2025-09-08T17:21:50,373 Created temporary directory: /tmp/pip-build-tracker-ak0qrczc 2025-09-08T17:21:50,374 Initialized build tracking at /tmp/pip-build-tracker-ak0qrczc 2025-09-08T17:21:50,374 Created build tracker: /tmp/pip-build-tracker-ak0qrczc 2025-09-08T17:21:50,374 Entered build tracker: /tmp/pip-build-tracker-ak0qrczc 2025-09-08T17:21:50,374 Created temporary directory: /tmp/pip-wheel-1ktx4pxo 2025-09-08T17:21:50,377 Created temporary directory: /tmp/pip-ephem-wheel-cache-3qxjzpde 2025-09-08T17:21:50,438 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T17:21:50,440 2 location(s) to search for versions of pyxmolpp2: 2025-09-08T17:21:50,440 * https://pypi.org/simple/pyxmolpp2/ 2025-09-08T17:21:50,440 * https://www.piwheels.org/simple/pyxmolpp2/ 2025-09-08T17:21:50,440 Fetching project page and analyzing links: https://pypi.org/simple/pyxmolpp2/ 2025-09-08T17:21:50,441 Getting page https://pypi.org/simple/pyxmolpp2/ 2025-09-08T17:21:50,442 Found index url https://pypi.org/simple/ 2025-09-08T17:21:50,512 Fetched page https://pypi.org/simple/pyxmolpp2/ as application/vnd.pypi.simple.v1+json 2025-09-08T17:21:50,517 Found link https://files.pythonhosted.org/packages/41/1d/65a5e96d7d0c86d687b4e7e8d10ac232f573e14b9d1884111ebd1a477502/pyxmolpp2-0.0.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.0.1 2025-09-08T17:21:50,518 Found link https://files.pythonhosted.org/packages/e2/27/027a784be451eb7fe624a90523f4f289d6814db90adddbf09318ae136e4e/pyxmolpp2-0.1.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.1.0 2025-09-08T17:21:50,518 Found link https://files.pythonhosted.org/packages/49/94/6e7b42f4898aff76225a6e7ac3148dd53fd871a8cf1fa87876b5e5661fe4/pyxmolpp2-0.1.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.1.1 2025-09-08T17:21:50,518 Found link https://files.pythonhosted.org/packages/d9/89/7e348a861f1cbf78307f4617881c0996e74b38ab6f1d5d927b5be3c8b934/pyxmolpp2-0.2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.2.0 2025-09-08T17:21:50,518 Found link https://files.pythonhosted.org/packages/8c/89/16cf719b01cb66c3f62f5540abeca7bc26a1dbe7cd83c048d94dd4c60c37/pyxmolpp2-0.3.0.dev0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0.dev0 2025-09-08T17:21:50,519 Found link https://files.pythonhosted.org/packages/32/94/5d324e82f3785ea81d6913a781e674f95995cbaa54ec32171d0da3056f1c/pyxmolpp2-0.3.0.dev1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0.dev1 2025-09-08T17:21:50,519 Found link https://files.pythonhosted.org/packages/66/fa/f3e3cd5cdf297b37e10a8131075358a3e663831b965ce71900122e765d06/pyxmolpp2-0.3.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.3.0 2025-09-08T17:21:50,519 Found link https://files.pythonhosted.org/packages/db/70/90e7913b6629f135ab3f8dcfae9c428aaf311e981db0caada01f51c8751a/pyxmolpp2-0.4.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.4.0 2025-09-08T17:21:50,519 Found link https://files.pythonhosted.org/packages/ea/1d/22d1b9eff0ed0b73bb8ba213c459a8818103847199add714dec7c0862c9b/pyxmolpp2-0.6.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.6.0 2025-09-08T17:21:50,520 Found link https://files.pythonhosted.org/packages/fb/26/6420cdf2349c7bbdf98f58cdb260e1ed0dee55d290cdab6b79d99b457ef9/pyxmolpp2-0.6.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.6.1 2025-09-08T17:21:50,520 Found link https://files.pythonhosted.org/packages/27/33/21c7acd6275667d94465436e150f6f3724935c4fd171dd51db516d5a3495/pyxmolpp2-0.7.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.7.0 2025-09-08T17:21:50,520 Found link https://files.pythonhosted.org/packages/7b/36/aac554b63b1e7fd94ead8a17af4a3d968b9ebab94c905369d5ec20a140f0/pyxmolpp2-0.7.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.7.1 2025-09-08T17:21:50,520 Found link https://files.pythonhosted.org/packages/e0/ad/0e16148eed09fc4190458935fbbf948aaa2794d1620842f0e3fc3aaa7f14/pyxmolpp2-0.8.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.0 2025-09-08T17:21:50,520 Found link https://files.pythonhosted.org/packages/1a/97/f5a5894f690501edb1f32ce0373f364abd70a55293b4222a2e8fd2b62b08/pyxmolpp2-0.8.1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.1 2025-09-08T17:21:50,521 Found link https://files.pythonhosted.org/packages/c7/ed/0784103f8a79a3c24b71e560ef517c623b029a04c2c4f67820a70bc68f27/pyxmolpp2-0.8.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.8.2 2025-09-08T17:21:50,521 Found link https://files.pythonhosted.org/packages/85/17/8ab6537831012139ee04eaba92e3eb2b1724a81c3ed27f191b3d28f6789c/pyxmolpp2-0.9.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.9.0 2025-09-08T17:21:50,521 Found link https://files.pythonhosted.org/packages/55/4b/d6906a0c33681b8f03fa9497cd40a74b069c7393351927dd772503d0ecfb/pyxmolpp2-0.9.0.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.9.0.post1 2025-09-08T17:21:50,521 Found link https://files.pythonhosted.org/packages/b7/9b/fb4bb3e07ea292b34f258da0a9f08ae96f18a990477d2f7714319dc11bb1/pyxmolpp2-0.10.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.0 2025-09-08T17:21:50,522 Found link https://files.pythonhosted.org/packages/50/38/47ab868258a00a5d017424f8d5456a3718a475f1a854bdc999df7f116075/pyxmolpp2-0.10.1.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.1.post1 2025-09-08T17:21:50,522 Found link https://files.pythonhosted.org/packages/26/fc/9e70d088b5e6fd688e01c0f13ac748d813f813b8a358bacb8eb66d1971fb/pyxmolpp2-0.10.1.post2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.1.post2 2025-09-08T17:21:50,522 Found link https://files.pythonhosted.org/packages/64/1e/ab2524f122b9966e8c51e2228fdde7f00d7475eec722a27b80aa3e26bfad/pyxmolpp2-0.10.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.2 2025-09-08T17:21:50,522 Found link https://files.pythonhosted.org/packages/ac/ac/417e76e0eb127e941fb6599915dd543a50e115925180fe97c83a6947ef5d/pyxmolpp2-0.10.3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.3 2025-09-08T17:21:50,523 Found link https://files.pythonhosted.org/packages/60/57/46db548b97f72c8ce5fbdc48392cf8870cff33afb5e95d24d78dec9c23c4/pyxmolpp2-0.10.4.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 0.10.4 2025-09-08T17:21:50,523 Found link https://files.pythonhosted.org/packages/3a/2c/8275c969590e230dd2c56daab6e40d236df9736f268aa121ea426c97f819/pyxmolpp2-1.0.0.dev1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0.dev1 2025-09-08T17:21:50,523 Found link https://files.pythonhosted.org/packages/78/a7/ea6c951361316cf343a0f16da27f031ab2cfb16c90159ac52691540873fe/pyxmolpp2-1.0.0.dev3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0.dev3 2025-09-08T17:21:50,523 Found link https://files.pythonhosted.org/packages/dd/96/b6aa5603b5f40b892572e42338b23a75a78c162ec958f75f429cc4d05f34/pyxmolpp2-1.0.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.0.0 2025-09-08T17:21:50,523 Found link https://files.pythonhosted.org/packages/b6/4f/9e63388cb7670452069a038097371bd5c87ea665ea9f9cd2b3009498ab0f/pyxmolpp2-1.1.0.dev0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0.dev0 2025-09-08T17:21:50,524 Found link https://files.pythonhosted.org/packages/07/ef/f93acfeedd3cfd180366afa66c555ef0ad5f59daa22a023f7d56a37b3774/pyxmolpp2-1.1.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0 2025-09-08T17:21:50,524 Found link https://files.pythonhosted.org/packages/40/25/974e02ffd74a29b48d37f7ead5988c4fc31554ab2439361dbe6ade50df5c/pyxmolpp2-1.1.0.post1.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.1.0.post1 2025-09-08T17:21:50,524 Found link https://files.pythonhosted.org/packages/94/eb/8b82d34f5f0fff1ae0ee57db7bc01d5c582896a21aa6c23a0691f8dd2cef/pyxmolpp2-1.2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.2.0 2025-09-08T17:21:50,524 Found link https://files.pythonhosted.org/packages/8e/37/8e017030208308e0c9b96ab4799e06229a1bc3e30eb5931aa65d7bd44fc6/pyxmolpp2-1.3.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.3.0 2025-09-08T17:21:50,525 Found link https://files.pythonhosted.org/packages/69/d9/818b1d2533d74bbc1b571061bc6eadb3e8179ad45f98b996e2e752bbb8d7/pyxmolpp2-1.4.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.4.0 2025-09-08T17:21:50,525 Found link https://files.pythonhosted.org/packages/4b/7d/3a0beee575fc48b90d6685200925e081c9f00a80785f6c3399460f7a3a36/pyxmolpp2-1.5.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.0 2025-09-08T17:21:50,525 Found link https://files.pythonhosted.org/packages/5b/2a/67fff35be6b97a56c5c21823a7e98765379b83dfc6f1875e5282cbd85267/pyxmolpp2-1.5.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.2 2025-09-08T17:21:50,525 Found link https://files.pythonhosted.org/packages/ea/be/6ff70c774714c681459f089f77e92bbc13fb9bd068727404f525e4a3dbbb/pyxmolpp2-1.5.3.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.5.3 2025-09-08T17:21:50,525 Found link https://files.pythonhosted.org/packages/13/09/0b0c1f7ed58aa7605854268f7eaeadafed70cded0855d450b93fbe278cc0/pyxmolpp2-1.6.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 1.6.0 2025-09-08T17:21:50,526 Found link https://files.pythonhosted.org/packages/43/af/adb175fd4c9a52ddfd9e943962e1da8810579bc4a0643db7bfff99b8f8cb/pyxmolpp2-2.0a0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0a0 2025-09-08T17:21:50,526 Found link https://files.pythonhosted.org/packages/bd/65/7f96775c57a613b95a7abae1956572a570e9e488d9bb0b05241338a72774/pyxmolpp2-2.0.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0 2025-09-08T17:21:50,526 Found link https://files.pythonhosted.org/packages/5a/bc/01f71b18a8713194f43920fb0d89e7ae3c219abeb0efc734f0bf3303c86f/pyxmolpp2-2.0.2.tar.gz (from https://pypi.org/simple/pyxmolpp2/), version: 2.0.2 2025-09-08T17:21:50,526 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyxmolpp2/ 2025-09-08T17:21:50,527 Getting page https://www.piwheels.org/simple/pyxmolpp2/ 2025-09-08T17:21:50,528 Found index url https://www.piwheels.org/simple/ 2025-09-08T17:21:50,627 Fetched page https://www.piwheels.org/simple/pyxmolpp2/ as text/html 2025-09-08T17:21:50,628 Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp34-cp34m-linux_armv7l.whl#sha256=176920d3ec472d788331912a641cf8eb70e3eb87aac83c1e527ef33cdc152da6 (from https://www.piwheels.org/simple/pyxmolpp2/) 2025-09-08T17:21:50,629 Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp34-cp34m-linux_armv6l.whl#sha256=176920d3ec472d788331912a641cf8eb70e3eb87aac83c1e527ef33cdc152da6 (from https://www.piwheels.org/simple/pyxmolpp2/) 2025-09-08T17:21:50,629 Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=7f7fc7bce046e180693cc029132c8ab2ee085fd82c822f949a0e7852b96e50e0 (from https://www.piwheels.org/simple/pyxmolpp2/) 2025-09-08T17:21:50,629 Skipping link: No binaries permitted for pyxmolpp2: https://archive1.piwheels.org/simple/pyxmolpp2/pyxmolpp2-0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=7f7fc7bce046e180693cc029132c8ab2ee085fd82c822f949a0e7852b96e50e0 (from https://www.piwheels.org/simple/pyxmolpp2/) 2025-09-08T17:21:50,629 Skipping link: not a file: https://www.piwheels.org/simple/pyxmolpp2/ 2025-09-08T17:21:50,629 Skipping link: not a file: https://pypi.org/simple/pyxmolpp2/ 2025-09-08T17:21:50,657 Given no hashes to check 1 links for project 'pyxmolpp2': discarding no candidates 2025-09-08T17:21:50,658 Collecting pyxmolpp2==0.7.0 2025-09-08T17:21:50,660 Created temporary directory: /tmp/pip-unpack-o8qc8d60 2025-09-08T17:21:52,050 Downloading pyxmolpp2-0.7.0.tar.gz (8.6 MB) 2025-09-08T17:21:58,927 Added pyxmolpp2==0.7.0 from https://files.pythonhosted.org/packages/27/33/21c7acd6275667d94465436e150f6f3724935c4fd171dd51db516d5a3495/pyxmolpp2-0.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-ak0qrczc' 2025-09-08T17:21:58,929 Running setup.py (path:/tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c/setup.py) egg_info for package pyxmolpp2 2025-09-08T17:21:58,929 Created temporary directory: /tmp/pip-pip-egg-info-cluocc9o 2025-09-08T17:21:58,929 Preparing metadata (setup.py): started 2025-09-08T17:21:58,930 Running command python setup.py egg_info 2025-09-08T17:21:59,678 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T17:21:59,678 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T17:22:00,132 running egg_info 2025-09-08T17:22:00,210 creating /tmp/pip-pip-egg-info-cluocc9o/pyxmolpp2.egg-info 2025-09-08T17:22:00,211 writing /tmp/pip-pip-egg-info-cluocc9o/pyxmolpp2.egg-info/PKG-INFO 2025-09-08T17:22:00,212 writing dependency_links to /tmp/pip-pip-egg-info-cluocc9o/pyxmolpp2.egg-info/dependency_links.txt 2025-09-08T17:22:00,213 writing top-level names to /tmp/pip-pip-egg-info-cluocc9o/pyxmolpp2.egg-info/top_level.txt 2025-09-08T17:22:00,214 writing manifest file '/tmp/pip-pip-egg-info-cluocc9o/pyxmolpp2.egg-info/SOURCES.txt' 2025-09-08T17:22:00,364 reading manifest file '/tmp/pip-pip-egg-info-cluocc9o/pyxmolpp2.egg-info/SOURCES.txt' 2025-09-08T17:22:00,365 reading manifest template 'MANIFEST.in' 2025-09-08T17:22:01,378 warning: no files found matching '.' 2025-09-08T17:22:01,379 warning: no files found matching '.' 2025-09-08T17:22:01,379 warning: no files found matching '.' 2025-09-08T17:22:01,396 warning: no previously-included files matching '.git' found anywhere in distribution 2025-09-08T17:22:01,413 warning: no previously-included files matching '.js' found anywhere in distribution 2025-09-08T17:22:01,429 warning: no previously-included files matching '.html' found anywhere in distribution 2025-09-08T17:22:01,446 warning: no previously-included files matching '.png' found anywhere in distribution 2025-09-08T17:22:01,462 warning: no previously-included files matching '.dox' found anywhere in distribution 2025-09-08T17:22:01,725 writing manifest file '/tmp/pip-pip-egg-info-cluocc9o/pyxmolpp2.egg-info/SOURCES.txt' 2025-09-08T17:22:01,847 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T17:22:01,852 Source in /tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c has version 0.7.0, which satisfies requirement pyxmolpp2==0.7.0 from https://files.pythonhosted.org/packages/27/33/21c7acd6275667d94465436e150f6f3724935c4fd171dd51db516d5a3495/pyxmolpp2-0.7.0.tar.gz 2025-09-08T17:22:01,853 Removed pyxmolpp2==0.7.0 from https://files.pythonhosted.org/packages/27/33/21c7acd6275667d94465436e150f6f3724935c4fd171dd51db516d5a3495/pyxmolpp2-0.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-ak0qrczc' 2025-09-08T17:22:01,856 Created temporary directory: /tmp/pip-unpack-44z5kea7 2025-09-08T17:22:01,856 Created temporary directory: /tmp/pip-unpack-29ipo7qc 2025-09-08T17:22:01,856 Building wheels for collected packages: pyxmolpp2 2025-09-08T17:22:01,857 Created temporary directory: /tmp/pip-wheel-9t0x_kzi 2025-09-08T17:22:01,858 DEPRECATION: Building 'pyxmolpp2' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyxmolpp2'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T17:22:01,859 Building wheel for pyxmolpp2 (setup.py): started 2025-09-08T17:22:01,859 Destination directory: /tmp/pip-wheel-9t0x_kzi 2025-09-08T17:22:01,859 Running command python setup.py bdist_wheel 2025-09-08T17:22:02,584 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T17:22:02,584 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T17:22:02,962 running bdist_wheel 2025-09-08T17:22:03,256 running build 2025-09-08T17:22:03,257 running build_ext 2025-09-08T17:22:03,310 /tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c/setup.py:27: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. 2025-09-08T17:22:03,310 cmake_version = LooseVersion(re.search(r'version\s*([\d.]+)', out.decode()).group(1)) 2025-09-08T17:22:03,310 /tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c/setup.py:28: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. 2025-09-08T17:22:03,310 if cmake_version < LooseVersion('3.5.0'): 2025-09-08T17:22:03,354 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): 2025-09-08T17:22:03,354 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T17:22:03,354 CMake. 2025-09-08T17:22:03,355 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T17:22:03,355 to tell CMake that the project requires at least but has been updated 2025-09-08T17:22:03,355 to work with policies introduced by or earlier. 2025-09-08T17:22:03,615 -- The C compiler identification is GNU 14.2.0 2025-09-08T17:22:03,917 -- The CXX compiler identification is GNU 14.2.0 2025-09-08T17:22:03,960 -- Detecting C compiler ABI info 2025-09-08T17:22:04,383 -- Detecting C compiler ABI info - done 2025-09-08T17:22:04,453 -- Check for working C compiler: /usr/bin/cc - skipped 2025-09-08T17:22:04,455 -- Detecting C compile features 2025-09-08T17:22:04,457 -- Detecting C compile features - done 2025-09-08T17:22:04,527 -- Detecting CXX compiler ABI info 2025-09-08T17:22:05,007 -- Detecting CXX compiler ABI info - done 2025-09-08T17:22:05,079 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2025-09-08T17:22:05,081 -- Detecting CXX compile features 2025-09-08T17:22:05,085 -- Detecting CXX compile features - done 2025-09-08T17:22:05,120 CMake Warning (dev) at CMakeLists.txt:8 (find_package): 2025-09-08T17:22:05,120 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-08T17:22:05,121 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-08T17:22:05,121 the cmake_policy command to set the policy and suppress this warning. 2025-09-08T17:22:05,121 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-08T17:22:05,193 -- Found PythonInterp: /usr/bin/python3 (found version "3.13.5") 2025-09-08T17:22:05,194 CMake Warning (dev) at CMakeLists.txt:9 (find_package): 2025-09-08T17:22:05,194 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-08T17:22:05,194 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-08T17:22:05,195 the cmake_policy command to set the policy and suppress this warning. 2025-09-08T17:22:05,195 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-08T17:22:05,227 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.13.so (found suitable version "3.13.5", minimum required is "3.13") 2025-09-08T17:22:05,228 Using default python version: 3.13.5 2025-09-08T17:22:05,229 DONT USE COVERAGE PROFILE 2025-09-08T17:22:05,231 CMake Deprecation Warning at external/googletest/CMakeLists.txt:1 (cmake_minimum_required): 2025-09-08T17:22:05,231 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T17:22:05,232 CMake. 2025-09-08T17:22:05,232 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T17:22:05,232 to tell CMake that the project requires at least but has been updated 2025-09-08T17:22:05,232 to work with policies introduced by or earlier. 2025-09-08T17:22:05,250 CMake Deprecation Warning at external/googletest/googlemock/CMakeLists.txt:42 (cmake_minimum_required): 2025-09-08T17:22:05,250 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T17:22:05,250 CMake. 2025-09-08T17:22:05,250 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T17:22:05,250 to tell CMake that the project requires at least but has been updated 2025-09-08T17:22:05,250 to work with policies introduced by or earlier. 2025-09-08T17:22:05,254 CMake Deprecation Warning at external/googletest/googletest/CMakeLists.txt:49 (cmake_minimum_required): 2025-09-08T17:22:05,255 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T17:22:05,255 CMake. 2025-09-08T17:22:05,255 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T17:22:05,255 to tell CMake that the project requires at least but has been updated 2025-09-08T17:22:05,255 to work with policies introduced by or earlier. 2025-09-08T17:22:05,257 CMake Warning (dev) at external/googletest/googletest/cmake/internal_utils.cmake:233 (find_package): 2025-09-08T17:22:05,258 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-08T17:22:05,258 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-08T17:22:05,258 the cmake_policy command to set the policy and suppress this warning. 2025-09-08T17:22:05,258 Call Stack (most recent call first): 2025-09-08T17:22:05,258 external/googletest/googletest/CMakeLists.txt:84 (include) 2025-09-08T17:22:05,258 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-08T17:22:05,331 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2025-09-08T17:22:05,807 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success 2025-09-08T17:22:05,812 -- Found Threads: TRUE 2025-09-08T17:22:05,843 CMake Deprecation Warning at external/pybind11/CMakeLists.txt:8 (cmake_minimum_required): 2025-09-08T17:22:05,843 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T17:22:05,843 CMake. 2025-09-08T17:22:05,843 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T17:22:05,843 to tell CMake that the project requires at least but has been updated 2025-09-08T17:22:05,844 to work with policies introduced by or earlier. 2025-09-08T17:22:05,845 CMake Deprecation Warning at external/pybind11/tools/pybind11Tools.cmake:8 (cmake_minimum_required): 2025-09-08T17:22:05,845 Compatibility with CMake < 3.10 will be removed from a future version of 2025-09-08T17:22:05,846 CMake. 2025-09-08T17:22:05,846 Update the VERSION argument value. Or, use the ... syntax 2025-09-08T17:22:05,846 to tell CMake that the project requires at least but has been updated 2025-09-08T17:22:05,846 to work with policies introduced by or earlier. 2025-09-08T17:22:05,846 Call Stack (most recent call first): 2025-09-08T17:22:05,846 external/pybind11/CMakeLists.txt:33 (include) 2025-09-08T17:22:05,848 CMake Warning (dev) at external/pybind11/tools/FindPythonLibsNew.cmake:60 (find_package): 2025-09-08T17:22:05,848 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-09-08T17:22:05,848 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-09-08T17:22:05,848 the cmake_policy command to set the policy and suppress this warning. 2025-09-08T17:22:05,848 Call Stack (most recent call first): 2025-09-08T17:22:05,849 external/pybind11/tools/pybind11Tools.cmake:16 (find_package) 2025-09-08T17:22:05,849 external/pybind11/CMakeLists.txt:33 (include) 2025-09-08T17:22:05,849 This warning is for project developers. Use -Wno-dev to suppress it. 2025-09-08T17:22:06,523 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.13.so 2025-09-08T17:22:06,545 -- pybind11 v2.3.dev0 2025-09-08T17:22:06,549 selectionTestsSources 2025-09-08T17:22:06,550 polymerTestsSources 2025-09-08T17:22:06,551 pdbTestsSources 2025-09-08T17:22:06,552 trjtoolTestsSources 2025-09-08T17:22:06,553 geometryTestsSources 2025-09-08T17:22:06,554 crystalTestsSources 2025-09-08T17:22:06,560 CMake Error at WriteVersionInfo.cmake:15 (message): 2025-09-08T17:22:06,560 message called with incorrect number of arguments 2025-09-08T17:22:06,560 Call Stack (most recent call first): 2025-09-08T17:22:06,560 CMakeLists.txt:53 (include) 2025-09-08T17:22:06,574 -- Performing Test HAS_FLTO 2025-09-08T17:22:07,231 -- Performing Test HAS_FLTO - Success 2025-09-08T17:22:07,231 -- LTO enabled 2025-09-08T17:22:07,235 -- Configuring incomplete, errors occurred! 2025-09-08T17:22:07,262 Traceback (most recent call last): 2025-09-08T17:22:07,269 File "", line 2, in 2025-09-08T17:22:07,269 exec(compile(''' 2025-09-08T17:22:07,269 ~~~~^^^^^^^^^^^^ 2025-09-08T17:22:07,269 # This is -- a caller that pip uses to run setup.py 2025-09-08T17:22:07,269 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T17:22:07,269 ...<32 lines>... 2025-09-08T17:22:07,269 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T17:22:07,269 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T17:22:07,269 ''' % ('/tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c/setup.py',), "", "exec")) 2025-09-08T17:22:07,270 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T17:22:07,270 File "", line 35, in 2025-09-08T17:22:07,270 File "/tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c/setup.py", line 67, in 2025-09-08T17:22:07,270 setup( 2025-09-08T17:22:07,270 ~~~~~^ 2025-09-08T17:22:07,270 name='pyxmolpp2', 2025-09-08T17:22:07,270 ^^^^^^^^^^^^^^^^^ 2025-09-08T17:22:07,270 ...<9 lines>... 2025-09-08T17:22:07,270 zip_safe=False 2025-09-08T17:22:07,270 ^^^^^^^^^^^^^^ 2025-09-08T17:22:07,271 ) 2025-09-08T17:22:07,271 ^ 2025-09-08T17:22:07,271 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T17:22:07,271 return distutils.core.setup(**attrs) 2025-09-08T17:22:07,271 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T17:22:07,271 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T17:22:07,271 return run_commands(dist) 2025-09-08T17:22:07,271 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T17:22:07,271 dist.run_commands() 2025-09-08T17:22:07,272 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T17:22:07,272 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T17:22:07,272 self.run_command(cmd) 2025-09-08T17:22:07,272 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T17:22:07,272 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T17:22:07,272 super().run_command(command) 2025-09-08T17:22:07,272 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T17:22:07,272 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T17:22:07,272 cmd_obj.run() 2025-09-08T17:22:07,273 ~~~~~~~~~~~^^ 2025-09-08T17:22:07,273 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T17:22:07,273 self.run_command("build") 2025-09-08T17:22:07,273 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T17:22:07,273 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T17:22:07,273 self.distribution.run_command(command) 2025-09-08T17:22:07,273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T17:22:07,273 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T17:22:07,273 super().run_command(command) 2025-09-08T17:22:07,274 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T17:22:07,274 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T17:22:07,274 cmd_obj.run() 2025-09-08T17:22:07,274 ~~~~~~~~~~~^^ 2025-09-08T17:22:07,274 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T17:22:07,274 self.run_command(cmd_name) 2025-09-08T17:22:07,274 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T17:22:07,274 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T17:22:07,275 self.distribution.run_command(command) 2025-09-08T17:22:07,275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T17:22:07,275 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T17:22:07,275 super().run_command(command) 2025-09-08T17:22:07,275 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T17:22:07,275 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T17:22:07,275 cmd_obj.run() 2025-09-08T17:22:07,275 ~~~~~~~~~~~^^ 2025-09-08T17:22:07,275 File "/tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c/setup.py", line 32, in run 2025-09-08T17:22:07,276 self.build_extension(ext) 2025-09-08T17:22:07,276 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T17:22:07,282 File "/tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c/setup.py", line 60, in build_extension 2025-09-08T17:22:07,282 subprocess.check_call(['cmake', ext.sourcedir] + cmake_args, cwd=self.build_temp, env=env) 2025-09-08T17:22:07,282 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T17:22:07,282 File "/usr/lib/python3.13/subprocess.py", line 419, in check_call 2025-09-08T17:22:07,283 raise CalledProcessError(retcode, cmd) 2025-09-08T17:22:07,283 subprocess.CalledProcessError: Command '['cmake', '/tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c', '-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c/build/lib.linux-armv7l-cpython-313', '-DPYTHON_EXECUTABLE=/usr/bin/python3', '-DCMAKE_BUILD_WITH_INSTALL_RPATH=TRUE', '-DCMAKE_INSTALL_RPATH=$ORIGIN', '-DCMAKE_BUILD_TYPE=Release']' returned non-zero exit status 1. 2025-09-08T17:22:07,391 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T17:22:07,402 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T17:22:07,402 exec(compile('"'"''"'"''"'"' 2025-09-08T17:22:07,402 # This is -- a caller that pip uses to run setup.py 2025-09-08T17:22:07,402 # 2025-09-08T17:22:07,402 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T17:22:07,402 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T17:22:07,402 # - It provides a clear error message when setuptools is not installed. 2025-09-08T17:22:07,402 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T17:22:07,402 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T17:22:07,402 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T17:22:07,402 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T17:22:07,402 import os, sys, tokenize, traceback 2025-09-08T17:22:07,402 2025-09-08T17:22:07,402 try: 2025-09-08T17:22:07,402 import setuptools 2025-09-08T17:22:07,402 except ImportError: 2025-09-08T17:22:07,402 print( 2025-09-08T17:22:07,402 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T17:22:07,402 "the build environment with exception:", 2025-09-08T17:22:07,402 file=sys.stderr, 2025-09-08T17:22:07,402 ) 2025-09-08T17:22:07,402 traceback.print_exc() 2025-09-08T17:22:07,402 sys.exit(1) 2025-09-08T17:22:07,402 2025-09-08T17:22:07,402 __file__ = %r 2025-09-08T17:22:07,402 sys.argv[0] = __file__ 2025-09-08T17:22:07,402 2025-09-08T17:22:07,402 if os.path.exists(__file__): 2025-09-08T17:22:07,402 filename = __file__ 2025-09-08T17:22:07,402 with tokenize.open(__file__) as f: 2025-09-08T17:22:07,402 setup_py_code = f.read() 2025-09-08T17:22:07,402 else: 2025-09-08T17:22:07,402 filename = "" 2025-09-08T17:22:07,402 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T17:22:07,402 2025-09-08T17:22:07,402 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T17:22:07,402 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-9t0x_kzi[/] 2025-09-08T17:22:07,402 [bold magenta]cwd[/]: /tmp/pip-wheel-1ktx4pxo/pyxmolpp2_9f1291b56ff64c698a9f3d2f8b61bd4c/ 2025-09-08T17:22:07,402 Building wheel for pyxmolpp2 (setup.py): finished with status 'error' 2025-09-08T17:22:07,403 ERROR: Failed building wheel for pyxmolpp2 2025-09-08T17:22:07,404 Running setup.py clean for pyxmolpp2 2025-09-08T17:22:07,405 Running command python setup.py clean 2025-09-08T17:22:08,119 fatal: not a git repository (or any parent up to mount point /) 2025-09-08T17:22:08,119 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-08T17:22:08,566 running clean 2025-09-08T17:22:08,713 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T17:22:08,715 'build/lib.linux-armv7l-cpython-313' does not exist -- can't clean it 2025-09-08T17:22:08,715 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T17:22:08,716 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T17:22:08,716 removing 'build' 2025-09-08T17:22:08,827 Failed to build pyxmolpp2 2025-09-08T17:22:08,828 ERROR: Failed to build one or more wheels 2025-09-08T17:22:08,829 Exception information: 2025-09-08T17:22:08,829 Traceback (most recent call last): 2025-09-08T17:22:08,829 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T17:22:08,829 status = _inner_run() 2025-09-08T17:22:08,829 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T17:22:08,829 return self.run(options, args) 2025-09-08T17:22:08,829 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T17:22:08,829 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T17:22:08,829 return func(self, options, args) 2025-09-08T17:22:08,829 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T17:22:08,829 raise CommandError("Failed to build one or more wheels") 2025-09-08T17:22:08,829 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T17:22:08,833 Removed build tracker: '/tmp/pip-build-tracker-ak0qrczc'