7l-cpython-313/external/ssw
2025-09-08T17:12:10,279   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iexternal/ssw -I/usr/include/python3.13 -c external/ssw/encode.c -o build/temp.linux-armv7l-cpython-313/external/ssw/encode.o -W -Wall -O2 -finline-functions -fPIC -shared -Wl,-soname,sswlib
2025-09-08T17:12:10,416   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iexternal/ssw -I/usr/include/python3.13 -c external/ssw/ssw.c -o build/temp.linux-armv7l-cpython-313/external/ssw/ssw.o -W -Wall -O2 -finline-functions -fPIC -shared -Wl,-soname,sswlib
2025-09-08T17:12:10,460   external/ssw/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory
2025-09-08T17:12:10,461      38 | #include <emmintrin.h>
2025-09-08T17:12:10,461         |          ^~~~~~~~~~~~~
2025-09-08T17:12:10,461   compilation terminated.
2025-09-08T17:12:10,463   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2025-09-08T17:12:10,611   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T17:12:10,623   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T17:12:10,623   exec(compile('"'"''"'"''"'"'
2025-09-08T17:12:10,623   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T17:12:10,623   #
2025-09-08T17:12:10,623   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T17:12:10,623   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T17:12:10,623   # - It provides a clear error message when setuptools is not installed.
2025-09-08T17:12:10,623   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T17:12:10,623   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T17:12:10,623   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T17:12:10,623   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T17:12:10,623   import os, sys, tokenize, traceback
2025-09-08T17:12:10,623   
2025-09-08T17:12:10,623   try:
2025-09-08T17:12:10,623       import setuptools
2025-09-08T17:12:10,623   except ImportError:
2025-09-08T17:12:10,623       print(
2025-09-08T17:12:10,623           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T17:12:10,623           "the build environment with exception:",
2025-09-08T17:12:10,623           file=sys.stderr,
2025-09-08T17:12:10,623       )
2025-09-08T17:12:10,623       traceback.print_exc()
2025-09-08T17:12:10,623       sys.exit(1)
2025-09-08T17:12:10,623   
2025-09-08T17:12:10,623   __file__ = %r
2025-09-08T17:12:10,623   sys.argv[0] = __file__
2025-09-08T17:12:10,623   
2025-09-08T17:12:10,623   if os.path.exists(__file__):
2025-09-08T17:12:10,623       filename = __file__
2025-09-08T17:12:10,623       with tokenize.open(__file__) as f:
2025-09-08T17:12:10,623           setup_py_code = f.read()
2025-09-08T17:12:10,623   else:
2025-09-08T17:12:10,623       filename = "<auto-generated setuptools caller>"
2025-09-08T17:12:10,623       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T17:12:10,623   
2025-09-08T17:12:10,623   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T17:12:10,623   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-l7_qizkj/transvar_13aab25e1a27404c9acd692e8bf2d010/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-g7o9fc5s[/]
2025-09-08T17:12:10,623   [bold magenta]cwd[/]: /tmp/pip-wheel-l7_qizkj/transvar_13aab25e1a27404c9acd692e8bf2d010/
2025-09-08T17:12:10,623   Building wheel for transvar (setup.py): finished with status 'error'
2025-09-08T17:12:10,624   ERROR: Failed building wheel for transvar
2025-09-08T17:12:10,624   Running setup.py clean for transvar
2025-09-08T17:12:10,625   Running command python setup.py clean
2025-09-08T17:12:11,265   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T17:12:11,265   !!

2025-09-08T17:12:11,265           ********************************************************************************
2025-09-08T17:12:11,266           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T17:12:11,266           versions. Please use the underscore name 'description_file' instead.

2025-09-08T17:12:11,266           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T17:12:11,266           or your builds will no longer be supported.

2025-09-08T17:12:11,266           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T17:12:11,266           ********************************************************************************

2025-09-08T17:12:11,266   !!
2025-09-08T17:12:11,266     opt = self._enforce_underscore(opt, section)
2025-09-08T17:12:11,726   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-09-08T17:12:11,726   !!

2025-09-08T17:12:11,726           ********************************************************************************
2025-09-08T17:12:11,726           Usage of dash-separated 'description-file' will not be supported in future
2025-09-08T17:12:11,726           versions. Please use the underscore name 'description_file' instead.
2025-09-08T17:12:11,726           (Affected: TransVar).

2025-09-08T17:12:11,727           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-09-08T17:12:11,727           or your builds will no longer be supported.

2025-09-08T17:12:11,727           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-09-08T17:12:11,727           ********************************************************************************

2025-09-08T17:12:11,727   !!
2025-09-08T17:12:11,727     opt = self._enforce_underscore(opt, section)
2025-09-08T17:12:11,727   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T17:12:11,728   !!

2025-09-08T17:12:11,728           ********************************************************************************
2025-09-08T17:12:11,728           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T17:12:11,728           License :: OSI Approved :: MIT License

2025-09-08T17:12:11,728           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T17:12:11,728           ********************************************************************************

2025-09-08T17:12:11,729   !!
2025-09-08T17:12:11,729     self._finalize_license_expression()
2025-09-08T17:12:11,802   running clean
2025-09-08T17:12:11,876   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T17:12:11,877   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T17:12:11,879   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T17:12:11,879   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T17:12:11,879   removing 'build'
2025-09-08T17:12:11,992 Failed to build transvar
2025-09-08T17:12:11,993 ERROR: Failed to build one or more wheels
2025-09-08T17:12:11,993 Exception information:
2025-09-08T17:12:11,993 Traceback (most recent call last):
2025-09-08T17:12:11,993   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T17:12:11,993     status = _inner_run()
2025-09-08T17:12:11,993   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T17:12:11,993     return self.run(options, args)
2025-09-08T17:12:11,993            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T17:12:11,993   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T17:12:11,993     return func(self, options, args)
2025-09-08T17:12:11,993   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T17:12:11,993     raise CommandError("Failed to build one or more wheels")
2025-09-08T17:12:11,993 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T17:12:11,998 Removed build tracker: '/tmp/pip-build-tracker-ua4o_zku'